2 <project name="jalviewX" default="build" basedir=".">
3 <!-- utils is a class path to additional utilities needed for
4 building docs, jars and webstart stuff -->
9 <path id="axis.classpath">
10 <!--> <fileset dir="/usr/local/axis/lib">
11 <include name="**/*.jar" />
13 <fileset dir="/usr/local/jakarta-tomcat-5/webapps/axis/WEB-INF/lib">
14 <include name="**/*.jar"/>
15 <include name="*.jar"/>
19 <property name="libDir" value="lib"/>
20 <property name="resourceDir" value="resources"/>
21 <property name="helpDir" value="help"/>
22 <property name="docDir" value="doc"/>
23 <property name="sourceDir" value="src" />
24 <property name="outputDir" value="classes" />
25 <property name="packageDir" value="dist" />
26 <property name="outputJar" value="jalview.jar" />
27 <property name="wsdl.File" value="http://anaplog.compbio.dundee.ac.uk:8080/axis/services/jpred?wsdl" />
28 <property name="WebStartLocation" value="http://www.compbio.dundee.ac.uk/~jimp/jalviewtest"/>
29 <property name="wsdl.Namespace" value="vamsas" />
30 <property name="wsdl.ClientNS" value="ext.vamsas" />
32 <path id="build.classpath">
34 <include name="*.jar"/>
35 <include name="**/*.jar"/>
37 <fileset dir="${libDir}">
38 <include name="*.jar"/>
39 <include name="**/*.jar"/>
41 <!-- <fileset dir="old_lib_signed">
42 <include name="lib_axis.jar"/>
46 <!--> <uptodate property="help.uptodate"
47 targetfile="${helpDir}/helpIndex.xml">
50 includes="**/*.html" />
55 <target name="clean" depends="init">
56 <!-- not efficient yet. -->
57 <delete dir="${outputDir}"/>
60 <target name="distclean" depends="init, clean">
62 <echo message="REMOVING ALL BACKUP/AUTOSAVES!"/>
65 <include name="${outputJar}"/>
67 <include name="#*.*#"/>
68 <include name="**/#*#"/>
69 <include name="**/#*.*#"/>
71 <include name="*.*~"/>
72 <include name="**/*~"/>
73 <include name="**/*.*~"/>
78 <target name="prepare" depends="init">
79 <mkdir dir="${outputDir}"/>
80 <copy todir="${outputDir}">
83 <include name="${docDir}/**/*.*"/>
84 <include name="${helpDir}/**/*.*"/>
85 <include name="${libDir}/*.*"/>
87 <fileset dir="${resourceDir}">
88 <include name="**/*.*"/>
93 <target name="build" depends="prepare">
94 <!-- not efficient yet. -->
95 <javac source="1.4" target="1.4" srcdir="${sourceDir}" destdir="${outputDir}"
96 classpathref="build.classpath" />
98 <target name="buildindices" depends="init, prepare"
99 unless="help.uptodate">
101 classname="com.sun.java.help.search.Indexer"
102 classpathref="build.classpath"
104 dir="${outputDir}/${helpDir}"
110 <target name="makejars" depends="build, buildindices">
111 <!-- make the package jar -->
112 <mkdir dir="${packageDir}"/>
114 <jar destfile="${packageDir}/${outputJar}">
115 <fileset dir="${outputDir}">
116 <exclude name="*.jar" />
120 <copy toDir="${packageDir}" flatten="true">
121 <fileset dir="${outputDir}">
122 <include name="*.jar"/>
123 <include name="**/*.jar"/>
128 storepass="alignmentisfun"
129 keypass="alignmentisfun"
130 keystore="keys/.keystore"
136 <fileset dir="${packageDir}">
137 <include name="*.jar"/>
140 <taskdef classpathref="build.classpath" resource="com/roxes/tools/ant/taskdefs.properties"/>
142 <!-- codebase="http://www.jalview.org/jalview/webstart" -->
143 <jnlp toFile="${packageDir}/Jalview.jnlp" href="Jalview.jnlp"
144 codebase="${WebStartLocation}">
146 <title>Jalview</title>
147 <vendor>M Clamp</vendor>
148 <homepage href="www.jalview.org"/>
149 <description>Jalview Multiple Alignment Editor</description>
150 <description kind="short">Jalview</description>
151 <icon href="BartonGroupBanner.gif"/>
154 <j2se version="1.3+"/>
155 <fileset dir="${packageDir}">
156 <include name="jalview.jar"/>
158 <fileset dir="${packageDir}">
159 <include name="*.jar"/>
160 <exclude name="jalview.jar"/>
163 <application_desc main_class="jalview.bin.Jalview">
164 <argument>http://www.compbio.dundee.ac.uk/~andrew/jalview/glut.msf</argument>
171 <target name="runenv" depends="init">
172 <path id="run.classpath">
173 <pathelement location="${outputDir}"/>
174 <fileset dir="${outputDir}">
175 <include name="${libDir}/*.jar"/>
178 <pathconvert targetos="unix" refid="run.classpath" property="run.classpath"/>
180 <echo>java -classpath ${run.classpath} jalview.bin.Jalview
184 <target name="buildextclients" depends="init">
185 <path id="axisbuild">
186 <!-- <path refid="axis.classpath"/> -->
187 <path refid="build.classpath"/>
189 <taskdef resource="axis-tasks.properties" classpathref="axisbuild"/>
191 <fileset dir="${sourceDir}" id="client">
192 <include name="${wsdl.ClientNS}/*.*"/>
197 output="${sourceDir}"
201 deployscope="Request"
206 namespace="${wsdl.Namespace}"
207 package="${wsdl.ClientNS}"
209 <mapping namespace="http://dataTypes.vamsas"
210 package="${wsdl.ClientNS}"/>
215 <target name="package" depends="init, build">