JAL-2629 fix expected length error for hmmbuild by uniquifying sequences
[jalview.git] / examples / estrogenReceptorProtein.aln
1 CLUSTAL
2
3 UNIPROT|Q7LCB3/1-530 -------MDIKNSPSSLNSPSSYNCSQSILPLEHG-----------SIYIPSSYVDSHHE
4 UNIPROT|Q9VSE9/1-484 ----------------------------------M-----------SDGVSILHIKQEVD
5 UNIPROT|Q9IBD5/1-710 -----MDNNHQDKMESLYTPARASPTPDAESIKRARNLIKTYSESFGSYVEEIVRDDSNN
6 UNIPROT|Q7LCB3/1-530 -------MDIKNSPSSLNSPSSYNCSQSILPLEHG-----------SIYIPSSYVDSHHE
7 UNIPROT|Q9YGV9/1-848 MEIPVGLGGVSDATNAVFRGPYQNVFHSLQ----------------VAFQSHGAVSRSLD
8 UNIPROT|Q90ZM7/1-438 -----------------------------------------------------GVEFQLP
9 UNIPROT|Q91445/1-344 ------------------------------------------------------------
10 UNIPROT|Q9VSE9/1-484 ----------------------------------M-----------SDGVSILHIKQEVD
11 UNIPROT|Q90ZM8/1-554 ARGFSEAHGYEYSGASLYQPLPPSCTEFSI----------------GAHQQQQHQHQHHQ
12
13 UNIPROT|Q7LCB3/1-530 YPAM--------------------------------------------TFYSPAVMNYSI
14 UNIPROT|Q9VSE9/1-484 TPSA--------------------------------------------SCFSPSSKSTAT
15 UNIPROT|Q9IBD5/1-710 IQSLSSVPLLMRNFGNMDTLTCAPGSGSDSEIWKDFVVPGNSVVSKD-TCGHVEISTKAE
16 UNIPROT|Q7LCB3/1-530 YPAM--------------------------------------------TFYSPAVMNYSI
17 UNIPROT|Q9YGV9/1-848 FPNTKYGFLQNRHFCEMRQENKQPPCKGLGLFYGNHRNSDTGTNEDDIACFSRQSDAEAR
18 UNIPROT|Q90ZM7/1-438 YSASA-------------------------------------------TSFRPSVATSSA
19 UNIPROT|Q91445/1-344 ------------------------------------------------------------
20 UNIPROT|Q9VSE9/1-484 TPSA--------------------------------------------SCFSPSSKSTAT
21 UNIPROT|Q90ZM8/1-554 HQHQ--------------------------------------------QHHHQQQQQQPQ
22
23 UNIPROT|Q7LCB3/1-530 P---------SNVTNLEGGP-------GRQTTSPNVLWPTPGHLSPLVVHRQLSHLYAEP
24 UNIPROT|Q9VSE9/1-484 Q---------SGTNGLKSSP----------SVSPERQLCSS--TTSLSCDLHNVSLSNDG
25 UNIPROT|Q9IBD5/1-710 NLSWAAAPL-SREETLAKGTVTVPATVPKESFTATSNTSSASGIS--IKDEQQSLLKMEP
26 UNIPROT|Q7LCB3/1-530 P---------SNVTNLEGGP-------GRQTTSPNVLWPTPGHLSPLVVHRQLSHLYAEP
27 UNIPROT|Q9YGV9/1-848 PGIFSESSLDTGDEITCKLQSDNQGVRASGPLLPGSSGCNSGQKSSLACTSQQRETTSQS
28 UNIPROT|Q90ZM7/1-438 ----------SGISNFSNGN----------------------------------------
29 UNIPROT|Q91445/1-344 ------------------------------------------------------------
30 UNIPROT|Q9VSE9/1-484 Q---------SGTNGLKSSP----------SVSPERQLCSS--TTSLSCDLHNVSLSNDG
31 UNIPROT|Q90ZM8/1-554 P---------QQNGVLGEGQSSHLSYLPPSTELPQYVPSSPSAPYSMELGAGRPHGYDPG
32
