examples/estrogenReceptorProtein_aln.fa

   1 >UNIPROT|Q7LCB3/1-530 estrogen nuclear receptor beta variant a
   2 ------------------------------------------------------------------------
   3 ------------------------------------------------------------------------
   4 --------------------------MDIKNSPSSLNSPSSYNCSQSI------LPLEHGSIYIPSSYVDSH
   5 HEYPAMTFYSPAVMNYSIPSNVTNLEGGPGRQT-------TSP----------NVLWPTPGHLSPLVVHRQL
   6 SHLY--------------------------------------------AEPQKSPWCEARSLEHTLPVNRET
   7 LK----------RKVSGN---------------RCASPVTGP------------------------------
   8 -------------------GSKRDAHF---------------------------------CAVCSDYASGYH
   9 YGVWSCEGCKAFFKRSIQGHNDYICPATNQCTIDKNRRKSCQACRLRKCYEVGMVKCGSRRERC-GYRLVRR
  10 QRSADEQLHCAGKAKRSGGH-------------APRVRELLLDALSPEQLVLTLLEA-EPPHVLIS------
  11 ----------------------R-PSAPFTEASMMMSLTKLADKELVHMISWAKKIPGFVELSLFDQVRLLE
  12 SCWMEVLMMGLMWRSID--HPGKLIFAPDLVLDRDEGKCVEGILEIFDMLLAT---TSRFRELKLQHKEYLC
  13 VKAMILLNSSMYPLVTAT-QDADSSRKLAHLLNAVTDALVWVIAKSGISSQQQSMRLANLLMLLSHVRHASN
  14 KGMEHLLN--MKCKNV---VPVYDLLLEMLNAHVLRGCKSSITGSECSPAEDSKSKEGSQNPQSQ---
  15 >UNIPROT|Q9VSE9/1-484 GH28308p
  16 ------------------------------------------------------------------------
  17 ------------------------------------------------------------------------
  18 -----------------------------------------------------------MSDGVSILHIKQE
  19 VDTPSASCFSPSSKSTATQSGTNGLK--------------SSP----------SVSPERQLCSSTTSLSCDL
  20 HNVS---------------------------------------LSNDGDSLKGSGTSGGNGGGGGGGTSGGN
  21 AT--------------------------------NASAGAGS------------------------------
  22 -------------------GSVRDELRRL-------------------------------CLVCGDVASGFH
  23 YGVASCEACKAFFKRTIQGNIEYTCPANNECEINKRRRKACQACRFQKCLLMGMLKEGVRLDRVRGGRQKYR
  24 RNPVSNSYQTMQLLYQSNTTSL-----------CDVKILEVLNSYEPDALSVQT----PPPQVHTTSITNDE
  25 ASSSSGSIKLESSVVTPNGTCIFQNNNNNDPNEILSVLSDIYDKELVSVIGWAKQIPGFIDLPLNDQMKLLQ
  26 VSWAEILTLQLTFRSLP--FNGKLCFATDVWMDEHLAKEC-GYTEFYYHCVQI---AQRMERISPRREEYYL
  27 LKALLLANCDILL------DDQSSLRAFRDTILNSLNDVVYLLRHSSAVSHQQ-----QLLLLLPSLRQADD
  28 ILRRFWRG--IARDEV---ITMKKLFLEMLE------------------------------PLAR---
  29 >UNIPROT|Q9IBD5/1-710 progesterone receptor
  30 --------------------------------------------MDNNHQDKMESLYTPARASPTPDAESIK
  31 RARNLIKTYSESFGSYVEEIVRDDSNNIQSLSSVPLLMRNFGNMDTLTCAPGSGSDSEIWKDFVVPGNSVVS
  32 KDTCGHVEISTKAENLSWAAAPLSREETLAKGTVTVPATVPKESFTAT-----SNTSSASGISIKDEQQSLL
  33 KMEPQSSDFCPYTANIPKLNPSYLTNTASTKQLGYG----EQP----------DTSAHSSPPAQKIVLDTAR
  34 YSAD----------------------------------LCSDNPLPQATNIKTDPCSSFSSFVGEGILTRAS
  35 MGYSQQAIQTLPVHKSEP---------------FRLSASSAPADSPFWCQS---------------------
  36 ------------------TGPSEDHHLQIDYLSPAGLHSTCKYSSTNAYSSYLGVLPQRVCVICGDEASGCH
  37 YGVLTCGSCKVFFKRAVEGHHNYLCAGRNDCIVDKIRRKNCPACRLRKCYQAGMILGGRKLKKL-GALKAAG
