2 * This file is part of the Vamsas Client version 0.1.
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3 * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite,
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4 * Andrew Waterhouse and Dominik Lindner.
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6 * Earlier versions have also been incorporated into Jalview version 2.4
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7 * since 2008, and TOPALi version 2 since 2007.
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9 * The Vamsas Client is free software: you can redistribute it and/or modify
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10 * it under the terms of the GNU Lesser General Public License as published by
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11 * the Free Software Foundation, either version 3 of the License, or
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12 * (at your option) any later version.
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14 * The Vamsas Client is distributed in the hope that it will be useful,
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15 * but WITHOUT ANY WARRANTY; without even the implied warranty of
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16 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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17 * GNU Lesser General Public License for more details.
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19 * You should have received a copy of the GNU Lesser General Public License
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20 * along with the Vamsas Client. If not, see <http://www.gnu.org/licenses/>.
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22 package uk.ac.vamsas.objects.core.descriptors;
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24 //---------------------------------/
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25 //- Imported classes and packages -/
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26 //---------------------------------/
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28 import uk.ac.vamsas.objects.core.Seg;
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31 * Class SegDescriptor.
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33 * @version $Revision$ $Date$
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35 public class SegDescriptor extends
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36 org.exolab.castor.xml.util.XMLClassDescriptorImpl {
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38 // --------------------------/
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39 // - Class/Member Variables -/
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40 // --------------------------/
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43 * Field _elementDefinition.
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45 private boolean _elementDefinition;
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50 private java.lang.String _nsPrefix;
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55 private java.lang.String _nsURI;
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60 private java.lang.String _xmlName;
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62 // ----------------/
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63 // - Constructors -/
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64 // ----------------/
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66 public SegDescriptor() {
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68 _nsURI = "http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes";
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70 _elementDefinition = true;
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71 org.exolab.castor.xml.util.XMLFieldDescriptorImpl desc = null;
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72 org.exolab.castor.mapping.FieldHandler handler = null;
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73 org.exolab.castor.xml.FieldValidator fieldValidator = null;
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74 // -- initialize attribute descriptors
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77 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
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78 java.lang.Integer.TYPE, "_start", "start",
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79 org.exolab.castor.xml.NodeType.Attribute);
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80 handler = new org.exolab.castor.xml.XMLFieldHandler() {
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81 public java.lang.Object getValue(java.lang.Object object)
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82 throws IllegalStateException {
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83 Seg target = (Seg) object;
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84 if (!target.hasStart()) {
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87 return new java.lang.Integer(target.getStart());
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90 public void setValue(java.lang.Object object, java.lang.Object value)
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91 throws IllegalStateException, IllegalArgumentException {
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93 Seg target = (Seg) object;
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94 // ignore null values for non optional primitives
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95 if (value == null) {
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99 target.setStart(((java.lang.Integer) value).intValue());
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100 } catch (java.lang.Exception ex) {
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101 throw new IllegalStateException(ex.toString());
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105 public java.lang.Object newInstance(java.lang.Object parent) {
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109 desc.setHandler(handler);
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110 desc.setRequired(true);
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111 desc.setMultivalued(false);
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112 addFieldDescriptor(desc);
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114 // -- validation code for: _start
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115 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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116 fieldValidator.setMinOccurs(1);
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117 { // -- local scope
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118 org.exolab.castor.xml.validators.IntValidator typeValidator;
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119 typeValidator = new org.exolab.castor.xml.validators.IntValidator();
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120 fieldValidator.setValidator(typeValidator);
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121 typeValidator.setMinInclusive(-2147483648);
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122 typeValidator.setMaxInclusive(2147483647);
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124 desc.setValidator(fieldValidator);
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126 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
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127 java.lang.Integer.TYPE, "_end", "end",
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128 org.exolab.castor.xml.NodeType.Attribute);
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129 handler = new org.exolab.castor.xml.XMLFieldHandler() {
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130 public java.lang.Object getValue(java.lang.Object object)
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131 throws IllegalStateException {
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132 Seg target = (Seg) object;
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133 if (!target.hasEnd()) {
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136 return new java.lang.Integer(target.getEnd());