33 UNIPROT|Q7LCB3/1-530 QKSPWCE---------------------------------------------------AR
34 UNIPROT|Q9VSE9/1-484 DS--------------------------------------------------------LK
35 UNIPROT|Q9IBD5/1-710 QSSDFCPYTANIPKLNP-----------------------------------------SY
36 UNIPROT|Q7LCB3/1-530 QKSPWCE---------------------------------------------------AR
37 UNIPROT|Q9YGV9/1-848 DTCAGESCSEHQATTISETARELCNAVSVSLGLNLDLNDMNDLSSNQISSTESDTSQAIY
38 UNIPROT|Q90ZM7/1-438 ----------------------------------------------------------NF
39 UNIPROT|Q91445/1-344 ------------------------------------------------------------
40 UNIPROT|Q9VSE9/1-484 DS--------------------------------------------------------LK
41 UNIPROT|Q90ZM8/1-554 PQSLYRGGVE------------------------------------------------SS
42
43 UNIPROT|Q7LCB3/1-530 SLEHTLPVNRETLKRKVSGNRCASPV----------------------------------
44 UNIPROT|Q9VSE9/1-484 GSGTSGGNGGGGGGGTSGGNATNASA----------------------------------
45 UNIPROT|Q9IBD5/1-710 LTNTASTKQLGYGEQPDTSAHSSPPA----------------------------------
46 UNIPROT|Q7LCB3/1-530 SLEHTLPVNRETLKRKVSGNRCASPV----------------------------------
47 UNIPROT|Q9YGV9/1-848 LFESSPGYTGVGLNALVRDCKCQSAREGTSTQQYDRGAMFKINRVNDLPLQPAPPRHTSI
48 UNIPROT|Q90ZM7/1-438 GFLSPNGVQQDGFPYPGFTSPAQSSV----------------------------------
49 UNIPROT|Q91445/1-344 ------------------------------------------------------------
50 UNIPROT|Q9VSE9/1-484 GSGTSGGNGGGGGGGTSGGNATNASA----------------------------------
51 UNIPROT|Q90ZM8/1-554 APPYSEQQQVVGGGGAMSAMGLTEPR----------------------------------
52
53 UNIPROT|Q7LCB3/1-530 ------------------------------------------------------------
54 UNIPROT|Q9VSE9/1-484 ------------------------------------------------------------
55 UNIPROT|Q9IBD5/1-710 QKIVLDTARYSADLCSDNPLPQATNIKTDPCSSFSSFVGEGILTRASMGYSQQAIQTLPV
56 UNIPROT|Q7LCB3/1-530 ------------------------------------------------------------
57 UNIPROT|Q9YGV9/1-848 SDAKWDMEAGLCAQMEHKDSEKCANMDGAHSTSVFSQFDQLLPVNASHYSQNVSVRVEPQ
58 UNIPROT|Q90ZM7/1-438 ------------------------------------------------------------
59 UNIPROT|Q91445/1-344 ------------------------------------------------------------
60 UNIPROT|Q9VSE9/1-484 ------------------------------------------------------------
61 UNIPROT|Q90ZM8/1-554 ------------------------------------------------------------
62
63 UNIPROT|Q7LCB3/1-530 ------------------------------------------------------------
64 UNIPROT|Q9VSE9/1-484 ------------------------------------------------------------
