2 * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3 * Copyright (C) $$Year-Rel$$ The Jalview Authors
5 * This file is part of Jalview.
7 * Jalview is free software: you can redistribute it and/or
8 * modify it under the terms of the GNU General Public License
9 * as published by the Free Software Foundation, either version 3
10 * of the License, or (at your option) any later version.
12 * Jalview is distributed in the hope that it will be useful, but
13 * WITHOUT ANY WARRANTY; without even the implied warranty
14 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15 * PURPOSE. See the GNU General Public License for more details.
17 * You should have received a copy of the GNU General Public License
18 * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19 * The Jalview Authors are detailed in the 'AUTHORS' file.
23 import org.testng.Assert;
24 import org.testng.annotations.DataProvider;
25 import org.testng.annotations.Test;
27 public class IdentifyFileTest
30 @Test(groups = { "Functional" }, dataProvider = "identifyFiles")
31 public void Identify(String data, String expectedFileType)
33 String protocol = AppletFormatAdapter.FILE;
34 IdentifyFile ider = new IdentifyFile();
35 String actualFiletype = ider.Identify(data, protocol);
36 Assert.assertEquals(actualFiletype, expectedFileType,
37 "File identification Failed!");
40 @DataProvider(name = "identifyFiles")
41 public Object[][] IdentifyFileDP()
43 return new Object[][] {
44 { "examples/example.json", "JSON" },
45 { "examples/plantfdx.fa", "FASTA" },
46 { "examples/dna_interleaved.phy", "PHYLIP" },
47 { "examples/2GIS.pdb", "PDB" },
48 { "examples/rf00031_folded.stk", "STH" },
49 { "examples/testdata/test.rnaml", "RNAML" },
50 { "examples/testdata/test.aln", "CLUSTAL" },
51 { "examples/testdata/test.pfam", "PFAM" },
52 { "examples/testdata/test.msf", "MSF" },
53 { "examples/testdata/test.pir", "PIR" },
54 { "examples/testdata/test.html", "HTML" },
55 { "examples/testdata/test.pileup", "PileUp" },
56 { "examples/testdata/test.blc", "BLC" },
57 { "examples/testdata/simplegff3.gff", "GFF v2 or v3" },
58 { "examples/testdata/test.jvp", "Jalview" },
60 "examples/testdata/cullpdb_pc25_res3.0_R0.3_d150729_chains9361.fasta.15316",
63 // { "examples/testdata/test.amsa", "AMSA" },
64 // { "examples/test.jnet", "JnetFile" },