JAL-1894 update RELEASE for 2.9.0b1 release
[jalview.git] / examples / testdata / rna-alignment.xml
1 <?xml version="1.0"?>
2 <!--
3  * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
4  * Copyright (C) 2014 The Jalview Authors
5  * 
6  * This file is part of Jalview.
7  * 
8  * Jalview is free software: you can redistribute it and/or
9  * modify it under the terms of the GNU General Public License 
10  * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
11  *  
12  * Jalview is distributed in the hope that it will be useful, but 
13  * WITHOUT ANY WARRANTY; without even the implied warranty 
14  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
15  * PURPOSE.  See the GNU General Public License for more details.
16  * 
17  * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
18  * The Jalview Authors are detailed in the 'AUTHORS' file.
19 -->
20 <!DOCTYPE rnaml SYSTEM "rnaml.dtd">
21
22 <rnaml version="1.0">
23
24    <molecule id="1">
25       <sequence>
26          <numbering-system id="1" used-in-file="false">
27             <numbering-range>
28                <start>1</start>
29                <end>249</end>
30             </numbering-range>
31          </numbering-system>
32          <seq-data>
33             gaggaaaguc cggacUUCGC AGAAAAAGGU GCCAGUGAAA AACUGGGGGC CGUAAGGCUA
34             CGGAAAGUGU AACAGAAAAC AAACCGCUAA UUCUACCUAG GUAAGAUUAG ACAGGAUGAA
35             AAUGUCGAGC UUAUGGCUCG ACCUCUUUGU GGAAACACAA GGACGCUGCA AACCCCACCU
36             GAAGCAAGAA AGAGUUCGUU UCAGUUUUUC GCUCAGGAAC UCUUAGAGUC GCUCGAGGAU
37             UUUGGUGAC
38          </seq-data>
39       </sequence>
40       <structure>
41          <model id="?">
42             <str-annotation>
43                <base-pair comment="?">
44                   <base-id-5p>
45                      <base-id><position>15</position></base-id>
46                   </base-id-5p>
47                   <base-id-3p>
48                      <base-id><position>184</position></base-id>
49                   </base-id-3p>
50                </base-pair>
51                <base-pair comment="?">
52                   <base-id-5p>
53                      <base-id><position>16</position></base-id>
54                   </base-id-5p>
55                   <base-id-3p>
56                      <base-id><position>183</position></base-id>
57                   </base-id-3p>
58                </base-pair>
59                <base-pair comment="?">
60                   <base-id-5p>
61                      <base-id><position>17</position></base-id>
62                   </base-id-5p>
63                   <base-id-3p>
64                      <base-id><position>182</position></base-id>
65                   </base-id-3p>
66                </base-pair>
67                <base-pair comment="?">
68                   <base-id-5p>
69                      <base-id><position>18</position></base-id>
70                   </base-id-5p>
71                   <base-id-3p>
72                      <base-id><position>181</position></base-id>
73                   </base-id-3p>
74                </base-pair>
75                <base-pair comment="?">
76                   <base-id-5p>
77                      <base-id><position>22</position></base-id>
78                   </base-id-5p>
79                   <base-id-3p>
80                      <base-id><position>210</position></base-id>
81                   </base-id-3p>
82                </base-pair>
83                <base-pair comment="?">
84                   <base-id-5p>
85                      <base-id><position>23</position></base-id>
86                   </base-id-5p>
87                   <base-id-3p>
88                      <base-id><position>209</position></base-id>
89                   </base-id-3p>
90                </base-pair>
91                <base-pair comment="?">
92                   <base-id-5p>
93                      <base-id><position>24</position></base-id>
94                   </base-id-5p>
95                   <base-id-3p>
96                      <base-id><position>208</position></base-id>
97                   </base-id-3p>
98                </base-pair>
99                <base-pair comment="?">
100                   <base-id-5p>
101                      <base-id><position>25</position></base-id>
102                   </base-id-5p>
103                   <base-id-3p>
104                      <base-id><position>207</position></base-id>
105                   </base-id-3p>
106                </base-pair>
107                <base-pair comment="?">
108                   <base-id-5p>
109                      <base-id><position>27</position></base-id>
110                   </base-id-5p>
111                   <base-id-3p>
112                      <base-id><position>180</position></base-id>
113                   </base-id-3p>
114                </base-pair>
115                <base-pair comment="?">
116                   <base-id-5p>
117                      <base-id><position>28</position></base-id>
118                   </base-id-5p>
119                   <base-id-3p>
120                      <base-id><position>179</position></base-id>
121                   </base-id-3p>
122                </base-pair>
123                <base-pair comment="?">
124                   <base-id-5p>
125                      <base-id><position>29</position></base-id>
126                   </base-id-5p>
127                   <base-id-3p>
128                      <base-id><position>178</position></base-id>
129                   </base-id-3p>
130                </base-pair>
131                <base-pair comment="?">
132                   <base-id-5p>
133                      <base-id><position>30</position></base-id>
134                   </base-id-5p>
135                   <base-id-3p>
136                      <base-id><position>177</position></base-id>
137                   </base-id-3p>
138                </base-pair>
139                <base-pair comment="?">
140                   <base-id-5p>
141                      <base-id><position>31</position></base-id>
142                   </base-id-5p>
143                   <base-id-3p>
144                      <base-id><position>176</position></base-id>
145                   </base-id-3p>
146                </base-pair>
147                <base-pair comment="?">
148                   <base-id-5p>
149                      <base-id><position>32</position></base-id>
150                   </base-id-5p>
151                   <base-id-3p>
152                      <base-id><position>46</position></base-id>
153                   </base-id-3p>
154                </base-pair>
155                <base-pair comment="?">
156                   <base-id-5p>
157                      <base-id><position>33</position></base-id>
158                   </base-id-5p>
159                   <base-id-3p>
160                      <base-id><position>45</position></base-id>
161                   </base-id-3p>
162                </base-pair>
163                <base-pair comment="?">
164                   <base-id-5p>
165                      <base-id><position>34</position></base-id>
166                   </base-id-5p>
167                   <base-id-3p>
168                      <base-id><position>44</position></base-id>
169                   </base-id-3p>
170                </base-pair>