  38 LTQALVAHSLTPRRLSGDSQAL-----------MPLGCLPGVRELHLSPQIISVLESIEPEVVYSG------
  39 ----------------------YDNSQPDMPNMLLNSLNRLCERQLLRIVKWSKSLPGFRSLHINDQMALIQ
  40 YSWMSLMVFSLGWRSFQNVTSDYLYFAPDLILNEEYMRRS----PIFDLCMAMQFIPQEFANLQVTKEEFLC
  41 MKVLLLLN--TVPL-----EGLKSQPQFDEMRQNYIHELTKAIHLRENGVVACSQRFYHLTKLMDHMHDIVK
  42 KLHLYCLSTFIQADAMR--VEFPEMMSEVIASQL------------------PRVLAGMVKPLLFHTK
  43 >UNIPROT|Q7LCB3/1-530 estrogen receptor 2 isoform A
  44 ------------------------------------------------------------------------
  45 ------------------------------------------------------------------------
  46 --------------------------MDIKNSPSSLNSPSSYNCSQSI------LPLEHGSIYIPSSYVDSH
  47 HEYPAMTFYSPAVMNYSIPSNVTNLEGGPGRQT-------TSP----------NVLWPTPGHLSPLVVHRQL
  48 SHLY--------------------------------------------AEPQKSPWCEARSLEHTLPVNRET
  49 LK----------RKVSGN---------------RCASPVTGP------------------------------
  50 -------------------GSKRDAHF---------------------------------CAVCSDYASGYH
  51 YGVWSCEGCKAFFKRSIQGHNDYICPATNQCTIDKNRRKSCQACRLRKCYEVGMVKCGSRRERC-GYRLVRR
  52 QRSADEQLHCAGKAKRSGGH-------------APRVRELLLDALSPEQLVLTLLEA-EPPHVLIS------
  53 ----------------------R-PSAPFTEASMMMSLTKLADKELVHMISWAKKIPGFVELSLFDQVRLLE
  54 SCWMEVLMMGLMWRSID--HPGKLIFAPDLVLDRDEGKCVEGILEIFDMLLAT---TSRFRELKLQHKEYLC
  55 VKAMILLNSSMYPLVTAT-QDADSSRKLAHLLNAVTDALVWVIAKSGISSQQQSMRLANLLMLLSHVRHASN
  56 KGMEHLLN--MKCKNV---VPVYDLLLEMLNAHVLRGCKSSITGSECSPAEDSKSKEGSQNPQSQ---
  57 >UNIPROT|Q9YGV9/1-848 androgen receptor alpha
  58 MEIPVGLGGVSDATNAVFRGPYQNVFHSLQVAFQSHGAVSRSLDFPNTKYGFLQNRHFCEMRQENKQPPCKG
  59 LGLFYGNHRNSDTGTNEDDIACFSRQSDAEARPGIFSESSLDTGDEITCKLQSDNQGVRASGPLLPGSSGCN
  60 SGQKSSLACTSQQRETTSQSDTCAGESCSEHQATTISETARELCNAVSVSLGLNLDLNDMNDLSSNQISSTE
  61 SDTSQAIYLFESSPGYTGVGLNALVRDCKCQSAREGTSTQQYDRGAMFKINRVNDLPLQPAPPRHTSISDAK
  62 WDMEAGLCAQMEHKDSEKCANMDGAHSTSVFSQFDQLLPVNASHYSQNVSVRVEPQSDFSPILYKSPGIQKN
  63 AEKYNVQYDATIKSEDGKTTSEREWGFQYRYNESCSTPSAPPRHCAHQNRAGPYNQFFFNPFEYAKRGVVSR
  64 EGYSLEHGFPNNLARTPYSGSLKNELGDRLSGPYPDVSYRYEGERENVFPVEFFFPPQRTCLICGDEASGCH
  65 YGALTCGSCKVFFKRAAEGKQKYLCASINDCTIDKLRRKNCPSCRLKRCFAAGMTL---------GARKLKK
  66 IGQMRAPEDGQGQGPAEAELSV-----------SPKYDL----GFHTQSMFLNILEAIEPEVVNAG------
  67 ----------------------HDYGQPDSAASLLTSLNELGERQLVKVVKWAKGMPGFRSLYVDDQMTVIQ
  68 HSWMAVMVFALGWRSFKNVKSRMLYFAPDLVFNEHRMQVS----TMYEHCIRMKNFSQEFAMLQVSQEEFLC
  69 MKALLLFS--TIPV-----EGLKGQNFFDELRRSYINELDRLVSFRSKSS--CSERFQQLTRLLDSLQPVLK
  70 KLHQFTFDLFVQSQNLSNQVCFPEMISEIISVHV------------------PKILAGTVKPILFHK-
  71 >UNIPROT|Q91445/1-344 androgen receptor
  72 ------------------------------------------------------------------------
  73 ------------------------------------------------------------------------
  74 ------------------------------------------------------------------------
  75 ------------------------------------------------------------------------
