examples/testdata/test.pileup

   1 PileUp
   2
   3    MSF: 157   Type: P    Check:  1935   ..
   4
   5
   6  Name: FER_CAPAA/1-97 oo  Len:  157  Check:  5701  Weight:  1.00
   7  Name: FER_CAPAN/1-144 oo  Len:  157  Check:  8823  Weight:  1.00
   8  Name: FER1_SOLLC/1-144 oo  Len:  157  Check:  41  Weight:  1.00
   9  Name: Q93XJ9_SOLTU/1-144 oo  Len:  157  Check:  466  Weight:  1.00
  10  Name: FER1_PEA/1-149 oo  Len:  157  Check:  5889  Weight:  1.00
  11  Name: Q7XA98_TRIPR/1-152 oo  Len:  157  Check:  1438  Weight:  1.00
  12  Name: FER1_MESCR/1-148 oo  Len:  157  Check:  3943  Weight:  1.00
  13  Name: FER1_SPIOL/1-147 oo  Len:  157  Check:  2139  Weight:  1.00
  14  Name: FER3_RAPSA/1-96 oo  Len:  157  Check:  7694  Weight:  1.00
  15  Name: FER1_ARATH/1-148 oo  Len:  157  Check:  6163  Weight:  1.00
  16  Name: FER_BRANA/1-96 oo  Len:  157  Check:  6628  Weight:  1.00
  17  Name: FER2_ARATH/1-148 oo  Len:  157  Check:  7866  Weight:  1.00
  18  Name: Q93Z60_ARATH/1-118 oo  Len:  157  Check:  3003  Weight:  1.00
  19  Name: FER1_MAIZE/1-150 oo  Len:  157  Check:  4097  Weight:  1.00
  20  Name: O80429_MAIZE/1-140 oo  Len:  157  Check:  1696  Weight:  1.00
  21  Name: 1A70|/1-97 oo  Len:  156  Check:  6348  Weight:  1.00
  22
  23
  24 //
  25
  26 FER_CAPAA/1-97 ---------- ---------- ---------- ---------- ----------
  27 FER_CAPAN/1-144 MA------SV SATMISTSFM PRKPAVTSL- KPIPNVGE-- ALFGLKS-A-
  28 FER1_SOLLC/1-144 MA------SI SGTMISTSFL PRKPAVTSL- KAISNVGE-- ALFGLKS-G-
  29 Q93XJ9_SOLTU/1-144 MA------SI SGTMISTSFL PRKPVVTSL- KAISNVGE-- ALFGLKS-G-
  30 FER1_PEA/1-149 MATT---PAL YGTAVSTSFL RTQPMPMSV- TTTKAFSN-- GFLGLKT-SL
  31 Q7XA98_TRIPR/1-152 MATT---PAL YGTAVSTSFM RRQPVPMSV- ATTTTTKAFP SGFGLKSVST
  32 FER1_MESCR/1-148 MAAT--TAAL SGATMSTAFA PK--TPPMTA ALPTNVGR-- ALFGLKS-SA
  33 FER1_SPIOL/1-147 MAAT--TTTM MG--MATTFV PKPQAPPMMA ALPSNTGR-- SLFGLKT-GS
  34 FER3_RAPSA/1-96 ---------- ---------- ---------- ---------- ----------
  35 FER1_ARATH/1-148 MAST----AL SSAIVGTSFI RRSPAPISLR SLPSANTQ-- SLFGLKS-GT
  36 FER_BRANA/1-96 ---------- ---------- ---------- ---------- ----------
  37 FER2_ARATH/1-148 MAST----AL SSAIVSTSFL RRQQTPISLR SLPFANTQ-- SLFGLKS-ST
  38 Q93Z60_ARATH/1-118 MAST----AL SSAIVSTSFL RRQQTPISLR SLPFANTQ-- SLFGLKS-ST
  39 FER1_MAIZE/1-150 MATVLGSPRA PAFFFSSSSL RAAPAPTAV- -ALPAAKV-- GIMGRSA-SS
  40 O80429_MAIZE/1-140 MAAT------ ---ALSMSIL R---APPPCF SSPLRLRV-- AVAKPLA-AP
  41 1A70|/1-97   ---------- ---------- ---------- ---------- ----------
  42
  43 FER_CAPAA/1-97 ---------A SYKVKLITPD GPIEFDCPDD VYILDQAEEA GHDLPYSCRA
  44 FER_CAPAN/1-144 -NGGKVTCMA SYKVKLITPD GPIEFDCPDN VYILDQAEEA GHDLPYSCRA
  45 FER1_SOLLC/1-144 -RNGRITCMA SYKVKLITPE GPIEFECPDD VYILDQAEEE GHDLPYSCRA