171                <base-pair comment="?">
172                   <base-id-5p>
173                      <base-id><position>35</position></base-id>
174                   </base-id-5p>
175                   <base-id-3p>
176                      <base-id><position>43</position></base-id>
177                   </base-id-3p>
178                </base-pair>
179                <base-pair comment="?">
180                   <base-id-5p>
181                      <base-id><position>36</position></base-id>
182                   </base-id-5p>
183                   <base-id-3p>
184                      <base-id><position>42</position></base-id>
185                   </base-id-3p>
186                </base-pair>
187                <base-pair comment="?">
188                   <base-id-5p>
189                      <base-id><position>47</position></base-id>
190                   </base-id-5p>
191                   <base-id-3p>
192                      <base-id><position>61</position></base-id>
193                   </base-id-3p>
194                </base-pair>
195                <base-pair comment="?">
196                   <base-id-5p>
197                      <base-id><position>48</position></base-id>
198                   </base-id-5p>
199                   <base-id-3p>
200                      <base-id><position>59</position></base-id>
201                   </base-id-3p>
202                </base-pair>
203                <base-pair comment="?">
204                   <base-id-5p>
205                      <base-id><position>49</position></base-id>
206                   </base-id-5p>
207                   <base-id-3p>
208                      <base-id><position>58</position></base-id>
209                   </base-id-3p>
210                </base-pair>
211                <base-pair comment="?">
212                   <base-id-5p>
213                      <base-id><position>50</position></base-id>
214                   </base-id-5p>
215                   <base-id-3p>
216                      <base-id><position>57</position></base-id>
217                   </base-id-3p>
218                </base-pair>
219                <base-pair comment="?">
220                   <base-id-5p>
221                      <base-id><position>51</position></base-id>
222                   </base-id-5p>
223                   <base-id-3p>
224                      <base-id><position>56</position></base-id>
225                   </base-id-3p>
226                </base-pair>
227                <base-pair comment="?">
228                   <base-id-5p>
229                      <base-id><position>62</position></base-id>
230                   </base-id-5p>
231                   <base-id-3p>
232                      <base-id><position>175</position></base-id>
233                   </base-id-3p>
234                </base-pair>
235                <base-pair comment="?">
236                   <base-id-5p>
237                      <base-id><position>63</position></base-id>
238                   </base-id-5p>
239                   <base-id-3p>
240                      <base-id><position>174</position></base-id>
241                   </base-id-3p>
242                </base-pair>
243                <base-pair comment="?">
244                   <base-id-5p>
245                      <base-id><position>67</position></base-id>
246                   </base-id-5p>
247                   <base-id-3p>
248                      <base-id><position>173</position></base-id>
249                   </base-id-3p>
250                </base-pair>
251                <base-pair comment="?">
252                   <base-id-5p>
253                      <base-id><position>68</position></base-id>
254                   </base-id-5p>
255                   <base-id-3p>
256                      <base-id><position>172</position></base-id>
257                   </base-id-3p>
258                </base-pair>
259                <base-pair comment="?">
260                   <base-id-5p>
261                      <base-id><position>69</position></base-id>
262                   </base-id-5p>
263                   <base-id-3p>
264                      <base-id><position>169</position></base-id>
265                   </base-id-3p>
266                </base-pair>
267                <base-pair comment="?">
268                   <base-id-5p>
269                      <base-id><position>70</position></base-id>
270                   </base-id-5p>
271                   <base-id-3p>
272                      <base-id><position>168</position></base-id>
273                   </base-id-3p>
274                </base-pair>
275                <base-pair comment="?">
276                   <base-id-5p>
277                      <base-id><position>71</position></base-id>
278                   </base-id-5p>
279                   <base-id-3p>
280                      <base-id><position>167</position></base-id>
281                   </base-id-3p>
282                </base-pair>
283                <base-pair comment="?">
284                   <base-id-5p>
285                      <base-id><position>84</position></base-id>
286                   </base-id-5p>
287                   <base-id-3p>
288                      <base-id><position>115</position></base-id>
289                   </base-id-3p>
290                </base-pair>
291                <base-pair comment="?">
292                   <base-id-5p>
293                      <base-id><position>85</position></base-id>
294                   </base-id-5p>
295                   <base-id-3p>
296                      <base-id><position>114</position></base-id>
297                   </base-id-3p>
298                </base-pair>
299                <base-pair comment="?">
300                   <base-id-5p>
301                      <base-id><position>86</position></base-id>
302                   </base-id-5p>
303                   <base-id-3p>
304                      <base-id><position>111</position></base-id>
305                   </base-id-3p>
306                </base-pair>
307                <base-pair comment="?">
308                   <base-id-5p>
309                      <base-id><position>87</position></base-id>
310                   </base-id-5p>
311                   <base-id-3p>
312                      <base-id><position>110</position></base-id>
313                   </base-id-3p>
314                </base-pair>
315                <base-pair comment="?">
316                   <base-id-5p>
317                      <base-id><position>88</position></base-id>
318                   </base-id-5p>
319                   <base-id-3p>
320                      <base-id><position>109</position></base-id>
321                   </base-id-3p>
322                </base-pair>
323                <base-pair comment="?">
324                   <base-id-5p>
325                      <base-id><position>89</position></base-id>
326                   </base-id-5p>
327                   <base-id-3p>
328                      <base-id><position>108</position></base-id>
329                   </base-id-3p>
330                </base-pair>
331                <base-pair comment="?">
332                   <base-id-5p>
333                      <base-id><position>90</position></base-id>
334                   </base-id-5p>
335                   <base-id-3p>
336                      <base-id><position>107</position></base-id>