  76 ------------------------------------------------------------------------
  77 ------------------------------------------------------------------------
  78 ------------------------------------------------------------------EASGCH
  79 YGALTCGSCKVFFKRAAEGKQKYLCASRNDCTIDKFRRKNCPSCRLRKCYEAGMTL---------GARKLKK
  80 LGNLKAQDDIEGASSSSPTEEQ-----------APKLVMTRIDGYECQPIFLNVLEAIEPGVVCAG------
  81 ----------------------HDNSQPDSFSNLLTSLNELGERQLVYVVKWAKALPGFRNLHVDDQMSIIQ
  82 YSWMGLMVFAMGWRSFTNVNSRMLYFAPDLVFNEYRMHKS----RMYSQCIRMRHLSQEFGWLQITPQGFLC
  83 MKALLFFS--IIPV-----DGLKNQKLFDELRMNYIKELDRIIACKRKNPTSCSRRFYQLTKVLDSVTPIAK
  84 DLHQFTFDLLIKAHMVS--VDYPEMMAEIISVQV------------------PKILS-----------
  85 >UNIPROT|Q9VSE9/1-484 estrogen-related receptor
  86 ------------------------------------------------------------------------
  87 ------------------------------------------------------------------------
  88 -----------------------------------------------------------MSDGVSILHIKQE
  89 VDTPSASCFSPSSKSTATQSGTNGLK--------------SSP----------SVSPERQLCSSTTSLSCDL
  90 HNVS---------------------------------------LSNDGDSLKGSGTSGGNGGGGGGGTSGGN
  91 AT--------------------------------NASAGAGS------------------------------
  92 -------------------GSVRDELRRL-------------------------------CLVCGDVASGFH
  93 YGVASCEACKAFFKRTIQGNIEYTCPANNECEINKRRRKACQACRFQKCLLMGMLKEGVRLDRVRGGRQKYR
  94 RNPVSNSYQTMQLLYQSNTTSL-----------CDVKILEVLNSYEPDALSVQT----PPPQVHTTSITNDE
  95 ASSSSGSIKLESSVVTPNGTCIFQNNNNNDPNEILSVLSDIYDKELVSVIGWAKQIPGFIDLPLNDQMKLLQ
  96 VSWAEILTLQLTFRSLP--FNGKLCFATDVWMDEHLAKEC-GYTEFYYHCVQI---AQRMERISPRREEYYL
  97 LKALLLANCDILL------DDQSSLRAFRDTILNSLNDVVYLLRHSSAVSHQQ-----QLLLLLPSLRQADD
  98 ILRRFWRG--IARDEV---ITMKKLFLEMLE------------------------------PLAR---
  99 >UNIPROT|Q90ZM8/1-554 estrogen receptor
 100 ------------------------------------------------------------------------
 101 ------------------------------------------------------------------------
 102 -------------------ARGFSEAHGYEYSGASLYQPLPPSCTEFS-----------IGAHQQQQHQHQH
 103 HQHQHQQHHHQQQQQQPQPQQNGVLGEGQSSHLSYLPPSTELP----------QYVPSSPSAPYSMELGAGR
 104 PHGYD---------------------------------PGPQSLYRGGVESSAPPYSEQQQVVGGGGAMSAM
 105 GL-------------TEP---------------RHVSSGSLP------------------------------
 106 -------------------SSTRPERSTQF------------------------------CAVCSDYASGYH
 107 YGVWSCEGCKAFFKRSTQGHNDYMCPATNQCTIDRNRRKSCQACRLRKCYEVGMVK-GVRKDRK-GFRGVKH
 108 KRKRPIPQKNGGEGGAGGGQDVSETRPQGERPSGPRDRESAVSSLEADQVISALLEA-EPPTVLSS------
 109 ----------------------YDPDKPVTEASLMAALTSLADRELVHMITWAKKIPGFTAIGLSDQVQLLE
 110 CCWLEILIVGLIWRSID--RPGQLHFAPNLILGREDARNVEGMLDMFDMLLVT---VSRFRELHLRREEYVC
 111 LKAMILLNSGVFFCLSNSAGEQTNVQLIQQILEKVMDALGSTIGHIEASPPQHSRRLSQLLLLLSQIRHISN
 112 KGIEHLNS--MKRKNV---IPLYDLLLELLDAHSLQ-------NTGLRTSPPPQDFRATLVP------