JAL-2754 Sequence.findFeatures(fromCol, toCol)
[jalview.git] / examples / testdata / test.aln
1 CLUSTAL
2
3 FER_CAPAA/1-97     -----------------------------------------------------------A
4 FER_CAPAN/1-144    MA------SVSATMISTSFMPRKPAVTSL-KPIPNVGE--ALFGLKS-A--NGGKVTCMA
5 FER1_SOLLC/1-144   MA------SISGTMISTSFLPRKPAVTSL-KAISNVGE--ALFGLKS-G--RNGRITCMA
6 Q93XJ9_SOLTU/1-144 MA------SISGTMISTSFLPRKPVVTSL-KAISNVGE--ALFGLKS-G--RNGRITCMA
7 FER1_PEA/1-149     MATT---PALYGTAVSTSFLRTQPMPMSV-TTTKAFSN--GFLGLKT-SLKRGDLAVAMA
8 Q7XA98_TRIPR/1-152 MATT---PALYGTAVSTSFMRRQPVPMSV-ATTTTTKAFPSGFGLKSVSTKRGDLAVAMA
9 FER1_MESCR/1-148   MAAT--TAALSGATMSTAFAPK--TPPMTAALPTNVGR--ALFGLKS-SASR-GRVTAMA
10 FER1_SPIOL/1-147   MAAT--TTTMMG--MATTFVPKPQAPPMMAALPSNTGR--SLFGLKT-GSR--GGRMTMA
11 FER3_RAPSA/1-96    -----------------------------------------------------------A
12 FER1_ARATH/1-148   MAST----ALSSAIVGTSFIRRSPAPISLRSLPSANTQ--SLFGLKS-GTARGGRVTAMA
13 FER_BRANA/1-96     -----------------------------------------------------------A
14 FER2_ARATH/1-148   MAST----ALSSAIVSTSFLRRQQTPISLRSLPFANTQ--SLFGLKS-STARGGRVTAMA
15 Q93Z60_ARATH/1-118 MAST----ALSSAIVSTSFLRRQQTPISLRSLPFANTQ--SLFGLKS-STARGGRVTAMA
16 FER1_MAIZE/1-150   MATVLGSPRAPAFFFSSSSLRAAPAPTAV--ALPAAKV--GIMGRSA-SSRR--RLRAQA
17 O80429_MAIZE/1-140 MAAT---------ALSMSILR---APPPCFSSPLRLRV--AVAKPLA-APMRRQLLRAQA
18 1A70|/1-97         -----------------------------------------------------------A
19
20 FER_CAPAA/1-97     SYKVKLITPDGPIEFDCPDDVYILDQAEEAGHDLPYSCRAGSCSSCAGKIAGGAVDQTDG
21 FER_CAPAN/1-144    SYKVKLITPDGPIEFDCPDNVYILDQAEEAGHDLPYSCRAGSCSSCAGKIAGGAVDQTDG
22 FER1_SOLLC/1-144   SYKVKLITPEGPIEFECPDDVYILDQAEEEGHDLPYSCRAGSCSSCAGKVTAGSVDQSDG
23 Q93XJ9_SOLTU/1-144 SYKVKLITPDGPIEFECPDDVYILDQAEEEGHDLPYSCRAGSCSSCAGKVTAGTVDQSDG
24 FER1_PEA/1-149     SYKVKLVTPDGTQEFECPSDVYILDHAEEVGIDLPYSCRAGSCSSCAGKVVGGEVDQSDG
25 Q7XA98_TRIPR/1-152 TYKVKLITPEGPQEFDCPDDVYILDHAEEVGIELPYSCRAGSCSSCAGKVVNGNVNQEDG
26 FER1_MESCR/1-148   AYKVTLVTPEGKQELECPDDVYILDAAEEAGIDLPYSCRAGSCSSCAGKVTSGSVNQDDG
27 FER1_SPIOL/1-147   AYKVTLVTPTGNVEFQCPDDVYILDAAEEEGIDLPYSCRAGSCSSCAGKLKTGSLNQDDQ
28 FER3_RAPSA/1-96    TYKVKFITPEGEQEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQ
29 FER1_ARATH/1-148   TYKVKFITPEGELEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQ
30 FER_BRANA/1-96     TYKVKFITPEGEQEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGFVDQSDE
31 FER2_ARATH/1-148   TYKVKFITPEGEQEVECEEDVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQ
32 Q93Z60_ARATH/1-118 TYKVKFITPEGEQEVECEEDVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQ
33 FER1_MAIZE/1-150   TYNVKLITPEGEVELQVPDDVYILDQAEEDGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQ
34 O80429_MAIZE/1-140 TYNVKLITPEGEVELQVPDDVYILDFAEEEGIDLPFSCRAGSCSSCAGKVVSGSVDQSDQ
35 1A70|/1-97         AYKVTLVTPTGNVEFQCPDDVYILDAAEEEGIDLPYSCRAGSCSSCAGKLKTGSLNQDDQ
36
37 FER_CAPAA/1-97     NFLDDDQLEEGWVLTCVAYPQSDVTIETHKEAELVG-
38 FER_CAPAN/1-144    NFLDDDQLEEGWVLTCVAYPQSDVTIETHKEAELVG-
39 FER1_SOLLC/1-144   NFLDEDQEAAGFVLTCVAYPKGDVTIETHKEEELTA-
40 Q93XJ9_SOLTU/1-144 KFLDDDQEAAGFVLTCVAYPKCDVTIETHKEEELTA-
41 FER1_PEA/1-149     SFLDDEQIEAGFVLTCVAYPTSDVVIETHKEEDLTA-
42 Q7XA98_TRIPR/1-152 SFLDDEQIEGGWVLTCVAFPTSDVTIETHKEEELTA-
43 FER1_MESCR/1-148   SFLDDDQIKEGWVLTCVAYPTGDVTIETHKEEELTA-
44 FER1_SPIOL/1-147   SFLDDDQIDEGWVLTCAAYPVSDVTIETHKEEELTA-
45 FER3_RAPSA/1-96    SFLDDDQIAEGFVLTCAAYPTSDVTIETHREEDMV--
46 FER1_ARATH/1-148   SFLDDEQIGEGFVLTCAAYPTSDVTIETHKEEDIV--
47 FER_BRANA/1-96     SFLDDDQIAEGFVLTCAAYPTSDVTIETHKEEELV--
48 FER2_ARATH/1-148   SFLDDEQMSEGYVLTCVAYPTSDVVIETHKEEAIM--
49 Q93Z60_ARATH/1-118 SFLDD--------------------------------
50 FER1_MAIZE/1-150   SYLDDGQIADGWVLTCHAYPTSDVVIETHKEEELTGA
51 O80429_MAIZE/1-140 SFLNDNQVADGWVLTCAAYPTSDVVIETHKEDDLL--
52 1A70|/1-97         SFLDDDQIDEGWVLTCAAYPVSDVTIETHKKEELTA
53