examples/testdata/test.rnaml

   1 <?xml version="1.0"?>
   2 <!DOCTYPE rnaml SYSTEM "rnaml.dtd">
   3
   4 <rnaml version="1.0">
   5
   6    <molecule id="1">
   7       <sequence>
   8          <numbering-system id="1" used-in-file="false">
   9             <numbering-range>
  10                <start>1</start>
  11                <end>89</end>
  12             </numbering-range>
  13          </numbering-system>
  14          <numbering-table length="89" comment="sequence number in pdb file">
  15             1    2    3    4    5    6    7    8    9   10
  16            11   12   13   14   15   16   17   18   19   20
  17            21   22   23   24   25   26   27   28   29   30
  18            31   32   33   34   35   36   37   38   39   40
  19            41   42   43   44   45   46   47   48   49   50
  20            51   52   53   54   55   56   57   58   59   60
  21            61   62   63   64   65   66   67   68   69   70
  22            71   72   73   74   75   76   77   78   79   80
  23            81   82   83   84   85   86   87   88   89
  24          </numbering-table>
  25          <seq-data>
  26             GGAGAGUAGA UGAUUCGCGU UAAGCGUGUG UGAAUGGGAU GUCGUCACAC AACGAAGCGA
  27             GAGCGCGGUG AAUCAUUGCA UCCGCUCCA
  28          </seq-data>
  29          <seq-annotation comment="?">
  30             <segment>
  31                <seg-name>LOOP1</seg-name>
  32                <base-id-5p><base-id><position>60</position></base-id></base-id-5p>
  33                <base-id-3p><base-id><position>61</position></base-id></base-id-3p>
  34             </segment>
  35          </seq-annotation>
  36       </sequence>
  37       <structure>
  38          <model id="?">
  39             <model-info>
  40                <method>Crystallography ?</method>
  41                <resolution>? Angstroms</resolution>
  42             </model-info>
  43             <base>
  44                <position>1</position>
  45                <base-type>G</base-type>
  46                <atom serial="1">
  47                   <atom-type> P  </atom-type>
  48                      <coordinates>39.406 -40.727 -8.772</coordinates>
  49                </atom>
  50                <atom serial="9">
  51                   <atom-type> O3'</atom-type>
  52                      <coordinates>35.728 -40.286 -12.682</coordinates>
  53                </atom>
  54             </base>
  55             <base>
  56                <position>2</position>
  57                <base-type>G</base-type>
  58                <atom serial="24">
  59                   <atom-type> P  </atom-type>
  60                      <coordinates>34.946 -38.900 -12.475</coordinates>
  61                </atom>
  62                <atom serial="32">
  63                   <atom-type> O3'</atom-type>
  64                      <coordinates>30.080 -38.122 -13.566</coordinates>
  65                </atom>
  66             </base>
  67             <base>
  68                <position>3</position>
  69                <base-type>A</base-type>
  70                <atom serial="47">
  71                   <atom-type> P  </atom-type>
  72                      <coordinates>29.830 -36.592 -13.144</coordinates>
  73                </atom>
  74                <atom serial="55">
  75                   <atom-type> O3'</atom-type>
  76                      <coordinates>25.299 -34.832 -11.157</coordinates>
  77                </atom>
  78             </base>
  79             <base>
  80                <position>4</position>
  81                <base-type>G</base-type>
  82                <atom serial="69">
  83                   <atom-type> P  </atom-type>
  84                      <coordinates>25.525 -33.291 -10.748</coordinates>
  85                </atom>
  86                <atom serial="77">
  87                   <atom-type> O3'</atom-type>
  88                      <coordinates>22.725 -31.357 -6.447</coordinates>
  89                </atom>
  90             </base>
  91             <base>
  92                <position>5</position>
  93                <base-type>A</base-type>
  94                <atom serial="92">
  95                   <atom-type> P  </atom-type>
  96                      <coordinates>23.004 -29.821 -6.080</coordinates>
  97                </atom>
  98                <atom serial="100">
  99                   <atom-type> O3'</atom-type>
 100                      <coordinates>21.811 -28.069 -1.298</coordinates>
 101                </atom>
 102             </base>
 103             <base>
 104                <position>6</position>
 105                <base-type>G</base-type>
 106                <atom serial="114">
 107                   <atom-type> P  </atom-type>
 108                      <coordinates>21.792 -26.530 -1.767</coordinates>
 109                </atom>
 110                <atom serial="122">
 111                   <atom-type> O3'</atom-type>
 112                      <coordinates>24.489 -23.234 1.411</coordinates>
 113                </atom>
 114             </base>
 115             <base>
 116                <position>7</position>
 117                <base-type>U</base-type>
 118                <atom serial="137">
 119                   <atom-type> P  </atom-type>
 120                      <coordinates>24.494 -21.833 0.618</coordinates>
 121                </atom>
 122                <atom serial="145">
 123                   <atom-type> O3'</atom-type>
 124                      <coordinates>26.796 -17.886 2.729</coordinates>
 125                </atom>
 126             </base>
 127             <base>
 128                <position>8</position>
 129                <base-type>A</base-type>
 130                <atom serial="157">
 131                   <atom-type> P  </atom-type>
 132                      <coordinates>25.940 -16.593 2.288</coordinates>
 133                </atom>
 134                <atom serial="165">
 135                   <atom-type> O3'</atom-type>
 136                      <coordinates>27.995 -11.947 1.918</coordinates>
 137                </atom>
 138             </base>
 139             <base>
 140                <position>9</position>
 141                <base-type>G</base-type>
 142                <atom serial="179">
 143                   <atom-type> P  </atom-type>
 144                      <coordinates>26.631 -11.127 1.714</coordinates>
 145                </atom>
 146                <atom serial="187">
 147                   <atom-type> O3'</atom-type>
 148                      <coordinates>25.187 -8.816 -3.450</coordinates>
 149                </atom>
 150             </base>
 151             <base>
 152                <position>10</position>
 153                <base-type>A</base-type>
 154                <atom serial="202">
 155                   <atom-type> P  </atom-type>
 156                      <coordinates>23.765 -8.232 -3.892</coordinates>
 157                </atom>
 158                <atom serial="210">
 159                   <atom-type> O3'</atom-type>
 160                      <coordinates>22.114 -8.019 -8.607</coordinates>
 161                </atom>
 162             </base>
 163             <base>
 164                <position>11</position>
 165                <base-type>U</base-type>
 166                <atom serial="224">
 167                   <atom-type> P  </atom-type>
 168                      <coordinates>20.793 -7.127 -8.411</coordinates>
 169                </atom>
 170                <atom serial="232">
 171                   <atom-type> O3'</atom-type>
 172                      <coordinates>16.589 -7.608 -11.167</coordinates>
 173                </atom>
 174             </base>
 175             <base>
 176                <position>12</position>
 177                <base-type>G</base-type>
 178                <atom serial="244">
 179                   <atom-type> P  </atom-type>
 180                      <coordinates>15.563 -6.541 -10.537</coordinates>
 181                </atom>
 182                <atom serial="252">
 183                   <atom-type> O3'</atom-type>
 184                      <coordinates>10.446 -7.534 -10.495</coordinates>
 185                </atom>
 186             </base>
 187             <base>
 188                <position>13</position>
 189                <base-type>A</base-type>
 190                <atom serial="267">
 191                   <atom-type> P  </atom-type>
 192                      <coordinates>9.719 -6.369 -9.662</coordinates>
 193                </atom>
 194                <atom serial="275">
 195                   <atom-type> O3'</atom-type>
 196                      <coordinates>5.301 -7.413 -7.169</coordinates>
 197                </atom>
 198             </base>
 199             <base>
 200                <position>14</position>
 201                <base-type>U</base-type>
 202                <atom serial="289">
 203                   <atom-type> P  </atom-type>
 204                      <coordinates>4.913 -6.043 -6.428</coordinates>
 205                </atom>
 206                <atom serial="297">
 207                   <atom-type> O3'</atom-type>
 208                      <coordinates>2.471 -6.216 -1.841</coordinates>
 209                </atom>
 210             </base>
 211             <base>
 212                <position>15</position>
 213                <base-type>U</base-type>
 214                <atom serial="309">
 215                   <atom-type> P  </atom-type>
 216                      <coordinates>2.306 -4.695 -1.355</coordinates>
 217                </atom>
 218                <atom serial="317">
 219                   <atom-type> O3'</atom-type>
 220                      <coordinates>2.523 -3.519 3.678</coordinates>
 221                </atom>
 222             </base>
 223             <base>
 224                <position>16</position>
 225                <base-type>C</base-type>
 226                <atom serial="329">
 227                   <atom-type> P  </atom-type>
 228                      <coordinates>2.410 -1.916 3.716</coordinates>
 229                </atom>
 230                <atom serial="337">
 231                   <atom-type> O3'</atom-type>
 232                      <coordinates>4.861 0.478 7.750</coordinates>
 233                </atom>
 234             </base>
 235             <base>
 236                <position>17</position>
 237                <base-type>G</base-type>
 238                <atom serial="349">
 239                   <atom-type> P  </atom-type>
 240                      <coordinates>5.097 2.068 7.705</coordinates>
 241                </atom>
