2 * This file is part of the Vamsas Client version 0.1.
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3 * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite,
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4 * Andrew Waterhouse and Dominik Lindner.
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6 * Earlier versions have also been incorporated into Jalview version 2.4
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7 * since 2008, and TOPALi version 2 since 2007.
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9 * The Vamsas Client is free software: you can redistribute it and/or modify
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10 * it under the terms of the GNU Lesser General Public License as published by
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11 * the Free Software Foundation, either version 3 of the License, or
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12 * (at your option) any later version.
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14 * The Vamsas Client is distributed in the hope that it will be useful,
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15 * but WITHOUT ANY WARRANTY; without even the implied warranty of
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16 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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17 * GNU Lesser General Public License for more details.
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19 * You should have received a copy of the GNU Lesser General Public License
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20 * along with the Vamsas Client. If not, see <http://www.gnu.org/licenses/>.
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22 package uk.ac.vamsas.objects.utils;
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24 public class SymbolDictionary {
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26 * defines standard names and properties for vamsas sequence dictionaries
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28 static final public String STANDARD_AA = "info:iubmb.org/aminoacids"; // strict
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33 static final public String STANDARD_NA = "info:iubmb.org/nucleosides";// strict
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44 * TODO: Vamsas Dictionary properties interface an interface for dictionary
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45 * provides : validation for a string symbolwidth (or symbol next/previous)
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46 * mappings to certain other dictionaries (one2three, etc) gap-character test
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