337                   </base-id-3p>
338                </base-pair>
339                <base-pair comment="?">
340                   <base-id-5p>
341                      <base-id><position>91</position></base-id>
342                   </base-id-5p>
343                   <base-id-3p>
344                      <base-id><position>106</position></base-id>
345                   </base-id-3p>
346                </base-pair>
347                <base-pair comment="?">
348                   <base-id-5p>
349                      <base-id><position>92</position></base-id>
350                   </base-id-5p>
351                   <base-id-3p>
352                      <base-id><position>105</position></base-id>
353                   </base-id-3p>
354                </base-pair>
355                <base-pair comment="?">
356                   <base-id-5p>
357                      <base-id><position>93</position></base-id>
358                   </base-id-5p>
359                   <base-id-3p>
360                      <base-id><position>104</position></base-id>
361                   </base-id-3p>
362                </base-pair>
363                <base-pair comment="?">
364                   <base-id-5p>
365                      <base-id><position>94</position></base-id>
366                   </base-id-5p>
367                   <base-id-3p>
368                      <base-id><position>103</position></base-id>
369                   </base-id-3p>
370                </base-pair>
371                <base-pair comment="?">
372                   <base-id-5p>
373                      <base-id><position>95</position></base-id>
374                   </base-id-5p>
375                   <base-id-3p>
376                      <base-id><position>102</position></base-id>
377                   </base-id-3p>
378                </base-pair>
379                <base-pair comment="?">
380                   <base-id-5p>
381                      <base-id><position>96</position></base-id>
382                   </base-id-5p>
383                   <base-id-3p>
384                      <base-id><position>101</position></base-id>
385                   </base-id-3p>
386                </base-pair>
387                <base-pair comment="?">
388                   <base-id-5p>
389                      <base-id><position>124</position></base-id>
390                   </base-id-5p>
391                   <base-id-3p>
392                      <base-id><position>142</position></base-id>
393                   </base-id-3p>
394                </base-pair>
395                <base-pair comment="?">
396                   <base-id-5p>
397                      <base-id><position>125</position></base-id>
398                   </base-id-5p>
399                   <base-id-3p>
400                      <base-id><position>141</position></base-id>
401                   </base-id-3p>
402                </base-pair>
403                <base-pair comment="?">
404                   <base-id-5p>
405                      <base-id><position>126</position></base-id>
406                   </base-id-5p>
407                   <base-id-3p>
408                      <base-id><position>140</position></base-id>
409                   </base-id-3p>
410                </base-pair>
411                <base-pair comment="?">
412                   <base-id-5p>
413                      <base-id><position>127</position></base-id>
414                   </base-id-5p>
415                   <base-id-3p>
416                      <base-id><position>139</position></base-id>
417                   </base-id-3p>
418                </base-pair>
419                <base-pair comment="?">
420                   <base-id-5p>
421                      <base-id><position>128</position></base-id>
422                   </base-id-5p>
423                   <base-id-3p>
424                      <base-id><position>138</position></base-id>
425                   </base-id-3p>
426                </base-pair>
427                <base-pair comment="?">
428                   <base-id-5p>
429                      <base-id><position>129</position></base-id>
430                   </base-id-5p>
431                   <base-id-3p>
432                      <base-id><position>137</position></base-id>
433                   </base-id-3p>
434                </base-pair>
435                <base-pair comment="?">
436                   <base-id-5p>
437                      <base-id><position>143</position></base-id>
438                   </base-id-5p>
439                   <base-id-3p>
440                      <base-id><position>165</position></base-id>
441                   </base-id-3p>
442                </base-pair>
443                <base-pair comment="?">
444                   <base-id-5p>
445                      <base-id><position>144</position></base-id>
446                   </base-id-5p>
447                   <base-id-3p>
448                      <base-id><position>163</position></base-id>
449                   </base-id-3p>
450                </base-pair>
451                <base-pair comment="?">
452                   <base-id-5p>
453                      <base-id><position>145</position></base-id>
454                   </base-id-5p>
455                   <base-id-3p>
456                      <base-id><position>162</position></base-id>
457                   </base-id-3p>
458                </base-pair>
459                <base-pair comment="?">
460                   <base-id-5p>
461                      <base-id><position>146</position></base-id>
462                   </base-id-5p>
463                   <base-id-3p>
464                      <base-id><position>161</position></base-id>
465                   </base-id-3p>
466                </base-pair>
467                <base-pair comment="?">
468                   <base-id-5p>
469                      <base-id><position>147</position></base-id>
470                   </base-id-5p>
471                   <base-id-3p>
472                      <base-id><position>160</position></base-id>
473                   </base-id-3p>
474                </base-pair>
475                <base-pair comment="?">
476                   <base-id-5p>
477                      <base-id><position>148</position></base-id>
478                   </base-id-5p>
479                   <base-id-3p>
480                      <base-id><position>159</position></base-id>
481                   </base-id-3p>
482                </base-pair>
483                <base-pair comment="?">
484                   <base-id-5p>
485                      <base-id><position>149</position></base-id>
486                   </base-id-5p>
487                   <base-id-3p>
488                      <base-id><position>158</position></base-id>
489                   </base-id-3p>
490                </base-pair>
491                <base-pair comment="?">
492                   <base-id-5p>
493                      <base-id><position>150</position></base-id>
494                   </base-id-5p>
495                   <base-id-3p>
496                      <base-id><position>157</position></base-id>
497                   </base-id-3p>
498                </base-pair>
499                <base-pair comment="?">
500                   <base-id-5p>
501                      <base-id><position>151</position></base-id>