 242                <atom serial="357">
 243                   <atom-type> O3'</atom-type>
 244                      <coordinates>9.837 5.342 8.056</coordinates>
 245                </atom>
 246             </base>
 247             <base>
 248                <position>18</position>
 249                <base-type>C</base-type>
 250                <atom serial="372">
 251                   <atom-type> P  </atom-type>
 252                      <coordinates>9.957 6.906 7.713</coordinates>
 253                </atom>
 254                <atom serial="380">
 255                   <atom-type> O3'</atom-type>
 256                      <coordinates>14.285 9.278 6.633</coordinates>
 257                </atom>
 258             </base>
 259             <base>
 260                <position>19</position>
 261                <base-type>G</base-type>
 262                <atom serial="392">
 263                   <atom-type> P  </atom-type>
 264                      <coordinates>13.701 10.760 6.394</coordinates>
 265                </atom>
 266                <atom serial="400">
 267                   <atom-type> O3'</atom-type>
 268                      <coordinates>16.027 13.756 2.831</coordinates>
 269                </atom>
 270             </base>
 271             <base>
 272                <position>20</position>
 273                <base-type>U</base-type>
 274                <atom serial="415">
 275                   <atom-type> P  </atom-type>
 276                      <coordinates>15.167 15.091 3.070</coordinates>
 277                </atom>
 278                <atom serial="423">
 279                   <atom-type> O3'</atom-type>
 280                      <coordinates>13.625 17.842 -0.910</coordinates>
 281                </atom>
 282             </base>
 283             <base>
 284                <position>21</position>
 285                <base-type>U</base-type>
 286                <atom serial="435">
 287                   <atom-type> P  </atom-type>
 288                      <coordinates>12.758 18.952 -0.136</coordinates>
 289                </atom>
 290                <atom serial="443">
 291                   <atom-type> O3'</atom-type>
 292                      <coordinates>18.055 19.867 1.942</coordinates>
 293                </atom>
 294             </base>
 295             <base>
 296                <position>22</position>
 297                <base-type>A</base-type>
 298                <atom serial="455">
 299                   <atom-type> P  </atom-type>
 300                      <coordinates>19.169 19.634 0.806</coordinates>
 301                </atom>
 302                <atom serial="463">
 303                   <atom-type> O3'</atom-type>
 304                      <coordinates>21.578 14.723 -0.062</coordinates>
 305                </atom>
 306             </base>
 307             <base>
 308                <position>23</position>
 309                <base-type>A</base-type>
 310                <atom serial="477">
 311                   <atom-type> P  </atom-type>
 312                      <coordinates>23.185 14.817 -0.069</coordinates>
 313                </atom>
 314                <atom serial="485">
 315                   <atom-type> O3'</atom-type>
 316                      <coordinates>24.197 10.234 2.787</coordinates>
 317                </atom>
 318             </base>
 319             <base>
 320                <position>24</position>
 321                <base-type>G</base-type>
 322                <atom serial="499">
 323                   <atom-type> P  </atom-type>
 324                      <coordinates>25.187 9.332 1.904</coordinates>
 325                </atom>
 326                <atom serial="507">
 327                   <atom-type> O3'</atom-type>
 328                      <coordinates>23.533 4.428 0.543</coordinates>
 329                </atom>
 330             </base>
 331             <base>
 332                <position>25</position>
 333                <base-type>C</base-type>
 334                <atom serial="522">
 335                   <atom-type> P  </atom-type>
 336                      <coordinates>24.698 3.762 -0.344</coordinates>
 337                </atom>
 338                <atom serial="530">
 339                   <atom-type> O3'</atom-type>
 340                      <coordinates>23.832 1.164 -4.830</coordinates>
 341                </atom>
 342             </base>
 343             <base>
 344                <position>26</position>
 345                <base-type>G</base-type>
 346                <atom serial="542">
 347                   <atom-type> P  </atom-type>
 348                      <coordinates>25.358 0.687 -5.012</coordinates>
 349                </atom>
 350                <atom serial="550">
 351                   <atom-type> O3'</atom-type>
 352                      <coordinates>27.639 1.163 -9.624</coordinates>
 353                </atom>
 354             </base>
 355             <base>
 356                <position>27</position>
 357                <base-type>U</base-type>
 358                <atom serial="565">
 359                   <atom-type> P  </atom-type>
 360                      <coordinates>29.215 0.976 -9.386</coordinates>
 361                </atom>
 362                <atom serial="573">
 363                   <atom-type> O3'</atom-type>
 364                      <coordinates>32.967 2.977 -11.808</coordinates>
 365                </atom>
 366             </base>
 367             <base>
 368                <position>28</position>
 369                <base-type>G</base-type>
 370                <atom serial="585">
 371                   <atom-type> P  </atom-type>
 372                      <coordinates>34.192 2.205 -11.110</coordinates>
 373                </atom>
 374                <atom serial="593">
 375                   <atom-type> O3'</atom-type>
 376                      <coordinates>38.926 3.986 -11.102</coordinates>
 377                </atom>
 378             </base>
 379             <base>
 380                <position>29</position>
 381                <base-type>U</base-type>
 382                <atom serial="608">
 383                   <atom-type> P  </atom-type>
 384                      <coordinates>39.673 2.760 -10.388</coordinates>
 385                </atom>
 386                <atom serial="616">
 387                   <atom-type> O3'</atom-type>
 388                      <coordinates>43.897 3.593 -7.402</coordinates>
 389                </atom>
 390             </base>
 391             <base>
 392                <position>30</position>
 393                <base-type>G</base-type>
 394                <atom serial="628">
 395                   <atom-type> P  </atom-type>
 396                      <coordinates>44.247 2.191 -6.693</coordinates>
 397                </atom>
 398                <atom serial="636">
 399                   <atom-type> O3'</atom-type>
 400                      <coordinates>46.005 2.102 -1.916</coordinates>
 401                </atom>
 402             </base>
 403             <base>
 404                <position>31</position>
 405                <base-type>U</base-type>
 406                <atom serial="651">
 407                   <atom-type> P  </atom-type>
 408                      <coordinates>46.082 0.594 -1.358</coordinates>
 409                </atom>
 410                <atom serial="659">
 411                   <atom-type> O3'</atom-type>
 412                      <coordinates>46.014 -0.378 3.660</coordinates>
 413                </atom>
 414             </base>
 415             <base>
 416                <position>32</position>
 417                <base-type>G</base-type>
 418                <atom serial="671">
 419                   <atom-type> P  </atom-type>
 420                      <coordinates>46.093 -1.940 4.026</coordinates>
 421                </atom>
 422                <atom serial="679">
 423                   <atom-type> O3'</atom-type>
 424                      <coordinates>42.541 -5.286 7.182</coordinates>
 425                </atom>
 426             </base>
 427             <base>
 428                <position>33</position>
 429                <base-type>A</base-type>
 430                <atom serial="694">
 431                   <atom-type> P  </atom-type>
 432                      <coordinates>42.384 -6.877 7.063</coordinates>
 433                </atom>
 434                <atom serial="702">
 435                   <atom-type> O3'</atom-type>
 436                      <coordinates>38.307 -9.190 8.881</coordinates>
 437                </atom>
 438             </base>
 439             <base>
 440                <position>34</position>
 441                <base-type>A</base-type>
 442                <atom serial="716">
 443                   <atom-type> P  </atom-type>
 444                      <coordinates>38.548 -10.772 8.689</coordinates>
 445                </atom>
 446                <atom serial="724">
 447                   <atom-type> O3'</atom-type>
 448                      <coordinates>34.569 -13.953 8.211</coordinates>
 449                </atom>
 450             </base>
 451             <base>
 452                <position>35</position>
 453                <base-type>U</base-type>
 454                <atom serial="738">
 455                   <atom-type> P  </atom-type>
 456                      <coordinates>34.833 -15.458 7.714</coordinates>
 457                </atom>
 458                <atom serial="746">
 459                   <atom-type> O3'</atom-type>
 460                      <coordinates>32.606 -18.340 3.220</coordinates>
 461                </atom>
 462             </base>
 463             <base>
 464                <position>36</position>
 465                <base-type>G</base-type>
 466                <atom serial="758">
 467                   <atom-type> P  </atom-type>
 468                      <coordinates>33.272 -19.727 3.692</coordinates>
 469                </atom>
 470                <atom serial="766">
 471                   <atom-type> O3'</atom-type>
 472                      <coordinates>29.146 -23.892 4.012</coordinates>
 473                </atom>
 474             </base>
 475             <base>
 476                <position>37</position>
 477                <base-type>G</base-type>
 478                <atom serial="781">
 479                   <atom-type> P  </atom-type>
 480                      <coordinates>29.023 -23.774 5.611</coordinates>
 481                </atom>
 482                <atom serial="789">
 483                   <atom-type> O3'</atom-type>
 484                      <coordinates>32.904 -25.203 8.677</coordinates>