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139 public void setValue(java.lang.Object object, java.lang.Object value)
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140 throws IllegalStateException, IllegalArgumentException {
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142 Seg target = (Seg) object;
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143 // ignore null values for non optional primitives
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144 if (value == null) {
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148 target.setEnd(((java.lang.Integer) value).intValue());
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149 } catch (java.lang.Exception ex) {
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150 throw new IllegalStateException(ex.toString());
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154 public java.lang.Object newInstance(java.lang.Object parent) {
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158 desc.setHandler(handler);
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159 desc.setRequired(true);
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160 desc.setMultivalued(false);
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161 addFieldDescriptor(desc);
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163 // -- validation code for: _end
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164 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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165 fieldValidator.setMinOccurs(1);
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166 { // -- local scope
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167 org.exolab.castor.xml.validators.IntValidator typeValidator;
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168 typeValidator = new org.exolab.castor.xml.validators.IntValidator();
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169 fieldValidator.setValidator(typeValidator);
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170 typeValidator.setMinInclusive(-2147483648);
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171 typeValidator.setMaxInclusive(2147483647);
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173 desc.setValidator(fieldValidator);
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175 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
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176 java.lang.Boolean.TYPE, "_inclusive", "inclusive",
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177 org.exolab.castor.xml.NodeType.Attribute);
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178 handler = new org.exolab.castor.xml.XMLFieldHandler() {
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179 public java.lang.Object getValue(java.lang.Object object)
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180 throws IllegalStateException {
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181 Seg target = (Seg) object;
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182 if (!target.hasInclusive()) {
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185 return (target.getInclusive() ? java.lang.Boolean.TRUE
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186 : java.lang.Boolean.FALSE);
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189 public void setValue(java.lang.Object object, java.lang.Object value)
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190 throws IllegalStateException, IllegalArgumentException {
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192 Seg target = (Seg) object;
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193 // ignore null values for non optional primitives
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194 if (value == null) {
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198 target.setInclusive(((java.lang.Boolean) value).booleanValue());
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199 } catch (java.lang.Exception ex) {
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200 throw new IllegalStateException(ex.toString());
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204 public java.lang.Object newInstance(java.lang.Object parent) {
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208 desc.setHandler(handler);
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209 desc.setRequired(true);
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210 desc.setMultivalued(false);
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211 addFieldDescriptor(desc);
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213 // -- validation code for: _inclusive
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214 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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215 fieldValidator.setMinOccurs(1);
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216 { // -- local scope
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217 org.exolab.castor.xml.validators.BooleanValidator typeValidator;
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218 typeValidator = new org.exolab.castor.xml.validators.BooleanValidator();
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219 fieldValidator.setValidator(typeValidator);
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221 desc.setValidator(fieldValidator);
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222 // -- initialize element descriptors
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231 * Method getAccessMode.
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233 * @return the access mode specified for this class.
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235 public org.exolab.castor.mapping.AccessMode getAccessMode() {
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240 * Method getIdentity.
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242 * @return the identity field, null if this class has no identity.
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244 public org.exolab.castor.mapping.FieldDescriptor getIdentity() {
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245 return super.getIdentity();
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249 * Method getJavaClass.
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251 * @return the Java class represented by this descriptor.
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253 public java.lang.Class getJavaClass() {
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254 return uk.ac.vamsas.objects.core.Seg.class;
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258 * Method getNameSpacePrefix.
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260 * @return the namespace prefix to use when marshaling as XML.
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262 public java.lang.String getNameSpacePrefix() {
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267 * Method getNameSpaceURI.
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269 * @return the namespace URI used when marshaling and unmarshaling as XML.
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271 public java.lang.String getNameSpaceURI() {
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276 * Method getValidator.
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278 * @return a specific validator for the class described by this
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281 public org.exolab.castor.xml.TypeValidator getValidator() {
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286 * Method getXMLName.
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288 * @return the XML Name for the Class being described.
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290 public java.lang.String getXMLName() {
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295 * Method isElementDefinition.
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297 * @return true if XML schema definition of this Class is that of a global
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298 * element or element with anonymous type definition.
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300 public boolean isElementDefinition() {
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301 return _elementDefinition;
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