502                   </base-id-5p>
503                   <base-id-3p>
504                      <base-id><position>156</position></base-id>
505                   </base-id-3p>
506                </base-pair>
507                <base-pair comment="?">
508                   <base-id-5p>
509                      <base-id><position>188</position></base-id>
510                   </base-id-5p>
511                   <base-id-3p>
512                      <base-id><position>230</position></base-id>
513                   </base-id-3p>
514                </base-pair>
515                <base-pair comment="?">
516                   <base-id-5p>
517                      <base-id><position>189</position></base-id>
518                   </base-id-5p>
519                   <base-id-3p>
520                      <base-id><position>229</position></base-id>
521                   </base-id-3p>
522                </base-pair>
523                <base-pair comment="?">
524                   <base-id-5p>
525                      <base-id><position>190</position></base-id>
526                   </base-id-5p>
527                   <base-id-3p>
528                      <base-id><position>224</position></base-id>
529                   </base-id-3p>
530                </base-pair>
531                <base-pair comment="?">
532                   <base-id-5p>
533                      <base-id><position>191</position></base-id>
534                   </base-id-5p>
535                   <base-id-3p>
536                      <base-id><position>223</position></base-id>
537                   </base-id-3p>
538                </base-pair>
539                <base-pair comment="?">
540                   <base-id-5p>
541                      <base-id><position>192</position></base-id>
542                   </base-id-5p>
543                   <base-id-3p>
544                      <base-id><position>222</position></base-id>
545                   </base-id-3p>
546                </base-pair>
547                <base-pair comment="?">
548                   <base-id-5p>
549                      <base-id><position>193</position></base-id>
550                   </base-id-5p>
551                   <base-id-3p>
552                      <base-id><position>221</position></base-id>
553                   </base-id-3p>
554                </base-pair>
555                <base-pair comment="?">
556                   <base-id-5p>
557                      <base-id><position>194</position></base-id>
558                   </base-id-5p>
559                   <base-id-3p>
560                      <base-id><position>220</position></base-id>
561                   </base-id-3p>
562                </base-pair>
563                <base-pair comment="?">
564                   <base-id-5p>
565                      <base-id><position>195</position></base-id>
566                   </base-id-5p>
567                   <base-id-3p>
568                      <base-id><position>219</position></base-id>
569                   </base-id-3p>
570                </base-pair>
571                <base-pair comment="?">
572                   <base-id-5p>
573                      <base-id><position>196</position></base-id>
574                   </base-id-5p>
575                   <base-id-3p>
576                      <base-id><position>218</position></base-id>
577                   </base-id-3p>
578                </base-pair>
579                <base-pair comment="?">
580                   <base-id-5p>
581                      <base-id><position>197</position></base-id>
582                   </base-id-5p>
583                   <base-id-3p>
584                      <base-id><position>217</position></base-id>
585                   </base-id-3p>
586                </base-pair>
587                <base-pair comment="?">
588                   <base-id-5p>
589                      <base-id><position>203</position></base-id>
590                   </base-id-5p>
591                   <base-id-3p>
592                      <base-id><position>213</position></base-id>
593                   </base-id-3p>
594                </base-pair>
595                <base-pair comment="?">
596                   <base-id-5p>
597                      <base-id><position>204</position></base-id>
598                   </base-id-5p>
599                   <base-id-3p>
600                      <base-id><position>212</position></base-id>
601                   </base-id-3p>
602                </base-pair>
603                <base-pair comment="?">
604                   <base-id-5p>
605                      <base-id><position>205</position></base-id>
606                   </base-id-5p>
607                   <base-id-3p>
608                      <base-id><position>211</position></base-id>
609                   </base-id-3p>
610                </base-pair>
611                <base-pair comment="?">
612                   <base-id-5p>
613                      <base-id><position>244</position></base-id>
614                   </base-id-5p>
615                   <base-id-3p>
616                      <base-id><position>249</position></base-id>
617                   </base-id-3p>
618                </base-pair>
619             </str-annotation>
620          </model>
621       </structure>
622    </molecule>
623 <molecule id="2">
624       <sequence>
625          <numbering-system id="2" used-in-file="false">
626             <numbering-range>
627                <start>1</start>
628                <end>294</end>
629             </numbering-range>
630          </numbering-system>
631          <seq-data>
632             gaggaaaguc cgggCUCCAU AGGGCAGAGU GCCAGGUAAC GCCUGGGAGG CGCGAGCCUA
633             CGGAAAGUGC CACAGAAAAC AACCGCCUAA GCGCGCAAGC GCCGGUAAGG GUGAAAAGGU
634             GCGGUAAGAG CGCACCGCAC GGCUGGCAAC AGUUCGUGGC UAGGUAAACC CCACUCGGAG
635             CAAGACCAAA UAGGGAUCCA UUGGCGUGGC CCGCGCUGGA UCCGGGUAGG UUGCUAAAGG
636             CGGCCAGCGA UGGUCGUCGU AGAGGAAUGA CUGUCCUCGa cagaacccgg cuua
637          </seq-data>
638       </sequence>
639       <structure>
640          <model id="?">
641             <str-annotation>
642                <base-pair comment="?">
643                   <base-id-5p>
644                      <base-id><position>6</position></base-id>
645                   </base-id-5p>
646                   <base-id-3p>
647                      <base-id><position>293</position></base-id>
648                   </base-id-3p>
649                </base-pair>
650                <base-pair comment="?">
651                   <base-id-5p>
652                      <base-id><position>7</position></base-id>
653                   </base-id-5p>
654                   <base-id-3p>
655                      <base-id><position>292</position></base-id>
656                   </base-id-3p>
657                </base-pair>
658                <base-pair comment="?">
659                   <base-id-5p>
660                      <base-id><position>8</position></base-id>
661                   </base-id-5p>
662                   <base-id-3p>
663                      <base-id><position>291</position></base-id>
664                   </base-id-3p>
665                </base-pair>
666                <base-pair comment="?">
667                   <base-id-5p>
668                      <base-id><position>10</position></base-id>
669                   </base-id-5p>