 485                </atom>
 486             </base>
 487             <base>
 488                <position>38</position>
 489                <base-type>G</base-type>
 490                <atom serial="804">
 491                   <atom-type> P  </atom-type>
 492                      <coordinates>34.031 -24.091 8.410</coordinates>
 493                </atom>
 494                <atom serial="812">
 495                   <atom-type> O3'</atom-type>
 496                      <coordinates>38.938 -24.200 8.769</coordinates>
 497                </atom>
 498             </base>
 499             <base>
 500                <position>39</position>
 501                <base-type>A</base-type>
 502                <atom serial="827">
 503                   <atom-type> P  </atom-type>
 504                      <coordinates>39.341 -22.721 8.285</coordinates>
 505                </atom>
 506                <atom serial="835">
 507                   <atom-type> O3'</atom-type>
 508                      <coordinates>43.751 -21.471 6.096</coordinates>
 509                </atom>
 510             </base>
 511             <base>
 512                <position>40</position>
 513                <base-type>U</base-type>
 514                <atom serial="849">
 515                   <atom-type> P  </atom-type>
 516                      <coordinates>43.479 -19.903 5.856</coordinates>
 517                </atom>
 518                <atom serial="857">
 519                   <atom-type> O3'</atom-type>
 520                      <coordinates>45.395 -17.759 1.488</coordinates>
 521                </atom>
 522             </base>
 523             <base>
 524                <position>41</position>
 525                <base-type>G</base-type>
 526                <atom serial="869">
 527                   <atom-type> P  </atom-type>
 528                      <coordinates>44.930 -16.222 1.586</coordinates>
 529                </atom>
 530                <atom serial="877">
 531                   <atom-type> O3'</atom-type>
 532                      <coordinates>43.506 -13.581 -2.651</coordinates>
 533                </atom>
 534             </base>
 535             <base>
 536                <position>42</position>
 537                <base-type>U</base-type>
 538                <atom serial="892">
 539                   <atom-type> P  </atom-type>
 540                      <coordinates>42.831 -12.121 -2.591</coordinates>
 541                </atom>
 542                <atom serial="900">
 543                   <atom-type> O3'</atom-type>
 544                      <coordinates>41.294 -10.286 -7.932</coordinates>
 545                </atom>
 546             </base>
 547             <base>
 548                <position>43</position>
 549                <base-type>C</base-type>
 550                <atom serial="912">
 551                   <atom-type> P  </atom-type>
 552                      <coordinates>42.354 -9.284 -8.602</coordinates>
 553                </atom>
 554                <atom serial="920">
 555                   <atom-type> O3'</atom-type>
 556                      <coordinates>37.101 -8.296 -10.514</coordinates>
 557                </atom>
 558             </base>
 559             <base>
 560                <position>44</position>
 561                <base-type>G</base-type>
 562                <atom serial="932">
 563                   <atom-type> P  </atom-type>
 564                      <coordinates>36.225 -7.381 -9.523</coordinates>
 565                </atom>
 566                <atom serial="940">
 567                   <atom-type> O3'</atom-type>
 568                      <coordinates>31.469 -8.612 -8.166</coordinates>
 569                </atom>
 570             </base>
 571             <base>
 572                <position>45</position>
 573                <base-type>U</base-type>
 574                <atom serial="955">
 575                   <atom-type> P  </atom-type>
 576                      <coordinates>31.072 -7.255 -7.406</coordinates>
 577                </atom>
 578                <atom serial="963">
 579                   <atom-type> O3'</atom-type>
 580                      <coordinates>28.607 -6.549 -3.172</coordinates>
 581                </atom>
 582             </base>
 583             <base>
 584                <position>46</position>
 585                <base-type>C</base-type>
 586                <atom serial="975">
 587                   <atom-type> P  </atom-type>
 588                      <coordinates>28.715 -4.958 -2.980</coordinates>
 589                </atom>
 590                <atom serial="983">
 591                   <atom-type> O3'</atom-type>
 592                      <coordinates>28.390 -3.209 1.978</coordinates>
 593                </atom>
 594             </base>
 595             <base>
 596                <position>47</position>
 597                <base-type>A</base-type>
 598                <atom serial="995">
 599                   <atom-type> P  </atom-type>
 600                      <coordinates>28.521 -1.606 2.045</coordinates>
 601                </atom>
 602                <atom serial="1003">
 603                   <atom-type> O3'</atom-type>
 604                      <coordinates>30.414 1.118 5.980</coordinates>
 605                </atom>
 606             </base>
 607             <base>
 608                <position>48</position>
 609                <base-type>C</base-type>
 610                <atom serial="1017">
 611                   <atom-type> P  </atom-type>
 612                      <coordinates>30.264 2.613 5.413</coordinates>
 613                </atom>
 614                <atom serial="1025">
 615                   <atom-type> O3'</atom-type>
 616                      <coordinates>33.914 6.098 6.836</coordinates>
 617                </atom>
 618             </base>
 619             <base>
 620                <position>49</position>
 621                <base-type>A</base-type>
 622                <atom serial="1037">
 623                   <atom-type> P  </atom-type>
 624                      <coordinates>33.658 7.488 6.071</coordinates>
 625                </atom>
 626                <atom serial="1045">
 627                   <atom-type> O3'</atom-type>
 628                      <coordinates>37.349 10.868 4.871</coordinates>
 629                </atom>
 630             </base>
 631             <base>
 632                <position>50</position>
 633                <base-type>C</base-type>
 634                <atom serial="1059">
 635                   <atom-type> P  </atom-type>
 636                      <coordinates>36.440 12.000 4.175</coordinates>
 637                </atom>
 638                <atom serial="1067">
 639                   <atom-type> O3'</atom-type>
 640                      <coordinates>38.419 14.513 0.075</coordinates>
 641                </atom>
 642             </base>
 643             <base>
 644                <position>51</position>
 645                <base-type>A</base-type>
 646                <atom serial="1079">
 647                   <atom-type> P  </atom-type>
 648                      <coordinates>37.256 15.394 -0.597</coordinates>
 649                </atom>
 650                <atom serial="1087">
 651                   <atom-type> O3'</atom-type>
 652                      <coordinates>37.356 16.350 -5.434</coordinates>
 653                </atom>
 654             </base>
 655             <base>
 656                <position>52</position>
 657                <base-type>A</base-type>
 658                <atom serial="1101">
 659                   <atom-type> P  </atom-type>
 660                      <coordinates>36.109 17.208 -5.963</coordinates>
 661                </atom>
 662                <atom serial="1109">
 663                   <atom-type> O3'</atom-type>
 664                      <coordinates>32.771 16.782 -10.663</coordinates>
 665                </atom>
 666             </base>
 667             <base>
 668                <position>53</position>
 669                <base-type>C</base-type>
 670                <atom serial="1123">
 671                   <atom-type> P  </atom-type>
 672                      <coordinates>31.552 17.777 -10.378</coordinates>
 673                </atom>
 674                <atom serial="1131">
 675                   <atom-type> O3'</atom-type>
 676                      <coordinates>27.305 16.113 -12.908</coordinates>
 677                </atom>
 678             </base>
 679             <base>
 680                <position>54</position>
 681                <base-type>G</base-type>
 682                <atom serial="1143">
 683                   <atom-type> P  </atom-type>
 684                      <coordinates>26.189 17.220 -12.567</coordinates>
 685                </atom>
 686                <atom serial="1151">
 687                   <atom-type> O3'</atom-type>
 688                      <coordinates>21.401 15.463 -11.735</coordinates>
 689                </atom>
 690             </base>
 691             <base>
 692                <position>55</position>
 693                <base-type>A</base-type>
 694                <atom serial="1166">
 695                   <atom-type> P  </atom-type>
 696                      <coordinates>20.593 16.847 -11.641</coordinates>
 697                </atom>
 698                <atom serial="1174">
 699                   <atom-type> O3'</atom-type>
 700                      <coordinates>14.995 15.270 -10.886</coordinates>
 701                </atom>
 702             </base>
 703             <base>
 704                <position>56</position>
 705                <base-type>A</base-type>
 706                <atom serial="1188">
 707                   <atom-type> P  </atom-type>
 708                      <coordinates>14.099 15.609 -12.176</coordinates>
 709                </atom>
 710                <atom serial="1196">
 711                   <atom-type> O3'</atom-type>
 712                      <coordinates>11.604 16.216 -7.225</coordinates>
 713                </atom>
 714             </base>
 715             <base>
 716                <position>57</position>
 717                <base-type>G</base-type>
 718                <atom serial="1210">
 719                   <atom-type> P  </atom-type>
 720                      <coordinates>12.080 17.523 -6.429</coordinates>
 721                </atom>
 722                <atom serial="1218">
 723                   <atom-type> O3'</atom-type>
 724                      <coordinates>7.183 20.279 -7.550</coordinates>
 725                </atom>
 726             </base>
