examples/testdata/phyre2results/56da5616b4559c93/aligs/c2piaA_.20.alig.html

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   2 <title>Phyre 2 alignment of FER_CAPAN_1-144 with c2piaA_</title>
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  71 <form ENCTYPE="multipart/form-data" METHOD="POST" ACTION="../../../webscripts/jobmonitor.cgi"><table class="midshade" width=100% border=0 frame=below><tr>
  72 <td align=left><a href="../summary.html">Return to main results</a></td>
  73 <td align=right>Retrieve Phyre Job Id <input type="text" SIZE=30 NAME="jobid"><input type="submit" value="Fetch" name="fetch"></font>
  74 </td></tr></table></form>
  75 <div id="tiplayer" style="position:absolute; visibility:hidden; z-index:10000;"></div>
  76 <center><p><table width=70% border=0 cellspacing=1 cellpadding=1><tr><td><img src="../webimg/playing.png"></td>
  77 <td><table class="midshade"><tr><td class="darkshade" style="width:12em;">Job Description</td><td colspan=3>FER_CAPAN_1-144</td></tr><tr><td class="darkshade">Confidence</td><td>99.89%</td><td class="darkshade">Date</td><td>Wed Jan  4 12:02:18 GMT 2017</td></tr>
  78 <tr><td class="darkshade">Rank</td><td>20</td><td class="darkshade">Aligned Residues</td><td>116</td></tr>
  79 <tr><td class="darkshade">% Identity</td><td>22%</td><td class="darkshade">Template</td><td>c2piaA_</td></tr>
  80 <tr><td class="darkshade">PDB info</td>
  81 <td><b>PDB header:</b>reductase</td><td><b>Chain: </b>A: <b>PDB Molecule:</b>phthalate dioxygenase reductase;</td><td>
  82 <b>PDBTitle:</b> phthalate dioxygenase reductase: a modular structure for2 electron transfer from pyridine nucleotides to [2fe-2s]
  83 </td></tr>
  84 <tr><td class="darkshade">Resolution</td><td colspan=3>2.00 &#8491</td></tr>
  85 <tr><td class="darkshade">Model Dimensions (&#8491;)</td><td colspan=3><b>X</b>:36.238 <b>Y</b>:56.145 <b>Z</b>:32.097
  86 </td></tr>
  87 </table>
  88 </tr></table></p>
  89 <p><button onclick="toggle('confidence');">Show / Hide SS confidence</button></p>
  90 <p><button onclick="toggle('consqual');">Show / Hide Conservation and Alignment quality</button></p>
  91 <p><table width=95%><tr><td align=left><a class="logo" href="http://www.sbg.bio.ic.ac.uk/phyre2/webscripts/make_pdf.cgi?fileid=56da5616b4559c93/aligs/c2piaA_.20.alig.html" onClick ="return hideTip();" onMouseOver="return tooltip('Generate JPEG image of this page.', '', 'width:200');" onMouseOut="return hideTip();"><img border=0 src="../webimg/jpeg_icon.jpg"></a></td></tr></table></p>
  92 <table border=0><tr><td bgcolor=darkred>&nbsp;&nbsp</td><td>Insertion relative to template</td>
  93 <tr><td bgcolor=orange>&nbsp;&nbsp</td><td>Deletion relative to template</td></tr>
  94 <tr><td style="border-style:solid; border-width:thick; border-color:red;">&nbsp;&nbsp</td><td>Catalytic residue from the <a href="http://www.ebi.ac.uk/thornton-srv/databases/CSA/">CSA</a></td></tr>
  95 <tr><td colspan=2>&nbsp</td></tr>
  96 <tr><td colspan=2><a href="http://www.sbg.bio.ic.ac.uk/phyre2/html/help.cgi?id=help/interpret_normal#alignment">Detailed help on interpreting your alignment</a></td></tr></table>
  97 <br><br>
  98 <table cellpadding=0 cellspacing=0>
  99 <tr>
 100 <td style="width:100px;">&nbsp</td><td>&nbsp</td>
 101 <td class="index">1</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td>.</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td class="index">10</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td>.</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td class="index">20</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td>.</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td class="index">30</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td>.</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td class="index">40</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td>.</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td class="index">50</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td>.</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td class="index">60</td></tr>
 102 <tr>
 103 <td class="darkshade">Predicted Secondary structure</td><td>&nbsp</td>
 104 <td><hr></td><td><hr></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td><hr></td><td><hr></td><td><hr></td><td><hr></td><td><hr></td><td><hr></td><td><hr></td><td><hr></td><td><hr></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td><hr></td><td><hr></td><td><hr></td><td><hr></td><td><hr></td><td><hr></td><td><hr></td><td><hr></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td><hr></td><td><hr></td><td><hr></td><td><hr></td><td><hr></td><td><hr></td><td><hr></td><td><hr></td><td><hr></td><td><hr></td><td><hr></td><td><hr></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_a.png"></td><td><hr></td><td><hr></td><td><hr></td><td class="strand"><img class="strimg" src="../webimg/beta_a.png"></td></tr>
 105 <tr confidence=1 style="display:none;">
 106 <td class="darkshade">Query SS confidence</td><td>&nbsp</td>
