1 <!DOCTYPE html SYSTEM "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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2 <html xmlns="http://www.w3.org/1999/xhtml">
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4 Embedded viewing of Alignments
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7 <h1>Embedded viewing of Alignments</h1>
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8 <p>The alignment below was generated from the following files:
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10 <li><a href="plantfdx.fa">plantfdx.fa</a> - Alignment file in
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12 <li><a href="plantfdx.features">plantfdx.features</a> - Jalview
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13 Format Sequence Features file</li>
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14 <li><a href="plantfdx.annotations">plantfdx.annotations</a> -
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15 Jalview Alignment Annotations File</li>
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17 <applet code="jalview.bin.JalviewLite"
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18 width="756" height="560" archive="jalviewApplet.jar">
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19 <param name="file" value="plantfdx.fa">
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20 <param name="annotations" value="plantfdx.annotations">
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21 <param name="features" value="plantfdx.features">
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22 <param name="embedded" value="true">
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23 <param name="userDefinedColour"
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24 value="C=yellow; R,K,H=FF5555; D,E=5555FF">
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25 <param name="showFullId" value="false">
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26 <param name="RGB" value="F2F2FF">
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27 <param name="linkLabel_1" value="SRS">
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28 <param name="linkUrl_1"
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29 value="http://srs.ebi.ac.uk/srs7bin/cgi-bin/wgetz?-e+[uniprot-all:$SEQUENCE_ID$]+-vn+2">
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30 <param name="linkLabel_2" value="Uniprot">
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31 <param name="linkUrl_2"
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32 value="http://us.expasy.org/cgi-bin/niceprot.pl?$SEQUENCE_ID$">
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33 <param name="APPLICATION_URL"
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34 value="http://www.jalview.org/services/launchApp">
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