2 * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3 * Copyright (C) $$Year-Rel$$ The Jalview Authors
5 * This file is part of Jalview.
7 * Jalview is free software: you can redistribute it and/or
8 * modify it under the terms of the GNU General Public License
9 * as published by the Free Software Foundation, either version 3
10 * of the License, or (at your option) any later version.
12 * Jalview is distributed in the hope that it will be useful, but
13 * WITHOUT ANY WARRANTY; without even the implied warranty
14 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15 * PURPOSE. See the GNU General Public License for more details.
17 * You should have received a copy of the GNU General Public License
18 * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19 * The Jalview Authors are detailed in the 'AUTHORS' file.
21 package jalview.ext.treeviewer;
23 import jalview.datamodel.SequenceI;
24 import jalview.structure.SelectionListener;
25 import jalview.structure.SelectionSource;
27 import java.awt.event.ActionListener;
28 import java.awt.event.MouseListener;
32 * Interface for binding a tree viewer to Jalview alignments. Assumes a tree
33 * viewer will both want to receive and send selection events. Note that this
34 * will take anything as a TreeNode object as no assumptions can be made about
35 * the inheritance structure of the TreeNode (besides being an Object).
37 * @author kjvanderheide
42 public interface ExternalTreeViewerBindingI<N>
43 extends ActionListener, MouseListener, SelectionListener,
47 * If a node is selected in the tree panel this method highlights the
48 * corresponding sequence in the Jalview alignment view. If an internal node
49 * is selected all child sequences get highlighted as well.
51 public void showNodeSelectionOnAlign(N node);
53 public void treeSelectionChanged(SequenceI sequence);
55 public void showMatchingSequence(N nodeToMatch);
57 public void showMatchingChildSequences(N parentNode);