 727             <base>
 728                <position>58</position>
 729                <base-type>C</base-type>
 730                <atom serial="1233">
 731                   <atom-type> P  </atom-type>
 732                      <coordinates>5.983 21.146 -6.947</coordinates>
 733                </atom>
 734                <atom serial="1241">
 735                   <atom-type> O3'</atom-type>
 736                      <coordinates>0.457 20.033 -6.497</coordinates>
 737                </atom>
 738             </base>
 739             <base>
 740                <position>59</position>
 741                <base-type>G</base-type>
 742                <atom serial="1253">
 743                   <atom-type> P  </atom-type>
 744                      <coordinates>-0.544 20.976 -5.664</coordinates>
 745                </atom>
 746                <atom serial="1261">
 747                   <atom-type> O3'</atom-type>
 748                      <coordinates>-5.064 19.435 -4.069</coordinates>
 749                </atom>
 750             </base>
 751             <base>
 752                <position>60</position>
 753                <base-type>A</base-type>
 754                <atom serial="1276">
 755                   <atom-type> P  </atom-type>
 756                      <coordinates>-5.376 20.880 -3.446</coordinates>
 757                </atom>
 758                <atom serial="1284">
 759                   <atom-type> O3'</atom-type>
 760                      <coordinates>-4.674 20.226 1.852</coordinates>
 761                </atom>
 762             </base>
 763             <base>
 764                <position>61</position>
 765                <base-type>G</base-type>
 766                <atom serial="1298">
 767                   <atom-type> P  </atom-type>
 768                      <coordinates>-3.473 19.173 1.806</coordinates>
 769                </atom>
 770                <atom serial="1306">
 771                   <atom-type> O3'</atom-type>
 772                      <coordinates>-4.399 14.900 5.084</coordinates>
 773                </atom>
 774             </base>
 775             <base>
 776                <position>62</position>
 777                <base-type>A</base-type>
 778                <atom serial="1321">
 779                   <atom-type> P  </atom-type>
 780                      <coordinates>-3.268 13.764 4.956</coordinates>
 781                </atom>
 782                <atom serial="1329">
 783                   <atom-type> O3'</atom-type>
 784                      <coordinates>-4.326 8.891 5.778</coordinates>
 785                </atom>
 786             </base>
 787             <base>
 788                <position>63</position>
 789                <base-type>G</base-type>
 790                <atom serial="1343">
 791                   <atom-type> P  </atom-type>
 792                      <coordinates>-2.954 8.206 5.320</coordinates>
 793                </atom>
 794                <atom serial="1351">
 795                   <atom-type> O3'</atom-type>
 796                      <coordinates>-2.345 6.516 -0.228</coordinates>
 797                </atom>
 798             </base>
 799             <base>
 800                <position>64</position>
 801                <base-type>C</base-type>
 802                <atom serial="1366">
 803                   <atom-type> P  </atom-type>
 804                      <coordinates>-1.075 5.830 -0.928</coordinates>
 805                </atom>
 806                <atom serial="1374">
 807                   <atom-type> O3'</atom-type>
 808                      <coordinates>-0.362 6.130 -5.741</coordinates>
 809                </atom>
 810             </base>
 811             <base>
 812                <position>65</position>
 813                <base-type>G</base-type>
 814                <atom serial="1386">
 815                   <atom-type> P  </atom-type>
 816                      <coordinates>0.975 5.389 -6.226</coordinates>
 817                </atom>
 818                <atom serial="1394">
 819                   <atom-type> O3'</atom-type>
 820                      <coordinates>5.254 7.641 -9.385</coordinates>
 821                </atom>
 822             </base>
 823             <base>
 824                <position>66</position>
 825                <base-type>C</base-type>
 826                <atom serial="1409">
 827                   <atom-type> P  </atom-type>
 828                      <coordinates>6.414 6.540 -9.525</coordinates>
 829                </atom>
 830                <atom serial="1417">
 831                   <atom-type> O3'</atom-type>
 832                      <coordinates>11.228 8.547 -10.401</coordinates>
 833                </atom>
 834             </base>
 835             <base>
 836                <position>67</position>
 837                <base-type>G</base-type>
 838                <atom serial="1429">
 839                   <atom-type> P  </atom-type>
 840                      <coordinates>12.262 7.325 -10.276</coordinates>
 841                </atom>
 842                <atom serial="1437">
 843                   <atom-type> O3'</atom-type>
 844                      <coordinates>17.393 8.076 -7.688</coordinates>
 845                </atom>
 846             </base>
 847             <base>
 848                <position>68</position>
 849                <base-type>G</base-type>
 850                <atom serial="1452">
 851                   <atom-type> P  </atom-type>
 852                      <coordinates>18.588 8.450 -8.699</coordinates>
 853                </atom>
 854                <atom serial="1460">
 855                   <atom-type> O3'</atom-type>
 856                      <coordinates>17.674 3.102 -7.969</coordinates>
 857                </atom>
 858             </base>
 859             <base>
 860                <position>69</position>
 861                <base-type>U</base-type>
 862                <atom serial="1475">
 863                   <atom-type> P  </atom-type>
 864                      <coordinates>17.676 1.931 -6.877</coordinates>
 865                </atom>
 866                <atom serial="1483">
 867                   <atom-type> O3'</atom-type>
 868                      <coordinates>19.344 2.058 -2.233</coordinates>
 869                </atom>
 870             </base>
 871             <base>
 872                <position>70</position>
 873                <base-type>G</base-type>
 874                <atom serial="1495">
 875                   <atom-type> P  </atom-type>
 876                      <coordinates>19.325 0.478 -1.917</coordinates>
 877                </atom>
 878                <atom serial="1503">
 879                   <atom-type> O3'</atom-type>
 880                      <coordinates>20.086 -1.464 2.724</coordinates>
 881                </atom>
 882             </base>
 883             <base>
 884                <position>71</position>
 885                <base-type>A</base-type>
 886                <atom serial="1518">
 887                   <atom-type> P  </atom-type>
 888                      <coordinates>20.065 -3.053 2.482</coordinates>
 889                </atom>
 890                <atom serial="1526">
 891                   <atom-type> O3'</atom-type>
 892                      <coordinates>18.093 -6.084 6.331</coordinates>
 893                </atom>
 894             </base>
 895             <base>
 896                <position>72</position>
 897                <base-type>A</base-type>
 898                <atom serial="1540">
 899                   <atom-type> P  </atom-type>
 900                      <coordinates>18.058 -7.629 5.887</coordinates>
 901                </atom>
 902                <atom serial="1548">
 903                   <atom-type> O3'</atom-type>
 904                      <coordinates>14.491 -10.888 7.635</coordinates>
 905                </atom>
 906             </base>
 907             <base>
 908                <position>73</position>
 909                <base-type>U</base-type>
 910                <atom serial="1562">
 911                   <atom-type> P  </atom-type>
 912                      <coordinates>14.861 -12.252 6.871</coordinates>
 913                </atom>
 914                <atom serial="1570">
 915                   <atom-type> O3'</atom-type>
 916                      <coordinates>11.261 -15.468 5.182</coordinates>
 917                </atom>
 918             </base>
 919             <base>
 920                <position>74</position>
 921                <base-type>C</base-type>
 922                <atom serial="1582">
 923                   <atom-type> P  </atom-type>
 924                      <coordinates>12.050 -16.617 4.382</coordinates>
 925                </atom>
 926                <atom serial="1590">
 927                   <atom-type> O3'</atom-type>
 928                      <coordinates>9.736 -18.950 0.360</coordinates>
 929                </atom>
 930             </base>
 931             <base>
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 933                <base-type>A</base-type>
 934                <atom serial="1602">
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 937                </atom>
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 941                </atom>
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 945                <base-type>U</base-type>
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 949                </atom>
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 957                <base-type>U</base-type>
 958                <atom serial="1644">
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 961                </atom>
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 967             <base>
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 969                <base-type>G</base-type>
 970                <atom serial="1664">
 971                   <atom-type> P  </atom-type>
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 973                </atom>
 974                <atom serial="1672">
 975                   <atom-type> O3'</atom-type>
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 977                </atom>
 978             </base>
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 980                <position>79</position>
 981                <base-type>C</base-type>
 982                <atom serial="1687">
 983                   <atom-type> P  </atom-type>
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 985                </atom>
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 993                <base-type>A</base-type>
