examples/embeddedWJmol.html

   1 <!DOCTYPE html PUBLIC "-//W3C//DTD HTML+RDFa 1.1//EN">
   2 <!--
   3  * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
   4  * Copyright (C) $$Year-Rel$$ The Jalview Authors
   5  *
   6  * This file is part of Jalview.
   7  *
   8  * Jalview is free software: you can redistribute it and/or
   9  * modify it under the terms of the GNU General Public License
  10  * as published by the Free Software Foundation, either version 3
  11  * of the License, or (at your option) any later version.
  12  *
  13  * Jalview is distributed in the hope that it will be useful, but
  14  * WITHOUT ANY WARRANTY; without even the implied warranty
  15  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
  16  * PURPOSE.  See the GNU General Public License for more details.
  17  *
  18  * You should have received a copy of the GNU General Public License
  19  * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
  20  * The Jalview Authors are detailed in the 'AUTHORS' file.
  21  -->
  22  <html lang="en" dir="ltr" version="HTML+RDFa 1.1"
  23         xmlns:content="http://purl.org/rss/1.0/modules/content/"
  24         xmlns:dc="http://purl.org/dc/terms/"
  25         xmlns:foaf="http://xmlns.com/foaf/0.1/" xmlns:og="http://ogp.me/ns#"
  26         xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
  27         xmlns:sioc="http://rdfs.org/sioc/ns#"
  28         xmlns:sioct="http://rdfs.org/sioc/types#"
  29         xmlns:skos="http://www.w3.org/2004/02/skos/core#"
  30         xmlns:xsd="http://www.w3.org/2001/XMLSchema#">
  31 <head profile="http://www.w3.org/1999/xhtml/vocab">
  32 <meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
  33 <link rel="shortcut icon"
  34         href="http://www.jalview.org/sites/all/themes/jalview/favicon.ico"
  35         type="image/vnd.microsoft.icon" />
  36 <meta name="viewport"
  37         content="width=device-width, initial-scale=1, maximum-scale=1, minimum-scale=1, user-scalable=no" />
  38 <meta content="" about="/About" property="dc:title" />
  39 <link rel="shortlink" href="/node/18" />
  40 <meta name="Generator" content="Drupal 7 (http://drupal.org)" />
  41 <link rel="canonical" href="/About" />
  42 <title>Development | jalview.org</title>
  43 <link type="text/css" rel="stylesheet"
  44         href="http://www.jalview.org/sites/jalview.aegir-prod-6.lifesci.dundee.ac.uk/files/css/css_pbm0lsQQJ7A7WCCIMgxLho6mI_kBNgznNUWmTWcnfoE.css"
  45         media="all" />
  46 <link type="text/css" rel="stylesheet"
  47         href="http://www.jalview.org/sites/jalview.aegir-prod-6.lifesci.dundee.ac.uk/files/css/css_gUtVu-PFpNy2iKRzspQnPE665qK-eDx99tAc6O2EKBs.css"
  48         media="all" />
  49 <link type="text/css" rel="stylesheet"
  50         href="http://www.jalview.org/sites/jalview.aegir-prod-6.lifesci.dundee.ac.uk/files/css/css_HByEx9XzXH_VOfr3lfyJmXRKhQdq8UyyslSu9odJFaw.css"
  51         media="all" />
  52 <link type="text/css" rel="stylesheet"
  53         href="http://www.jalview.org/sites/jalview.aegir-prod-6.lifesci.dundee.ac.uk/files/css/css_Rj_Ai4KdTE0qt75bSUOfQPNak90tBSJRVjZIjglGhlM.css"
  54         media="all" />
  55
  56 <!--[if lte IE 6]>
  57 <link type="text/css" rel="stylesheet" href="http://www.jalview.org/sites/all/themes/jalview/css/ie6.css?nqc8th" media="all" />
  58 <![endif]-->
  59
  60 <!--[if lte IE 7]>
  61 <link type="text/css" rel="stylesheet" href="http://www.jalview.org/sites/all/themes/jalview/css/ie7.css?nqc8th" media="all" />
  62 <![endif]-->
  63
  64 <!--[if lte IE 8]>
  65 <link type="text/css" rel="stylesheet" href="http://www.jalview.org/sites/all/themes/jalview/css/ie8.css?nqc8th" media="all" />
  66 <![endif]-->
  67
  68 <!--[if (lt IE 9)&(!IEMobile)]>
  69 <link type="text/css" rel="stylesheet" href="http://www.jalview.org/sites/jalview.aegir-prod-6.lifesci.dundee.ac.uk/files/css/css_ybf1eloQwwauLFbDPh5-J2RvDVEM4Gsh1NsAC0ynfNs.css" media="all" />
  70 <![endif]-->
  71
  72 <!--[if gte IE 9]><!-->
  73 <link type="text/css" rel="stylesheet"
