examples/formComplete.html

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   3  * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8)
   4  * Copyright (C) 2012 J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle
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  19 <html xmlns="http://www.w3.org/1999/xhtml">
  20 <head>
  21 <TITLE>JalviewLite Applet API and Form Complete Example</TITLE>
  22 <meta http-equiv="Content-Type" content="text/html; charset=UTF-8" />
  23
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  34
  35 <!-- dd menu -->
  36 <script type="text/javascript">
  37 <!--
  38 var timeout         = 500;
  39 var closetimer  = 0;
  40 var ddmenuitem      = 0;
  41
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  52  ddmenuitem = document.getElementById(id);
  53  ddmenuitem.style.visibility = 'visible';
  54
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  57 function mclose()
  58 {
  59  if(ddmenuitem) ddmenuitem.style.visibility = 'hidden';
  60 }
  61
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  72  {
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  75  }
  76 }
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  86 </script>
  87 </head>
  88
  89
  90 <body>
  91
  92
  93 <div id="header">
  94 <div id="logo"><a href="http://www.jalview.org" title="Home"></a></div>
  95 <ul id="buttons">
  96 <li id="applet"><a href="applets.html" title="applet"></a></li>
  97 <li id="desktop"><a href="../webstart/jalview.jnlp" title="desktop"></a></li>
  98 </ul>
  99 </div>
 100
 101
 102 <div id ="nav">
 103 <div id="navInner">
 104
 105 <ul id="sddm">
 106  <li><a href="http://www.jalview.org">Home</a></li>
 107  <li><a href="http://www.jalview.org/about" onmouseover="mopen('m1')" onmouseout="mclosetime()">About</a>
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 110   <a href="http://www.jalview.org/about/citation">Publications</a>
 111   <a href="http://www.jalview.org/about/credits">Credits</a>
 112   </div>
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 143
 144
 145 <div id="pageWrap">
 146
 147 <div id="sideNav">
 148 <ul>
 149 <li><a href="applets.html">JalviewLite Examples</a></li>
 150 <li><a href="appletParameters.html">Applet Parameters</a></li>
 151 <li><a href="jalviewLiteJs.html">Javascript API</a></li>
 152 <li  class="jvlite-nav-small"><a href="formComplete.html">in-page API demo</a></li>
 153 <li><a href="linkedapplets_ng.html">Two JalviewLites demo</a></li>
 154 <li><a href="embeddedWJmol.html">Jalview and Jmol demo</a></li>
 155 </ul>
 156 </div>
 157
 158 <div id="content" class="content">
 159                 <strong>Using the <a href="jalviewLiteJs.html">JalviewLite API</a> to fill out forms using data from JalviewLite<br></strong>
 160                 Click the Javascript buttons below to interact with the Applet
 161                 instance on the page.<br>
 162                 View the source in your browser to see how it has been done. <br>
 163                 <a name="api">View the full <a href="jalviewLiteJs.html">JalviewLite API documentation</a>.</a>
 164                 <applet code="jalview.bin.JalviewLite" width="0" height="0"
 165                         archive="jalviewApplet.jar" name="Jalview">
 166                         <param name="file" value="plantfdx.fa">
 167                         <param name="features" value="plantfdx.features">
 168                         <param name="wrap" value="true">
 169                         <param name="showAnnotation" value="false">
 170                         <param name="windowHeight" value="500">
 171                         <param name="windowWidth" value="650">
 172                         <param name="showFullId" value="false">
 173                                <param name="linkLabel_1" value="Uniprot">
 174         <param name="linkUrl_1"
 175          value="http://www.uniprot.org/uniprot/$SEQUENCE_ID$">
 176          <param name="linkLabel_2" value="Expasy">
 177           <param name="linkUrl_2"
 178            value="http://us.expasy.org/cgi-bin/niceprot.pl?$SEQUENCE_ID$">
 179 <param name="hidefeaturegroups" value="uniprot" />
 180                         <param name="showbutton" value="false" />
 181                 </applet>
 182                 <form name="exampleForm"><br>
 183                 <br>
 184                 <center><strong>Using the Jalview Applet for Input
 185                 to an HTML Form</strong></center>
 186                 <div align="center"><input type="button"
 187                         onClick="document.forms.exampleForm.exampleTextarea.value=document.applets.Jalview.getAlignment('fasta', 'false')"
 188                         value="Fill Form from Jalview" /> <br>
 189                 <br>
 190                 <textarea name="exampleTextarea" cols="55" rows="9"></textarea></div>
 191                 </form>
 192                 <center><strong>Make a new View and Get and Set
 193                 Group Display List</strong></center>
 194                 <form name="groupForm">
 195                 <div align="center"><input type="button"
 196                         onClick="document.forms.groupForm.groups.value=document.applets.Jalview.getFeatureGroups()"
 197                         value="Get groups" /> <input type="button"
 198                         onClick="document.applets.Jalview.newView()" value="new View" /> <br>
 199                 <textarea name="groups" cols="55" rows="9"></textarea> <br>
 200                 <input type="button"
 201                         onClick="document.applets.Jalview.setFeatureGroupState(document.forms.groupForm.groups.value, true)"
 202                         value="Display groups" /> <input type="button"
 203                         onClick="document.applets.Jalview.setFeatureGroupState(document.forms.groupForm.groups.value, false)"
 204                         value="Hide groups" /></div>
 205                 </form>
 206                 </div>
 207 </div>
 208 <div id ="footer">
 209 <div id="innerFooter">
 210 <div id="copyright"><p>Published under <a href="http://creativecommons.org/licenses/by-sa/3.0/">CC-SA 3.0</a></p></div>
 211 <div id="cite">
 212 <p>
 213 If you use Jalview in your work, please cite this publication:
 214 </p>
 215 <br />
 216 <p>
 217 Waterhouse, A.M., Procter, J.B., Martin, D.M.A, Clamp, M. and Barton, G. J. (2009)
 218 "Jalview Version 2 - a multiple sequence alignment editor and analysis workbench"
 219 Bioinformatics 25 (9) 1189-1191 <a href="http://dx.doi.org/10.1093/bioinformatics/btp033">doi: 10.1093/bioinformatics/btp033</a>
 220 </p>
 221 </div>
 222 </div>
 223 </div>
 224 </body>
 225 </html>
 226