 994                <atom serial="1707">
 995                   <atom-type> P  </atom-type>
 996                      <coordinates>33.094 -23.432 -8.669</coordinates>
 997                </atom>
 998                <atom serial="1715">
 999                   <atom-type> O3'</atom-type>
1000                      <coordinates>37.970 -23.709 -10.290</coordinates>
1001                </atom>
1002             </base>
1003             <base>
1004                <position>81</position>
1005                <base-type>U</base-type>
1006                <atom serial="1729">
1007                   <atom-type> P  </atom-type>
1008                      <coordinates>38.180 -25.262 -9.938</coordinates>
1009                </atom>
1010                <atom serial="1737">
1011                   <atom-type> O3'</atom-type>
1012                      <coordinates>42.343 -27.512 -8.310</coordinates>
1013                </atom>
1014             </base>
1015             <base>
1016                <position>82</position>
1017                <base-type>C</base-type>
1018                <atom serial="1749">
1019                   <atom-type> P  </atom-type>
1020                      <coordinates>41.594 -28.924 -8.148</coordinates>
1021                </atom>
1022                <atom serial="1757">
1023                   <atom-type> O3'</atom-type>
1024                      <coordinates>42.976 -31.766 -3.839</coordinates>
1025                </atom>
1026             </base>
1027             <base>
1028                <position>83</position>
1029                <base-type>C</base-type>
1030                <atom serial="1769">
1031                   <atom-type> P  </atom-type>
1032                      <coordinates>41.983 -33.022 -3.698</coordinates>
1033                </atom>
1034                <atom serial="1777">
1035                   <atom-type> O3'</atom-type>
1036                      <coordinates>40.724 -35.051 0.999</coordinates>
1037                </atom>
1038             </base>
1039             <base>
1040                <position>84</position>
1041                <base-type>G</base-type>
1042                <atom serial="1789">
1043                   <atom-type> P  </atom-type>
1044                      <coordinates>39.499 -36.072 0.803</coordinates>
1045                </atom>
1046                <atom serial="1797">
1047                   <atom-type> O3'</atom-type>
1048                      <coordinates>35.976 -36.466 4.801</coordinates>
1049                </atom>
1050             </base>
1051             <base>
1052                <position>85</position>
1053                <base-type>C</base-type>
1054                <atom serial="1812">
1055                   <atom-type> P  </atom-type>
1056                      <coordinates>34.990 -37.680 4.429</coordinates>
1057                </atom>
1058                <atom serial="1820">
1059                   <atom-type> O3'</atom-type>
1060                      <coordinates>30.031 -37.549 5.509</coordinates>
1061                </atom>
1062             </base>
1063             <base>
1064                <position>86</position>
1065                <base-type>U</base-type>
1066                <atom serial="1832">
1067                   <atom-type> P  </atom-type>
1068                      <coordinates>29.628 -39.018 5.001</coordinates>
1069                </atom>
1070                <atom serial="1840">
1071                   <atom-type> O3'</atom-type>
1072                      <coordinates>25.142 -40.312 3.037</coordinates>
1073                </atom>
1074             </base>
1075             <base>
1076                <position>87</position>
1077                <base-type>C</base-type>
1078                <atom serial="1852">
1079                   <atom-type> P  </atom-type>
1080                      <coordinates>25.378 -41.854 2.656</coordinates>
1081                </atom>
1082                <atom serial="1860">
1083                   <atom-type> O3'</atom-type>
1084                      <coordinates>22.860 -43.926 -1.490</coordinates>
1085                </atom>
1086             </base>
1087             <base>
1088                <position>88</position>
1089                <base-type>C</base-type>
1090                <atom serial="1872">
1091                   <atom-type> P  </atom-type>
1092                      <coordinates>23.430 -45.414 -1.686</coordinates>
1093                </atom>
1094                <atom serial="1880">
1095                   <atom-type> O3'</atom-type>
1096                      <coordinates>24.098 -47.533 -6.370</coordinates>
1097                </atom>
1098             </base>
1099             <base>
1100                <position>89</position>
1101                <base-type>A</base-type>
1102                <atom serial="1892">
1103                   <atom-type> P  </atom-type>
1104                      <coordinates>24.738 -48.976 -6.070</coordinates>
1105                </atom>
1106                <atom serial="1900">
1107                   <atom-type> O3'</atom-type>
1108                      <coordinates>28.245 -51.062 -9.390</coordinates>
1109                </atom>
1110             </base>
1111             <str-annotation>
1112                <base-conformation>
1113                   <base-id><position>22</position></base-id>
1114                   <glycosyl>syn</glycosyl>
1115                </base-conformation>
1116                <base-conformation>
1117                   <base-id><position>68</position></base-id>
1118                   <glycosyl>syn</glycosyl>
1119                </base-conformation>
1120                <base-pair comment="?">
1121                   <base-id-5p>
1122                      <base-id><position>1</position></base-id>
1123                   </base-id-5p>
1124                   <base-id-3p>
1125                      <base-id><position>88</position></base-id>
1126                   </base-id-3p>
1127                   <edge-5p>+</edge-5p>
1128                   <edge-3p>+</edge-3p>
1129                   <bond-orientation>c</bond-orientation>
1130                </base-pair>
1131                <base-pair comment="?">
1132                   <base-id-5p>
1133                      <base-id><position>2</position></base-id>
1134                   </base-id-5p>
1135                   <base-id-3p>
1136                      <base-id><position>87</position></base-id>
1137                   </base-id-3p>
1138                   <edge-5p>+</edge-5p>
1139                   <edge-3p>+</edge-3p>
1140                   <bond-orientation>c</bond-orientation>
1141                </base-pair>
1142                <base-pair comment="?">
1143                   <base-id-5p>
1144                      <base-id><position>3</position></base-id>
1145                   </base-id-5p>
1146                   <base-id-3p>
1147                      <base-id><position>86</position></base-id>
1148                   </base-id-3p>
1149                   <edge-5p>-</edge-5p>
1150                   <edge-3p>-</edge-3p>
1151                   <bond-orientation>c</bond-orientation>
1152                </base-pair>
1153                <base-pair comment="?">
1154                   <base-id-5p>
1155                      <base-id><position>4</position></base-id>
1156                   </base-id-5p>
1157                   <base-id-3p>
1158                      <base-id><position>85</position></base-id>
1159                   </base-id-3p>
1160                   <edge-5p>+</edge-5p>
1161                   <edge-3p>+</edge-3p>
1162                   <bond-orientation>c</bond-orientation>
1163                </base-pair>
1164                <base-pair comment="?">
1165                   <base-id-5p>
1166                      <base-id><position>5</position></base-id>
1167                   </base-id-5p>
1168                   <base-id-3p>
1169                      <base-id><position>84</position></base-id>
1170                   </base-id-3p>
1171                   <edge-5p>W</edge-5p>
1172                   <edge-3p>W</edge-3p>
1173                   <bond-orientation>c</bond-orientation>
1174                </base-pair>
1175                <base-pair comment="?">
1176                   <base-id-5p>
1177                      <base-id><position>6</position></base-id>
1178                   </base-id-5p>
1179                   <base-id-3p>
1180                      <base-id><position>37</position></base-id>
1181                   </base-id-3p>
1182                   <edge-5p>S</edge-5p>
1183                   <edge-3p>H</edge-3p>
1184                   <bond-orientation>c</bond-orientation>
1185                </base-pair>
1186                <base-pair comment="?">
1187                   <base-id-5p>
1188                      <base-id><position>8</position></base-id>
1189                   </base-id-5p>
1190                   <base-id-3p>
1191                      <base-id><position>44</position></base-id>
1192                   </base-id-3p>
1193                   <edge-5p>S</edge-5p>
1194                   <edge-3p>S</edge-3p>
1195                   <bond-orientation>t</bond-orientation>
1196                </base-pair>
1197                <base-pair comment="?">
1198                   <base-id-5p>
1199                      <base-id><position>8</position></base-id>
1200                   </base-id-5p>
1201                   <base-id-3p>
1202                      <base-id><position>78</position></base-id>
1203                   </base-id-3p>
1204                   <edge-5p>H</edge-5p>
1205                   <edge-3p>S</edge-3p>
1206                   <bond-orientation>t</bond-orientation>
1207                </base-pair>
1208                <base-pair comment="?">
1209                   <base-id-5p>
1210                      <base-id><position>9</position></base-id>
1211                   </base-id-5p>
1212                   <base-id-3p>
1213                      <base-id><position>77</position></base-id>
1214                   </base-id-3p>
1215                   <edge-5p>W</edge-5p>
1216                   <edge-3p>W</edge-3p>
1217                   <bond-orientation>c</bond-orientation>
1218                </base-pair>
1219                <base-pair comment="?">
1220                   <base-id-5p>
1221                      <base-id><position>10</position></base-id>
1222                   </base-id-5p>
1223                   <base-id-3p>
1224                      <base-id><position>76</position></base-id>
1225                   </base-id-3p>
1226                   <edge-5p>-</edge-5p>
