1 package jalview.ws.api;
3 import jalview.analysis.NJTree;
4 import jalview.datamodel.SequenceI;
5 import jalview.ws.params.InvalidArgumentException;
6 import jalview.ws.params.WsParamSetI;
8 import java.io.IOError;
9 import java.rmi.ServerError;
10 import java.util.List;
12 public interface MsaWithGuideTreeI
15 * Given a set of sequences
19 * @return JobId or exceptions are thrown.
21 public JobId align(List<SequenceI> toalign, NJTree guideTree,
22 WsParamSetI parameters)
23 throws InvalidArgumentException, ServerError, IOError;