JAL-2629 fix expected length error for hmmbuild by uniquifying sequences
[jalview.git] / examples / jpred_msa.fasta
1 >FER_CAPAA Ferredoxin
2 ASYKVKLITPDGPIEFDCPDDVYILDQAEEAGHDLPYSCRAGSCSSCAGKIAGGAVDQTDGNFLDDDQLEEG
3 WVLTCVAYPQSDVTIETHKEAELVG-
4 >FER_CAPAN Ferredoxin, chloroplast precursor
5 ASYKVKLITPDGPIEFDCPDNVYILDQAEEAGHDLPYSCRAGSCSSCAGKIAGGAVDQTDGNFLDDDQLEEG
6 WVLTCVAYPQSDVTIETHKEAELVG-
7 >FER1_SOLLC Ferredoxin-1, chloroplast precursor
8 ASYKVKLITPEGPIEFECPDDVYILDQAEEEGHDLPYSCRAGSCSSCAGKVTAGSVDQSDGNFLDEDQEAAG
9 FVLTCVAYPKGDVTIETHKEEELTA-
10 >Q93XJ9_SOLTU Ferredoxin I precursor
11 ASYKVKLITPDGPIEFECPDDVYILDQAEEEGHDLPYSCRAGSCSSCAGKVTAGTVDQSDGKFLDDDQEAAG
12 FVLTCVAYPKCDVTIETHKEEELTA-
13 >FER1_MESCR Ferredoxin-1, chloroplast precursor
14 AAYKVTLVTPEGKQELECPDDVYILDAAEEAGIDLPYSCRAGSCSSCAGKVTSGSVNQDDGSFLDDDQIKEG
15 WVLTCVAYPTGDVTIETHKEEELTA-
16 >FER1_SPIOL Ferredoxin-1, chloroplast precursor
17 AAYKVTLVTPTGNVEFQCPDDVYILDAAEEEGIDLPYSCRAGSCSSCAGKLKTGSLNQDDQSFLDDDQIDEG
18 WVLTCAAYPVSDVTIETHKEEELTA-
19 >FER1_ARATH Ferredoxin-1, chloroplast precursor
20 ATYKVKFITPEGELEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDEQIGEG
21 FVLTCAAYPTSDVTIETHKEEDIV--
22 >FER2_ARATH Ferredoxin-2, chloroplast precursor
23 ATYKVKFITPEGEQEVECEEDVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQMSEG
24 YVLTCVAYPTSDVVIETHKEEAIM--
25 >FER1_PEA Ferredoxin-1, chloroplast precursor
26 ASYKVKLVTPDGTQEFECPSDVYILDHAEEVGIDLPYSCRAGSCSSCAGKVVGGEVDQSDGSFLDDEQIEAG
27 FVLTCVAYPTSDVVIETHKEEDLTA-
28 >Q7XA98_TRIPR Ferredoxin I
29 ATYKVKLITPEGPQEFDCPDDVYILDHAEEVGIELPYSCRAGSCSSCAGKVVNGNVNQEDGSFLDDEQIEGG
30 WVLTCVAFPTSDVTIETHKEEELTA-
31 >FER1_MAIZE Ferredoxin-1, chloroplast precursor
32 ATYNVKLITPEGEVELQVPDDVYILDQAEEDGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSYLDDGQIADG
33 WVLTCHAYPTSDVVIETHKEEELTGA
34 >O80429_MAIZE Ferredoxin
35 ATYNVKLITPEGEVELQVPDDVYILDFAEEEGIDLPFSCRAGSCSSCAGKVVSGSVDQSDQSFLNDNQVADG
36 WVLTCAAYPTSDVVIETHKEDDLL--
37 >Q93Z60_ARATH At1g10960/T19D16_12
38 ATYKVKFITPEGEQEVECEEDVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDD------
39 --------------------------
40 >FER3_RAPSA Ferredoxin, leaf L-A
41 ATYKVKFITPEGEQEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDDQIAEG
42 FVLTCAAYPTSDVTIETHREEDMV--
43 >FER_BRANA Ferredoxin
44 ATYKVKFITPEGEQEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGFVDQSDESFLDDDQIAEG
45 FVLTCAAYPTSDVTIETHKEEELV--