65 UNIPROT|Q9IBD5/1-710 HKSEPFRLSASSAPADSPFW----------------------------------------
66 UNIPROT|Q7LCB3/1-530 ------------------------------------------------------------
67 UNIPROT|Q9YGV9/1-848 SDFSPILYKSPGIQKNAEKYNVQYDATIKSEDGKTTSEREWGFQYRYNESCSTPSAPPRH
68 UNIPROT|Q90ZM7/1-438 ------------------------------------------------------------
69 UNIPROT|Q91445/1-344 ------------------------------------------------------------
70 UNIPROT|Q9VSE9/1-484 ------------------------------------------------------------
71 UNIPROT|Q90ZM8/1-554 ------------------------------------------------------------
72
73 UNIPROT|Q7LCB3/1-530 --------------------------------------------TGPGSKRDA-------
74 UNIPROT|Q9VSE9/1-484 -------------------------------------------GAGSGSVRDELR-----
75 UNIPROT|Q9IBD5/1-710 -------------------------------------------CQSTGPSEDHHLQIDYL
76 UNIPROT|Q7LCB3/1-530 --------------------------------------------TGPGSKRDA-------
77 UNIPROT|Q9YGV9/1-848 CAHQNRAGPYNQFFFNPFEYAKRGVVSREGYSLEHGFPNNLARTPYSGSLKNELGDRLSG
78 UNIPROT|Q90ZM7/1-438 ------------------------------------------------------------
79 UNIPROT|Q91445/1-344 ------------------------------------------------------------
80 UNIPROT|Q9VSE9/1-484 -------------------------------------------GAGSGSVRDELR-----
81 UNIPROT|Q90ZM8/1-554 -------------------------------------------HVSSGSLPSSTRPE---
82
83 UNIPROT|Q7LCB3/1-530 --------------------------HFCAVCSDYASGYHYGVWSCEGCKAFFKRSIQGH
84 UNIPROT|Q9VSE9/1-484 --------------------------RLCLVCGDVASGFHYGVASCEACKAFFKRTIQGN
85 UNIPROT|Q9IBD5/1-710 SPAGLHSTCKYSSTNAYSSYLGVLPQRVCVICGDEASGCHYGVLTCGSCKVFFKRAVEGH
86 UNIPROT|Q7LCB3/1-530 --------------------------HFCAVCSDYASGYHYGVWSCEGCKAFFKRSIQGH
87 UNIPROT|Q9YGV9/1-848 PYPDVSYRYEGERENVFPVEFFFPPQRTCLICGDEASGCHYGALTCGSCKVFFKRAAEGK
88 UNIPROT|Q90ZM7/1-438 -----------------------PPQKACLICSDEASGCHYGVLTCGSCKVFFKRAVEGQ
89 UNIPROT|Q91445/1-344 ----------------------------------EASGCHYGALTCGSCKVFFKRAAEGK
90 UNIPROT|Q9VSE9/1-484 --------------------------RLCLVCGDVASGFHYGVASCEACKAFFKRTIQGN
91 UNIPROT|Q90ZM8/1-554 -----------------------RSTQFCAVCSDYASGYHYGVWSCEGCKAFFKRSTQGH
92
93 UNIPROT|Q7LCB3/1-530 NDYICPATNQCTIDKNRRKSCQACRLRKCYEVGMVKCGSRRER-CGYRLVRRQRSADEQL
94 UNIPROT|Q9VSE9/1-484 IEYTCPANNECEINKRRRKACQACRFQKCLLMGMLKEGVRLDRVRGGRQKYRRNPVSNSY
95 UNIPROT|Q9IBD5/1-710 HNYLCAGRNDCIVDKIRRKNCPACRLRKCYQAGMI---------LGGRKLKKLGALKAAG
96 UNIPROT|Q7LCB3/1-530 NDYICPATNQCTIDKNRRKSCQACRLRKCYEVGMVKCGSRRER-CGYRLVRRQRSADEQL
