Merge branch 'patch/JAL-2754_patch2104forJava8' into releases/Release_2_10_4_Branch
[jalview.git] / examples / includes / header_jv.html
1 <!--
2  * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3  * Copyright (C) $$Year-Rel$$ The Jalview Authors
4  * 
5  * This file is part of Jalview.
6  * 
7  * Jalview is free software: you can redistribute it and/or
8  * modify it under the terms of the GNU General Public License 
9  * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
10  *  
11  * Jalview is distributed in the hope that it will be useful, but 
12  * WITHOUT ANY WARRANTY; without even the implied warranty 
13  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
14  * PURPOSE.  See the GNU General Public License for more details.
15  * 
16  * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
17  * The Jalview Authors are detailed in the 'AUTHORS' file.
18 -->
19
20
21 <body
22         class="html not-front not-logged-in page-node page-node- page-node-18 node-type-basic-page context-about">
23         <div id="skip-link">
24                 <a href="#main-content" class="element-invisible element-focusable">Skip
25                         to main content</a>
26         </div>
27         <div class="page clearfix" id="page">
28                 <header id="section-header" class="section section-header">
29                 <div id="zone-branding-wrapper"
30                         class="zone-wrapper zone-branding-wrapper clearfix">
31                         <div id="zone-branding"
32                                 class="zone zone-branding clearfix container-12">
33                                 <div class="grid-6 region region-branding" id="region-branding">
34                                         <div class="region-inner region-branding-inner">
35                                                 <div
36                                                         class="block block-views block-main-logo-block block-views-main-logo-block odd block-without-title"
37                                                         id="block-views-main-logo-block">
38                                                         <div class="block-inner clearfix">
39                                                                 <div class="content clearfix">
40                                                                         <div
41                                                                                 class="view view-main-logo view-id-main_logo view-display-id-block view-dom-id-1828f18ab2b5b41781dad3bdfec6156b">
42                                                                                 <div class="view-content">
43                                                                                         <div class="item-list">
44                                                                                                 <ul>
45                                                                                                         <li
46                                                                                                                 class="views-row views-row-1 views-row-odd views-row-first views-row-last">
47                                                                                                                 <div class="views-field views-field-field-logo-image">
48                                                                                                                         <div class="field-content">
49                                                                                                                                 <a href="http://www.jalview.org/"><img
50                                                                                                                                         class="adaptive-image" typeof="foaf:Image"
51                                                                                                                                         src="http://www.jalview.org/sites/jalview.aegir-prod-6.lifesci.dundee.ac.uk/files/styles/adaptive/adaptive-image/public/jalviewHome_0.jpg?itok=xoZsVtTd"
52                                                                                                                                         alt="" /></a>
53                                                                                                                         </div>
54                                                                                                                 </div>
55                                                                                                         </li>
56                                                                                                 </ul>
57                                                                                         </div>
58                                                                                 </div>
59                                                                         </div>
60                                                                 </div>
61                                                         </div>
62                                                 </div>
63                                         </div>
64                                 </div>
65                                 <div class="grid-6 region region-launch-buttons"
66                                         id="region-launch-buttons">
67                                         <div class="region-inner region-launch-buttons-inner">
68                                                 <div
69                                                         class="block block-views block-launch-buttons-block block-views-launch-buttons-block odd block-without-title"
70                                                         id="block-views-launch-buttons-block">
71                                                         <div class="block-inner clearfix">
72                                                                 <div class="content clearfix">
73                                                                         <div
74                                                                                 class="view view-launch-buttons view-id-launch_buttons view-display-id-block view-dom-id-be0b33b57f9a461aaaf77cdeab66e60c">
75                                                                                 <div class="view-content">
76                                                                                         <div class="item-list">
77                                                                                                 <ul>
78                                                                                                         <li
79                                                                                                                 class="views-row views-row-1 views-row-odd views-row-first">
80                                                                                                                 <div class="views-field views-field-field-button-image">
81                                                                                                                         <div class="field-content">
82                                                                                                                                 <a href="http://www.jalview.org/webstart/jalview.jnlp"><img
83                                                                                                                                         typeof="foaf:Image"
84                                                                                                                                         src="http://www.jalview.org/sites/jalview.aegir-prod-6.lifesci.dundee.ac.uk/files/desk.jpg"
85                                                                                                                                         width="250" height="40" alt="" /></a>
86                                                                                                                         </div>