1227                   <edge-3p>-</edge-3p>
1228                   <bond-orientation>c</bond-orientation>
1229                </base-pair>
1230                <base-pair comment="?">
1231                   <base-id-5p>
1232                      <base-id><position>11</position></base-id>
1233                   </base-id-5p>
1234                   <base-id-3p>
1235                      <base-id><position>75</position></base-id>
1236                   </base-id-3p>
1237                   <edge-5p>-</edge-5p>
1238                   <edge-3p>-</edge-3p>
1239                   <bond-orientation>c</bond-orientation>
1240                </base-pair>
1241                <base-pair comment="?">
1242                   <base-id-5p>
1243                      <base-id><position>12</position></base-id>
1244                   </base-id-5p>
1245                   <base-id-3p>
1246                      <base-id><position>74</position></base-id>
1247                   </base-id-3p>
1248                   <edge-5p>+</edge-5p>
1249                   <edge-3p>+</edge-3p>
1250                   <bond-orientation>c</bond-orientation>
1251                </base-pair>
1252                <base-pair comment="?">
1253                   <base-id-5p>
1254                      <base-id><position>13</position></base-id>
1255                   </base-id-5p>
1256                   <base-id-3p>
1257                      <base-id><position>73</position></base-id>
1258                   </base-id-3p>
1259                   <edge-5p>-</edge-5p>
1260                   <edge-3p>-</edge-3p>
1261                   <bond-orientation>c</bond-orientation>
1262                </base-pair>
1263                <base-pair comment="?">
1264                   <base-id-5p>
1265                      <base-id><position>14</position></base-id>
1266                   </base-id-5p>
1267                   <base-id-3p>
1268                      <base-id><position>72</position></base-id>
1269                   </base-id-3p>
1270                   <edge-5p>-</edge-5p>
1271                   <edge-3p>-</edge-3p>
1272                   <bond-orientation>c</bond-orientation>
1273                </base-pair>
1274                <base-pair comment="?">
1275                   <base-id-5p>
1276                      <base-id><position>15</position></base-id>
1277                   </base-id-5p>
1278                   <base-id-3p>
1279                      <base-id><position>71</position></base-id>
1280                   </base-id-3p>
1281                   <edge-5p>-</edge-5p>
1282                   <edge-3p>-</edge-3p>
1283                   <bond-orientation>c</bond-orientation>
1284                </base-pair>
1285                <base-pair comment="?">
1286                   <base-id-5p>
1287                      <base-id><position>16</position></base-id>
1288                   </base-id-5p>
1289                   <base-id-3p>
1290                      <base-id><position>70</position></base-id>
1291                   </base-id-3p>
1292                   <edge-5p>+</edge-5p>
1293                   <edge-3p>+</edge-3p>
1294                   <bond-orientation>c</bond-orientation>
1295                </base-pair>
1296                <base-pair comment="?">
1297                   <base-id-5p>
1298                      <base-id><position>17</position></base-id>
1299                   </base-id-5p>
1300                   <base-id-3p>
1301                      <base-id><position>69</position></base-id>
1302                   </base-id-3p>
1303                   <edge-5p>W</edge-5p>
1304                   <edge-3p>W</edge-3p>
1305                   <bond-orientation>c</bond-orientation>
1306                </base-pair>
1307                <base-pair comment="?">
1308                   <base-id-5p>
1309                      <base-id><position>18</position></base-id>
1310                   </base-id-5p>
1311                   <base-id-3p>
1312                      <base-id><position>67</position></base-id>
1313                   </base-id-3p>
1314                   <edge-5p>+</edge-5p>
1315                   <edge-3p>+</edge-3p>
1316                   <bond-orientation>c</bond-orientation>
1317                </base-pair>
1318                <base-pair comment="?">
1319                   <base-id-5p>
1320                      <base-id><position>19</position></base-id>
1321                   </base-id-5p>
1322                   <base-id-3p>
1323                      <base-id><position>22</position></base-id>
1324                   </base-id-3p>
1325                   <edge-5p>S</edge-5p>
1326                   <edge-3p>S</edge-3p>
1327                   <bond-orientation>c</bond-orientation>
1328                </base-pair>
1329                <base-pair comment="?">
1330                   <base-id-5p>
1331                      <base-id><position>19</position></base-id>
1332                   </base-id-5p>
1333                   <base-id-3p>
1334                      <base-id><position>66</position></base-id>
1335                   </base-id-3p>
1336                   <edge-5p>+</edge-5p>
1337                   <edge-3p>+</edge-3p>
1338                   <bond-orientation>c</bond-orientation>
1339                </base-pair>
1340                <base-pair comment="?">
1341                   <base-id-5p>
1342                      <base-id><position>20</position></base-id>
1343                   </base-id-5p>
1344                   <base-id-3p>
1345                      <base-id><position>65</position></base-id>
1346                   </base-id-3p>
1347                   <edge-5p>W</edge-5p>
1348                   <edge-3p>W</edge-3p>
1349                   <bond-orientation>c</bond-orientation>
1350                </base-pair>
1351                <base-pair comment="?">
1352                   <base-id-5p>
1353                      <base-id><position>23</position></base-id>
1354                   </base-id-5p>
1355                   <base-id-3p>
1356                      <base-id><position>55</position></base-id>
1357                   </base-id-3p>
1358                   <edge-5p>H</edge-5p>
1359                   <edge-3p>W</edge-3p>
1360                   <bond-orientation>t</bond-orientation>
1361                </base-pair>
1362                <base-pair comment="?">
1363                   <base-id-5p>
1364                      <base-id><position>23</position></base-id>
1365                   </base-id-5p>
1366                   <base-id-3p>
1367                      <base-id><position>67</position></base-id>
1368                   </base-id-3p>
1369                   <edge-5p>W</edge-5p>
1370                   <edge-3p>S</edge-3p>
1371                   <bond-orientation>t</bond-orientation>
1372                </base-pair>
1373                <base-pair comment="?">
1374                   <base-id-5p>
1375                      <base-id><position>24</position></base-id>
1376                   </base-id-5p>
1377                   <base-id-3p>
1378                      <base-id><position>54</position></base-id>
1379                   </base-id-3p>
1380                   <edge-5p>H</edge-5p>
1381                   <edge-3p>S</edge-3p>
1382                   <bond-orientation>t</bond-orientation>
1383                </base-pair>
1384                <base-pair comment="?">
1385                   <base-id-5p>
1386                      <base-id><position>26</position></base-id>
1387                   </base-id-5p>
1388                   <base-id-3p>
1389                      <base-id><position>52</position></base-id>
1390                   </base-id-3p>
1391                   <edge-5p>W</edge-5p>
1392                   <edge-3p>W</edge-3p>
1393                   <bond-orientation>c</bond-orientation>
1394                </base-pair>
1395                <base-pair comment="?">
1396                   <base-id-5p>
1397                      <base-id><position>27</position></base-id>
1398                   </base-id-5p>
1399                   <base-id-3p>
1400                      <base-id><position>51</position></base-id>
1401                   </base-id-3p>
1402                   <edge-5p>-</edge-5p>
1403                   <edge-3p>-</edge-3p>
1404                   <bond-orientation>c</bond-orientation>
1405                </base-pair>
1406                <base-pair comment="?">
1407                   <base-id-5p>
1408                      <base-id><position>28</position></base-id>
1409                   </base-id-5p>
1410                   <base-id-3p>
1411                      <base-id><position>50</position></base-id>
1412                   </base-id-3p>
1413                   <edge-5p>+</edge-5p>
1414                   <edge-3p>+</edge-3p>
1415                   <bond-orientation>c</bond-orientation>
1416                </base-pair>
1417                <base-pair comment="?">
1418                   <base-id-5p>
1419                      <base-id><position>29</position></base-id>
1420                   </base-id-5p>
1421                   <base-id-3p>
1422                      <base-id><position>49</position></base-id>
1423                   </base-id-3p>
1424                   <edge-5p>-</edge-5p>
1425                   <edge-3p>-</edge-3p>
1426                   <bond-orientation>c</bond-orientation>
1427                </base-pair>
1428                <base-pair comment="?">
1429                   <base-id-5p>
1430                      <base-id><position>30</position></base-id>
1431                   </base-id-5p>
1432                   <base-id-3p>
1433                      <base-id><position>48</position></base-id>
1434                   </base-id-3p>
1435                   <edge-5p>+</edge-5p>
1436                   <edge-3p>+</edge-3p>
1437                   <bond-orientation>c</bond-orientation>
1438                </base-pair>
1439                <base-pair comment="?">
1440                   <base-id-5p>
1441                      <base-id><position>31</position></base-id>
1442                   </base-id-5p>
1443                   <base-id-3p>
1444                      <base-id><position>47</position></base-id>
1445                   </base-id-3p>
1446                   <edge-5p>-</edge-5p>
1447                   <edge-3p>-</edge-3p>
1448                   <bond-orientation>c</bond-orientation>
1449                </base-pair>
1450                <base-pair comment="?">
1451                   <base-id-5p>
1452                      <base-id><position>32</position></base-id>
1453                   </base-id-5p>
1454                   <base-id-3p>
