JAL-2754 Sequence.findFeatures(fromCol, toCol)
[jalview.git] / examples / testdata / test.rnaml
1 <?xml version="1.0"?>
2 <!DOCTYPE rnaml SYSTEM "rnaml.dtd">
3
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15             1    2    3    4    5    6    7    8    9   10 
16            11   12   13   14   15   16   17   18   19   20 
17            21   22   23   24   25   26   27   28   29   30 
18            31   32   33   34   35   36   37   38   39   40 
19            41   42   43   44   45   46   47   48   49   50 
20            51   52   53   54   55   56   57   58   59   60 
21            61   62   63   64   65   66   67   68   69   70 
22            71   72   73   74   75   76   77   78   79   80 
23            81   82   83   84   85   86   87   88   89 
24          </numbering-table>
25          <seq-data>
26             GGAGAGUAGA UGAUUCGCGU UAAGCGUGUG UGAAUGGGAU GUCGUCACAC AACGAAGCGA 
27             GAGCGCGGUG AAUCAUUGCA UCCGCUCCA
28          </seq-data>
29          <seq-annotation comment="?">
30             <segment>
31                <seg-name>LOOP1</seg-name>
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38          <model id="?">
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40                <method>Crystallography ?</method>
41                <resolution>? Angstroms</resolution>
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85                </atom>
86                <atom serial="77">
87                   <atom-type> O3'</atom-type>
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99                   <atom-type> O3'</atom-type>
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101                </atom>
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103             <base>
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106                <atom serial="114">
107                   <atom-type> P  </atom-type>
108                      <coordinates>21.792 -26.530 -1.767</coordinates>
109                </atom>
110                <atom serial="122">
111                   <atom-type> O3'</atom-type>
112                      <coordinates>24.489 -23.234 1.411</coordinates>
113                </atom>
114             </base>
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121                </atom>
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123                   <atom-type> O3'</atom-type>
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125                </atom>
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133                </atom>
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143                   <atom-type> P  </atom-type>
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157                </atom>
158                <atom serial="210">
159                   <atom-type> O3'</atom-type>
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162             </base>
163             <base>
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167                   <atom-type> P  </atom-type>
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169                </atom>
170                <atom serial="232">
171                   <atom-type> O3'</atom-type>
172                      <coordinates>16.589 -7.608 -11.167</coordinates>
173                </atom>
174             </base>
175             <base>
176                <position>12</position>
177                <base-type>G</base-type>
178                <atom serial="244">
179                   <atom-type> P  </atom-type>
180                      <coordinates>15.563 -6.541 -10.537</coordinates>
181                </atom>
182                <atom serial="252">
183                   <atom-type> O3'</atom-type>
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185                </atom>
186             </base>
187             <base>
188                <position>13</position>
189                <base-type>A</base-type>
190                <atom serial="267">
191                   <atom-type> P  </atom-type>
192                      <coordinates>9.719 -6.369 -9.662</coordinates>
193                </atom>
194                <atom serial="275">
195                   <atom-type> O3'</atom-type>
196                      <coordinates>5.301 -7.413 -7.169</coordinates>
197                </atom>
198             </base>
199             <base>
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201                <base-type>U</base-type>
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203                   <atom-type> P  </atom-type>
204                      <coordinates>4.913 -6.043 -6.428</coordinates>
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207                   <atom-type> O3'</atom-type>
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209                </atom>
210             </base>
211             <base>
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213                <base-type>U</base-type>
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215                   <atom-type> P  </atom-type>
216                      <coordinates>2.306 -4.695 -1.355</coordinates>
217                </atom>
218                <atom serial="317">
219                   <atom-type> O3'</atom-type>
220                      <coordinates>2.523 -3.519 3.678</coordinates>
221                </atom>
222             </base>
223             <base>
224                <position>16</position>
225                <base-type>C</base-type>
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227                   <atom-type> P  </atom-type>
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239                   <atom-type> P  </atom-type>
240                      <coordinates>5.097 2.068 7.705</coordinates>
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242                <atom serial="357">
243                   <atom-type> O3'</atom-type>
244                      <coordinates>9.837 5.342 8.056</coordinates>
245                </atom>
246             </base>
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248                <position>18</position>
249                <base-type>C</base-type>
250                <atom serial="372">
251                   <atom-type> P  </atom-type>
252                      <coordinates>9.957 6.906 7.713</coordinates>
253                </atom>
254                <atom serial="380">
255                   <atom-type> O3'</atom-type>
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259             <base>
260                <position>19</position>
261                <base-type>G</base-type>
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264                      <coordinates>13.701 10.760 6.394</coordinates>
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266                <atom serial="400">
267                   <atom-type> O3'</atom-type>
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279                   <atom-type> O3'</atom-type>
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283             <base>
284                <position>21</position>
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289                </atom>
290                <atom serial="443">
291                   <atom-type> O3'</atom-type>
292                      <coordinates>18.055 19.867 1.942</coordinates>
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294             </base>
295             <base>
296                <position>22</position>
297                <base-type>A</base-type>
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299                   <atom-type> P  </atom-type>
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302                <atom serial="463">
303                   <atom-type> O3'</atom-type>
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306             </base>
307             <base>
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315                   <atom-type> O3'</atom-type>
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323                   <atom-type> P  </atom-type>