87                                                                                                                 </div>
88                                                                                                         </li>
89                                                                                                         <li
90                                                                                                                 class="views-row views-row-2 views-row-even views-row-last">
91                                                                                                                 <div class="views-field views-field-field-button-image">
92                                                                                                                         <div class="field-content">
93                                                                                                                                 <a href="http://www.jalview.org/examples/applets.html"><img
94                                                                                                                                         typeof="foaf:Image"
95                                                                                                                                         src="http://www.jalview.org/sites/jalview.aegir-prod-6.lifesci.dundee.ac.uk/files/applet.jpg"
96                                                                                                                                         width="250" height="40" alt="" /></a>
97                                                                                                                         </div>
98                                                                                                                 </div>
99                                                                                                         </li>
100                                                                                                 </ul>
101                                                                                         </div>
102                                                                                 </div>
103                                                                         </div>
104                                                                 </div>
105                                                         </div>
106                                                 </div>
107                                         </div>
108                                 </div>
109                         </div>
110                 </div>
111                 <div id="zone-menu-wrapper"
112                         class="zone-wrapper zone-menu-wrapper clearfix">
113                         <div id="zone-menu" class="zone zone-menu clearfix container-12">
114                                 <div class="grid-12 region region-menu" id="region-menu">
115                                         <div class="region-inner region-menu-inner">
116                                                 <section
117                                                         class="block block-nice-menus block-1 block-nice-menus-1 odd"
118                                                         id="block-nice-menus-1">
119                                                 <div class="block-inner clearfix">
120                                                         <h2 class="block-title">
121                                                                 <span class="nice-menu-hide-title">Main menu</span>
122                                                         </h2>
123                                                         <div class="content clearfix">
124                                                                 <ul class="nice-menu nice-menu-down" id="nice-menu-1">
125                                                                         <li class="menu-346 menu-path-front  first   odd  "><a
126                                                                                 href="/" title="">Home</a></li>
127                                                                         <li
128                                                                                 class="menu-355 menuparent  menu-path-node-18 active-trail   even  "><a
129                                                                                 href="/About">About</a>
130                                                                                 <ul>
131                                                                                         <li class="menu-356 menu-path-node-19  first   odd  "><a
132                                                                                                 href="/about/citation">Publications</a></li>
133                                                                                         <li class="menu-357 menu-path-node-20   even  "><a
134                                                                                                 href="/about/credits">Credits</a></li>
135                                                                                         <li class="menu-494 menu-path-node-310   odd   last "><a
136                                                                                                 href="/about/jalview-scientific-advisory-committee">Advisory
137                                                                                                         Committee</a></li>
138                                                                                 </ul></li>
139                                                                         <li class="menu-437 menuparent  menu-path-node-340   odd  "><a
140                                                                                 href="/Help" class="help-colour-scheme">Help</a>
141                                                                                 <ul>
142                                                                                         <li class="menu-579 menu-path-node-576  first   odd  "><a
143                                                                                                 href="/Help/Getting-Started"
144                                                                                                 title="Getting Starting with jalview">Getting Started</a></li>
145                                                                                         <li class="menu-511 menu-path-faq   even  "><a
146                                                                                                 href="/faq">FAQ</a></li>
147                                                                                         <li class="menu-513 menu-path-node-2   odd  "><a
148                                                                                                 href="/about/documentation">Documentation</a></li>
149                                                                                         <li
150                                                                                                 class="menu-514 menu-path-jalvieworg-mailman-listinfo-jalview-discuss   even  "><a
151                                                                                                 href="http://www.jalview.org/mailman/listinfo/jalview-discuss"
152                                                                                                 class="new-window" target="_blank">Discussion Mailing
153                                                                                                         List</a></li>
154                                                                                         <li class="menu-773 menu-path-node-618   odd   last "><a
155                                                                                                 href="/Help/About-Jalview" title="About Jalview">Other
156                                                                                                         Resources</a></li>