 107 <td><hr color="#c93c38" size=4></td><td><hr color="#91a0cb" size=4></td><td><hr color="#6f6da5" size=4></td><td><hr color="#76c0d1" size=4></td><td><hr color="#65b449" size=4></td><td><hr color="#65b449" size=4></td><td><hr color="#65b449" size=4></td><td><hr color="#65b449" size=4></td><td><hr color="#41ac82" size=4></td><td><hr color="#76c0d1" size=4></td><td><hr color="#3f3d81" size=4></td><td><hr color="#76c0d1" size=4></td><td><hr color="#76c0d1" size=4></td><td><hr color="#65b449" size=4></td><td><hr color="#41ac82" size=4></td><td><hr color="#41ac82" size=4></td><td><hr color="#41ac82" size=4></td><td><hr color="#91a0cb" size=4></td><td><hr color="#3f3d81" size=4></td><td><hr color="#3f3d81" size=4></td><td><hr color="#3f3d81" size=4></td><td><hr color="#3f3d81" size=4></td><td><hr color="#3f3d81" size=4></td><td><hr color="#3f3d81" size=4></td><td><hr color="#3f3d81" size=4></td><td><hr color="#76c0d1" size=4></td><td><hr color="#41ac82" size=4></td><td><hr color="#65b449" size=4></td><td><hr color="#65b449" size=4></td><td><hr color="#41ac82" size=4></td><td><hr color="#6f6da5" size=4></td><td><hr color="#3f3d81" size=4></td><td><hr color="#3f3d81" size=4></td><td><hr color="#6f6da5" size=4></td><td><hr color="#3f3d81" size=4></td><td><hr color="#3f3d81" size=4></td><td><hr color="#3f3d81" size=4></td><td><hr color="#6f6da5" size=4></td><td><hr color="#76c0d1" size=4></td><td><hr color="#65b449" size=4></td><td><hr color="#b7db48" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#b7db48" size=4></td><td><hr color="#b7db48" size=4></td><td><hr color="#b7db48" size=4></td><td><hr color="#b7db48" size=4></td><td><hr color="#41ac82" size=4></td><td><hr color="#3f3d81" size=4></td><td><hr color="#e68d3d" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#91a0cb" size=4></td><td><hr color="#b7db48" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#91a0cb" size=4></td></tr>
 108 <tr>
 109 <td class="midshadess">Query Sequence</td><td>&nbsp</td>
 110 <td style="color:009900; background-color:#d2d0c1">M</td><td style="color:ff6600;">A</td><td style="color:ff6600;">S</td><td style="color:009900; background-color:#d2d0c1">V</td><td style="color:ff6600;">S</td><td style="color:ff6600;">A</td><td style="color:ff6600;">T</td><td style="color:009900;">M</td><td style="color:009900;">I</td><td style="color:ff6600;">S</td><td style="color:ff6600;">T</td><td style="color:ff6600;">S</td><td style="color:0000cc;">F</td><td style="color:009900;">M</td><td style="color:ff6600;">P</td><td style="color:990000;">R</td><td style="color:990000;">K</td><td style="color:ff6600;">P</td><td style="color:ff6600;">A</td><td style="color:009900;">V</td><td style="color:ff6600;">T</td><td style="color:ff6600; background-color:#d2d0c1">S</td><td style="color:009900;">L</td><td style="color:990000;">K</td><td style="color:ff6600;">P</td><td style="color:009900;">I</td><td style="color:ff6600;">P</td><td style="color:990000;">N</td><td style="color:009900;">V</td><td style="color:ff6600;">G</td><td style="color:990000;">E</td><td style="color:ff6600;">A</td><td style="color:009900;">L</td><td style="color:0000cc;">F</td><td style="color:ff6600;">G</td><td style="color:009900;">L</td><td style="color:990000;">K</td><td style="color:ff6600;">S</td><td style="color:ff6600;">A</td><td style="color:990000;">N</td><td style="color:ff6600;">G</td><td style="color:ff6600;">G</td><td style="color:990000;">K</td><td style="color:009900;">V</td><td style="color:ff6600;">T</td><td style="color:6600CC;">C</td><td style="color:009900;">M</td><td style="color:ff6600;">A</td><td style="color:ff6600;">S</td><td style="color:0000cc;">Y</td><td style="color:990000;">K</td><td style="color:009900; background-color:#d2d0c1">V</td><td style="color:990000;">K</td><td style="color:009900; background-color:#d2d0c1">L</td><td style="color:009900;">I</td><td style="color:ff6600;">T</td><td style="color:ff6600;">P</td><td style="color:990000;">D</td><td style="color:ff6600;">G</td><td style="color:ff6600;">P</td></tr>
 111 <tr consqual=1 style="display:none">
 112 <td class="darkshade">Query Conservation</td><td>&nbsp</td>
 113 <td><hr color=#737065 size=4></td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td><hr color=#737065 size=4></td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td><hr color=#737065 size=4></td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td><hr color=#737065 size=4></td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td><hr color=#737065 size=10></td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td><hr color=#737065 size=4></td><td>&nbsp</td></tr>
 114 <tr consqual=1 style="display:none">
 115 <td class="midshadess">Alig confidence</td><td>&nbsp</td>
 116 <td><hr color="#c93c38" size=4></td><td><hr color="#65b449" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#65b449" size=4></td><td><hr color="#65b449" size=4></td><td><hr color="#65b449" size=4></td><td><hr color="#f1d532" size=4></td><td align=center>.</td><td align=center>.</td><td><hr color="#65b449" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#65b449" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#65b449" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#65b449" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#65b449" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#65b449" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#65b449" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#65b449" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#65b449" size=4></td><td><hr color="#65b449" size=4></td><td><hr color="#65b449" size=4></td><td><hr color="#65b449" size=4></td><td><hr color="#65b449" size=4></td><td align=center>.</td><td align=center>.</td><td align=center>.</td><td align=center>.</td><td align=center>.</td><td align=center>.</td><td align=center>.</td><td align=center>.</td><td align=center>.</td><td align=center>.</td><td align=center>.</td><td align=center>.</td><td align=center>.</td><td align=center>.</td><td><hr color="#65b449" size=4></td><td><hr color="#65b449" size=4></td><td><hr color="#65b449" size=4></td><td><hr color="#65b449" size=4></td><td><hr color="#65b449" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#65b449" size=4></td><td><hr color="#65b449" size=4></td><td><hr color="#65b449" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#65b449" size=4></td><td align=center>.</td></tr>