  46 Q93XJ9_SOLTU/1-144 -RNGRITCMA SYKVKLITPD GPIEFECPDD VYILDQAEEE GHDLPYSCRA
  47 FER1_PEA/1-149 KRGDLAVAMA SYKVKLVTPD GTQEFECPSD VYILDHAEEV GIDLPYSCRA
  48 Q7XA98_TRIPR/1-152 KRGDLAVAMA TYKVKLITPE GPQEFDCPDD VYILDHAEEV GIELPYSCRA
  49 FER1_MESCR/1-148 SR-GRVTAMA AYKVTLVTPE GKQELECPDD VYILDAAEEA GIDLPYSCRA
  50 FER1_SPIOL/1-147 R--GGRMTMA AYKVTLVTPT GNVEFQCPDD VYILDAAEEE GIDLPYSCRA
  51 FER3_RAPSA/1-96 ---------A TYKVKFITPE GEQEVECDDD VYVLDAAEEA GIDLPYSCRA
  52 FER1_ARATH/1-148 ARGGRVTAMA TYKVKFITPE GELEVECDDD VYVLDAAEEA GIDLPYSCRA
  53 FER_BRANA/1-96 ---------A TYKVKFITPE GEQEVECDDD VYVLDAAEEA GIDLPYSCRA
  54 FER2_ARATH/1-148 ARGGRVTAMA TYKVKFITPE GEQEVECEED VYVLDAAEEA GLDLPYSCRA
  55 Q93Z60_ARATH/1-118 ARGGRVTAMA TYKVKFITPE GEQEVECEED VYVLDAAEEA GLDLPYSCRA
  56 FER1_MAIZE/1-150 RR--RLRAQA TYNVKLITPE GEVELQVPDD VYILDQAEED GIDLPYSCRA
  57 O80429_MAIZE/1-140 MRRQLLRAQA TYNVKLITPE GEVELQVPDD VYILDFAEEE GIDLPFSCRA
  58 1A70|/1-97   ---------A AYKVTLVTPT GNVEFQCPDD VYILDAAEEE GIDLPYSCRA
  59
  60 FER_CAPAA/1-97 GSCSSCAGKI AGGAVDQTDG NFLDDDQLEE GWVLTCVAYP QSDVTIETHK
  61 FER_CAPAN/1-144 GSCSSCAGKI AGGAVDQTDG NFLDDDQLEE GWVLTCVAYP QSDVTIETHK
  62 FER1_SOLLC/1-144 GSCSSCAGKV TAGSVDQSDG NFLDEDQEAA GFVLTCVAYP KGDVTIETHK
  63 Q93XJ9_SOLTU/1-144 GSCSSCAGKV TAGTVDQSDG KFLDDDQEAA GFVLTCVAYP KCDVTIETHK
  64 FER1_PEA/1-149 GSCSSCAGKV VGGEVDQSDG SFLDDEQIEA GFVLTCVAYP TSDVVIETHK
  65 Q7XA98_TRIPR/1-152 GSCSSCAGKV VNGNVNQEDG SFLDDEQIEG GWVLTCVAFP TSDVTIETHK
  66 FER1_MESCR/1-148 GSCSSCAGKV TSGSVNQDDG SFLDDDQIKE GWVLTCVAYP TGDVTIETHK
  67 FER1_SPIOL/1-147 GSCSSCAGKL KTGSLNQDDQ SFLDDDQIDE GWVLTCAAYP VSDVTIETHK
  68 FER3_RAPSA/1-96 GSCSSCAGKV VSGSVDQSDQ SFLDDDQIAE GFVLTCAAYP TSDVTIETHR
  69 FER1_ARATH/1-148 GSCSSCAGKV VSGSVDQSDQ SFLDDEQIGE GFVLTCAAYP TSDVTIETHK
  70 FER_BRANA/1-96 GSCSSCAGKV VSGFVDQSDE SFLDDDQIAE GFVLTCAAYP TSDVTIETHK
  71 FER2_ARATH/1-148 GSCSSCAGKV VSGSIDQSDQ SFLDDEQMSE GYVLTCVAYP TSDVVIETHK
  72 Q93Z60_ARATH/1-118 GSCSSCAGKV VSGSIDQSDQ SFLDD----- ---------- ----------
  73 FER1_MAIZE/1-150 GSCSSCAGKV VSGSVDQSDQ SYLDDGQIAD GWVLTCHAYP TSDVVIETHK
  74 O80429_MAIZE/1-140 GSCSSCAGKV VSGSVDQSDQ SFLNDNQVAD GWVLTCAAYP TSDVVIETHK
  75 1A70|/1-97   GSCSSCAGKL KTGSLNQDDQ SFLDDDQIDE GWVLTCAAYP VSDVTIETHK
  76
  77 FER_CAPAA/1-97 EAELVG-
  78 FER_CAPAN/1-144 EAELVG-
  79 FER1_SOLLC/1-144 EEELTA-
  80 Q93XJ9_SOLTU/1-144 EEELTA-
  81 FER1_PEA/1-149 EEDLTA-
  82 Q7XA98_TRIPR/1-152 EEELTA-
  83 FER1_MESCR/1-148 EEELTA-
  84 FER1_SPIOL/1-147 EEELTA-
  85 FER3_RAPSA/1-96 EEDMV--
  86 FER1_ARATH/1-148 EEDIV--
  87 FER_BRANA/1-96 EEELV--
  88 FER2_ARATH/1-148 EEAIM--
  89 Q93Z60_ARATH/1-118 -------
  90 FER1_MAIZE/1-150 EEELTGA
  91 O80429_MAIZE/1-140 EDDLL--
  92 1A70|/1-97   KEELTA
  93