2 * This file is part of the Vamsas Client version 0.1.
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3 * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite,
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4 * Andrew Waterhouse and Dominik Lindner.
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6 * Earlier versions have also been incorporated into Jalview version 2.4
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7 * since 2008, and TOPALi version 2 since 2007.
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9 * The Vamsas Client is free software: you can redistribute it and/or modify
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10 * it under the terms of the GNU Lesser General Public License as published by
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11 * the Free Software Foundation, either version 3 of the License, or
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12 * (at your option) any later version.
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14 * The Vamsas Client is distributed in the hope that it will be useful,
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15 * but WITHOUT ANY WARRANTY; without even the implied warranty of
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16 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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17 * GNU Lesser General Public License for more details.
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19 * You should have received a copy of the GNU Lesser General Public License
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20 * along with the Vamsas Client. If not, see <http://www.gnu.org/licenses/>.
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22 package uk.ac.vamsas.objects.core.descriptors;
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24 //---------------------------------/
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25 //- Imported classes and packages -/
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26 //---------------------------------/
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28 import uk.ac.vamsas.objects.core.Treenode;
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31 * Class TreenodeDescriptor.
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33 * @version $Revision$ $Date$
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35 public class TreenodeDescriptor extends
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36 uk.ac.vamsas.objects.core.descriptors.NodeTypeDescriptor {
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38 // --------------------------/
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39 // - Class/Member Variables -/
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40 // --------------------------/
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43 * Field _elementDefinition.
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45 private boolean _elementDefinition;
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50 private java.lang.String _nsPrefix;
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55 private java.lang.String _nsURI;
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60 private java.lang.String _xmlName;
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62 // ----------------/
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63 // - Constructors -/
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64 // ----------------/
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66 public TreenodeDescriptor() {
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68 setExtendsWithoutFlatten(new uk.ac.vamsas.objects.core.descriptors.NodeTypeDescriptor());
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69 _nsURI = "http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes";
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70 _xmlName = "treenode";
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71 _elementDefinition = true;
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72 org.exolab.castor.xml.util.XMLFieldDescriptorImpl desc = null;
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73 org.exolab.castor.mapping.FieldHandler handler = null;
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74 org.exolab.castor.xml.FieldValidator fieldValidator = null;
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75 // -- initialize attribute descriptors
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78 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
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79 java.lang.Object.class, "_treeId", "treeId",
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80 org.exolab.castor.xml.NodeType.Attribute);
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81 desc.setReference(true);
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82 handler = new org.exolab.castor.xml.XMLFieldHandler() {
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83 public java.lang.Object getValue(java.lang.Object object)
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84 throws IllegalStateException {
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85 Treenode target = (Treenode) object;
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86 return target.getTreeId();
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89 public void setValue(java.lang.Object object, java.lang.Object value)
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90 throws IllegalStateException, IllegalArgumentException {
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92 Treenode target = (Treenode) object;
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93 target.addTreeId((java.lang.Object) value);
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94 } catch (java.lang.Exception ex) {
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95 throw new IllegalStateException(ex.toString());
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99 public void resetValue(Object object) throws IllegalStateException,
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100 IllegalArgumentException {
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102 Treenode target = (Treenode) object;
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103 target.removeAllTreeId();
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104 } catch (java.lang.Exception ex) {
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105 throw new IllegalStateException(ex.toString());
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109 public java.lang.Object newInstance(java.lang.Object parent) {
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110 return new java.lang.Object();
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113 desc.setMultivalued(true);
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114 desc.setHandler(handler);
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115 desc.setMultivalued(true);
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116 addFieldDescriptor(desc);
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118 // -- validation code for: _treeId
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119 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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120 fieldValidator.setMinOccurs(0);
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121 { // -- local scope
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122 org.exolab.castor.xml.validators.IdRefsValidator typeValidator = new org.exolab.castor.xml.validators.IdRefsValidator();
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123 fieldValidator.setValidator(typeValidator);
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124 desc.setValidator(fieldValidator);
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126 desc.setValidator(fieldValidator);
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128 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
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129 java.lang.String.class, "_nodespec", "nodespec",
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130 org.exolab.castor.xml.NodeType.Attribute);
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131 desc.setImmutable(true);
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132 handler = new org.exolab.castor.xml.XMLFieldHandler() {
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133 public java.lang.Object getValue(java.lang.Object object)
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134 throws IllegalStateException {
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135 Treenode target = (Treenode) object;
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136 return target.getNodespec();
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139 public void setValue(java.lang.Object object, java.lang.Object value)
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140 throws IllegalStateException, IllegalArgumentException {
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142 Treenode target = (Treenode) object;
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143 target.setNodespec((java.lang.String) value);
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144 } catch (java.lang.Exception ex) {
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145 throw new IllegalStateException(ex.toString());
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149 public java.lang.Object newInstance(java.lang.Object parent) {
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153 desc.setHandler(handler);
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154 desc.setMultivalued(false);
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155 addFieldDescriptor(desc);
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157 // -- validation code for: _nodespec
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158 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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159 { // -- local scope
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160 org.exolab.castor.xml.validators.StringValidator typeValidator;
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161 typeValidator = new org.exolab.castor.xml.validators.StringValidator();
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162 fieldValidator.setValidator(typeValidator);
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163 typeValidator.setWhiteSpace("preserve");
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165 desc.setValidator(fieldValidator);
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166 // -- initialize element descriptors
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175 * Method getAccessMode.
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177 * @return the access mode specified for this class.
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179 public org.exolab.castor.mapping.AccessMode getAccessMode() {
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184 * Method getIdentity.
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186 * @return the identity field, null if this class has no identity.
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188 public org.exolab.castor.mapping.FieldDescriptor getIdentity() {
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189 return super.getIdentity();
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193 * Method getJavaClass.
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195 * @return the Java class represented by this descriptor.
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197 public java.lang.Class getJavaClass() {
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198 return uk.ac.vamsas.objects.core.Treenode.class;
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202 * Method getNameSpacePrefix.
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204 * @return the namespace prefix to use when marshaling as XML.
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206 public java.lang.String getNameSpacePrefix() {
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211 * Method getNameSpaceURI.
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213 * @return the namespace URI used when marshaling and unmarshaling as XML.
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215 public java.lang.String getNameSpaceURI() {
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220 * Method getValidator.
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222 * @return a specific validator for the class described by this
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225 public org.exolab.castor.xml.TypeValidator getValidator() {
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230 * Method getXMLName.
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232 * @return the XML Name for the Class being described.
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234 public java.lang.String getXMLName() {
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239 * Method isElementDefinition.
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241 * @return true if XML schema definition of this Class is that of a global
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242 * element or element with anonymous type definition.
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244 public boolean isElementDefinition() {
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245 return _elementDefinition;
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