 117 <tr consqual=1 style="display:none">
 118 <td class="darkshade">Template Conservation</td><td>&nbsp</td>
 119 <td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td><hr color=#d2d0c1 size=4></td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td><hr color=#d2d0c1 size=4></td><td align=center>.</td><td align=center>.</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td><hr color=#d2d0c1 size=4></td><td>&nbsp</td><td>&nbsp</td><td><hr color=#d2d0c1 size=4></td><td>&nbsp</td><td><hr color=#d2d0c1 size=10></td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td align=center>.</td><td align=center>.</td><td align=center>.</td><td align=center>.</td><td align=center>.</td><td align=center>.</td><td align=center>.</td><td align=center>.</td><td align=center>.</td><td align=center>.</td><td align=center>.</td><td align=center>.</td><td align=center>.</td><td align=center>.</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td><hr color=#d2d0c1 size=10></td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td align=center>.</td></tr>
 120 <tr>
 121 <td class="midshadess">Template Sequence</td><td>&nbsp</td>
 122 <td style="color:009900; background-color:#d2d0c1">M</td><td style="color:990000;">D</td><td style="color:ff6600;">T</td><td style="color:009900; background-color:#d2d0c1">V</td><td style="color:990000;">R</td><td style="color:990000;">D</td><td style="color:009900;">M</td><td style="color:ff6600;">T</td><td align=center bgcolor=darkred style="color:white;">.</td>
 123 <td align=center bgcolor=darkred style="color:white;">.</td>
 124 <td style="color:ff6600;">G</td><td style="color:990000;">H</td><td style="color:6600CC;">W</td><td style="color:ff6600;">P</td><td style="color:ff6600;">S</td><td style="color:ff6600;">G</td><td style="color:ff6600;">T</td><td style="color:009900;">V</td><td style="color:990000;">H</td><td style="color:0000cc;">F</td><td style="color:990000; border-style:solid; border-width:thick; border-color:red;">E</td><td style="color:ff6600; background-color:#d2d0c1">S</td><td style="color:0000cc;">F</td><td style="color:ff6600;">G</td><td style="color:ff6600;">A</td><td style="color:ff6600;">T</td><td style="color:990000;">N</td><td style="color:ff6600;">T</td><td style="color:990000;">N</td><td style="color:ff6600;">A</td><td style="color:990000;">R</td><td style="color:990000;">E</td><td align=center bgcolor=darkred style="color:white;">.</td>
 125 <td align=center bgcolor=darkred style="color:white;">.</td>
 126 <td align=center bgcolor=darkred style="color:white;">.</td>
 127 <td align=center bgcolor=darkred style="color:white;">.</td>
 128 <td align=center bgcolor=darkred style="color:white;">.</td>
 129 <td align=center bgcolor=darkred style="color:white;">.</td>
 130 <td align=center bgcolor=darkred style="color:white;">.</td>
 131 <td align=center bgcolor=darkred style="color:white;">.</td>
 132 <td align=center bgcolor=darkred style="color:white;">.</td>
 133 <td align=center bgcolor=darkred style="color:white;">.</td>
 134 <td align=center bgcolor=darkred style="color:white;">.</td>
 135 <td align=center bgcolor=darkred style="color:white;">.</td>
 136 <td align=center bgcolor=darkred style="color:white;">.</td>
 137 <td align=center bgcolor=darkred style="color:white;">.</td>
 138 <td style="color:990000;">N</td><td style="color:ff6600;">T</td><td style="color:ff6600;">P</td><td style="color:0000cc;">F</td><td style="color:ff6600;">T</td><td style="color:009900; background-color:#d2d0c1">V</td><td style="color:990000;">R</td><td style="color:009900; background-color:#d2d0c1">L</td><td style="color:ff6600;">S</td><td style="color:990000;">R</td><td style="color:ff6600;">S</td><td style="color:ff6600;">G</td><td style="color:ff6600;">T</td><td align=center bgcolor=darkred style="color:white;">.</td>
 139 </tr>
 140 <tr>
 141 <td nowrap class="darkshade">Template Known Secondary structure</td><td>&nbsp</td>
 142 <td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td>T</td><td align=center>.</td><td align=center>.</td><td>T</td><td>T</td><td>S</td><td><hr></td><td>T</td><td>T</td><td><hr></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_a.png"></td><td><hr></td><td><hr></td><td><hr></td><td><hr></td><td><hr></td><td><hr></td><td><hr></td><td><hr></td><td><hr></td><td>S</td><td><hr></td><td align=center>.</td><td align=center>.</td><td align=center>.</td><td align=center>.</td><td align=center>.</td><td align=center>.</td><td align=center>.</td><td align=center>.</td><td align=center>.</td><td align=center>.</td><td align=center>.</td><td align=center>.</td><td align=center>.</td><td align=center>.</td><td><hr></td><td><hr></td><td><hr></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_a.png"></td><td>T</td><td>T</td><td>T</td><td><hr></td><td><hr></td><td align=center>.</td></tr>
 143 <tr>
 144 <td class="midshadess">Template Predicted Secondary structure</td><td>&nbsp</td>
 145 <td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td align=center>.</td><td align=center>.</td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td><hr></td><td><hr></td><td><hr></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td><hr></td><td><hr></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td><hr></td><td><hr></td><td><hr></td><td><hr></td><td><hr></td><td><hr></td><td><hr></td><td><hr></td><td><hr></td><td><hr></td><td align=center>.</td><td align=center>.</td><td align=center>.</td><td align=center>.</td><td align=center>.</td><td align=center>.</td><td align=center>.</td><td align=center>.</td><td align=center>.</td><td align=center>.</td><td align=center>.</td><td align=center>.</td><td align=center>.</td><td align=center>.</td><td><hr></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_a.png"></td><td><hr></td><td><hr></td><td><hr></td><td><hr></td><td><hr></td><td align=center>.</td></tr>