  74         href="http://www.jalview.org/sites/jalview.aegir-prod-6.lifesci.dundee.ac.uk/files/css/css_kD8qBi2CLfQkl16-SgdHuwlYq_NUjXsjCxmpeidlT0I.css"
  75         media="all" />
  76 <!--<![endif]-->
  77 <script type="text/javascript">
  78 <!--//--><![CDATA[//><!--
  79         document.cookie = 'adaptive_image=' + Math.max(screen.width, screen.height)
  80                         + '; path=/';
  81         //--><!]]>
  82 </script>
  83 <script type="text/javascript"
  84         src="http://www.jalview.org/sites/jalview.aegir-prod-6.lifesci.dundee.ac.uk/files/js/js_0gj6QcpfRH2jzTbCQqf7kEkm4MXY0UA_sRhwPc8jC1o.js"></script>
  85 <script type="text/javascript"
  86         src="http://www.jalview.org/sites/all/modules/lightbox2/js/lightbox.js?1434966756"></script>
  87 <script type="text/javascript"
  88         src="http://www.jalview.org/sites/jalview.aegir-prod-6.lifesci.dundee.ac.uk/files/js/js_SoFDHsgxDY2cLYbZ6HeW4SLlU_sLxsgGT6tSFwfsHGY.js"></script>
  89 <script type="text/javascript"
  90         src="http://www.jalview.org/sites/all/modules/mobile_navigation/js/mobile_menu.js?nqc8th"></script>
  91 <script type="text/javascript"
  92         src="http://www.jalview.org/sites/all/modules/mobile_navigation/mobile_navigation.js?nqc8th"></script>
  93 <script type="text/javascript"
  94         src="http://www.jalview.org/sites/jalview.aegir-prod-6.lifesci.dundee.ac.uk/files/js/js_IDBX5SzkJ9gGNq7x-qOE_2DZsexqguTJQGMKvi4w-Uw.js"></script>
  95 <script type="text/javascript">
  96 <!--//--><![CDATA[//><!--
  97         var _gaq = _gaq || [];
  98         _gaq.push([ "_setAccount", "UA-9060947-1" ]);
  99         _gaq.push([ "_trackPageview" ]);
 100         (function() {
 101                 var ga = document.createElement("script");
 102                 ga.type = "text/javascript";
 103                 ga.async = true;
 104                 ga.src = ("https:" == document.location.protocol ? "https://ssl"
 105                                 : "http://www")
 106                                 + ".google-analytics.com/ga.js";
 107                 var s = document.getElementsByTagName("script")[0];
 108                 s.parentNode.insertBefore(ga, s);
 109         })();
 110         //--><!]]>
 111 </script>
 112 <script type="text/javascript"
 113         src="http://www.jalview.org/sites/jalview.aegir-prod-6.lifesci.dundee.ac.uk/files/js/js_tnUY-Xr0uSK3E1mkrZ6ON7OmxH4PiVjShebnFJ8E-9c.js"></script>
 114 <script type="text/javascript"
 115         src="http://www.jalview.org/sites/jalview.aegir-prod-6.lifesci.dundee.ac.uk/files/js/js_43n5FBy8pZxQHxPXkf-sQF7ZiacVZke14b0VlvSA554.js"></script>
 116
 117 <script type="text/javascript">
 118 <!--//--><![CDATA[//><!--
 119 jQuery.extend(Drupal.settings, {"basePath":"\/","pathPrefix":"","ajaxPageState":{"theme":"jalview","theme_token":"wip-WGy4TPV1wdu4Sdq6IXFdriaYrLsrzHuYbaCEpD8","js":{"0":1,"sites\/all\/modules\/jquery_update\/replace\/jquery\/1.7\/jquery.min.js":1,"misc\/jquery.once.js":1,"misc\/drupal.js":1,"sites\/all\/modules\/lightbox2\/js\/lightbox.js":1,"sites\/all\/modules\/nice_menus\/superfish\/js\/superfish.js":1,"sites\/all\/modules\/nice_menus\/superfish\/js\/jquery.bgiframe.min.js":1,"sites\/all\/modules\/nice_menus\/superfish\/js\/jquery.hoverIntent.minified.js":1,"sites\/all\/modules\/nice_menus\/nice_menus.js":1,"sites\/all\/modules\/mobile_navigation\/js\/mobile_menu.js":1,"sites\/all\/modules\/mobile_navigation\/mobile_navigation.js":1,"sites\/all\/modules\/google_analytics\/googleanalytics.js":1,"1":1,"sites\/all\/themes\/jalview\/js\/jalview_ga_event_tracking.js":1,"sites\/all\/themes\/omega\/omega\/js\/jquery.formalize.js":1,"sites\/all\/themes\/omega\/omega\/js\/omega-mediaqueries.js":1},"css":{"modules\/system\/system.base.css":1,"modules\/system\/system.menus.css":1,"modules\/system\/system.messages.css":1,"modules\/system\/system.theme.css":1,"sites\/all\/modules\/adaptive_image\/css\/adaptive-image.css":1,"sites\/all\/modules\/date\/date_api\/date.css":1,"sites\/all\/modules\/date\/date_popup\/themes\/datepicker.1.7.css":1,"modules\/field\/theme\/field.css":1,"modules\/node\/node.css":1,"modules\/poll\/poll.css":1,"modules\/search\/search.css":1,"modules\/user\/user.css":1,"sites\/all\/modules\/views\/css\/views.css":1,"sites\/all\/modules\/ctools\/css\/ctools.css":1,"sites\/all\/modules\/lightbox2\/css\/lightbox.css":1,"sites\/all\/modules\/nice_menus\/nice_menus.css":1,"sites\/all\/modules\/nice_menus\/nice_menus_default.css":1,"sites\/all\/modules\/mobile_navigation\/mobile_navigation.css":1,"sites\/all\/themes\/omega\/alpha\/css\/alpha-reset.css":1,"sites\/all\/themes\/omega\/alpha\/css\/alpha-mobile.css":1,"sites\/all\/themes\/omega\/alpha\/css\/alpha-alpha.css":1,"sites\/all\/themes\/omega\/omega\/css\/formalize.css":1,"sites\/all\/themes\/omega\/omega\/css\/omega-text.css":1,"sites\/all\/themes\/omega\/omega\/css\/omega-branding.css":1,"sites\/all\/themes\/omega\/omega\/css\/omega-menu.css":1,"sites\/all\/themes\/omega\/omega\/css\/omega-forms.css":1,"sites\/all\/themes\/omega\/omega\/css\/omega-visuals.css":1,"sites\/all\/themes\/jalview\/css\/mobile.css":1,"sites\/all\/themes\/jalview\/css\/global.css":1,"sites\/all\/themes\/jalview\/css\/ie6.css":1,"sites\/all\/themes\/jalview\/css\/ie7.css":1,"sites\/all\/themes\/jalview\/css\/ie8.css":1,"ie::normal::sites\/all\/themes\/jalview\/css\/jalview-alpha-default.css":1,"ie::normal::sites\/all\/themes\/jalview\/css\/jalview-alpha-default-normal.css":1,"ie::normal::sites\/all\/themes\/omega\/alpha\/css\/grid\/alpha_default\/normal\/alpha-default-normal-12.css":1,"narrow::sites\/all\/themes\/jalview\/css\/jalview-alpha-default.css":1,"narrow::sites\/all\/themes\/jalview\/css\/jalview-alpha-default-narrow.css":1,"sites\/all\/themes\/omega\/alpha\/css\/grid\/alpha_default\/narrow\/alpha-default-narrow-12.css":1,"normal::sites\/all\/themes\/jalview\/css\/jalview-alpha-default.css":1,"normal::sites\/all\/themes\/jalview\/css\/jalview-alpha-default-normal.css":1,"sites\/all\/themes\/omega\/alpha\/css\/grid\/alpha_default\/normal\/alpha-default-normal-12.css":1,"wide::sites\/all\/themes\/jalview\/css\/jalview-alpha-default.css":1,"wide::sites\/all\/themes\/jalview\/css\/jalview-alpha-default-wide.css":1,"sites\/all\/themes\/omega\/alpha\/css\/grid\/alpha_default\/wide\/alpha-default-wide-12.css":1}},"lightbox2":{"rtl":0,"file_path":"\/(\\w\\w\/)public:\/","default_image":"\/sites\/all\/modules\/lightbox2\/images\/brokenimage.jpg","border_size":10,"font_color":"000","box_color":"fff","top_position":"","overlay_opacity":"0.8","overlay_color":"000","disable_close_click":1,"resize_sequence":0,"resize_speed":100,"fade_in_speed":100,"slide_down_speed":100,"use_alt_layout":0,"disable_resize":0,"disable_zoom":0,"force_show_nav":0,"show_caption":1,"loop_items":0,"node_link_text":"View Image Details","node_link_target":0,"image_count":"Image !current of !total","video_count":"Video !current of !total","page_count":"Page !current of !total","lite_press_x_close":"press \u003Ca href=\u0022#\u0022 onclick=\u0022hideLightbox(); return FALSE;\u0022\u003E\u003Ckbd\u003Ex\u003C\/kbd\u003E\u003C\/a\u003E to close","download_link_text":"","enable_login":false,"enable_contact":false,"keys_close":"c x 27","keys_previous":"p 37","keys_next":"n 39","keys_zoom":"z","keys_play_pause":"32","display_image_size":"original","image_node_sizes":"()","trigger_lightbox_classes":"","trigger_lightbox_group_classes":"","trigger_slideshow_classes":"","trigger_lightframe_classes":"","trigger_lightframe_group_classes":"","custom_class_handler":0,"custom_trigger_classes":"","disable_for_gallery_lists":true,"disable_for_acidfree_gallery_lists":true,"enable_acidfree_videos":true,"slideshow_interval":5000,"slideshow_automatic_start":true,"slideshow_automatic_exit":true,"show_play_pause":true,"pause_on_next_click":false,"pause_on_previous_click":true,"loop_slides":false,"iframe_width":600,"iframe_height":400,"iframe_border":1,"enable_video":0},"nice_menus_options":{"delay":"800","speed":"fast"},"mobile_navigation":{"breakpoint":"all and (min-width: 740px) and (min-device-width: 740px), (max-device-width: 800px) and (min-width: 740px) and (orientation:landscape)","menuSelector":".primary-nav","menuPlugin":"accordion","showEffect":"expand_down","showItems":"all","tabHandler":1,"menuWidth":"100","specialClasses":0,"mainPageSelector":"#page","useMask":1,"menuLabel":"","expandActive":1},"googleanalytics":{"trackOutbound":1,"trackMailto":1,"trackDownload":1,"trackDownloadExtensions":"7z|aac|arc|arj|asf|asx|avi|bin|csv|doc|exe|flv|gif|gz|gzip|hqx|jar|jpe?g|js|mp(2|3|4|e?g)|mov(ie)?