1 com/stevesoft/pat/Boundary.js
2 com/stevesoft/pat/Bracket.js
3 com/stevesoft/pat/Branch.js
4 com/stevesoft/pat/CaseMgr.js
5 com/stevesoft/pat/FastBracket.js
6 com/stevesoft/pat/FastChar.js
7 com/stevesoft/pat/FastMulti.js
8 com/stevesoft/pat/NUnicodeAlpha.js
9 com/stevesoft/pat/NUnicodeCurrency.js
10 com/stevesoft/pat/NUnicodeDigit.js
11 com/stevesoft/pat/NUnicodeMath.js
12 com/stevesoft/pat/NUnicodePunct.js
13 com/stevesoft/pat/NUnicodeW.js
14 com/stevesoft/pat/NUnicodeWhite.js
15 com/stevesoft/pat/NoPattern.js
16 com/stevesoft/pat/NullPattern.js
17 com/stevesoft/pat/Or.js
18 com/stevesoft/pat/OrMark.js
19 com/stevesoft/pat/Pattern.js
20 com/stevesoft/pat/PatternSub.js
21 com/stevesoft/pat/Pthings.js
22 com/stevesoft/pat/Range.js
23 com/stevesoft/pat/RegOpt.js
24 com/stevesoft/pat/RegRes.js
25 com/stevesoft/pat/Regex.js
26 com/stevesoft/pat/ReplaceRule.js
27 com/stevesoft/pat/Rthings.js
28 com/stevesoft/pat/Skip.js
29 com/stevesoft/pat/StrPos.js
30 com/stevesoft/pat/StringLike.js
31 com/stevesoft/pat/StringRule.js
32 com/stevesoft/pat/SubMark.js
33 com/stevesoft/pat/UniValidator.js
34 com/stevesoft/pat/UnicodeAlpha.js
35 com/stevesoft/pat/UnicodeCurrency.js
36 com/stevesoft/pat/UnicodeDigit.js
37 com/stevesoft/pat/UnicodeLower.js
38 com/stevesoft/pat/UnicodeMath.js
39 com/stevesoft/pat/UnicodePunct.js
40 com/stevesoft/pat/UnicodeUpper.js
41 com/stevesoft/pat/UnicodeW.js
42 com/stevesoft/pat/UnicodeWhite.js
43 com/stevesoft/pat/Validator.js
44 com/stevesoft/pat/oneChar.js
45 com/stevesoft/pat/parsePerl.js
46 com/stevesoft/pat/patInf.js
47 com/stevesoft/pat/patInt.js
48 com/stevesoft/pat/wrap/StringWrap.js
49 intervalstore/api/IntervalI.js
50 intervalstore/api/IntervalStoreI.js
51 intervalstore/impl/BinarySearcher.js
52 intervalstore/impl/IntervalStore.js
53 intervalstore/impl/NCList.js
54 intervalstore/impl/NCNode.js
55 jalview/analysis/GeneticCodeI.js
56 jalview/analysis/GeneticCodes.js
57 jalview/analysis/SequenceIdMatcher.js
58 jalview/api/DBRefEntryI.js
59 jalview/api/SequenceStructureBinding.js
60 jalview/api/structures/JalviewStructureDisplayI.js
61 jalview/datamodel/DBRefEntry.js
62 jalview/datamodel/Mapping.js
63 jalview/datamodel/StructureViewerModel.js
64 jalview/datamodel/features/FeatureAttributes.js
65 jalview/ext/jmol/JalviewJmolBinding.js
66 jalview/ext/jmol/JmolCommands.js
67 jalview/ext/jmol/JmolParser.js
68 jalview/gui/AppJmol.js
69 jalview/gui/AppJmolBinding.js
70 jalview/gui/SliderPanel.js
71 jalview/gui/StructureViewer.js
72 jalview/gui/StructureViewerBase.js
73 jalview/io/JalviewFileChooser.js
74 jalview/io/JalviewFileFilter.js
75 jalview/io/JalviewFileView.js
76 jalview/io/NewickFile.js
77 jalview/io/StructureFile.js
78 jalview/jbgui/GSliderPanel.js
79 jalview/jbgui/GStructureViewer.js
80 jalview/renderer/seqfeatures/FeatureColourFinder.js
81 jalview/schemes/IdColourScheme.js
82 jalview/structure/StructureListener.js
83 jalview/structure/StructureMapping.js
84 jalview/structure/StructureMappingcommandSet.js
