schemas/coreObject.xml

   1 <?xml version="1.0" encoding="UTF-8"?>
   2 <!--
   3    * This file is part of the Vamsas Client version 0.2.
   4    * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite,
   5    *  Andrew Waterhouse and Dominik Lindner.
   6    *
   7    * Earlier versions have also been incorporated into Jalview version 2.4
   8    * since 2008, and TOPALi version 2 since 2007.
   9    *
  10    * The Vamsas Client is free software: you can redistribute it and/or modify
  11    * it under the terms of the GNU Lesser General Public License as published by
  12    * the Free Software Foundation, either version 3 of the License, or
  13    * (at your option) any later version.
  14    *
  15    * The Vamsas Client is distributed in the hope that it will be useful,
  16    * but WITHOUT ANY WARRANTY; without even the implied warranty of
  17    * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
  18    * GNU Lesser General Public License for more details.
  19    *
  20    * You should have received a copy of the GNU Lesser General Public License
  21    * along with the Vamsas Client.  If not, see <http://www.gnu.org/licenses/>.
  22 -->
  23 <VAMSAS xmlns="http://www.vamsas.org" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.vamsas.org
  24 http://www.vamsas.ac.uk/build/VamsasClient/schemas/vamsas.xsd">
  25         <DataSet>
  26                 <Sequence start="1" end="167" id="a1127235554296">
  27                         <sequence>KTAIITGGSRGIGKSIAIKLGKLGASIVLNYRNNTDALKNTIRELEDLNINVIAVQGDISNYKECEKIIKAALDKFNGIDILVNNAGITADNLILRMKEEEFDKVIETNLKGTFNCVKHCIPMIKRRYGKIINISSVVGVAGNVGQCNYAAAKAGVIGFTKSLAKEL</sequence>
  28                         <name>Q899P0</name>
  29                 </Sequence>
  30                 <Sequence start="1" end="168" id="a1127235554297">
  31                         <sequence>KIAIVTGASSGIGRAIAFKLASRGANLILGDVKIDELRKVAEEIAKETKVKVIPLYVNVGDFNSTKEFYNKGISELGVDYVDILVNNAGINRDALFVKMTYEQWDEVIKVDLYSMFNMTKQVVDMVKRNYGRIINISSLSWLGNIGQANYSAAKAGVIGFTKTLAREL</sequence>
  32                         <name>Q972M3</name>
  33                 </Sequence>
  34                 <Sequence start="1" end="167" id="a1127235554298">
  35                         <sequence>KVIVITGASSGIGEQVAMQVAEQGATPVLMARTEEKLKALADKIKETYNTPCYYYVLDVSEETEVQSVFSKVLQEVGRIDILVNNAGFGIFKTFEDASMDEVKDMFQVNVFGLVACTKAVLPYMVKRNGHIINIASLAGKIATPKSSAYAATKHAVLGFTNSLRMEL</sequence>
  36                         <name>Q81M93</name>
  37                 </Sequence>
  38                 <Sequence start="1" end="167" id="a1127235554299">
  39                         <sequence>KIALVTGAMGGLGTAICQALAKDGCIVAANCLPNFEPAAAWLGQQEALGFKFYVAEGDVSDFESCKAMVAKIEADLGPVDILVNNAGITRDKFFAKMDKAQWDAVIATNLSSLFNVTQQVSPKMERGWGRIINISSVNGVKGQAGQTNYSAAKAGVIGFTKALAAEL</sequence>
  40                         <name>NODG_AZOBR</name>
  41                 </Sequence>
  42                 <Sequence start="1" end="166" id="a1127235554300">
  43                         <sequence>QTAVVTGGGKGIGRAICLALAREGADIVIAARTEKDIRETARMVEKEGRKALPVSTDIRVEEDVENMISEAVDAFGRIDILVNNAGVAYRKYMVETSTEEYDNIMDTNLKGMFFCTKYALPYLLKREGRIINISSGAGKHGIPKLSIYSASKFAVIGFTESIAYEI</sequence>