|msi|msp|pdf|phps|png|ppt|qtm?|ra(m|r)?|sea|sit|tar|tgz|torrent|txt|wav|wma|wmv|wpd|xls|xml|z|zip"},"omega":{"layouts":{"primary":"normal","order":["narrow","normal","wide"],"queries":{"narrow":"all and (min-width: 740px) and (min-device-width: 740px), (max-device-width: 800px) and (min-width: 740px) and (orientation:landscape)","normal":"all and (min-width: 980px) and (min-device-width: 980px), all and (max-device-width: 1024px) and (min-width: 1024px) and (orientation:landscape)","wide":"all and (min-width: 1220px)"}}}});
 120 //--><!]]>
 121 </script>
 122 <!--[if lt IE 9]><script src="http://html5shiv.googlecode.com/svn/trunk/html5.js"></script><![endif]-->
 123
 124
 125 <script src="javascript/deployJava.js"></script>
 126 <script src="jmol/Jmol2.js"></script>
 127 <script src="javascript/jquery-1.4.4.min.js"></script>
 128 <script src="javascript/jquery.timer.js"></script>
 129 <script src="javascript/jquery.blockUI.js"></script>
 130 <script src="javascript/jshashtable-2.1.js" language="javascript"></script>
 131 <script src="javascript/jalview.js" language="javascript"></script>
 132 <script src="javascript/jvcontroller.js"> </script>
 133
 134
 135
 136 </head>
 137
 138
 139
 140 <div id="header"></div>
 141 <section id="section-content" class="section section-content">
 142         <div id="zone-content-wrapper"
 143                 class="zone-wrapper zone-content-wrapper clearfix">
 144
 145                 <div id="zone-content" class="zone zone-content clearfix container-12">
 146                         <!— — — — — — — — — — — side bar — — — — — — — — — — —>
 147                         <aside class="grid-3 region region-sidebar-first"
 148                                 id="region-sidebar-first">
 149                                 <div class="region-inner region-sidebar-first-inner">
 150                                         <section
 151                                                 class="block block-menu-block block-1 block-menu-block-1 odd"
 152                                                 id="block-menu-block-1">
 153                                                 <div class="block-inner clearfix">
 154                                                         <h2 class="block-title">
 155                                                                 <a href="/development" class="development active-trail">Development</a>
 156                                                         </h2>
 157                                                         <div class="content clearfix">
 158                                                                 <div class="menu-block-wrapper menu-block-1 menu-name-main-menu parent-mlid-0 menu-level-2">
 159                                                                     <div id="nav" class="nav">nav</div>
 160                                                                 </div>
 161                                                         </div>
 162                                                 </div>
 163                                         </section>
 164                                         <section
 165                                                 class="block block-menu-block block-2 block-menu-block-2 even"
 166                                                 id="block-menu-block-2">
 167                                                 <div class="block-inner clearfix">
 168                                                         <h2 class="block-title">
 169                                                                 <a href="/About" class="active-trail active">About</a>