670                   <base-id-3p>
671                      <base-id><position>290</position></base-id>
672                   </base-id-3p>
673                </base-pair>
674                <base-pair comment="?">
675                   <base-id-5p>
676                      <base-id><position>11</position></base-id>
677                   </base-id-5p>
678                   <base-id-3p>
679                      <base-id><position>289</position></base-id>
680                   </base-id-3p>
681                </base-pair>
682                <base-pair comment="?">
683                   <base-id-5p>
684                      <base-id><position>12</position></base-id>
685                   </base-id-5p>
686                   <base-id-3p>
687                      <base-id><position>288</position></base-id>
688                   </base-id-3p>
689                </base-pair>
690                <base-pair comment="?">
691                   <base-id-5p>
692                      <base-id><position>13</position></base-id>
693                   </base-id-5p>
694                   <base-id-3p>
695                      <base-id><position>287</position></base-id>
696                   </base-id-3p>
697                </base-pair>
698                <base-pair comment="?">
699                   <base-id-5p>
700                      <base-id><position>14</position></base-id>
701                   </base-id-5p>
702                   <base-id-3p>
703                      <base-id><position>286</position></base-id>
704                   </base-id-3p>
705                </base-pair>
706                <base-pair comment="?">
707                   <base-id-5p>
708                      <base-id><position>15</position></base-id>
709                   </base-id-5p>
710                   <base-id-3p>
711                      <base-id><position>180</position></base-id>
712                   </base-id-3p>
713                </base-pair>
714                <base-pair comment="?">
715                   <base-id-5p>
716                      <base-id><position>16</position></base-id>
717                   </base-id-5p>
718                   <base-id-3p>
719                      <base-id><position>179</position></base-id>
720                   </base-id-3p>
721                </base-pair>
722                <base-pair comment="?">
723                   <base-id-5p>
724                      <base-id><position>17</position></base-id>
725                   </base-id-5p>
726                   <base-id-3p>
727                      <base-id><position>178</position></base-id>
728                   </base-id-3p>
729                </base-pair>
730                <base-pair comment="?">
731                   <base-id-5p>
732                      <base-id><position>18</position></base-id>
733                   </base-id-5p>
734                   <base-id-3p>
735                      <base-id><position>177</position></base-id>
736                   </base-id-3p>
737                </base-pair>
738                <base-pair comment="?">
739                   <base-id-5p>
740                      <base-id><position>22</position></base-id>
741                   </base-id-5p>
742                   <base-id-3p>
743                      <base-id><position>212</position></base-id>
744                   </base-id-3p>
745                </base-pair>
746                <base-pair comment="?">
747                   <base-id-5p>
748                      <base-id><position>23</position></base-id>
749                   </base-id-5p>
750                   <base-id-3p>
751                      <base-id><position>211</position></base-id>
752                   </base-id-3p>
753                </base-pair>
754                <base-pair comment="?">
755                   <base-id-5p>
756                      <base-id><position>24</position></base-id>
757                   </base-id-5p>
758                   <base-id-3p>
759                      <base-id><position>210</position></base-id>
760                   </base-id-3p>
761                </base-pair>
762                <base-pair comment="?">
763                   <base-id-5p>
764                      <base-id><position>25</position></base-id>
765                   </base-id-5p>
766                   <base-id-3p>
767                      <base-id><position>209</position></base-id>
768                   </base-id-3p>
769                </base-pair>
770                <base-pair comment="?">
771                   <base-id-5p>
772                      <base-id><position>27</position></base-id>
773                   </base-id-5p>
774                   <base-id-3p>
775                      <base-id><position>176</position></base-id>
776                   </base-id-3p>
777                </base-pair>
778                <base-pair comment="?">
779                   <base-id-5p>
780                      <base-id><position>28</position></base-id>
781                   </base-id-5p>
782                   <base-id-3p>
783                      <base-id><position>175</position></base-id>
784                   </base-id-3p>
785                </base-pair>
786                <base-pair comment="?">
787                   <base-id-5p>
788                      <base-id><position>29</position></base-id>
789                   </base-id-5p>
790                   <base-id-3p>
791                      <base-id><position>174</position></base-id>
792                   </base-id-3p>
793                </base-pair>
794                <base-pair comment="?">
795                   <base-id-5p>
796                      <base-id><position>30</position></base-id>
797                   </base-id-5p>
798                   <base-id-3p>
799                      <base-id><position>173</position></base-id>
800                   </base-id-3p>
801                </base-pair>
802                <base-pair comment="?">
803                   <base-id-5p>
804                      <base-id><position>31</position></base-id>
805                   </base-id-5p>
806                   <base-id-3p>
807                      <base-id><position>172</position></base-id>
808                   </base-id-3p>
809                </base-pair>
810                <base-pair comment="?">
811                   <base-id-5p>
812                      <base-id><position>32</position></base-id>
813                   </base-id-5p>
814                   <base-id-3p>
815                      <base-id><position>46</position></base-id>
816                   </base-id-3p>
817                </base-pair>
818                <base-pair comment="?">
819                   <base-id-5p>
820                      <base-id><position>33</position></base-id>
821                   </base-id-5p>
822                   <base-id-3p>
823                      <base-id><position>45</position></base-id>
824                   </base-id-3p>
825                </base-pair>
826                <base-pair comment="?">
827                   <base-id-5p>
828                      <base-id><position>34</position></base-id>
829                   </base-id-5p>
830                   <base-id-3p>
831                      <base-id><position>44</position></base-id>
832                   </base-id-3p>
833                </base-pair>
834                <base-pair comment="?">
835                   <base-id-5p>