1455                      <base-id><position>46</position></base-id>
1456                   </base-id-3p>
1457                   <edge-5p>+</edge-5p>
1458                   <edge-3p>+</edge-3p>
1459                   <bond-orientation>c</bond-orientation>
1460                </base-pair>
1461                <base-pair comment="?">
1462                   <base-id-5p>
1463                      <base-id><position>33</position></base-id>
1464                   </base-id-5p>
1465                   <base-id-3p>
1466                      <base-id><position>45</position></base-id>
1467                   </base-id-3p>
1468                   <edge-5p>-</edge-5p>
1469                   <edge-3p>-</edge-3p>
1470                   <bond-orientation>c</bond-orientation>
1471                </base-pair>
1472                <base-pair comment="?">
1473                   <base-id-5p>
1474                      <base-id><position>34</position></base-id>
1475                   </base-id-5p>
1476                   <base-id-3p>
1477                      <base-id><position>44</position></base-id>
1478                   </base-id-3p>
1479                   <edge-5p>W</edge-5p>
1480                   <edge-3p>W</edge-3p>
1481                   <bond-orientation>c</bond-orientation>
1482                </base-pair>
1483                <base-pair comment="?">
1484                   <base-id-5p>
1485                      <base-id><position>35</position></base-id>
1486                   </base-id-5p>
1487                   <base-id-3p>
1488                      <base-id><position>42</position></base-id>
1489                   </base-id-3p>
1490                   <edge-5p>W</edge-5p>
1491                   <edge-3p>H</edge-3p>
1492                   <bond-orientation>t</bond-orientation>
1493                </base-pair>
1494                <base-pair comment="?">
1495                   <base-id-5p>
1496                      <base-id><position>37</position></base-id>
1497                   </base-id-5p>
1498                   <base-id-3p>
1499                      <base-id><position>83</position></base-id>
1500                   </base-id-3p>
1501                   <edge-5p>+</edge-5p>
1502                   <edge-3p>+</edge-3p>
1503                   <bond-orientation>c</bond-orientation>
1504                </base-pair>
1505                <base-pair comment="?">
1506                   <base-id-5p>
1507                      <base-id><position>38</position></base-id>
1508                   </base-id-5p>
1509                   <base-id-3p>
1510                      <base-id><position>82</position></base-id>
1511                   </base-id-3p>
1512                   <edge-5p>+</edge-5p>
1513                   <edge-3p>+</edge-3p>
1514                   <bond-orientation>c</bond-orientation>
1515                </base-pair>
1516                <base-pair comment="?">
1517                   <base-id-5p>
1518                      <base-id><position>39</position></base-id>
1519                   </base-id-5p>
1520                   <base-id-3p>
1521                      <base-id><position>81</position></base-id>
1522                   </base-id-3p>
1523                   <edge-5p>-</edge-5p>
1524                   <edge-3p>-</edge-3p>
1525                   <bond-orientation>c</bond-orientation>
1526                </base-pair>
1527                <base-pair comment="?">
1528                   <base-id-5p>
1529                      <base-id><position>40</position></base-id>
1530                   </base-id-5p>
1531                   <base-id-3p>
1532                      <base-id><position>80</position></base-id>
1533                   </base-id-3p>
1534                   <edge-5p>-</edge-5p>
1535                   <edge-3p>-</edge-3p>
1536                   <bond-orientation>c</bond-orientation>
1537                </base-pair>
1538                <base-pair comment="?">
1539                   <base-id-5p>
1540                      <base-id><position>41</position></base-id>
1541                   </base-id-5p>
1542                   <base-id-3p>
1543                      <base-id><position>79</position></base-id>
1544                   </base-id-3p>
1545                   <edge-5p>W</edge-5p>
1546                   <edge-3p>W</edge-3p>
1547                   <bond-orientation>c</bond-orientation>
1548                </base-pair>
1549                <base-pair comment="?">
1550                   <base-id-5p>
1551                      <base-id><position>56</position></base-id>
1552                   </base-id-5p>
1553                   <base-id-3p>
1554                      <base-id><position>65</position></base-id>
1555                   </base-id-3p>
1556                   <edge-5p>S</edge-5p>
1557                   <edge-3p>S</edge-3p>
1558                   <bond-orientation>t</bond-orientation>
1559                </base-pair>
1560                <base-pair comment="?">
1561                   <base-id-5p>
1562                      <base-id><position>57</position></base-id>
1563                   </base-id-5p>
1564                   <base-id-3p>
1565                      <base-id><position>64</position></base-id>
1566                   </base-id-3p>
1567                   <edge-5p>+</edge-5p>
1568                   <edge-3p>+</edge-3p>
1569                   <bond-orientation>c</bond-orientation>
1570                </base-pair>
1571                <base-pair comment="?">
1572                   <base-id-5p>
1573                      <base-id><position>58</position></base-id>
1574                   </base-id-5p>
1575                   <base-id-3p>
1576                      <base-id><position>63</position></base-id>
1577                   </base-id-3p>
1578                   <edge-5p>+</edge-5p>
1579                   <edge-3p>+</edge-3p>
1580                   <bond-orientation>c</bond-orientation>
1581                </base-pair>
1582                <base-pair comment="?">
1583                   <base-id-5p>
1584                      <base-id><position>59</position></base-id>
1585                   </base-id-5p>
1586                   <base-id-3p>
1587                      <base-id><position>62</position></base-id>
1588                   </base-id-3p>
1589                   <edge-5p>W</edge-5p>
1590                   <edge-3p>H</edge-3p>
1591                   <bond-orientation>t</bond-orientation>
1592                </base-pair>
1593                <base-pair comment="?">
1594                   <base-id-5p>
1595                      <base-id><position>7</position></base-id>
1596                   </base-id-5p>
1597                   <base-id-3p>
1598                      <base-id><position>35</position></base-id>
1599                   </base-id-3p>
1600                   <edge-5p>!</edge-5p>
1601                   <edge-3p>!</edge-3p>
1602                   <bond-orientation>!</bond-orientation>
1603                </base-pair>
1604                <base-pair comment="?">
1605                   <base-id-5p>
1606                      <base-id><position>8</position></base-id>
1607                   </base-id-5p>
1608                   <base-id-3p>
1609                      <base-id><position>35</position></base-id>
1610                   </base-id-3p>
1611                   <edge-5p>!</edge-5p>
1612                   <edge-3p>!</edge-3p>
1613                   <bond-orientation>!</bond-orientation>
1614                </base-pair>
1615                <base-pair comment="?">
1616                   <base-id-5p>
1617                      <base-id><position>23</position></base-id>
1618                   </base-id-5p>
1619                   <base-id-3p>
1620                      <base-id><position>54</position></base-id>
1621                   </base-id-3p>
1622                   <edge-5p>!</edge-5p>
1623                   <edge-3p>!</edge-3p>
1624                   <bond-orientation>!</bond-orientation>
1625                </base-pair>
1626                <base-pair comment="?">
1627                   <base-id-5p>
1628                      <base-id><position>24</position></base-id>
1629                   </base-id-5p>
1630                   <base-id-3p>
1631                      <base-id><position>69</position></base-id>
1632                   </base-id-3p>
1633                   <edge-5p>!</edge-5p>
1634                   <edge-3p>!</edge-3p>
1635                   <bond-orientation>!</bond-orientation>
1636                </base-pair>
1637                <base-pair comment="?">
1638                   <base-id-5p>
1639                      <base-id><position>35</position></base-id>
1640                   </base-id-5p>
1641                   <base-id-3p>
1642                      <base-id><position>79</position></base-id>
1643                   </base-id-3p>
1644                   <edge-5p>!</edge-5p>
1645                   <edge-3p>!</edge-3p>
1646                   <bond-orientation>!</bond-orientation>
1647                </base-pair>
1648                <base-pair comment="?">
1649                   <base-id-5p>
1650                      <base-id><position>43</position></base-id>
1651                   </base-id-5p>
1652                   <base-id-3p>
1653                      <base-id><position>44</position></base-id>
1654                   </base-id-3p>
1655                   <edge-5p>!</edge-5p>
1656                   <edge-3p>!</edge-3p>
1657                   <bond-orientation>!</bond-orientation>
1658                </base-pair>
1659                <base-pair comment="?">
1660                   <base-id-5p>
1661                      <base-id><position>54</position></base-id>
1662                   </base-id-5p>
1663                   <base-id-3p>
1664                      <base-id><position>55</position></base-id>
1665                   </base-id-3p>
1666                   <edge-5p>!</edge-5p>
1667                   <edge-3p>!</edge-3p>
1668                   <bond-orientation>!</bond-orientation>
1669                </base-pair>
1670                <base-pair comment="?">
1671                   <base-id-5p>
1672                      <base-id><position>56</position></base-id>
1673                   </base-id-5p>
1674                   <base-id-3p>
1675                      <base-id><position>57</position></base-id>
1676                   </base-id-3p>
1677                   <edge-5p>!</edge-5p>
1678                   <edge-3p>!</edge-3p>
1679                   <bond-orientation>!</bond-orientation>
1680                </base-pair>
1681                <base-pair comment="?">
1682                   <base-id-5p>