 170                                                         </h2>
 171
 172                                                         <div class="content clearfix">
 173                                                                 <div
 174                                                                         class="menu-block-wrapper menu-block-2 menu-name-main-menu parent-mlid-0 menu-level-2">
 175                                                                         <div id="nav" class="nav">nav</div>
 176                                                                 </div>
 177                                                         </div>
 178                                                 </div>
 179                                         </section>
 180                                 </div>
 181                         </aside>
 182                         <!- — - - - - - - - - - - - - end of sidebar — — — — —>
 183
 184                         <div class="grid-9 region region-content" id="region-content">
 185                                 <div class="region-inner region-content-inner">
 186                                         <a id="main-content"></a>
 187                                         <div
 188                                                 class="block block-system block-main block-system-main odd block-without-title"
 189                                                 id="block-system-main">
 190                                                 <div class="block-inner clearfix">
 191                                                         <div class="content clearfix">
 192                                                                 <article about="/About" typeof="sioc:Item foaf:Document"
 193                                                                         class="node node-basic-page node-published node-not-promoted node-not-sticky author-admin odd clearfix"
 194                                                                         id="node-basic-page-18">
 195                                                                         <div class="content clearfix">
 196                                                                                 <div
 197                                                                                         class="field field-name-body field-type-text-with-summary field-label-hidden">
 198                                                                                         <div class="field-items">
 199                                                                                                 <div class="field-item even" property="content:encoded">
 200                                                                                                 <div id="content">
 201
 202
 203
 204
 205
 206
 207
 208 <div>
 209
 210
 211 <script language="JavaScript">
 212 // instead of this, we use a custom JmolApplet spec
 213 // jmolInitialize('jmol');
 214 jmolInitialize("","JmolApplet-14.6.4_2016.10.26.jar");
 215 </script>
 216 <script>
 217  var loglevel=1;
 218  function dbg(lvl,string) {
 219   if (_console && lvl<=loglevel) {_console.value += string + "\n";}
 220  }
 221  var _lastTime=new Date();
 222  var _path;
 223  var _datazip;
 224  var _zip;
 225  var alignA;
 226  var alignB;
 227  var featuresA;
 228  var featuresB;
 229  var pairs;
 230  var atompairs;
 231  var structdata;
 232  var jmolview;
 233  var jvstructassoc;
 234  var modeltofiles = new Array();
 235
 236  function lJvA() {
 237   jvfollower = document.getElementById("jvA");
 238   setConsole(document.getElementById("stdout"));
 239   linkJvJmol(jvfollower, "jmolView", modeltofiles);
 240  };
 241
 242  var _jvA=new Object();
 243  _jvA.attributes = {
 244   code : 'jalview.bin.JalviewLite',
 245   archive : 'jalviewApplet.jar,JmolApplet-14.6.4_2016.10.26.jar,java-json.jar,json_simple-1.1.jar',
 246   width : '500',
 247   height : '350',
 248   mayscript : 'True',
 249   scriptable: 'True',
 250   id : 'jvA'
 251  };
 252  _jvA.parameters = {
 253    java_arguments : "-Xmx256m",