 146 <tr confidence=1 style="display:none">
 147 <td class="darkshade">Template SS confidence</td><td>&nbsp</td>
 148 <td><hr color="#c93c38" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="FFFFFF" size=4></td><td><hr color="FFFFFF" size=4></td><td><hr color="#76c0d1" size=4></td><td><hr color="#b7db48" size=4></td><td><hr color="#e68d3d" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#b7db48" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#6f6da5" size=4></td><td><hr color="#3f3d81" size=4></td><td><hr color="#91a0cb" size=4></td><td><hr color="#6f6da5" size=4></td><td><hr color="#6f6da5" size=4></td><td><hr color="#3f3d81" size=4></td><td><hr color="#6f6da5" size=4></td><td><hr color="#91a0cb" size=4></td><td><hr color="#91a0cb" size=4></td><td><hr color="#91a0cb" size=4></td><td><hr color="#76c0d1" size=4></td><td><hr color="#76c0d1" size=4></td><td><hr color="#41ac82" size=4></td><td><hr color="#65b449" size=4></td><td><hr color="#b7db48" size=4></td><td><hr color="FFFFFF" size=4></td><td><hr color="FFFFFF" size=4></td><td><hr color="FFFFFF" size=4></td><td><hr color="FFFFFF" size=4></td><td><hr color="FFFFFF" size=4></td><td><hr color="FFFFFF" size=4></td><td><hr color="FFFFFF" size=4></td><td><hr color="FFFFFF" size=4></td><td><hr color="FFFFFF" size=4></td><td><hr color="FFFFFF" size=4></td><td><hr color="FFFFFF" size=4></td><td><hr color="FFFFFF" size=4></td><td><hr color="FFFFFF" size=4></td><td><hr color="FFFFFF" size=4></td><td><hr color="#41ac82" size=4></td><td><hr color="#3f3d81" size=4></td><td><hr color="#41ac82" size=4></td><td><hr color="#e68d3d" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#e68d3d" size=4></td><td><hr color="#b7db48" size=4></td><td><hr color="#e68d3d" size=4></td><td><hr color="#e68d3d" size=4></td><td><hr color="#41ac82" size=4></td><td><hr color="#6f6da5" size=4></td><td><hr color="FFFFFF" size=4></td></tr>
 149 <tr>
 150 <td style="width:100px;">&nbsp</td><td>&nbsp</td>
 151 <td class="index">205</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td class="index">210</td><td class="index">.</td><td class="index">.</td><td></td>
 152 <td></td>
 153 <td class="index">.</td><td class="index">.</td><td>.</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td class="index">220</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td>.</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td class="index">230</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td></td>
 154 <td></td>
 155 <td></td>
 156 <td></td>
 157 <td></td>
 158 <td></td>
 159 <td></td>
 160 <td></td>
 161 <td></td>
 162 <td></td>
 163 <td></td>
 164 <td></td>
 165 <td></td>
 166 <td></td>
 167 <td>.</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td class="index">240</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td>.</td><td class="index">.</td><td class="index">.</td><td></td>
 168 </tr>
 169 <tr><td>&nbsp</td></tr>
 170 <tr>
 171 <td style="width:100px;">&nbsp</td><td>&nbsp</td>
 172 <td class="index">61</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td>.</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td class="index">70</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td>.</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td class="index">80</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td>.</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td class="index">90</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td>.</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td class="index">100</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td>.</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td class="index">110</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td>.</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td class="index">120</td></tr>
 173 <tr>
 174 <td class="darkshade">Predicted Secondary structure</td><td>&nbsp</td>
 175 <td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_a.png"></td><td><hr></td><td><hr></td><td><hr></td><td><hr></td><td><hr></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td><hr></td><td><hr></td><td><hr></td><td><hr></td><td><hr></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_a.png"></td><td><hr></td><td><hr></td><td><hr></td><td><hr></td><td><hr></td><td><hr></td><td><hr></td><td><hr></td><td><hr></td><td><hr></td><td><hr></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_a.png"></td><td><hr></td><td><hr></td><td><hr></td><td><hr></td><td><hr></td><td><hr></td><td><hr></td><td><hr></td><td><hr></td><td><hr></td><td><hr></td><td><hr></td><td><hr></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td><hr></td><td><hr></td><td><hr></td><td class="strand"><img class="strimg" src="../webimg/beta_a.png"></td></tr>
 176 <tr confidence=1 style="display:none;">
 177 <td class="darkshade">Query SS confidence</td><td>&nbsp</td>
