2 * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
3 * Copyright (C) 2014 The Jalview Authors
5 * This file is part of Jalview.
7 * Jalview is free software: you can redistribute it and/or
8 * modify it under the terms of the GNU General Public License
9 * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
11 * Jalview is distributed in the hope that it will be useful, but
12 * WITHOUT ANY WARRANTY; without even the implied warranty
13 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
14 * PURPOSE. See the GNU General Public License for more details.
16 * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
17 * The Jalview Authors are detailed in the 'AUTHORS' file.
19 package jalview.ws.dbsources;
21 import java.io.BufferedReader;
23 import java.io.FileReader;
24 import jalview.ws.seqfetcher.DbSourceProxyImpl;
26 public abstract class EbiFileRetrievedProxy extends DbSourceProxyImpl
30 * temp path to retrieved file
32 protected String file = null;
34 public StringBuffer getRawRecords()
38 StringBuffer bf = null;
41 File f = new File(file);
44 bf = new StringBuffer();
45 BufferedReader breader = new BufferedReader(new FileReader(f));
47 while (breader.ready() && (line = breader.readLine()) != null)
55 System.err.println("Warning: problems reading temp file " + file);