examples/testdata/test.amsa

   1 >FER_CAPAA Ferredoxin
   2 -----------------------------------------------------------ASYKVKLITPDGP
   3 IEFDCPDDVYILDQAEEAGHDLPYSCRAGSCSSCAGKIAGGAVDQTDGNFLDDDQLEEGWVLTCVAYPQSDV
   4 TIETHKEAELVG-
   5 >FER_CAPAN Ferredoxin, chloroplast precursor
   6 MA------SVSATMISTSFMPRKPAVTSL-KPIPNVGE--ALFGLKS-A--NGGKVTCMASYKVKLITPDGP
   7 IEFDCPDNVYILDQAEEAGHDLPYSCRAGSCSSCAGKIAGGAVDQTDGNFLDDDQLEEGWVLTCVAYPQSDV
   8 TIETHKEAELVG-
   9 >FER1_SOLLC Ferredoxin-1, chloroplast precursor
  10 MA------SISGTMISTSFLPRKPAVTSL-KAISNVGE--ALFGLKS-G--RNGRITCMASYKVKLITPEGP
  11 IEFECPDDVYILDQAEEEGHDLPYSCRAGSCSSCAGKVTAGSVDQSDGNFLDEDQEAAGFVLTCVAYPKGDV
  12 TIETHKEEELTA-
  13 >Q93XJ9_SOLTU Ferredoxin I precursor
  14 MA------SISGTMISTSFLPRKPVVTSL-KAISNVGE--ALFGLKS-G--RNGRITCMASYKVKLITPDGP
  15 IEFECPDDVYILDQAEEEGHDLPYSCRAGSCSSCAGKVTAGTVDQSDGKFLDDDQEAAGFVLTCVAYPKCDV
  16 TIETHKEEELTA-
  17 >FER1_PEA Ferredoxin-1, chloroplast precursor
  18 MATT---PALYGTAVSTSFLRTQPMPMSV-TTTKAFSN--GFLGLKT-SLKRGDLAVAMASYKVKLVTPDGT
  19 QEFECPSDVYILDHAEEVGIDLPYSCRAGSCSSCAGKVVGGEVDQSDGSFLDDEQIEAGFVLTCVAYPTSDV
  20 VIETHKEEDLTA-
  21 >Q7XA98_TRIPR Ferredoxin I
  22 MATT---PALYGTAVSTSFMRRQPVPMSV-ATTTTTKAFPSGFGLKSVSTKRGDLAVAMATYKVKLITPEGP
  23 QEFDCPDDVYILDHAEEVGIELPYSCRAGSCSSCAGKVVNGNVNQEDGSFLDDEQIEGGWVLTCVAFPTSDV
  24 TIETHKEEELTA-
  25 >FER1_MESCR Ferredoxin-1, chloroplast precursor
  26 MAAT--TAALSGATMSTAFAPK--TPPMTAALPTNVGR--ALFGLKS-SASR-GRVTAMAAYKVTLVTPEGK
  27 QELECPDDVYILDAAEEAGIDLPYSCRAGSCSSCAGKVTSGSVNQDDGSFLDDDQIKEGWVLTCVAYPTGDV
  28 TIETHKEEELTA-
  29 >FER1_SPIOL Ferredoxin-1, chloroplast precursor
  30 MAAT--TTTMMG--MATTFVPKPQAPPMMAALPSNTGR--SLFGLKT-GSR--GGRMTMAAYKVTLVTPTGN
  31 VEFQCPDDVYILDAAEEEGIDLPYSCRAGSCSSCAGKLKTGSLNQDDQSFLDDDQIDEGWVLTCAAYPVSDV
  32 TIETHKEEELTA-
  33 >FER3_RAPSA Ferredoxin, leaf L-A
  34 -----------------------------------------------------------ATYKVKFITPEGE
  35 QEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDDQIAEGFVLTCAAYPTSDV
  36 TIETHREEDMV--
  37 >FER1_ARATH Ferredoxin-1, chloroplast precursor
  38 MAST----ALSSAIVGTSFIRRSPAPISLRSLPSANTQ--SLFGLKS-GTARGGRVTAMATYKVKFITPEGE
  39 LEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDEQIGEGFVLTCAAYPTSDV
  40 TIETHKEEDIV--
  41 >FER_BRANA Ferredoxin
  42 -----------------------------------------------------------ATYKVKFITPEGE
  43 QEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGFVDQSDESFLDDDQIAEGFVLTCAAYPTSDV
  44 TIETHKEEELV--
  45 >FER2_ARATH Ferredoxin-2, chloroplast precursor
  46 MAST----ALSSAIVSTSFLRRQQTPISLRSLPFANTQ--SLFGLKS-STARGGRVTAMATYKVKFITPEGE
  47 QEVECEEDVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQMSEGYVLTCVAYPTSDV
  48 VIETHKEEAIM--
  49 >Q93Z60_ARATH At1g10960/T19D16_12
  50 MAST----ALSSAIVSTSFLRRQQTPISLRSLPFANTQ--SLFGLKS-STARGGRVTAMATYKVKFITPEGE
  51 QEVECEEDVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDD-------------------
  52 -------------
  53 >FER1_MAIZE Ferredoxin-1, chloroplast precursor
  54 MATVLGSPRAPAFFFSSSSLRAAPAPTAV--ALPAAKV--GIMGRSA-SSRR--RLRAQATYNVKLITPEGE
  55 VELQVPDDVYILDQAEEDGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSYLDDGQIADGWVLTCHAYPTSDV
  56 VIETHKEEELTGA
  57 >O80429_MAIZE Ferredoxin
  58 MAAT---------ALSMSILR---APPPCFSSPLRLRV--AVAKPLA-APMRRQLLRAQATYNVKLITPEGE
  59 VELQVPDDVYILDFAEEEGIDLPFSCRAGSCSSCAGKVVSGSVDQSDQSFLNDNQVADGWVLTCAAYPTSDV
  60 VIETHKEDDLL--
  61 >1A70|
  62 -----------------------------------------------------------AAYKVTLVTPTGN
  63 VEFQCPDDVYILDAAEEEGIDLPYSCRAGSCSSCAGKLKTGSLNQDDQSFLDDDQIDEGWVLTCAAYPVSDV
  64 TIETHKKEELTA
  65 >#_Secondary Structure New description
  66                                                                1    2
  67     3          F    F  F 4     5          6 7   F     9
  68
  69 >#_Iron Sulphur Contacts New description
  70
  71                          F    F  F                             F
  72