 178 <td><hr color="#c93c38" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#b7db48" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#e68d3d" size=4></td><td><hr color="#91a0cb" size=4></td><td><hr color="#e68d3d" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#e68d3d" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#e68d3d" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#3f3d81" size=4></td><td><hr color="#3f3d81" size=4></td><td><hr color="#3f3d81" size=4></td><td><hr color="#91a0cb" size=4></td><td><hr color="#76c0d1" size=4></td><td><hr color="#76c0d1" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#e68d3d" size=4></td><td><hr color="#65b449" size=4></td><td><hr color="#e68d3d" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#b7db48" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#6f6da5" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#41ac82" size=4></td><td><hr color="#6f6da5" size=4></td><td><hr color="#41ac82" size=4></td><td><hr color="#91a0cb" size=4></td><td><hr color="#6f6da5" size=4></td><td><hr color="#6f6da5" size=4></td><td><hr color="#65b449" size=4></td><td><hr color="#b7db48" size=4></td><td><hr color="#b7db48" size=4></td><td><hr color="#b7db48" size=4></td><td><hr color="#b7db48" size=4></td><td><hr color="#b7db48" size=4></td><td><hr color="#e68d3d" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#b7db48" size=4></td><td><hr color="#e68d3d" size=4></td><td><hr color="#76c0d1" size=4></td><td><hr color="#41ac82" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#65b449" size=4></td></tr>
 179 <tr>
 180 <td class="midshadess">Query Sequence</td><td>&nbsp</td>
 181 <td style="color:009900;">I</td><td style="color:990000;">E</td><td style="color:0000cc; background-color:#d2d0c1">F</td><td style="color:990000;">D</td><td style="color:6600CC;">C</td><td style="color:ff6600; background-color:#d2d0c1">P</td><td style="color:990000;">D</td><td style="color:990000; background-color:#d2d0c1">N</td><td style="color:009900;">V</td><td style="color:0000cc;">Y</td><td style="color:009900; background-color:#d2d0c1">I</td><td style="color:009900; background-color:#d2d0c1">L</td><td style="color:990000;">D</td><td style="color:990000;">Q</td><td style="color:ff6600;">A</td><td style="color:990000;">E</td><td style="color:990000;">E</td><td style="color:ff6600; background-color:#d2d0c1">A</td><td style="color:ff6600;">G</td><td style="color:990000;">H</td><td style="color:990000;">D</td><td style="color:009900;">L</td><td style="color:ff6600; background-color:#d2d0c1">P</td><td style="color:0000cc;">Y</td><td style="color:ff6600; background-color:#d2d0c1">S</td><td style="color:6600CC; background-color:#d2d0c1">C</td><td style="color:990000;">R</td><td style="color:ff6600;">A</td><td style="color:ff6600; background-color:#d2d0c1">G</td><td style="color:ff6600;">S</td><td style="color:6600CC; background-color:#d2d0c1">C</td><td style="color:ff6600;">S</td><td style="color:ff6600; background-color:#d2d0c1">S</td><td style="color:6600CC; background-color:#d2d0c1">C</td><td style="color:ff6600;">A</td><td style="color:ff6600;">G</td><td style="color:990000;">K</td><td style="color:009900;">I</td><td style="color:ff6600;">A</td><td style="color:ff6600;">G</td><td style="color:ff6600; background-color:#d2d0c1">G</td><td style="color:ff6600;">A</td><td style="color:009900;">V</td><td style="color:990000; background-color:#d2d0c1">D</td><td style="color:990000;">Q</td><td style="color:ff6600;">T</td><td style="color:990000; background-color:#d2d0c1">D</td><td style="color:ff6600;">G</td><td style="color:990000;">N</td><td style="color:0000cc;">F</td><td style="color:009900;">L</td><td style="color:990000;">D</td><td style="color:990000;">D</td><td style="color:990000; background-color:#d2d0c1">D</td><td style="color:990000;">Q</td><td style="color:009900;">L</td><td style="color:990000;">E</td><td style="color:990000;">E</td><td style="color:ff6600;">G</td><td style="color:6600CC;">W</td></tr>
 182 <tr consqual=1 style="display:none">
 183 <td class="darkshade">Query Conservation</td><td>&nbsp</td>
 184 <td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td><hr color=#737065 size=4></td><td><hr color=#737065 size=4></td><td><hr color=#737065 size=10></td><td><hr color=#737065 size=4></td><td><hr color=#737065 size=4></td><td><hr color=#737065 size=4></td><td>&nbsp</td><td>&nbsp</td><td><hr color=#737065 size=4></td><td><hr color=#737065 size=10></td><td><hr color=#737065 size=4></td><td>&nbsp</td><td><hr color=#737065 size=4></td><td>&nbsp</td><td>&nbsp</td><td><hr color=#737065 size=4></td><td><hr color=#737065 size=10></td><td><hr color=#737065 size=4></td><td>&nbsp</td><td><hr color=#737065 size=10></td><td>&nbsp</td><td><hr color=#737065 size=10></td><td><hr color=#737065 size=4></td><td><hr color=#737065 size=4></td><td><hr color=#737065 size=10></td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td><hr color=#737065 size=4></td><td>&nbsp</td><td>&nbsp</td><td><hr color=#737065 size=10></td><td>&nbsp</td><td><hr color=#737065 size=4></td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td><hr color=#737065 size=4></td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td><hr color=#737065 size=4></td><td>&nbsp</td></tr>
 185 <tr consqual=1 style="display:none">
 186 <td class="midshadess">Alig confidence</td><td>&nbsp</td>
 187 <td align=center>.</td><td><hr color="#f1d532" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#65b449" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#65b449" size=4></td><td><hr color="#f1d532" size=4></td><td align=center>.</td><td align=center>.</td><td><hr color="#65b449" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#65b449" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#65b449" size=4></td><td><hr color="#65b449" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#c93c38" size=4></td></tr>
 188 <tr consqual=1 style="display:none">
 189 <td class="darkshade">Template Conservation</td><td>&nbsp</td>