  44                         <name>Q8PS57</name>
  45                 </Sequence>
  46                 <Sequence start="1" end="167" id="a1127235554301">
  47                         <sequence>KTAIVTGAARGIGKAIALKFAAEGANIAFTDLVIDENAEKTRVELEAMGVKAKGYASNAANFEDTAKVVEEIHKDFGRIDILVNNAGITRDGLMMRMSEQQWDMVINVNLKSAFNFIHACTPMMRQKAGSIINMASVVGVHGNAGQANYAASKAGMIALAKSIAQEL</sequence>
  48                         <name>Q8A195</name>
  49                 </Sequence>
  50                 <Sequence start="1" end="164" id="a1127235554302">
  51                         <sequence>KVVVVTGAGSGIGEATAKRFAHEGASVVLVGRNQEKLAKVAAQLKGAEHLIRATDVADLTDVEALFKEVAERFGRLDVLVNNAGVVKSGKVTELGVEDWKAVMSVDLDGVFYCTRTAMPALIASKGNIINVSSVSGLGGDWGMSFYNAAKGAITNFTRALALD</sequence>
  52                         <name>Q888G8</name>
  53                 </Sequence>
  54                 <Sequence start="1" end="164" id="a1127235554303">
  55                         <sequence>KVALVTGAANGIGLAIAERLYQEGATLALADWNEEQLAIVIEQFDSARVYAQKVDVSDPEQVQALVRKTVERFGRLDILVNNAGIHIPGTVLECSVQDWRRIASVNIDGVVYCAMHALPELIKTRGCMVNTASVSGLGGDWGAAFYCATKGAVVNFTRALALD</sequence>
  56                         <name>Q9KRP5</name>
  57                 </Sequence>
  58                 <Sequence start="1" end="163" id="a1127235554304">
  59                         <sequence>KIALVTGASRGIGRAIAELLVERGATVIGTATSEGGAAAISEYLGENGKGLALNVTDVESIEATLKAINDEFGAIDILVNNAGITRDNLLMRMKDDEWNDIINTNLTPIYRMSKAVLRMMKKRAGRIINVGSVVGTMGNAGQTNYAAAKAGVIGFTKSMAREV</sequence>
  60                         <name>Q87N22</name>
  61                 </Sequence>
  62                 <Alignment gapChar="-">
  63                         <alignmentSequence start="1" end="167" refid="a1127235554296">
  64                                 <sequence>KTAIITGGSRGIGKSIAIKLGKLGASIVLNYRNNTDALKNTIRELEDLN--INVIAVQGDISNYKECEKIIKAALDKFNG--IDILVNNAGITADNLILRMKEEEFDKVIETNLKGTFNCVKHCIPMIKRRYGKIINISSVVGVAGNVGQCNYAAAKAGVIGFTKSLAKEL</sequence>
  65                                 <name>Q899P0</name>
  66                         </alignmentSequence>
  67                         <alignmentSequence start="1" end="168" refid="a1127235554297">
  68                                 <sequence>KIAIVTGASSGIGRAIAFKLASRGANLILGDVKIDEL--RKVAEEIAKETKVKVIPLYVNVGDFNSTKEFYNKGISELGVDYVDILVNNAGINRDALFVKMTYEQWDEVIKVDLYSMFNMTKQVVDMVKRNYGRIINISSLSWL-GNIGQANYSAAKAGVIGFTKTLAREL</sequence>
  69                                 <name>Q972M3</name>
  70                         </alignmentSequence>
  71                         <alignmentSequence start="1" end="167" refid="a1127235554298">
  72                                 <sequence>KVIVITGASSGIGEQVAMQVAEQGATPVLMARTEEKL--KALADKIKETYNTPCYYYVLDVSEETEVQSVFSKVLQEVGR--IDILVNNAGFGIFKTFEDASMDEVKDMFQVNVFGLVACTKAVLPYMVKRNGHIINIASLAGKIATPKSSAYAATKHAVLGFTNSLRMEL</sequence>
  73                                 <name>Q81M93</name>
  74                         </alignmentSequence>
  75                         <alignmentSequence start="1" end="167" refid="a1127235554299">
  76                                 <sequence>KIALVTGAMGGLGTAICQALAKDGCIVAANCLPNFEPAAAWLGQQEALG--FKFYVAEGDVSDFESCKAMVAKIEADLGP--VDILVNNAGITRDKFFAKMDKAQWDAVIATNLSSLFNVTQQVSPKMERGWGRIINISSVNGVKGQAGQTNYSAAKAGVIGFTKALAAEL</sequence>