85 jalview/structures/models/AAStructureBindingModel.js
86 jalview/structures/models/SequenceStructureBindingModel.js
87 jalview/util/CaseInsensitiveString.js
88 jalview/util/LinkedIdentityHashSet.js
89 jalview/util/MapList.js
90 jalview/util/dialogrunner/DialogRunnerI.js
91 jalview/workers/ComplementConsensusThread.js
92 jalview/workers/StrucConsensusThread.js
93 java/awt/datatransfer/DataFlavor.js
94 java/awt/datatransfer/MimeType.js
95 java/awt/datatransfer/MimeTypeParameterList.js
96 java/awt/datatransfer/Transferable.js
97 java/awt/dnd/DropTargetDropEvent.js
98 java/awt/dnd/DropTargetEvent.js
99 java/awt/dnd/peer/DropTargetContextPeer.js
100 java/awt/font/TextAttribute.js
101 java/awt/image/ImageConsumer.js
102 java/awt/image/ImageProducer.js
103 java/awt/image/PixelGrabber.js
104 java/io/BufferedWriter.js
105 java/io/ByteArrayOutputStream.js
106 java/io/FileOutputStream.js
107 java/io/FilenameFilter.js
108 java/io/FilterOutputStream.js
109 java/io/OutputStream.js
110 java/io/OutputStreamWriter.js
111 java/io/PrintStream.js
112 java/io/PrintWriter.js
113 java/io/StringReader.js
114 java/io/StringWriter.js
116 java/util/function/Function.js
117 javajs/api/BytePoster.js
118 javajs/api/GenericOutputChannel.js
120 javajs/awt/FontManager.js
125 javajs/util/LimitedLineReader.js
137 javax/swing/CellRendererPane.js
138 javax/swing/DefaultListSelectionModel.js
139 javax/swing/DropMode.js
140 javax/swing/JFileChooser.js
142 javax/swing/ListSelectionModel.js
143 javax/swing/Spring.js
144 javax/swing/SpringLayout.js
145 javax/swing/event/ListSelectionListener.js
146 javax/swing/event/MouseInputListener.js
147 javax/swing/filechooser/FileFilter.js
148 javax/swing/filechooser/FileView.js
149 javax/swing/plaf/InputMapUIResource.js
154 org/jmol/adapter/readers/pdb/PdbReader.js
155 org/jmol/adapter/smarter/Atom.js
156 org/jmol/adapter/smarter/AtomIterator.js
157 org/jmol/adapter/smarter/AtomSetCollection.js
158 org/jmol/adapter/smarter/AtomSetCollectionReader.js
159 org/jmol/adapter/smarter/AtomSetObject.js
160 org/jmol/adapter/smarter/Bond.js
161 org/jmol/adapter/smarter/BondIterator.js
162 org/jmol/adapter/smarter/Resolver.js
163 org/jmol/adapter/smarter/SmarterJmolAdapter.js
164 org/jmol/adapter/smarter/Structure.js
165 org/jmol/adapter/smarter/StructureIterator.js
166 org/jmol/api/AtomIndexIterator.js
167 org/jmol/api/EventManager.js
168 org/jmol/api/GenericFileInterface.js
169 org/jmol/api/GenericMouseInterface.js
170 org/jmol/api/GenericPlatform.js
171 org/jmol/api/Interface.js
172 org/jmol/api/JmolAdapter.js
173 org/jmol/api/JmolAdapterAtomIterator.js
174 org/jmol/api/JmolAdapterBondIterator.js
175 org/jmol/api/JmolAdapterStructureIterator.js
176 org/jmol/api/JmolCallbackListener.js
177 org/jmol/api/JmolGraphicsInterface.js
178 org/jmol/api/JmolMeasurementClient.js
179 org/jmol/api/JmolPropertyManager.js
180 org/jmol/api/JmolRendererInterface.js
181 org/jmol/api/JmolRepaintManager.js
182 org/jmol/api/JmolScriptEvaluator.js
183 org/jmol/api/JmolScriptFunction.js
184 org/jmol/api/JmolScriptManager.js
185 org/jmol/api/JmolSelectionListener.js
186 org/jmol/api/JmolStatusListener.js
187 org/jmol/api/JmolViewer.js
188 org/jmol/api/PlatformViewer.js
189 org/jmol/api/SymmetryInterface.js
190 org/jmol/api/Translator.js
191 org/jmol/atomdata/AtomDataServer.js
192 org/jmol/atomdata/RadiusData.js
193 org/jmol/awt/AwtFile.js
194 org/jmol/awt/AwtFont.js
195 org/jmol/awt/Display.js
196 org/jmol/awt/Image.js
197 org/jmol/awt/Mouse.js
198 org/jmol/awt/Platform.js
199 org/jmol/bspt/Bspf.js
200 org/jmol/bspt/Bspt.js
201 org/jmol/bspt/CubeIterator.js
202 org/jmol/bspt/Element.js
203 org/jmol/bspt/Leaf.js
204 org/jmol/bspt/Node.js
211 org/jmol/g3d/CylinderRenderer.js
212 org/jmol/g3d/G3DRenderer.js
213 org/jmol/g3d/Graphics3D.js
214 org/jmol/g3d/HermiteRenderer.js
215 org/jmol/g3d/LineRenderer.js
216 org/jmol/g3d/Pixelator.js
217 org/jmol/g3d/Platform3D.js
218 org/jmol/g3d/PrecisionRenderer.js
219 org/jmol/g3d/SphereRenderer.js
220 org/jmol/g3d/TextRenderer.js
221 org/jmol/g3d/TextString.js
222 org/jmol/g3d/TriangleRenderer.js
224 org/jmol/i18n/Language.js
225 org/jmol/i18n/Resource.js
226 org/jmol/io/FileReader.js
227 org/jmol/modelset/Atom.js
228 org/jmol/modelset/AtomCollection.js
229 org/jmol/modelset/AtomIteratorWithinModel.js
230 org/jmol/modelset/Bond.js
231 org/jmol/modelset/BondCollection.js
232 org/jmol/modelset/BondIterator.js
233 org/jmol/modelset/BondIteratorSelected.js
234 org/jmol/modelset/Chain.js
235 org/jmol/modelset/Group.js
236 org/jmol/modelset/LabelToken.js
237 org/jmol/modelset/Measurement.js
238 org/jmol/modelset/MeasurementData.js
239 org/jmol/modelset/Model.js
240 org/jmol/modelset/ModelLoader.js
241 org/jmol/modelset/ModelSet.js
242 org/jmol/modelset/Orientation.js
243 org/jmol/modelset/Structure.js
244 org/jmol/modelset/Text.js
245 org/jmol/modelset/TickInfo.js
246 org/jmol/modelsetbio/AlphaMonomer.js
247 org/jmol/modelsetbio/AlphaPolymer.js
248 org/jmol/modelsetbio/AminoMonomer.js
249 org/jmol/modelsetbio/AminoPolymer.js
250 org/jmol/modelsetbio/BioModel.js
251 org/jmol/modelsetbio/BioModelSet.js
252 org/jmol/modelsetbio/BioPolymer.js
253 org/jmol/modelsetbio/BioResolver.js
254 org/jmol/modelsetbio/Helix.js
255 org/jmol/modelsetbio/Monomer.js
256 org/jmol/modelsetbio/ProteinStructure.js
257 org/jmol/modelsetbio/Sheet.js
258 org/jmol/render/BallsRenderer.js
259 org/jmol/render/BbcageRenderer.js
260 org/jmol/render/CageRenderer.js
261 org/jmol/render/FontLineShapeRenderer.js
262 org/jmol/render/FrankRenderer.js
263 org/jmol/render/HoverRenderer.js
264 org/jmol/render/LabelsRenderer.js
265 org/jmol/render/MeasuresRenderer.js
266 org/jmol/render/RepaintManager.js
267 org/jmol/render/ShapeRenderer.js
268 org/jmol/render/SticksRenderer.js
269 org/jmol/render/TextRenderer.js
270 org/jmol/render/UccageRenderer.js
271 org/jmol/renderbio/BioShapeRenderer.js
272 org/jmol/renderbio/CartoonRenderer.js
273 org/jmol/renderbio/RocketsRenderer.js
274 org/jmol/renderbio/StrandsRenderer.js
275 org/jmol/script/ContextToken.js