1683                      <base-id><position>68</position></base-id>
1684                   </base-id-5p>
1685                   <base-id-3p>
1686                      <base-id><position>69</position></base-id>
1687                   </base-id-3p>
1688                   <edge-5p>!</edge-5p>
1689                   <edge-3p>!</edge-3p>
1690                   <bond-orientation>!</bond-orientation>
1691                </base-pair>
1692                <helix id="H1">
1693                   <base-id-5p>
1694                      <base-id><position>1</position></base-id>
1695                   </base-id-5p>
1696                   <base-id-3p>
1697                      <base-id><position>88</position></base-id>
1698                   </base-id-3p>
1699                   <length>5</length>
1700                </helix>
1701                <helix id="H2">
1702                   <base-id-5p>
1703                      <base-id><position>37</position></base-id>
1704                   </base-id-5p>
1705                   <base-id-3p>
1706                      <base-id><position>83</position></base-id>
1707                   </base-id-3p>
1708                   <length>5</length>
1709                </helix>
1710                <helix id="H3">
1711                   <base-id-5p>
1712                      <base-id><position>26</position></base-id>
1713                   </base-id-5p>
1714                   <base-id-3p>
1715                      <base-id><position>52</position></base-id>
1716                   </base-id-3p>
1717                   <length>9</length>
1718                </helix>
1719                <helix id="H4">
1720                   <base-id-5p>
1721                      <base-id><position>23</position></base-id>
1722                   </base-id-5p>
1723                   <base-id-3p>
1724                      <base-id><position>55</position></base-id>
1725                   </base-id-3p>
1726                   <length>2</length>
1727                </helix>
1728                <helix id="H5">
1729                   <base-id-5p>
1730                      <base-id><position>57</position></base-id>
1731                   </base-id-5p>
1732                   <base-id-3p>
1733                      <base-id><position>64</position></base-id>
1734                   </base-id-3p>
1735                   <length>3</length>
1736                </helix>
1737                <helix id="H6">
1738                   <base-id-5p>
1739                      <base-id><position>19</position></base-id>
1740                   </base-id-5p>
1741                   <base-id-3p>
1742                      <base-id><position>66</position></base-id>
1743                   </base-id-3p>
1744                   <length>2</length>
1745                </helix>
1746                <helix id="H7">
1747                   <base-id-5p>
1748                      <base-id><position>8</position></base-id>
1749                   </base-id-5p>
1750                   <base-id-3p>
1751                      <base-id><position>78</position></base-id>
1752                   </base-id-3p>
1753                   <length>10</length>
1754                </helix>
1755                <single-strand>
1756                   <segment>
1757                      <seg-name>SG1</seg-name>
1758                      <base-id-5p><base-id><position>6</position></base-id></base-id-5p>
1759                      <base-id-3p><base-id><position>7</position></base-id></base-id-3p>
1760                   </segment>
1761                </single-strand>
1762                <single-strand>
1763                   <segment>
1764                      <seg-name>SG2</seg-name>
1765                      <base-id-5p><base-id><position>18</position></base-id></base-id-5p>
1766                      <base-id-3p><base-id><position>18</position></base-id></base-id-3p>
1767                   </segment>
1768                </single-strand>
1769                <single-strand>
1770                   <segment>
1771                      <seg-name>SG3</seg-name>
1772                      <base-id-5p><base-id><position>21</position></base-id></base-id-5p>
1773                      <base-id-3p><base-id><position>22</position></base-id></base-id-3p>
1774                   </segment>
1775                </single-strand>
1776                <single-strand>
1777                   <segment>
1778                      <seg-name>SG4</seg-name>
1779                      <base-id-5p><base-id><position>25</position></base-id></base-id-5p>
1780                      <base-id-3p><base-id><position>25</position></base-id></base-id-3p>
1781                   </segment>
1782                </single-strand>
1783                <single-strand>
1784                   <segment>
1785                      <seg-name>SG5</seg-name>
1786                      <base-id-5p><base-id><position>35</position></base-id></base-id-5p>
1787                      <base-id-3p><base-id><position>36</position></base-id></base-id-3p>
1788                   </segment>
1789                </single-strand>
1790                <single-strand>
1791                   <segment>
1792                      <seg-name>SG6</seg-name>
1793                      <base-id-5p><base-id><position>42</position></base-id></base-id-5p>
1794                      <base-id-3p><base-id><position>43</position></base-id></base-id-3p>
1795                   </segment>
1796                </single-strand>
1797                <single-strand>
1798                   <segment>
1799                      <seg-name>SG7</seg-name>
1800                      <base-id-5p><base-id><position>53</position></base-id></base-id-5p>
1801                      <base-id-3p><base-id><position>53</position></base-id></base-id-3p>
1802                   </segment>
1803                </single-strand>
1804                <single-strand>
1805                   <segment>
1806                      <seg-name>SG8</seg-name>
1807                      <base-id-5p><base-id><position>56</position></base-id></base-id-5p>
1808                      <base-id-3p><base-id><position>56</position></base-id></base-id-3p>
1809                   </segment>
1810                </single-strand>
1811                <single-strand>
1812                   <segment>
1813                      <seg-name>SG9</seg-name>
1814                      <base-id-5p><base-id><position>60</position></base-id></base-id-5p>
1815                      <base-id-3p><base-id><position>61</position></base-id></base-id-3p>
1816                   </segment>
1817                </single-strand>
1818                <single-strand>
1819                   <segment>
1820                      <seg-name>SG10</seg-name>
1821                      <base-id-5p><base-id><position>67</position></base-id></base-id-5p>
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1823                   </segment>
1824                </single-strand>
1825                <single-strand>
1826                   <segment>
1827                      <seg-name>SG11</seg-name>
1828                      <base-id-5p><base-id><position>89</position></base-id></base-id-5p>
1829                      <base-id-3p><base-id><position>89</position></base-id></base-id-3p>
1830                   </segment>
1831                </single-strand>
1832             </str-annotation>
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1953                </ss-base-coord>
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1956                   <coordinates>219.423 294.896</coordinates>
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1964                   <coordinates>219.423 257.089</coordinates>
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1966                <ss-base-coord>
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1968                   <coordinates>219.423 238.185</coordinates>
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1970                <ss-base-coord>
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1972                   <coordinates>287.476 124.764</coordinates>
1973                </ss-base-coord>
1974                <ss-base-coord>
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1976                   <coordinates>276.134 124.764</coordinates>
1977                </ss-base-coord>
1978                <ss-base-coord>
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1980                   <coordinates>264.792 124.764</coordinates>
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1985                </ss-base-coord>
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1988                   <coordinates>264.792 162.571</coordinates>
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1994                <ss-base-coord>
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1996                   <coordinates>264.792 200.378</coordinates>
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2000                   <coordinates>276.134 200.378</coordinates>
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2004                   <coordinates>287.476 200.378</coordinates>
2005                </ss-base-coord>
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2008                   <coordinates>264.792 238.185</coordinates>
2009                </ss-base-coord>
2010                <ss-base-coord>
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2012                   <coordinates>264.792 257.089</coordinates>
2013                </ss-base-coord>
2014                <ss-base-coord>
2015                   <base-id><position>46</position></base-id>
2016                   <coordinates>264.792 275.992</coordinates>
2017                </ss-base-coord>
2018                <ss-base-coord>
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2020                   <coordinates>264.792 294.896</coordinates>
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2032                   <coordinates>264.792 351.607</coordinates>
2033                </ss-base-coord>
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2036                   <coordinates>264.792 370.510</coordinates>
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2100                   <coordinates>93.488 437.249</coordinates>
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2190             </secondary-structure-display>
2191          </model>
2192       </structure>
2193    </molecule>
2194
2195
2196    <interactions>
2197             <str-annotation>
2198             </str-annotation>
2199    </interactions>
2200 </rnaml>