 190 <td align=center>.</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td><hr color=#d2d0c1 size=4></td><td><hr color=#d2d0c1 size=4></td><td><hr color=#d2d0c1 size=10></td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td><hr color=#d2d0c1 size=4></td><td>&nbsp</td><td>&nbsp</td><td><hr color=#d2d0c1 size=4></td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td><hr color=#d2d0c1 size=10></td><td>&nbsp</td><td>&nbsp</td><td><hr color=#d2d0c1 size=10></td><td>&nbsp</td><td><hr color=#d2d0c1 size=10></td><td><hr color=#d2d0c1 size=4></td><td>&nbsp</td><td><hr color=#d2d0c1 size=10></td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td><hr color=#d2d0c1 size=10></td><td>&nbsp</td><td><hr color=#d2d0c1 size=4></td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td align=center>.</td><td align=center>.</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td></tr>
 191 <tr>
 192 <td class="midshadess">Template Sequence</td><td>&nbsp</td>
 193 <td align=center bgcolor=darkred style="color:white;">.</td>
 194 <td style="color:ff6600;">S</td><td style="color:0000cc; background-color:#d2d0c1">F</td><td style="color:990000;">E</td><td style="color:009900;">I</td><td style="color:ff6600; background-color:#d2d0c1">P</td><td style="color:ff6600;">A</td><td style="color:990000; background-color:#d2d0c1">N</td><td style="color:990000;">R</td><td style="color:ff6600;">S</td><td style="color:009900; background-color:#d2d0c1">I</td><td style="color:009900; background-color:#d2d0c1">L</td><td style="color:990000;">E</td><td style="color:009900;">V</td><td style="color:009900;">L</td><td style="color:990000;">R</td><td style="color:990000;">D</td><td style="color:ff6600; background-color:#d2d0c1">A</td><td style="color:990000;">N</td><td style="color:009900;">V</td><td style="color:990000;">R</td><td style="color:009900;">V</td><td style="color:ff6600; background-color:#d2d0c1">P</td><td style="color:ff6600;">S</td><td style="color:ff6600; background-color:#d2d0c1">S</td><td style="color:6600CC; background-color:#d2d0c1">C</td><td style="color:990000;">E</td><td style="color:ff6600;">S</td><td style="color:ff6600; background-color:#d2d0c1">G</td><td style="color:ff6600;">T</td><td style="color:6600CC; background-color:#d2d0c1">C</td><td style="color:ff6600;">G</td><td style="color:ff6600; background-color:#d2d0c1">S</td><td style="color:6600CC; background-color:#d2d0c1">C</td><td style="color:990000;">K</td><td style="color:ff6600;">T</td><td style="color:ff6600;">A</td><td style="color:009900;">L</td><td style="color:6600CC;">C</td><td style="color:ff6600;">S</td><td style="color:ff6600; background-color:#d2d0c1">G</td><td style="color:990000;">E</td><td style="color:ff6600;">A</td><td style="color:990000; background-color:#d2d0c1">D</td><td style="color:990000;">H</td><td style="color:990000;">R</td><td style="color:990000; background-color:#d2d0c1">D</td><td align=center bgcolor=darkred style="color:white;">.</td>
 195 <td align=center bgcolor=darkred style="color:white;">.</td>
 196 <td style="color:009900;">M</td><td style="color:009900;">V</td><td style="color:009900;">L</td><td style="color:990000;">R</td><td style="color:990000; background-color:#d2d0c1">D</td><td style="color:990000;">D</td><td style="color:990000;">E</td><td style="color:990000;">K</td><td style="color:ff6600;">G</td><td style="color:ff6600;">T</td><td style="color:990000;">Q</td></tr>
 197 <tr>
 198 <td nowrap class="darkshade">Template Known Secondary structure</td><td>&nbsp</td>
 199 <td align=center>.</td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_a.png"></td><td><hr></td><td>T</td><td>T</td><td>S</td><td><hr></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td>T</td><td>T</td><td><hr></td><td><hr></td><td><hr></td><td><hr></td><td><hr></td><td>S</td><td><hr></td><td>S</td><td>S</td><td>S</td><td>S</td><td>S</td><td><hr></td><td>T</td><td>T</td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_a.png"></td><td>S</td><td><hr></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_a.png"></td><td><hr></td><td><hr></td><td><hr></td><td align=center>.</td><td align=center>.</td><td>S</td><td>S</td><td><hr></td><td><hr></td><td>T</td><td>T</td><td>T</td><td>T</td><td>T</td><td>T</td><td class="strand"><img class="strimg" src="../webimg/beta_a.png"></td></tr>
 200 <tr>
 201 <td class="midshadess">Template Predicted Secondary structure</td><td>&nbsp</td>
 202 <td align=center>.</td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_a.png"></td><td><hr></td><td><hr></td><td><hr></td><td><hr></td><td><hr></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td><hr></td><td><hr></td><td><hr></td><td><hr></td><td><hr></td><td><hr></td><td><hr></td><td><hr></td><td><hr></td><td><hr></td><td><hr></td><td><hr></td><td><hr></td><td><hr></td><td><hr></td><td><hr></td><td><hr></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_a.png"></td><td><hr></td><td><hr></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_a.png"></td><td><hr></td><td><hr></td><td><hr></td><td align=center>.</td><td align=center>.</td><td><hr></td><td><hr></td><td><hr></td><td><hr></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td><hr></td><td><hr></td><td class="strand"><img class="strimg" src="../webimg/beta_a.png"></td></tr>
 203 <tr confidence=1 style="display:none">
 204 <td class="darkshade">Template SS confidence</td><td>&nbsp</td>