  77                                 <name>NODG_AZOBR</name>
  78                         </alignmentSequence>
  79                         <alignmentSequence start="1" end="166" refid="a1127235554300">
  80                                 <sequence>QTAVVTGGGKGIGRAICLALAREGADIVIAARTEKDI--RETARMVEKEG-RKALPVSTDIRVEEDVENMISEAVDAFGR--IDILVNNAGVAYRKYMVETSTEEYDNIMDTNLKGMFFCTKYALPYLLKREGRIINISSGAGKHGIPKLSIYSASKFAVIGFTESIAYEI</sequence>
  81                                 <name>Q8PS57</name>
  82                         </alignmentSequence>
  83                         <alignmentSequence start="1" end="167" refid="a1127235554301">
  84                                 <sequence>KTAIVTGAARGIGKAIALKFAAEGANIAFTDLVIDENAEKTRVELEAMG--VKAKGYASNAANFEDTAKVVEEIHKDFGR--IDILVNNAGITRDGLMMRMSEQQWDMVINVNLKSAFNFIHACTPMMRQKAGSIINMASVVGVHGNAGQANYAASKAGMIALAKSIAQEL</sequence>
  85                                 <name>Q8A195</name>
  86                         </alignmentSequence>
  87                         <alignmentSequence start="1" end="164" refid="a1127235554302">
  88                                 <sequence>KVVVVTGAGSGIGEATAKRFAHEGASVVLVGRNQEKL--AKVAAQLKG---AEHLIRATDVADLTDVEALFKEVAERFGR--LDVLVNNAGVVKSGKVTELGVEDWKAVMSVDLDGVFYCTRTAMPALIASKGNIINVSSVSGLGGDWGMSFYNAAKGAITNFTRALALD-</sequence>
  89                                 <name>Q888G8</name>
  90                         </alignmentSequence>
  91                         <alignmentSequence start="1" end="164" refid="a1127235554303">
  92                                 <sequence>KVALVTGAANGIGLAIAERLYQEGATLALADWNEEQL--AIVIEQFDS---ARVYAQKVDVSDPEQVQALVRKTVERFGR--LDILVNNAGIHIPGTVLECSVQDWRRIASVNIDGVVYCAMHALPELIKTRGCMVNTASVSGLGGDWGAAFYCATKGAVVNFTRALALD-</sequence>
  93                                 <name>Q9KRP5</name>
  94                         </alignmentSequence>
  95                         <alignmentSequence start="1" end="163" refid="a1127235554304">
  96                                 <sequence>KIALVTGASRGIGRAIAELLVERGATVIGTATSEGGA--AAISEYLG----ENGKGLALNVTDVESIEATLKAINDEFGA--IDILVNNAGITRDNLLMRMKDDEWNDIINTNLTPIYRMSKAVLRMMKKRAGRIINVGSVVGTMGNAGQTNYAAAKAGVIGFTKSMAREV</sequence>
  97                                 <name>Q87N22</name>
  98                         </alignmentSequence>
  99                         <Provenance>
 100                                 <entry>
 101                                         <User>jim</User>
 102                                         <Action>edited</Action>
 103                                         <Date>2005-12-21</Date>
 104                                 </entry>
 105                         </Provenance>
 106                 </Alignment>
 107                 <Provenance>
 108                         <entry>
 109                                 <User>jim</User>
 110                                 <Action>edited</Action>
 111                                 <Date>2005-11-21</Date>
 112                         </entry>
 113                 </Provenance>
 114         </DataSet>
 115 </VAMSAS>