2 * Jalview - A Sequence Alignment Editor and Viewer
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3 * Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
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5 * This program is free software; you can redistribute it and/or
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6 * modify it under the terms of the GNU General Public License
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7 * as published by the Free Software Foundation; either version 2
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8 * of the License, or (at your option) any later version.
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10 * This program is distributed in the hope that it will be useful,
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11 * but WITHOUT ANY WARRANTY; without even the implied warranty of
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12 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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13 * GNU General Public License for more details.
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15 * You should have received a copy of the GNU General Public License
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16 * along with this program; if not, write to the Free Software
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17 * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
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19 package jalview.datamodel;
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21 public class SequenceFeature {
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28 public SequenceFeature() {
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31 public SequenceFeature(String type, int start, int end, String description,
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36 this.description = description;
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37 this.status = status;
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40 public int getStart() {
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44 public int getEnd() {
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48 public String getType() {
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52 public String getDescription() {
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56 public String getStatus() {
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61 <xs:enumeration value="active site" />
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62 <xs:enumeration value="binding site" />
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63 <xs:enumeration value="calcium-binding region" />
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64 <xs:enumeration value="chain" />
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65 <xs:enumeration value="cross-link" />
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66 <xs:enumeration value="disulfide bond" />
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67 <xs:enumeration value="DNA-binding region" />
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68 <xs:enumeration value="domain" />
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69 <xs:enumeration value="glycosylation site" />
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70 <xs:enumeration value="helix" />
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71 <xs:enumeration value="initiator methionine" />
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72 <xs:enumeration value="lipid moiety-binding region" />
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73 <xs:enumeration value="metal ion-binding site" />
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74 <xs:enumeration value="modified residue" />
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75 <xs:enumeration value="mutagenesis site" />
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76 <xs:enumeration value="non-consecutive residues" />
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77 <xs:enumeration value="non-terminal residue" />
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78 <xs:enumeration value="nucleotide phosphate-binding region" />
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79 <xs:enumeration value="peptide" />
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80 <xs:enumeration value="propeptide" />
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81 <xs:enumeration value="repeat" />
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82 <xs:enumeration value="selenocysteine" />
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83 <xs:enumeration value="sequence conflict" />
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84 <xs:enumeration value="sequence variant" />
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85 <xs:enumeration value="signal peptide" />
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86 <xs:enumeration value="similar" />
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87 <xs:enumeration value="site" />
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88 <xs:enumeration value="splice variant" />
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89 <xs:enumeration value="strand" />
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90 <xs:enumeration value="thioether bond" />
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91 <xs:enumeration value="thiolester bond" />
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92 <xs:enumeration value="transit peptide" />
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93 <xs:enumeration value="transmembrane region" />
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94 <xs:enumeration value="turn" />
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95 <xs:enumeration value="unsure residue" />
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96 <xs:enumeration value="zinc finger region" />
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