836                      <base-id><position>35</position></base-id>
837                   </base-id-5p>
838                   <base-id-3p>
839                      <base-id><position>43</position></base-id>
840                   </base-id-3p>
841                </base-pair>
842                <base-pair comment="?">
843                   <base-id-5p>
844                      <base-id><position>36</position></base-id>
845                   </base-id-5p>
846                   <base-id-3p>
847                      <base-id><position>42</position></base-id>
848                   </base-id-3p>
849                </base-pair>
850                <base-pair comment="?">
851                   <base-id-5p>
852                      <base-id><position>47</position></base-id>
853                   </base-id-5p>
854                   <base-id-3p>
855                      <base-id><position>61</position></base-id>
856                   </base-id-3p>
857                </base-pair>
858                <base-pair comment="?">
859                   <base-id-5p>
860                      <base-id><position>48</position></base-id>
861                   </base-id-5p>
862                   <base-id-3p>
863                      <base-id><position>59</position></base-id>
864                   </base-id-3p>
865                </base-pair>
866                <base-pair comment="?">
867                   <base-id-5p>
868                      <base-id><position>49</position></base-id>
869                   </base-id-5p>
870                   <base-id-3p>
871                      <base-id><position>58</position></base-id>
872                   </base-id-3p>
873                </base-pair>
874                <base-pair comment="?">
875                   <base-id-5p>
876                      <base-id><position>50</position></base-id>
877                   </base-id-5p>
878                   <base-id-3p>
879                      <base-id><position>57</position></base-id>
880                   </base-id-3p>
881                </base-pair>
882                <base-pair comment="?">
883                   <base-id-5p>
884                      <base-id><position>51</position></base-id>
885                   </base-id-5p>
886                   <base-id-3p>
887                      <base-id><position>56</position></base-id>
888                   </base-id-3p>
889                </base-pair>
890                <base-pair comment="?">
891                   <base-id-5p>
892                      <base-id><position>62</position></base-id>
893                   </base-id-5p>
894                   <base-id-3p>
895                      <base-id><position>171</position></base-id>
896                   </base-id-3p>
897                </base-pair>
898                <base-pair comment="?">
899                   <base-id-5p>
900                      <base-id><position>63</position></base-id>
901                   </base-id-5p>
902                   <base-id-3p>
903                      <base-id><position>170</position></base-id>
904                   </base-id-3p>
905                </base-pair>
906                <base-pair comment="?">
907                   <base-id-5p>
908                      <base-id><position>67</position></base-id>
909                   </base-id-5p>
910                   <base-id-3p>
911                      <base-id><position>169</position></base-id>
912                   </base-id-3p>
913                </base-pair>
914                <base-pair comment="?">
915                   <base-id-5p>
916                      <base-id><position>68</position></base-id>
917                   </base-id-5p>
918                   <base-id-3p>
919                      <base-id><position>168</position></base-id>
920                   </base-id-3p>
921                </base-pair>
922                <base-pair comment="?">
923                   <base-id-5p>
924                      <base-id><position>69</position></base-id>
925                   </base-id-5p>
926                   <base-id-3p>
927                      <base-id><position>165</position></base-id>
928                   </base-id-3p>
929                </base-pair>
930                <base-pair comment="?">
931                   <base-id-5p>
932                      <base-id><position>70</position></base-id>
933                   </base-id-5p>
934                   <base-id-3p>
935                      <base-id><position>164</position></base-id>
936                   </base-id-3p>
937                </base-pair>
938                <base-pair comment="?">
939                   <base-id-5p>
940                      <base-id><position>71</position></base-id>
941                   </base-id-5p>
942                   <base-id-3p>
943                      <base-id><position>163</position></base-id>
944                   </base-id-3p>
945                </base-pair>
946                <base-pair comment="?">
947                   <base-id-5p>
948                      <base-id><position>83</position></base-id>
949                   </base-id-5p>
950                   <base-id-3p>
951                      <base-id><position>110</position></base-id>
952                   </base-id-3p>
953                </base-pair>
954                <base-pair comment="?">
955                   <base-id-5p>
956                      <base-id><position>84</position></base-id>
957                   </base-id-5p>
958                   <base-id-3p>
959                      <base-id><position>109</position></base-id>
960                   </base-id-3p>
961                </base-pair>
962                <base-pair comment="?">
963                   <base-id-5p>
964                      <base-id><position>85</position></base-id>
965                   </base-id-5p>
966                   <base-id-3p>
967                      <base-id><position>106</position></base-id>
968                   </base-id-3p>
969                </base-pair>
970                <base-pair comment="?">
971                   <base-id-5p>
972                      <base-id><position>86</position></base-id>
973                   </base-id-5p>
974                   <base-id-3p>
975                      <base-id><position>105</position></base-id>
976                   </base-id-3p>
977                </base-pair>
978                <base-pair comment="?">
979                   <base-id-5p>
980                      <base-id><position>87</position></base-id>
981                   </base-id-5p>
982                   <base-id-3p>
983                      <base-id><position>104</position></base-id>
984                   </base-id-3p>
985                </base-pair>
986                <base-pair comment="?">
987                   <base-id-5p>
988                      <base-id><position>91</position></base-id>
989                   </base-id-5p>
990                   <base-id-3p>
991                      <base-id><position>102</position></base-id>
992                   </base-id-3p>
993                </base-pair>
994                <base-pair comment="?">
995                   <base-id-5p>
996                      <base-id><position>92</position></base-id>
997                   </base-id-5p>
998                   <base-id-3p>
999                      <base-id><position>101</position></base-id>
1000                   </base-id-3p>