157                                                                                 </ul></li>
158                                                                         <li class="menu-363 menuparent  menu-path-node-25   even  "><a
159                                                                                 href="/community" class="community">Community</a>
160                                                                                 <ul>
161                                                                                         <li
162                                                                                                 class="menu-364 menu-path-jalvieworg-mailman-listinfo-jalview-announce  first   odd  "><a
163                                                                                                 href="http://www.jalview.org/mailman/listinfo/jalview-announce"
164                                                                                                 class="new-window" target="_blank">News Mailing List</a></li>
165                                                                                         <li
166                                                                                                 class="menu-365 menu-path-jalvieworg-mailman-listinfo-jalview-discuss   even  "><a
167                                                                                                 href="http://www.jalview.org/mailman/listinfo/jalview-discuss"
168                                                                                                 class="new-window" target="_blank">Discussion Mailing
169                                                                                                         List</a></li>
170                                                                                         <li class="menu-441 menu-path-community-links   odd  "><a
171                                                                                                 href="/community/links">Links</a></li>
172                                                                                         <li
173                                                                                                 class="menu-457 menu-path-community-community-news   even   last "><a
174                                                                                                 href="/community/community-news">Community News</a></li>
175                                                                                 </ul></li>
176                                                                         <li class="menu-366 menuparent  menu-path-node-26   odd  "><a
177                                                                                 href="/development" class="development">Development</a>
178                                                                                 <ul>
179                                                                                         <li
180                                                                                                 class="menu-436 menu-path-issuesjalvieworg-secure-Dashboardjspa  first   odd  "><a
181                                                                                                 href="http://issues.jalview.org/secure/Dashboard.jspa"
182                                                                                                 name="new-window" class="new-window" target="_blank">Jalview
183                                                                                                         Bug Tracker</a></li>
184                                                                                         <li class="menu-367 menu-path-node-27   even  "><a
185                                                                                                 href="/development/development-builds">Development
186                                                                                                         Version</a></li>
187                                                                                         <li
188                                                                                                 class="menu-453 menu-path-sourcejalvieworg-gitweb-pjalviewgit;asummary   odd  "><a
189                                                                                                 href="http://source.jalview.org/gitweb/?p=jalview.git;a=summary"
190                                                                                                 class="new-window" target="_blank">Jalview Git Web</a></li>
191                                                                                         <li class="menu-512 menu-path-node-341   even  "><a
192                                                                                                 href="/development/Version-Archive">Version Archive</a></li>
193                                                                                         <li
194                                                                                                 class="menu-462 menu-path-development-release-history   odd  "><a
195                                                                                                 href="/development/release-history">Release History</a></li>
196                                                                                         <li
197                                                                                                 class="menu-456 menu-path-development-development-news   even   last "><a
198                                                                                                 href="/development/development-news">Development News</a></li>
199                                                                                 </ul></li>
200                                                                         <li class="menu-369 menuparent  menu-path-node-29   even  "><a
201                                                                                 href="/training" class="training">Training</a>
202                                                                                 <ul>
203                                                                                         <li
204                                                                                                 class="menu-440 menu-path-training-training-courses  first   odd  "><a
205                                                                                                 href="/training/training-courses">Training Courses</a></li>
206                                                                                         <li class="menu-1374 menu-path-node-654   even  "><a
207                                                                                                 href="/training/Training-Videos"
208                                                                                                 title="Jalview Online Training Videos">Training Videos</a></li>
209                                                                                         <li class="menu-458 menu-path-training-training-news   odd  "><a
210                                                                                                 href="/training/training-news">Training News</a></li>
211                                                                                         <li class="menu-610 menu-path-node-606   even   last "><a
212                                                                                                 href="/ISMB-2014-Presentation">Jalview &amp; JABA Slides</a></li>
213                                                                                 </ul></li>
214                                                                         <li class="menu-358 menu-path-node-21   odd   last "><a
215                                                                                 href="/Download" class="download-right">Download</a></li>
216                                                                 </ul>
