2 * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3 * Copyright (C) $$Year-Rel$$ The Jalview Authors
5 * This file is part of Jalview.
7 * Jalview is free software: you can redistribute it and/or
8 * modify it under the terms of the GNU General Public License
9 * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
11 * Jalview is distributed in the hope that it will be useful, but
12 * WITHOUT ANY WARRANTY; without even the implied warranty
13 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
14 * PURPOSE. See the GNU General Public License for more details.
16 * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
17 * The Jalview Authors are detailed in the 'AUTHORS' file.
21 <div id="view_decorated" name="view_decorated" style="margin:8px; padding:10px; border: 2px solid red; text-align:center; display:none;"><b>Click <a href="index.html#formComplete"> here</a> to view decorated page</b></div>
24 <!-- boiler plate link to alternate demopage -->
25 <div style="width: 100%">
26 <div style="width:35%; align:left; float:right;">
31 <!-- content template start -->
32 <h2><a href="javascript:doSubmit('jalviewLiteJs')">JalviewLite API</a> Demo</h2>
33 <p>Using the Javascript API to fill out forms using data from JalviewLite
34 <br/>Click the Javascript buttons below to interact with the Applet
35 instance on the page.</p>
36 <a href="view-source:http://www.jalview.org/builds/develop/examples/formComplete.html" target="_blank">View the source here to see how it has been done</a> (If the link doesn't work on your browser try going to <a href="http://www.jalview.org/builds/develop/examples/formComplete.html">this page</a> and viewing the page source manually).<br/>
37 <a name="api">View the full <a href="javascript:doSubmit('jalviewLiteJs')">JalviewLite API documentation</a>.</a>
38 <applet code="jalview.bin.JalviewLite" width="0" height="0"
39 archive="jalviewApplet.jar,JmolApplet-14.6.4_2016.10.26.jar,java-json.jar,json_simple-1.1.jar" name="Jalview">
41 <param name="file" value="plantfdx.fa"/>
42 <param name="features" value="plantfdx.features"/>
43 <param name="wrap" value="true"/>
44 <param name="showAnnotation" value="false"/>
45 <param name="windowHeight" value="500"/>
46 <param name="windowWidth" value="650"/>
47 <param name="showFullId" value="false"/>
48 <param name="linkLabel_1" value="Uniprot"/>
49 <param name="linkUrl_1"
50 value="http://www.uniprot.org/uniprot/$SEQUENCE_ID$"/>
51 <param name="linkLabel_2" value="Expasy">
52 <param name="linkUrl_2"
53 value="http://us.expasy.org/cgi-bin/niceprot.pl?$SEQUENCE_ID$"/>
54 <param name="hidefeaturegroups" value="uniprot" />
55 <param name="showbutton" value="false" />
57 <form name="exampleForm"><br/>
59 <center><strong>Using the Jalview Applet for Input
60 to an HTML Form</strong></center>
61 <div align="center"><input type="button"
62 onClick="document.forms.exampleForm.exampleTextarea.value=document.applets.Jalview.getAlignment('fasta', 'false')"
63 value="Fill Form from Jalview" /> <br/>
65 <textarea name="exampleTextarea" cols="55" rows="9"></textarea></div>
67 <center><strong>Make a new View and Get and Set
68 Group Display List</strong></center>
69 <form name="groupForm">
70 <div align="center"><input type="button"
71 onClick="document.forms.groupForm.groups.value=document.applets.Jalview.getFeatureGroups()"
72 value="Get groups" /> <input type="button"
73 onClick="document.applets.Jalview.newView()" value="new View" /> <br/>
74 <textarea name="groups" cols="55" rows="9"></textarea> <br/>
76 onClick="document.applets.Jalview.setFeatureGroupState(document.forms.groupForm.groups.value, true)"
77 value="Display groups" /> <input type="button"
78 onClick="document.applets.Jalview.setFeatureGroupState(document.forms.groupForm.groups.value, false)"
79 value="Hide groups" /></div>
82 <!-- content template end -->