2 * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3 * Copyright (C) $$Year-Rel$$ The Jalview Authors
5 * This file is part of Jalview.
7 * Jalview is free software: you can redistribute it and/or
8 * modify it under the terms of the GNU General Public License
9 * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
11 * Jalview is distributed in the hope that it will be useful, but
12 * WITHOUT ANY WARRANTY; without even the implied warranty
13 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
14 * PURPOSE. See the GNU General Public License for more details.
16 * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
17 * The Jalview Authors are detailed in the 'AUTHORS' file.
20 <div id="view_decorated" name="view_decorated" style="margin:8px; padding:10px; border: 2px solid red; text-align:center; display:none;"><b>Click <a href="index.html#javascriptLaunch"> here</a> to view decorated page</b></div>
22 <!-- boiler plate link to alternate demopage -->
23 <div style="width: 100%">
27 <!-- content template start -->
28 <SCRIPT type="text/javascript">
30 // From http://snipplr.com/view.php?codeview&id=1272
31 //----------------------------------------
32 //Wrapper function for constructing a request object.
34 // reqType: The HTTP request type, such as GET or POST.
35 // url: The URL of the server program.
36 // asynch: Whether to send the request asynchronously or not.
37 //----------------------------------------
39 function httpRequest(reqType,url,asynch,respHandle) {
41 // Mozilla-based browsers
42 if (window.XMLHttpRequest) {
43 request = new XMLHttpRequest();
44 } else if (window.ActiveXObject) {
45 request = new ActiveXObject("Msxml2.XMLHTTP");
47 request = new ActiveXObject("Microsoft.XMLHTTP");
51 // Request could still be null if neither ActiveXObject
52 // initialization succeeded
54 // If the reqType param is POST, then the fifth arg is the POSTed data
55 if (reqType.toLowerCase() != "post") {
56 initReq(reqType, url, asynch, respHandle);
59 var args = arguments[5];
60 if (args != null && args.length > 0) {
61 initReq(reqType, url, asynch, respHandle, args);
65 alert("Your browser does not permit the use of all " +
66 "of this application's features!");
71 //----------------------------------------
72 //Initialize a request object that is already constructed
73 //----------------------------------------
75 function initReq(reqType, url, bool, respHandle) {
77 // Specify the function that will handle the HTTP response
78 request.onreadystatechange = respHandle;
79 request.open(reqType, url, bool);
80 // If the reqType param is POST, then the
81 // fifth argument to the function is the POSTed data
82 if (reqType.toLowerCase() == "post") {
83 // Set the Content-Type header for a POST request
84 request.setRequestHeader("Content-Type", "application/x-ww-form-urlencoded; charset=UTF-8");
85 request.send(arguments[4]);
90 alert("The application cannot contact the server at the moment. " +
91 "Please try again in a few seconds.\n" +
92 "Error detail: " + errv.message);
96 // jalview launching with fetched data
98 function startJalview(aligURL,title,alwvar) {
100 httpRequest("get",aligURL,true,function() {
101 if (request.readyState == 4) {
102 alignment = request.responseText;
103 eval("var "+alwvar+" = document.JalviewLite.loadAlignment(alignment,title)");
112 <applet name="JalviewLite" code="jalview.bin.JalviewLite"
113 archive="jalviewApplet.jar,JmolApplet-14.2.14_2015.06.11.jar,java-json.jar,json_simple-1.1.jar" width="0" height="0">
114 <param name="debug" value="true"/>
115 <param name="showbutton" value="false"/>
118 <h2>Javascript Launch Button</h2><p>The button below demonstrates how JalviewLite can be launched via a javascript action. <a href="view-source:http://www.jalview.org/builds/develop/examples/javascriptLaunch.html" target="_blank">View the source here to see how it has been done</a> (If the link doesn't work on your browser try going to <a href="http://www.jalview.org/builds/develop/examples/javascriptLaunch.html">this page</a> and viewing the page source manually). </p>
120 <input type="button" name="Button1" value="Start"
121 onClick="startJalview('plantfdx.fa','Button1.alignment','alwvar')"/>
123 <!-- content template end -->