 205 <td><hr color="FFFFFF" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#65b449" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#e68d3d" size=4></td><td><hr color="#6f6da5" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#e68d3d" size=4></td><td><hr color="#e68d3d" size=4></td><td><hr color="#e68d3d" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#e68d3d" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#65b449" size=4></td><td><hr color="#65b449" size=4></td><td><hr color="#b7db48" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#e68d3d" size=4></td><td><hr color="#e68d3d" size=4></td><td><hr color="#b7db48" size=4></td><td><hr color="#b7db48" size=4></td><td><hr color="#41ac82" size=4></td><td><hr color="#41ac82" size=4></td><td><hr color="#6f6da5" size=4></td><td><hr color="#b7db48" size=4></td><td><hr color="#e68d3d" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#41ac82" size=4></td><td><hr color="#6f6da5" size=4></td><td><hr color="#76c0d1" size=4></td><td><hr color="#3f3d81" size=4></td><td><hr color="#41ac82" size=4></td><td><hr color="#41ac82" size=4></td><td><hr color="#3f3d81" size=4></td><td><hr color="#65b449" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="FFFFFF" size=4></td><td><hr color="FFFFFF" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#e68d3d" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#65b449" size=4></td><td><hr color="#6f6da5" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#b7db48" size=4></td><td><hr color="#6f6da5" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#e68d3d" size=4></td><td><hr color="#65b449" size=4></td></tr>
 206 <tr>
 207 <td style="width:100px;">&nbsp</td><td>&nbsp</td>
 208 <td></td>
 209 <td class="index">248</td><td class="index">.</td><td class="index">250</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td>.</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td class="index">260</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td>.</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td class="index">270</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td>.</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td class="index">280</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td>.</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td class="index">290</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td></td>
 210 <td></td>
 211 <td class="index">.</td><td>.</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td class="index">300</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td class="index">.</td></tr>
 212 <tr><td>&nbsp</td></tr>
 213 <tr>
 214 <td style="width:100px;">&nbsp</td><td>&nbsp</td>
 215 <td class="index">121</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td>.</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td class="index">130</td><td class="index">.</td><td></td>
 216 <td class="index">.</td><td class="index">.</td><td class="index">.</td><td>.</td><td class="index">.</td></tr>
 217 <tr>
 218 <td class="darkshade">Predicted Secondary structure</td><td>&nbsp</td>
 219 <td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_a.png"></td><td><hr></td><td><hr></td><td><hr></td><td align=center>.</td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_a.png"></td></tr>
 220 <tr confidence=1 style="display:none;">
 221 <td class="darkshade">Query SS confidence</td><td>&nbsp</td>
 222 <td><hr color="#c93c38" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#b7db48" size=4></td><td><hr color="#41ac82" size=4></td><td><hr color="#76c0d1" size=4></td><td><hr color="#91a0cb" size=4></td><td><hr color="#41ac82" size=4></td><td><hr color="#65b449" size=4></td><td><hr color="#3f3d81" size=4></td><td><hr color="#b7db48" size=4></td><td><hr color="#f1d532" size=4></td><td align=center>.</td>
 223 <td><hr color="#b7db48" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#91a0cb" size=4></td></tr>
 224 <tr>
 225 <td class="midshadess">Query Sequence</td><td>&nbsp</td>
 226 <td style="color:009900;">V</td><td style="color:009900;">L</td><td style="color:ff6600;">T</td><td style="color:6600CC; background-color:#d2d0c1">C</td><td style="color:009900; background-color:#d2d0c1">V</td><td style="color:ff6600;">A</td><td style="color:0000cc;">Y</td><td style="color:ff6600;">P</td><td style="color:990000;">Q</td><td style="color:ff6600; background-color:#d2d0c1">S</td><td style="color:990000;">D</td><td align=center bgcolor=orange>.</td>
 227 <td style="color:009900;">V</td><td style="color:ff6600;">T</td><td style="color:009900;">I</td><td style="color:990000;">E</td><td style="color:ff6600;">T</td></tr>
 228 <tr consqual=1 style="display:none">
 229 <td class="darkshade">Query Conservation</td><td>&nbsp</td>
 230 <td><hr color=#737065 size=4></td><td><hr color=#737065 size=10></td><td>&nbsp</td><td><hr color=#737065 size=10></td><td>&nbsp</td><td><hr color=#737065 size=4></td><td>&nbsp</td><td><hr color=#737065 size=4></td><td>&nbsp</td><td><hr color=#737065 size=4></td><td><hr color=#737065 size=10></td><td align=center>.</td><td><hr color=#737065 size=4></td><td>&nbsp</td><td><hr color=#737065 size=10></td><td><hr color=#737065 size=4></td><td>&nbsp</td></tr>
 231 <tr consqual=1 style="display:none">
 232 <td class="midshadess">Alig confidence</td><td>&nbsp</td>
 233 <td><hr color="#f1d532" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#65b449" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#c93c38" size=4></td><td align=center>.</td><td><hr color="#f1d532" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#f1d532" size=4></td></tr>
 234 <tr consqual=1 style="display:none">
 235 <td class="darkshade">Template Conservation</td><td>&nbsp</td>
 236 <td><hr color=#d2d0c1 size=4></td><td><hr color=#d2d0c1 size=4></td><td>&nbsp</td><td><hr color=#d2d0c1 size=10></td><td>&nbsp</td><td><hr color=#d2d0c1 size=4></td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td><hr color=#d2d0c1 size=4></td><td><hr color=#d2d0c1 size=4></td><td><hr color=#d2d0c1 size=4></td></tr>
 237 <tr>
 238 <td class="midshadess">Template Sequence</td><td>&nbsp</td>
