2 * Jalview - A Sequence Alignment Editor and Viewer
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3 * Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
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5 * This program is free software; you can redistribute it and/or
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6 * modify it under the terms of the GNU General Public License
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7 * as published by the Free Software Foundation; either version 2
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8 * of the License, or (at your option) any later version.
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10 * This program is distributed in the hope that it will be useful,
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11 * but WITHOUT ANY WARRANTY; without even the implied warranty of
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12 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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13 * GNU General Public License for more details.
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15 * You should have received a copy of the GNU General Public License
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16 * along with this program; if not, write to the Free Software
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17 * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
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19 package jalview.datamodel;
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24 public class HistoryItem {
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25 public static final int EDIT = 0;
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26 public static final int SORT = 1;
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27 public static final int HIDE = 2;
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28 public static final int PASTE = 3;
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35 public HistoryItem(String description, AlignmentI al, int type) {
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37 this.description = description;
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38 sequences = new Vector();
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39 alignIndex = new Vector();
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40 hiddenSeqs = new Vector();
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42 for (int i = 0; i < al.getHeight(); i++) {
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43 SequenceI seq = al.getSequenceAt(i);
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44 sequences.addElement(seq);
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45 alignIndex.addElement(i + "");
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46 hiddenSeqs.addElement(seq.getSequence().toString());
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50 public int getType() {
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54 public Vector getSequences() {
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58 public String getDescription() {
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62 public Vector getHidden() {
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66 public int getAlignIndex(int seq) {
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67 return Integer.parseInt(alignIndex.elementAt(seq).toString());
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