217                                                         </div>
218                                                 </div>
219                                                 </section>
220                                         </div>
221                                 </div>
222                         </div>
223                 </div>
224                 <div id="zone-header-wrapper"
225                         class="zone-wrapper zone-header-wrapper clearfix">
226                         <div id="zone-header" class="zone zone-header clearfix container-12">
227                                 <div class="grid-12 region region-header-first"
228                                         id="region-header-first">
229                                         <div class="region-inner region-header-first-inner">
230                                                 <div
231                                                         class="block block-menu-block primary-nav block-3 block-menu-block-3 odd block-without-title"
232                                                         id="block-menu-block-3">
233                                                         <div class="block-inner clearfix">
234
235                                                                 <div class="content clearfix">
236                                                                         <div
237                                                                                 class="menu-block-wrapper menu-block-3 menu-name-main-menu parent-mlid-0 menu-level-1">
238                                                                                 <ul class="menu">
239                                                                                         <li class="first leaf menu-mlid-346"><a href="/"
240                                                                                                 title="">Home</a></li>
241                                                                                         <li class="expanded active-trail active menu-mlid-355"><a
242                                                                                                 href="/About" class="active-trail active">About</a>
243                                                                                                 <ul class="menu">
244                                                                                                         <li class="first leaf menu-mlid-356"><a
245                                                                                                                 href="/about/citation">Publications</a></li>
246                                                                                                         <li class="leaf menu-mlid-357"><a
247                                                                                                                 href="/about/credits">Credits</a></li>
248                                                                                                         <li class="last leaf menu-mlid-494"><a
249                                                                                                                 href="/about/jalview-scientific-advisory-committee">Advisory
250                                                                                                                         Committee</a></li>
251                                                                                                 </ul></li>
252                                                                                         <li class="expanded menu-mlid-437"><a href="/Help"
253                                                                                                 class="help-colour-scheme">Help</a>
254                                                                                                 <ul class="menu">
255                                                                                                         <li class="first leaf menu-mlid-579"><a
256                                                                                                                 href="/Help/Getting-Started"
257                                                                                                                 title="Getting Starting with jalview">Getting Started</a></li>
258                                                                                                         <li class="leaf menu-mlid-511"><a href="/faq">FAQ</a></li>
259                                                                                                         <li class="leaf menu-mlid-513"><a
260                                                                                                                 href="/about/documentation">Documentation</a></li>
261                                                                                                         <li class="leaf menu-mlid-514"><a
262                                                                                                                 href="http://www.jalview.org/mailman/listinfo/jalview-discuss"
263                                                                                                                 class="new-window" target="_blank">Discussion Mailing
264                                                                                                                         List</a></li>
265                                                                                                         <li class="last leaf menu-mlid-773"><a
266                                                                                                                 href="/Help/About-Jalview" title="About Jalview">Other
267                                                                                                                         Resources</a></li>
268                                                                                                 </ul></li>
269                                                                                         <li class="expanded menu-mlid-363"><a href="/community"
270                                                                                                 class="community">Community</a>
271                                                                                                 <ul class="menu">
272                                                                                                         <li class="first leaf menu-mlid-364"><a
273                                                                                                                 href="http://www.jalview.org/mailman/listinfo/jalview-announce"
274                                                                                                                 class="new-window" target="_blank">News Mailing List</a></li>
275                                                                                                         <li class="leaf menu-mlid-365"><a
276                                                                                                                 href="http://www.jalview.org/mailman/listinfo/jalview-discuss"
277                                                                                                                 class="new-window" target="_blank">Discussion Mailing
278                                                                                                                         List</a></li>
279                                                                                                         <li class="leaf menu-mlid-441"><a
280                                                                                                                 href="/community/links">Links</a></li>
281                                                                                                         <li class="last leaf menu-mlid-457"><a
282                                                                                                                 href="/community/community-news">Community News</a></li>