1001                </base-pair>
1002                <base-pair comment="?">
1003                   <base-id-5p>
1004                      <base-id><position>93</position></base-id>
1005                   </base-id-5p>
1006                   <base-id-3p>
1007                      <base-id><position>100</position></base-id>
1008                   </base-id-3p>
1009                </base-pair>
1010                <base-pair comment="?">
1011                   <base-id-5p>
1012                      <base-id><position>94</position></base-id>
1013                   </base-id-5p>
1014                   <base-id-3p>
1015                      <base-id><position>99</position></base-id>
1016                   </base-id-3p>
1017                </base-pair>
1018                <base-pair comment="?">
1019                   <base-id-5p>
1020                      <base-id><position>118</position></base-id>
1021                   </base-id-5p>
1022                   <base-id-3p>
1023                      <base-id><position>136</position></base-id>
1024                   </base-id-3p>
1025                </base-pair>
1026                <base-pair comment="?">
1027                   <base-id-5p>
1028                      <base-id><position>119</position></base-id>
1029                   </base-id-5p>
1030                   <base-id-3p>
1031                      <base-id><position>135</position></base-id>
1032                   </base-id-3p>
1033                </base-pair>
1034                <base-pair comment="?">
1035                   <base-id-5p>
1036                      <base-id><position>120</position></base-id>
1037                   </base-id-5p>
1038                   <base-id-3p>
1039                      <base-id><position>134</position></base-id>
1040                   </base-id-3p>
1041                </base-pair>
1042                <base-pair comment="?">
1043                   <base-id-5p>
1044                      <base-id><position>121</position></base-id>
1045                   </base-id-5p>
1046                   <base-id-3p>
1047                      <base-id><position>133</position></base-id>
1048                   </base-id-3p>
1049                </base-pair>
1050                <base-pair comment="?">
1051                   <base-id-5p>
1052                      <base-id><position>122</position></base-id>
1053                   </base-id-5p>
1054                   <base-id-3p>
1055                      <base-id><position>132</position></base-id>
1056                   </base-id-3p>
1057                </base-pair>
1058                <base-pair comment="?">
1059                   <base-id-5p>
1060                      <base-id><position>123</position></base-id>
1061                   </base-id-5p>
1062                   <base-id-3p>
1063                      <base-id><position>131</position></base-id>
1064                   </base-id-3p>
1065                </base-pair>
1066                <base-pair comment="?">
1067                   <base-id-5p>
1068                      <base-id><position>137</position></base-id>
1069                   </base-id-5p>
1070                   <base-id-3p>
1071                      <base-id><position>160</position></base-id>
1072                   </base-id-3p>
1073                </base-pair>
1074                <base-pair comment="?">
1075                   <base-id-5p>
1076                      <base-id><position>138</position></base-id>
1077                   </base-id-5p>
1078                   <base-id-3p>
1079                      <base-id><position>158</position></base-id>
1080                   </base-id-3p>
1081                </base-pair>
1082                <base-pair comment="?">
1083                   <base-id-5p>
1084                      <base-id><position>139</position></base-id>
1085                   </base-id-5p>
1086                   <base-id-3p>
1087                      <base-id><position>157</position></base-id>
1088                   </base-id-3p>
1089                </base-pair>
1090                <base-pair comment="?">
1091                   <base-id-5p>
1092                      <base-id><position>140</position></base-id>
1093                   </base-id-5p>
1094                   <base-id-3p>
1095                      <base-id><position>156</position></base-id>
1096                   </base-id-3p>
1097                </base-pair>
1098                <base-pair comment="?">
1099                   <base-id-5p>
1100                      <base-id><position>141</position></base-id>
1101                   </base-id-5p>
1102                   <base-id-3p>
1103                      <base-id><position>155</position></base-id>
1104                   </base-id-3p>
1105                </base-pair>
1106                <base-pair comment="?">
1107                   <base-id-5p>
1108                      <base-id><position>142</position></base-id>
1109                   </base-id-5p>
1110                   <base-id-3p>
1111                      <base-id><position>154</position></base-id>
1112                   </base-id-3p>
1113                </base-pair>
1114                <base-pair comment="?">
1115                   <base-id-5p>
1116                      <base-id><position>143</position></base-id>
1117                   </base-id-5p>
1118                   <base-id-3p>
1119                      <base-id><position>152</position></base-id>
1120                   </base-id-3p>
1121                </base-pair>
1122                <base-pair comment="?">
1123                   <base-id-5p>
1124                      <base-id><position>144</position></base-id>
1125                   </base-id-5p>
1126                   <base-id-3p>
1127                      <base-id><position>151</position></base-id>
1128                   </base-id-3p>
1129                </base-pair>
1130                <base-pair comment="?">
1131                   <base-id-5p>
1132                      <base-id><position>145</position></base-id>
1133                   </base-id-5p>
1134                   <base-id-3p>
1135                      <base-id><position>150</position></base-id>
1136                   </base-id-3p>
1137                </base-pair>
1138                <base-pair comment="?">
1139                   <base-id-5p>
1140                      <base-id><position>184</position></base-id>
1141                   </base-id-5p>
1142                   <base-id-3p>
1143                      <base-id><position>232</position></base-id>
1144                   </base-id-3p>
1145                </base-pair>
1146                <base-pair comment="?">
1147                   <base-id-5p>
1148                      <base-id><position>185</position></base-id>
1149                   </base-id-5p>
1150                   <base-id-3p>
1151                      <base-id><position>231</position></base-id>
1152                   </base-id-3p>
1153                </base-pair>
1154                <base-pair comment="?">
1155                   <base-id-5p>
1156                      <base-id><position>186</position></base-id>
1157                   </base-id-5p>
1158                   <base-id-3p>
1159                      <base-id><position>230</position></base-id>
1160                   </base-id-3p>
1161                </base-pair>
1162                <base-pair comment="?">