 239 <td style="color:009900;">I</td><td style="color:009900;">M</td><td style="color:009900;">V</td><td style="color:6600CC; background-color:#d2d0c1">C</td><td style="color:009900; background-color:#d2d0c1">V</td><td style="color:ff6600;">S</td><td style="color:990000;">R</td><td style="color:ff6600;">A</td><td style="color:990000;">K</td><td style="color:ff6600; background-color:#d2d0c1">S</td><td style="color:ff6600;">A</td><td style="color:990000;">E</td><td style="color:009900;">L</td><td style="color:009900;">V</td><td style="color:009900;">L</td><td style="color:990000;">D</td><td style="color:009900;">L</td></tr>
 240 <tr>
 241 <td nowrap class="darkshade">Template Known Secondary structure</td><td>&nbsp</td>
 242 <td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_a.png"></td><td>T</td><td>T</td><td>T</td><td><hr></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_a.png"></td><td>S</td><td>S</td><td>S</td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_a.png"></td><td><hr></td><td><hr></td></tr>
 243 <tr>
 244 <td class="midshadess">Template Predicted Secondary structure</td><td>&nbsp</td>
 245 <td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_a.png"></td><td><hr></td><td><hr></td><td><hr></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_a.png"></td><td><hr></td></tr>
 246 <tr confidence=1 style="display:none">
 247 <td class="darkshade">Template SS confidence</td><td>&nbsp</td>
 248 <td><hr color="#e68d3d" size=4></td><td><hr color="#e68d3d" size=4></td><td><hr color="#65b449" size=4></td><td><hr color="#65b449" size=4></td><td><hr color="#65b449" size=4></td><td><hr color="#91a0cb" size=4></td><td><hr color="#41ac82" size=4></td><td><hr color="#41ac82" size=4></td><td><hr color="#65b449" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#e68d3d" size=4></td><td><hr color="#3f3d81" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#b7db48" size=4></td><td><hr color="#c93c38" size=4></td></tr>
 249 <tr>
 250 <td style="width:100px;">&nbsp</td><td>&nbsp</td>
 251 <td class="index">305</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td class="index">310</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td>.</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td class="index">320</td><td class="index">.</td></tr>
 252 <tr><td>&nbsp</td></tr>
 253 </table>
 254 <table width=30% border=0><tr>
 255 <td style="width:7em;" class="darkshadelalig">Download:</td><td class="midshade"><a href="c2piaA_.20.alig.txt">Text version</a></td>
 256 <td class="midshade"><a href="../c2piaA_.20.fasta">FASTA pairwise alignment</a></td>
 257 <td class="midshade"><a href="../c2piaA_.20.pdb">3D Model in PDB format</a></td></tr></table>
 258 <div id="gif">
 259 <p><img src="../c2piaA_.20.big.png"></p>
 260 <p><a class="notIpad" href="JavaScript:expand(document.getElementById('jmol')); expand(document.getElementById('jmol-controls')); expand(document.getElementById('gif')); init_jmol();">View in JSmol</a></p>
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 266 <td><script>document.write(Jmol.jmolButton(jmolApplet0,"select all; cpk off; spacefill off; wireframe off; cartoon on; color group; set ambient 40; set specpower 40;","Colour Rainbow N->C"));</script></td>
 267 <td><a href="JavaScript:expand(document.getElementById('jmol')); expand(document.getElementById('jmol-controls')); expand(document.getElementById('gif'))">Close JSmol</a></td></tr>
 268 </table>
 269 </div>
 270 <a class="notIpad" href="http://firstglance.jmol.org/fg.htm?mol=http%3A//www.sbg.bio.ic.ac.uk/phyre2/phyre2_output/56da5616b4559c93/c2piaA_.20.pdb" target=_blank>Send structure to FirstGlance for more viewing options</a>
 271 <br><br><center><hr width=95%>
 272 <p>Phyre is for <font color=red>non-commercial use</font> only</p>
 273 <p>Commercial users please contact <a href="mailto:m.sternberg@imperial.ac.uk">Michael Sternberg</a></p>
 274 <table width=60% border=0>
 275 <tr align=center><td colspan=3><font size=-1><b>Please cite:</b> The Phyre2 web portal for protein modeling, prediction and analysis</font></td></tr>
 276
 277 <tr align=center><td colspan=3><font size=-1>Kelley LA <i>et al.</i> <i>Nature Protocols</i>
 278 10, 845-858 (2015)
 279       [<a href="http://www.nature.com/nprot/journal/v10/n6/full/nprot.2015.053.html">paper</a>]
 280       [<a href="http://www.nature.com/nprot/journal/v10/n6/ris/nprot.2015.053.ris">Citation
 281         link</a>]</font></td></tr>
 282 <tr><td colspan=3>&nbsp</td></tr>
 283 <tr><td align=center>
 284
 285 <table border=0>
 286
 287 <tr><td><font size=-2>&copy <a href="http://www.sbg.bio.ic.ac.uk">Structural Bioinformatics Group</a>, Imperial College, London</td></tr>
 288
 289 <tr><td><font size=-2><a
 290 href="http://www.sbg.bio.ic.ac.uk/people/kelley/kelley.html">Lawrence
 291 Kelley</a>, <a href="http://www.imperial.ac.uk/people/m.sternberg">Michael Sternberg</a></td><td>&nbsp</td></tr>
 292 <tr>
 293 <td><font size=-2><a href="http://www.sbg.bio.ic.ac.uk/phyre2/html/page.cgi?id=disclaimer">Disclaimer</a></font></td></tr>
 294 <tr>
 295 <td><font size=-2><a href="http://www.sbg.bio.ic.ac.uk/phyre2/html/page.cgi?id=terms_conditions">Terms and Conditions</a></font></td>
 296 </tr></table>
 297
 298 </td>
 299 <td align=center><a class="logo" href="http://www.elixir-uk.org"><img src="http://www.sbg.bio.ic.ac.uk/phyre2/html/images/Elixir_logo_small.png"></a></td>
 300 <td align=center>
 301 <table class="sbgic" bgcolor=white><tr><td><img src="http://www.sbg.bio.ic.ac.uk/phyre/html/sbg_small.gif">
 302 <img src="http://www.sbg.bio.ic.ac.uk/phyre/html/imperial_logo.gif">
 303 </td></tr>
 304 <tr><td><img src="http://www.sbg.bio.ic.ac.uk/phyre2/html/images/bbsrc.gif"><br>Phyre2 is part of <b><a href="http://genome3d.eu/">Genome3D</a></b></td></tr>
 305 </table></td></tr>
 306 </table>
 307 <br><br>
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