97 UNIPROT|Q9YGV9/1-848 QKYLCASINDCTIDKLRRKNCPSCRLKRCFAAGMT---------LGARKLKKIGQMRAPE
98 UNIPROT|Q90ZM7/1-438 HNYLCAGRNDCIIDKIRRKNCPACRLRKCIQAGMT---------LGARKLKKQGRVKGEN
99 UNIPROT|Q91445/1-344 QKYLCASRNDCTIDKFRRKNCPSCRLRKCYEAGMT---------LGARKLKKLGNLKAQD
100 UNIPROT|Q9VSE9/1-484 IEYTCPANNECEINKRRRKACQACRFQKCLLMGMLKEGVRLDRVRGGRQKYRRNPVSNSY
101 UNIPROT|Q90ZM8/1-554 NDYMCPATNQCTIDRNRRKSCQACRLRKCYEVGMVK-GVRKDR-KGFRGVKHKRKRPIPQ
102
103 UNIPROT|Q7LCB3/1-530 HCAGKAKRSGGH------------------------APRVRELLLDALSPE--------Q
104 UNIPROT|Q9VSE9/1-484 QTMQLLYQSNTTSLCDVKILEVLNSYEPDALSVQTPPPQVHTTSITNDEASSSSGSI--K
105 UNIPROT|Q9IBD5/1-710 LTQALVAHSLTPRR---------LSGDSQALMPLGCLPGVRELHLS-------------P
106 UNIPROT|Q7LCB3/1-530 HCAGKAKRSGGH------------------------APRVRELLLDALSPE--------Q
107 UNIPROT|Q9YGV9/1-848 DGQGQGPAEAELSV----------------------SPKYDLGFHTQ------------S
108 UNIPROT|Q90ZM7/1-438 QRSPASSTATTSSA--------------------TPQPSSNSTAVTTFSPPPTGEPIFSP
109 UNIPROT|Q91445/1-344 DIEGASSSSPTEEQ----------------------APKLVMTRIDGYECQ--------P
110 UNIPROT|Q9VSE9/1-484 QTMQLLYQSNTTSLCDVKILEVLNSYEPDALSVQTPPPQVHTTSITNDEASSSSGSI--K
111 UNIPROT|Q90ZM8/1-554 KNGGEGGAGGGQDV-----------SETRPQGERPSGPRDRESAVSSLEAD--------Q
112
113 UNIPROT|Q7LCB3/1-530 LVLTLLEA-EPPHVLISR-PSAPFTEASMMMSLTKLADKELVHMISWAKKIPGFVELSLF
114 UNIPROT|Q9VSE9/1-484 LESSVVTP-NGTCIFQNNNNNDP---NEILSVLSDIYDKELVSVIGWAKQIPGFIDLPLN
115 UNIPROT|Q9IBD5/1-710 QIISVLESIEPEVVYSGYDNSQPDMPNMLLNSLNRLCERQLLRIVKWSKSLPGFRSLHIN
116 UNIPROT|Q7LCB3/1-530 LVLTLLEA-EPPHVLISR-PSAPFTEASMMMSLTKLADKELVHMISWAKKIPGFVELSLF
117 UNIPROT|Q9YGV9/1-848 MFLNILEAIEPEVVNAGHDYGQPDSAASLLTSLNELGERQLVKVVKWAKGMPGFRSLYVD
118 UNIPROT|Q90ZM7/1-438 TLIAILQAIEPEVVMSGYDNTRSQTTAYMLSSLNRLCDKQLVSIVKWAKSLPGFRNLHID
119 UNIPROT|Q91445/1-344 IFLNVLEAIEPGVVCAGHDNSQPDSFSNLLTSLNELGERQLVYVVKWAKALPGFRNLHVD
120 UNIPROT|Q9VSE9/1-484 LESSVVTP-NGTCIFQNNNNNDP---NEILSVLSDIYDKELVSVIGWAKQIPGFIDLPLN
121 UNIPROT|Q90ZM8/1-554 VISALLEA-EPPTVLSSYDPDKPVTEASLMAALTSLADRELVHMITWAKKIPGFTAIGLS
122
123 UNIPROT|Q7LCB3/1-530 DQVRLLESCWMEVLMMGLMWRSIDH--PGKLIFAPDLVLDRDEGKCVEGILEIFDMLLA-
124 UNIPROT|Q9VSE9/1-484 DQMKLLQVSWAEILTLQLTFRSLPF--NGKLCFATDVWMDEHLAKEC-GYTEFYYHCVQ-
125 UNIPROT|Q9IBD5/1-710 DQMALIQYSWMSLMVFSLGWRSFQNVTSDYLYFAPDLILNEEYMRRS----PIFDLCMAM
126 UNIPROT|Q7LCB3/1-530 DQVRLLESCWMEVLMMGLMWRSIDH--PGKLIFAPDLVLDRDEGKCVEGILEIFDMLLA-
127 UNIPROT|Q9YGV9/1-848 DQMTVIQHSWMAVMVFALGWRSFKNVKSRMLYFAPDLVFNEHRMQVS----TMYEHCIRM