1163                   <base-id-5p>
1164                      <base-id><position>187</position></base-id>
1165                   </base-id-5p>
1166                   <base-id-3p>
1167                      <base-id><position>229</position></base-id>
1168                   </base-id-3p>
1169                </base-pair>
1170                <base-pair comment="?">
1171                   <base-id-5p>
1172                      <base-id><position>194</position></base-id>
1173                   </base-id-5p>
1174                   <base-id-3p>
1175                      <base-id><position>223</position></base-id>
1176                   </base-id-3p>
1177                </base-pair>
1178                <base-pair comment="?">
1179                   <base-id-5p>
1180                      <base-id><position>195</position></base-id>
1181                   </base-id-5p>
1182                   <base-id-3p>
1183                      <base-id><position>222</position></base-id>
1184                   </base-id-3p>
1185                </base-pair>
1186                <base-pair comment="?">
1187                   <base-id-5p>
1188                      <base-id><position>196</position></base-id>
1189                   </base-id-5p>
1190                   <base-id-3p>
1191                      <base-id><position>221</position></base-id>
1192                   </base-id-3p>
1193                </base-pair>
1194                <base-pair comment="?">
1195                   <base-id-5p>
1196                      <base-id><position>197</position></base-id>
1197                   </base-id-5p>
1198                   <base-id-3p>
1199                      <base-id><position>220</position></base-id>
1200                   </base-id-3p>
1201                </base-pair>
1202                <base-pair comment="?">
1203                   <base-id-5p>
1204                      <base-id><position>198</position></base-id>
1205                   </base-id-5p>
1206                   <base-id-3p>
1207                      <base-id><position>219</position></base-id>
1208                   </base-id-3p>
1209                </base-pair>
1210                <base-pair comment="?">
1211                   <base-id-5p>
1212                      <base-id><position>199</position></base-id>
1213                   </base-id-5p>
1214                   <base-id-3p>
1215                      <base-id><position>218</position></base-id>
1216                   </base-id-3p>
1217                </base-pair>
1218                <base-pair comment="?">
1219                   <base-id-5p>
1220                      <base-id><position>203</position></base-id>
1221                   </base-id-5p>
1222                   <base-id-3p>
1223                      <base-id><position>217</position></base-id>
1224                   </base-id-3p>
1225                </base-pair>
1226                <base-pair comment="?">
1227                   <base-id-5p>
1228                      <base-id><position>204</position></base-id>
1229                   </base-id-5p>
1230                   <base-id-3p>
1231                      <base-id><position>216</position></base-id>
1232                   </base-id-3p>
1233                </base-pair>
1234                <base-pair comment="?">
1235                   <base-id-5p>
1236                      <base-id><position>205</position></base-id>
1237                   </base-id-5p>
1238                   <base-id-3p>
1239                      <base-id><position>215</position></base-id>
1240                   </base-id-3p>
1241                </base-pair>
1242                <base-pair comment="?">
1243                   <base-id-5p>
1244                      <base-id><position>206</position></base-id>
1245                   </base-id-5p>
1246                   <base-id-3p>
1247                      <base-id><position>214</position></base-id>
1248                   </base-id-3p>
1249                </base-pair>
1250                <base-pair comment="?">
1251                   <base-id-5p>
1252                      <base-id><position>207</position></base-id>
1253                   </base-id-5p>
1254                   <base-id-3p>
1255                      <base-id><position>213</position></base-id>
1256                   </base-id-3p>
1257                </base-pair>
1258                <base-pair comment="?">
1259                   <base-id-5p>
1260                      <base-id><position>239</position></base-id>
1261                   </base-id-5p>
1262                   <base-id-3p>
1263                      <base-id><position>258</position></base-id>
1264                   </base-id-3p>
1265                </base-pair>
1266                <base-pair comment="?">
1267                   <base-id-5p>
1268                      <base-id><position>240</position></base-id>
1269                   </base-id-5p>
1270                   <base-id-3p>
1271                      <base-id><position>257</position></base-id>
1272                   </base-id-3p>
1273                </base-pair>
1274                <base-pair comment="?">
1275                   <base-id-5p>
1276                      <base-id><position>241</position></base-id>
1277                   </base-id-5p>
1278                   <base-id-3p>
1279                      <base-id><position>256</position></base-id>
1280                   </base-id-3p>
1281                </base-pair>
1282                <base-pair comment="?">
1283                   <base-id-5p>
1284                      <base-id><position>242</position></base-id>
1285                   </base-id-5p>
1286                   <base-id-3p>
1287                      <base-id><position>255</position></base-id>
1288                   </base-id-3p>
1289                </base-pair>
1290                <base-pair comment="?">
1291                   <base-id-5p>
1292                      <base-id><position>243</position></base-id>
1293                   </base-id-5p>
1294                   <base-id-3p>
1295                      <base-id><position>254</position></base-id>
1296                   </base-id-3p>
1297                </base-pair>
1298                <base-pair comment="?">
1299                   <base-id-5p>
1300                      <base-id><position>244</position></base-id>
1301                   </base-id-5p>
1302                   <base-id-3p>
1303                      <base-id><position>253</position></base-id>
1304                   </base-id-3p>
1305                </base-pair>
1306                <base-pair comment="?">
1307                   <base-id-5p>
1308                      <base-id><position>245</position></base-id>
1309                   </base-id-5p>
1310                   <base-id-3p>
1311                      <base-id><position>252</position></base-id>
1312                   </base-id-3p>
1313                </base-pair>
1314                <base-pair comment="?">
1315                   <base-id-5p>
1316                      <base-id><position>246</position></base-id>
1317                   </base-id-5p>
1318                   <base-id-3p>
1319                      <base-id><position>251</position></base-id>
1320                   </base-id-3p>
1321                </base-pair>
1322             </str-annotation>
1323          </model>
1324       </structure>
1325    </molecule>
1326 </rnaml>