283                                                                                                 </ul></li>
284                                                                                         <li class="expanded menu-mlid-366"><a
285                                                                                                 href="/development" class="development">Development</a>
286                                                                                                 <ul class="menu">
287                                                                                                         <li class="first leaf menu-mlid-436"><a
288                                                                                                                 href="http://issues.jalview.org/secure/Dashboard.jspa"
289                                                                                                                 name="new-window" class="new-window" target="_blank">Jalview
290                                                                                                                         Bug Tracker</a></li>
291                                                                                                         <li class="leaf menu-mlid-367"><a
292                                                                                                                 href="/development/development-builds">Development
293                                                                                                                         Version</a></li>
294                                                                                                         <li class="leaf menu-mlid-453"><a
295                                                                                                                 href="http://source.jalview.org/gitweb/?p=jalview.git;a=summary"
296                                                                                                                 class="new-window" target="_blank">Jalview Git Web</a></li>
297                                                                                                         <li class="leaf menu-mlid-512"><a
298                                                                                                                 href="/development/Version-Archive">Version Archive</a></li>
299                                                                                                         <li class="leaf menu-mlid-462"><a
300                                                                                                                 href="/development/release-history">Release History</a></li>
301                                                                                                         <li class="last leaf menu-mlid-456"><a
302                                                                                                                 href="/development/development-news">Development News</a></li>
303                                                                                                 </ul></li>
304                                                                                         <li class="expanded menu-mlid-369"><a href="/training"
305                                                                                                 class="training">Training</a>
306                                                                                                 <ul class="menu">
307                                                                                                         <li class="first leaf menu-mlid-440"><a
308                                                                                                                 href="/training/training-courses">Training Courses</a></li>
309                                                                                                         <li class="leaf menu-mlid-1374"><a
310                                                                                                                 href="/training/Training-Videos"
311                                                                                                                 title="Jalview Online Training Videos">Training Videos</a></li>
312                                                                                                         <li class="leaf menu-mlid-458"><a
313                                                                                                                 href="/training/training-news">Training News</a></li>
314                                                                                                         <li class="last leaf menu-mlid-610"><a
315                                                                                                                 href="/ISMB-2014-Presentation">Jalview &amp; JABA
316                                                                                                                         Slides</a></li>
317                                                                                                 </ul></li>
318                                                                                         <li class="last expanded menu-mlid-358"><a
319                                                                                                 href="/Download" class="download-right">Download</a></li>
320                                                                                 </ul>
321                                                                         </div>
322                                                                 </div>
323                                                         </div>
324                                                 </div>
325                                         </div>
326                                 </div>
327                                 <div class="grid-6 region region-header-second"
328                                         id="region-header-second">
329                                         <div class="region-inner region-header-second-inner">
330                                                 <div
331                                                         class="block block-delta-blocks block-breadcrumb block-delta-blocks-breadcrumb odd block-without-title"
332                                                         id="block-delta-blocks-breadcrumb">
333                                                         <div class="block-inner clearfix">
334
335                                                                 <div class="content clearfix">
336                                                                         <div id="breadcrumb" class="clearfix">
337                                                                                 <ul class="breadcrumb">
338                                                                                         <li class="depth-1 odd first"><a href="/">Home</a></li>
339                                                                                         <li class="depth-2 even last"><a href="/About"
340                                                                                                 class="active">About</a></li>
341                                                                                 </ul>
342                                                                         </div>
343                                                                 </div>
344                                                         </div>
345                                                 </div>
346                                         </div>
347                                 </div>
348                         </div>
349                 </div>
350                 </header>
351                 
352                 
353                 <form name="custom_form" id="custom_form" action="jalview_examples.php" method="post">
354                 <input type="hidden" name="target" id="target" value="APPLETS"><br>
355                 </form>