128 UNIPROT|Q90ZM7/1-438 DQMVLIQYSWMGLMSFAMSWRSFQHTNSKLLYFAPDLVFDETRMQQS----AMYQLCVEM
129 UNIPROT|Q91445/1-344 DQMSIIQYSWMGLMVFAMGWRSFTNVNSRMLYFAPDLVFNEYRMHKS----RMYSQCIRM
130 UNIPROT|Q9VSE9/1-484 DQMKLLQVSWAEILTLQLTFRSLPF--NGKLCFATDVWMDEHLAKEC-GYTEFYYHCVQ-
131 UNIPROT|Q90ZM8/1-554 DQVQLLECCWLEILIVGLIWRSIDR--PGQLHFAPNLILGREDARNVEGMLDMFDMLLV-
132
133 UNIPROT|Q7LCB3/1-530 --TTSRFRELKLQHKEYLCVKAMILLNSSMYPLVTATQDADSSRKL-AHLLNAVTDALVW
134 UNIPROT|Q9VSE9/1-484 --IAQRMERISPRREEYYLLKALLLANC------DILLDDQSSLRAFRDTILNSLNDVVY
135 UNIPROT|Q9IBD5/1-710 QFIPQEFANLQVTKEEFLCMKVLLLLN-------TVPLEGLKSQPQFDEMRQNYIHELTK
136 UNIPROT|Q7LCB3/1-530 --TTSRFRELKLQHKEYLCVKAMILLNSSMYPLVTATQDADSSRKL-AHLLNAVTDALVW
137 UNIPROT|Q9YGV9/1-848 KNFSQEFAMLQVSQEEFLCMKALLLFS-------TIPVEGLKGQNFFDELRRSYINELDR
138 UNIPROT|Q90ZM7/1-438 RQVSEDFMKLQVTSEEFLCMKAILLLS-------TVPQEGLKSQGCFEEMRISYIRELNR
139 UNIPROT|Q91445/1-344 RHLSQEFGWLQITPQGFLCMKALLFFS-------IIPVDGLKNQKLFDELRMNYIKELDR
140 UNIPROT|Q9VSE9/1-484 --IAQRMERISPRREEYYLLKALLLANC------DILLDDQSSLRAFRDTILNSLNDVVY
141 UNIPROT|Q90ZM8/1-554 --TVSRFRELHLRREEYVCLKAMILLNSGVFFCLSNSAGEQTNVQLIQQILEKVMDALGS
142
143 UNIPROT|Q7LCB3/1-530 VIAKSGISSQQQSMRLANLLMLLSHVRHASNKGMEHLLNMKCKNV-----VPVYDLLLEM
144 UNIPROT|Q9VSE9/1-484 LLRHSSAVSHQQ-----QLLLLLPSLRQADDILRRFWRGIARDEV-----ITMKKLFLEM
145 UNIPROT|Q9IBD5/1-710 AIHLRENGVVACSQRFYHLTKLMDHMHDIVKKLHLYCLSTFIQADAMR--VEFPEMMSEV
146 UNIPROT|Q7LCB3/1-530 VIAKSGISSQQQSMRLANLLMLLSHVRHASNKGMEHLLNMKCKNV-----VPVYDLLLEM
147 UNIPROT|Q9YGV9/1-848 LVSFRSK--SSCSERFQQLTRLLDSLQPVLKKLHQFTFDLFVQSQNLSNQVCFPEMISEI
148 UNIPROT|Q90ZM7/1-438 TIARTEKNAVQCWQRFYQLTKLLXCMQDLVSKLLEFCFATFTQTQVWS--VEFPDMMAEI
149 UNIPROT|Q91445/1-344 IIACKRKNPTSCSRRFYQLTKVLDSVTPIAKDLHQFTFDLLIKAHMVS--VDYPEMMAEI
150 UNIPROT|Q9VSE9/1-484 LLRHSSAVSHQQ-----QLLLLLPSLRQADDILRRFWRGIARDEV-----ITMKKLFLEM
151 UNIPROT|Q90ZM8/1-554 TIGHIEASPPQHSRRLSQLLLLLSQIRHISNKGIEHLNSMKRKNV-----IPLYDLLLEL
152
153 UNIPROT|Q7LCB3/1-530 LNAHVLRGCKSSITGSECSPAEDSKSKEGSQNPQSQ---
154 UNIPROT|Q9VSE9/1-484 LE------------------------------PLAR---
155 UNIPROT|Q9IBD5/1-710 IASQL------------------PRVLAGMVKPLLFHTK
156 UNIPROT|Q7LCB3/1-530 LNAHVLRGCKSSITGSECSPAEDSKSKEGSQNPQSQ---
157 UNIPROT|Q9YGV9/1-848 ISVHV------------------PKILAGTVKPILFHK-
158 UNIPROT|Q90ZM7/1-438 ISAQL------------------ASHHGREARALHFHKK
159 UNIPROT|Q91445/1-344 ISVQV------------------PKILS-----------
160 UNIPROT|Q9VSE9/1-484 LE------------------------------PLAR---
161 UNIPROT|Q90ZM8/1-554 LDAHSLQN-----TGLRTSPP--PQDFRATLVP------
162