examples/testdata/test.aln

   1 CLUSTAL
   2
   3 FER_CAPAA/1-97     -----------------------------------------------------------A
   4 FER_CAPAN/1-144    MA------SVSATMISTSFMPRKPAVTSL-KPIPNVGE--ALFGLKS-A--NGGKVTCMA
   5 FER1_SOLLC/1-144   MA------SISGTMISTSFLPRKPAVTSL-KAISNVGE--ALFGLKS-G--RNGRITCMA
   6 Q93XJ9_SOLTU/1-144 MA------SISGTMISTSFLPRKPVVTSL-KAISNVGE--ALFGLKS-G--RNGRITCMA
   7 FER1_PEA/1-149     MATT---PALYGTAVSTSFLRTQPMPMSV-TTTKAFSN--GFLGLKT-SLKRGDLAVAMA
   8 Q7XA98_TRIPR/1-152 MATT---PALYGTAVSTSFMRRQPVPMSV-ATTTTTKAFPSGFGLKSVSTKRGDLAVAMA
   9 FER1_MESCR/1-148   MAAT--TAALSGATMSTAFAPK--TPPMTAALPTNVGR--ALFGLKS-SASR-GRVTAMA
  10 FER1_SPIOL/1-147   MAAT--TTTMMG--MATTFVPKPQAPPMMAALPSNTGR--SLFGLKT-GSR--GGRMTMA
  11 FER3_RAPSA/1-96    -----------------------------------------------------------A
  12 FER1_ARATH/1-148   MAST----ALSSAIVGTSFIRRSPAPISLRSLPSANTQ--SLFGLKS-GTARGGRVTAMA
  13 FER_BRANA/1-96     -----------------------------------------------------------A
  14 FER2_ARATH/1-148   MAST----ALSSAIVSTSFLRRQQTPISLRSLPFANTQ--SLFGLKS-STARGGRVTAMA
  15 Q93Z60_ARATH/1-118 MAST----ALSSAIVSTSFLRRQQTPISLRSLPFANTQ--SLFGLKS-STARGGRVTAMA
  16 FER1_MAIZE/1-150   MATVLGSPRAPAFFFSSSSLRAAPAPTAV--ALPAAKV--GIMGRSA-SSRR--RLRAQA
  17 O80429_MAIZE/1-140 MAAT---------ALSMSILR---APPPCFSSPLRLRV--AVAKPLA-APMRRQLLRAQA
  18 1A70|/1-97         -----------------------------------------------------------A
  19
  20 FER_CAPAA/1-97     SYKVKLITPDGPIEFDCPDDVYILDQAEEAGHDLPYSCRAGSCSSCAGKIAGGAVDQTDG
  21 FER_CAPAN/1-144    SYKVKLITPDGPIEFDCPDNVYILDQAEEAGHDLPYSCRAGSCSSCAGKIAGGAVDQTDG
  22 FER1_SOLLC/1-144   SYKVKLITPEGPIEFECPDDVYILDQAEEEGHDLPYSCRAGSCSSCAGKVTAGSVDQSDG
  23 Q93XJ9_SOLTU/1-144 SYKVKLITPDGPIEFECPDDVYILDQAEEEGHDLPYSCRAGSCSSCAGKVTAGTVDQSDG
  24 FER1_PEA/1-149     SYKVKLVTPDGTQEFECPSDVYILDHAEEVGIDLPYSCRAGSCSSCAGKVVGGEVDQSDG
  25 Q7XA98_TRIPR/1-152 TYKVKLITPEGPQEFDCPDDVYILDHAEEVGIELPYSCRAGSCSSCAGKVVNGNVNQEDG
  26 FER1_MESCR/1-148   AYKVTLVTPEGKQELECPDDVYILDAAEEAGIDLPYSCRAGSCSSCAGKVTSGSVNQDDG
  27 FER1_SPIOL/1-147   AYKVTLVTPTGNVEFQCPDDVYILDAAEEEGIDLPYSCRAGSCSSCAGKLKTGSLNQDDQ
  28 FER3_RAPSA/1-96    TYKVKFITPEGEQEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQ
  29 FER1_ARATH/1-148   TYKVKFITPEGELEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQ
  30 FER_BRANA/1-96     TYKVKFITPEGEQEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGFVDQSDE
  31 FER2_ARATH/1-148   TYKVKFITPEGEQEVECEEDVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQ
  32 Q93Z60_ARATH/1-118 TYKVKFITPEGEQEVECEEDVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQ
  33 FER1_MAIZE/1-150   TYNVKLITPEGEVELQVPDDVYILDQAEEDGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQ
  34 O80429_MAIZE/1-140 TYNVKLITPEGEVELQVPDDVYILDFAEEEGIDLPFSCRAGSCSSCAGKVVSGSVDQSDQ
  35 1A70|/1-97         AYKVTLVTPTGNVEFQCPDDVYILDAAEEEGIDLPYSCRAGSCSSCAGKLKTGSLNQDDQ
  36
  37 FER_CAPAA/1-97     NFLDDDQLEEGWVLTCVAYPQSDVTIETHKEAELVG-
  38 FER_CAPAN/1-144    NFLDDDQLEEGWVLTCVAYPQSDVTIETHKEAELVG-
  39 FER1_SOLLC/1-144   NFLDEDQEAAGFVLTCVAYPKGDVTIETHKEEELTA-
  40 Q93XJ9_SOLTU/1-144 KFLDDDQEAAGFVLTCVAYPKCDVTIETHKEEELTA-
  41 FER1_PEA/1-149     SFLDDEQIEAGFVLTCVAYPTSDVVIETHKEEDLTA-
  42 Q7XA98_TRIPR/1-152 SFLDDEQIEGGWVLTCVAFPTSDVTIETHKEEELTA-
  43 FER1_MESCR/1-148   SFLDDDQIKEGWVLTCVAYPTGDVTIETHKEEELTA-
  44 FER1_SPIOL/1-147   SFLDDDQIDEGWVLTCAAYPVSDVTIETHKEEELTA-
  45 FER3_RAPSA/1-96    SFLDDDQIAEGFVLTCAAYPTSDVTIETHREEDMV--
  46 FER1_ARATH/1-148   SFLDDEQIGEGFVLTCAAYPTSDVTIETHKEEDIV--
  47 FER_BRANA/1-96     SFLDDDQIAEGFVLTCAAYPTSDVTIETHKEEELV--
  48 FER2_ARATH/1-148   SFLDDEQMSEGYVLTCVAYPTSDVVIETHKEEAIM--
  49 Q93Z60_ARATH/1-118 SFLDD--------------------------------
  50 FER1_MAIZE/1-150   SYLDDGQIADGWVLTCHAYPTSDVVIETHKEEELTGA
  51 O80429_MAIZE/1-140 SFLNDNQVADGWVLTCAAYPTSDVVIETHKEDDLL--
  52 1A70|/1-97         SFLDDDQIDEGWVLTCAAYPVSDVTIETHKKEELTA
  53