276 org/jmol/script/SV.js
277 org/jmol/script/ScriptCompiler.js
278 org/jmol/script/ScriptContext.js
279 org/jmol/script/ScriptError.js
280 org/jmol/script/ScriptEval.js
281 org/jmol/script/ScriptExpr.js
282 org/jmol/script/ScriptFlowContext.js
283 org/jmol/script/ScriptFunction.js
284 org/jmol/script/ScriptManager.js
285 org/jmol/script/ScriptMathProcessor.js
286 org/jmol/script/ScriptParam.js
287 org/jmol/script/ScriptTokenParser.js
289 org/jmol/scriptext/CmdExt.js
290 org/jmol/scriptext/MathExt.js
291 org/jmol/scriptext/ScriptExt.js
292 org/jmol/shape/AtomShape.js
293 org/jmol/shape/Balls.js
294 org/jmol/shape/Bbcage.js
295 org/jmol/shape/FontLineShape.js
296 org/jmol/shape/Frank.js
297 org/jmol/shape/Hover.js
298 org/jmol/shape/Labels.js
299 org/jmol/shape/Measures.js
300 org/jmol/shape/Mesh.js
301 org/jmol/shape/Shape.js
302 org/jmol/shape/Sticks.js
303 org/jmol/shape/TextShape.js
304 org/jmol/shape/Uccage.js
305 org/jmol/shapebio/BioShape.js
306 org/jmol/shapebio/BioShapeCollection.js
307 org/jmol/shapebio/Cartoon.js
308 org/jmol/shapebio/Rockets.js
309 org/jmol/symmetry/Symmetry.js
310 org/jmol/symmetry/SymmetryInfo.js
311 org/jmol/symmetry/UnitCell.js
312 org/jmol/thread/HoverWatcherThread.js
313 org/jmol/thread/JmolThread.js
314 org/jmol/util/BSUtil.js
315 org/jmol/util/BoxInfo.js
317 org/jmol/util/ColorEncoder.js
318 org/jmol/util/CommandHistory.js
319 org/jmol/util/DefaultLogger.js
320 org/jmol/util/Edge.js
321 org/jmol/util/Elements.js
322 org/jmol/util/Escape.js
323 org/jmol/util/GData.js
324 org/jmol/util/Geodesic.js
325 org/jmol/util/Int2IntHash.js
326 org/jmol/util/Int2IntHashEntry.js
327 org/jmol/util/Logger.js
328 org/jmol/util/LoggerInterface.js
329 org/jmol/util/MeshSurface.js
330 org/jmol/util/Node.js
331 org/jmol/util/Normix.js
332 org/jmol/util/Point3fi.js
333 org/jmol/util/Rectangle.js
334 org/jmol/util/Rgb16.js
335 org/jmol/util/Shader.js
336 org/jmol/util/SimpleEdge.js
337 org/jmol/util/SimpleNode.js
338 org/jmol/util/SimpleUnitCell.js
339 org/jmol/util/TempArray.js
340 org/jmol/viewer/ActionManager.js
341 org/jmol/viewer/AnimationManager.js
342 org/jmol/viewer/ColorManager.js
343 org/jmol/viewer/FileManager.js
344 org/jmol/viewer/Gesture.js
345 org/jmol/viewer/GlobalSettings.js
346 org/jmol/viewer/JC.js
347 org/jmol/viewer/ModelManager.js
348 org/jmol/viewer/MotionPoint.js
349 org/jmol/viewer/MouseState.js
350 org/jmol/viewer/PropertyManager.js
351 org/jmol/viewer/SelectionManager.js
352 org/jmol/viewer/ShapeManager.js
353 org/jmol/viewer/StateManager.js
354 org/jmol/viewer/StatusManager.js
355 org/jmol/viewer/TransformManager.js
356 org/jmol/viewer/Viewer.js
357 org/jmol/viewer/binding/Binding.js
358 org/jmol/viewer/binding/JmolBinding.js
359 sun/awt/image/OffScreenImageSource.js
360 sun/font/AttributeValues.js
361 sun/font/EAttribute.js
362 sun/swing/StringUIClientPropertyKey.js
363 sun/swing/SwingUtilities2.js
364 sun/swing/UIClientPropertyKey.js
366 swingjs/JSTempFile.js
367 swingjs/plaf/BasicHTML.js
368 swingjs/plaf/JSListUI.js