1 package jalview.ext.archaeopteryx;
3 import jalview.ext.treeviewer.ExternalTreeI;
4 import jalview.ext.treeviewer.ExternalTreeNodeI;
6 import org.forester.phylogeny.Phylogeny;
8 public class Tree implements ExternalTreeI
10 private final Phylogeny tree;
12 public Tree(Phylogeny aptxTree)
18 public Phylogeny getOriginalTree()
25 public ExternalTreeNodeI getRoot()
27 ExternalTreeNodeI root = new TreeNode(tree.getRoot());
32 public void setTreeName(String name)
39 public ExternalTreeNodeI getNodeWithName(String name)
41 return new TreeNode(tree.getNode(name));
46 public String[] getAllLeafNames()
48 return tree.getAllExternalNodeNames();