 254   externalstructureviewer : "true",
 255    oninit : "lJvA",
 256   automaticScrolling : "true",
 257 //  <!-- defaultColour : "Strand Propensity", -->
 258   file : "uniref50_mz.fa",
 259
 260   relaxedidmatch : "true",
 261   debug : "true",
 262   wrap : "false",
 263   // separator : "^",
 264   showAnnotation : "false",
 265   embedded : "true",
 266   showFullId : "false",
 267   RGB : "F2F2FF",
 268   linkLabel_1 : "EMBL-EBI Search",
 269   linkUrl_1 : "http://www.ebi.ac.uk/ebisearch/search.ebi?db=allebi&query=$SEQUENCE_ID$"
 270   ,
 271   linkLabel_2 : "Uniprot"
 272   ,
 273   linkUrl_2 : "http://www.uniprot.org/uniprot/$SEQUENCE_ID$",
 274   APPLICATION_URL : "http://www.jalview.org/services/launchApp",
 275   PDBfile : "1gaq.txt FER1_MAIZE",
 276   permissions : "sandbox"
 277  };
 278  jmolSetCallback("hoverCallback","_jmolhover");
 279   jmolSetCallback("pickCallback","_jmolpick");
 280   modeltofiles+="1gaq.txt";
 281 </script>
 282 <div style="width: 100%">
 283
 284 </div>
 285
 286 <!-- content template start -->
 287 <h2>Structure and Alignment</h2>
 288 <p>This demo shows how JalviewLite and Jmol can be integrated with the JalviewLite javascript library.</p>
 289
 290
 291 <div>
 292  <script>
 293   jmolApplet("500x500","zap; load FILE '1gaq.txt'; frame 0; background black; select all; wireframe off; spacefill off; cartoons; restrict; center *; set selectionhalos true;set hoverDelay 0.001; select 0","jmolView");
 294  </script>
 295 </div>
 296 <div>
 297 <applet
 298    code="jalview.bin.JalviewLite" width="500" height="350" id="jvA" mayscript="mayscript" archive="jalviewApplet.jar,JmolApplet-14.6.4_2016.10.26.jar,java-json.jar,json_simple-1.1.jar">
 299 <param name="permissions" value="sandbox"/>
 300 <param name="java_arguments" value="-Xmx256m"/>
 301 <param name="externalstructureviewer" value="true"/>
 302 <param name="oninit" value="lJvA"/>
 303 <param name="automaticScrolling" value="true"/>
 304 <param name="file" value="uniref50_mz.fa"/>
 305 <param name="relaxedidmatch" value="true"/>
 306 <param name="debug" value="true"/>
 307 <param name="wrap" value="false"/>
 308 <param name="showAnnotation" value="false"/>
 309 <param name="embedded" value="true"/>
 310 <param name="showFullId" value="false"/>
 311 <param name="RGB" value="F2F2FF"/>
 312 <param name="linkLabel_1" value="EMBL-EBI Search"/>
 313 <param name="linkUrl_1" value="http://www.ebi.ac.uk/ebisearch/search.ebi?db=allebi&query=$SEQUENCE_ID$"/>
 314 <param name="linkLabel_2" value="Uniprot"/>
 315 <param name="linkUrl_2" value="http://www.uniprot.org/uniprot/$SEQUENCE_ID$"/>
 316 <param name="APPLICATION_URL" value="http://www.jalview.org/services/launchApp"/>
 317 <param name="PDBfile" value="1gaq.txt FER1_MAIZE"/>
 318 </applet>
 319
 320 </div>
 321
 322 <!-- content template end -->
 323
 324
 325 </div>
 326
 327
 328
 329
 330
 331
 332
 333
 334
 335
 336 </div>
 337                                                                                                 </div>
 338                                                                                         </div>
 339                                                                                 </div>
 340                                                                         </div>
 341                                                                         <div class="clearfix">
 342                                                                                 <nav class="links node-links clearfix"></nav>
 343                                                                         </div>
 344                                                                 </article>
 345                                                         </div>
 346                                                 </div>
 347                                         </div>
 348                                 </div>
 349                         </div>
 350                 </div>
 351         </div>
 352 </section>
 353
 354 <div id="footer"></div>
 355
 356