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326                <atom serial="507">
327                   <atom-type> O3'</atom-type>
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335                   <atom-type> P  </atom-type>
336                      <coordinates>24.698 3.762 -0.344</coordinates>
337                </atom>
338                <atom serial="530">
339                   <atom-type> O3'</atom-type>
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343             <base>
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345                <base-type>G</base-type>
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349                </atom>
350                <atom serial="550">
351                   <atom-type> O3'</atom-type>
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355             <base>
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357                <base-type>U</base-type>
358                <atom serial="565">
359                   <atom-type> P  </atom-type>
360                      <coordinates>29.215 0.976 -9.386</coordinates>
361                </atom>
362                <atom serial="573">
363                   <atom-type> O3'</atom-type>
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366             </base>
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375                   <atom-type> O3'</atom-type>
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381                <base-type>U</base-type>
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383                   <atom-type> P  </atom-type>
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386                <atom serial="616">
387                   <atom-type> O3'</atom-type>
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391             <base>
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393                <base-type>G</base-type>
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395                   <atom-type> P  </atom-type>
396                      <coordinates>44.247 2.191 -6.693</coordinates>
397                </atom>
398                <atom serial="636">
399                   <atom-type> O3'</atom-type>
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401                </atom>
402             </base>
403             <base>
404                <position>31</position>
405                <base-type>U</base-type>
406                <atom serial="651">
407                   <atom-type> P  </atom-type>
408                      <coordinates>46.082 0.594 -1.358</coordinates>
409                </atom>
410                <atom serial="659">
411                   <atom-type> O3'</atom-type>
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413                </atom>
414             </base>
415             <base>
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417                <base-type>G</base-type>
418                <atom serial="671">
419                   <atom-type> P  </atom-type>
420                      <coordinates>46.093 -1.940 4.026</coordinates>
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422                <atom serial="679">
423                   <atom-type> O3'</atom-type>
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431                   <atom-type> P  </atom-type>
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435                   <atom-type> O3'</atom-type>
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459                   <atom-type> O3'</atom-type>
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472                      <coordinates>29.146 -23.892 4.012</coordinates>
473                </atom>
474             </base>
475             <base>
476                <position>37</position>
477                <base-type>G</base-type>
478                <atom serial="781">
479                   <atom-type> P  </atom-type>
480                      <coordinates>29.023 -23.774 5.611</coordinates>
481                </atom>
482                <atom serial="789">
483                   <atom-type> O3'</atom-type>
484                      <coordinates>32.904 -25.203 8.677</coordinates>
485                </atom>
486             </base>
487             <base>
488                <position>38</position>
489                <base-type>G</base-type>
490                <atom serial="804">
491                   <atom-type> P  </atom-type>
492                      <coordinates>34.031 -24.091 8.410</coordinates>
493                </atom>
494                <atom serial="812">
495                   <atom-type> O3'</atom-type>
496                      <coordinates>38.938 -24.200 8.769</coordinates>
497                </atom>
498             </base>
499             <base>
500                <position>39</position>
501                <base-type>A</base-type>
502                <atom serial="827">
503                   <atom-type> P  </atom-type>
504                      <coordinates>39.341 -22.721 8.285</coordinates>
505                </atom>
506                <atom serial="835">
507                   <atom-type> O3'</atom-type>
508                      <coordinates>43.751 -21.471 6.096</coordinates>
509                </atom>
510             </base>
511             <base>
512                <position>40</position>
513                <base-type>U</base-type>
514                <atom serial="849">
515                   <atom-type> P  </atom-type>
516                      <coordinates>43.479 -19.903 5.856</coordinates>
517                </atom>
518                <atom serial="857">
519                   <atom-type> O3'</atom-type>
520                      <coordinates>45.395 -17.759 1.488</coordinates>
521                </atom>
522             </base>
523             <base>
524                <position>41</position>
525                <base-type>G</base-type>
526                <atom serial="869">
527                   <atom-type> P  </atom-type>
528                      <coordinates>44.930 -16.222 1.586</coordinates>
529                </atom>
530                <atom serial="877">
531                   <atom-type> O3'</atom-type>
532                      <coordinates>43.506 -13.581 -2.651</coordinates>
533                </atom>
534             </base>
535             <base>
536                <position>42</position>
537                <base-type>U</base-type>
538                <atom serial="892">
539                   <atom-type> P  </atom-type>
540                      <coordinates>42.831 -12.121 -2.591</coordinates>
541                </atom>
542                <atom serial="900">
543                   <atom-type> O3'</atom-type>
544                      <coordinates>41.294 -10.286 -7.932</coordinates>
545                </atom>
546             </base>
547             <base>
548                <position>43</position>
549                <base-type>C</base-type>
550                <atom serial="912">
551                   <atom-type> P  </atom-type>
552                      <coordinates>42.354 -9.284 -8.602</coordinates>
553                </atom>
554                <atom serial="920">
555                   <atom-type> O3'</atom-type>
556                      <coordinates>37.101 -8.296 -10.514</coordinates>
557                </atom>
558             </base>
559             <base>
560                <position>44</position>
561                <base-type>G</base-type>
562                <atom serial="932">
563                   <atom-type> P  </atom-type>
564                      <coordinates>36.225 -7.381 -9.523</coordinates>
565                </atom>
566                <atom serial="940">
567                   <atom-type> O3'</atom-type>
568                      <coordinates>31.469 -8.612 -8.166</coordinates>
569                </atom>
570             </base>
571             <base>
572                <position>45</position>
573                <base-type>U</base-type>
574                <atom serial="955">
575                   <atom-type> P  </atom-type>
576                      <coordinates>31.072 -7.255 -7.406</coordinates>
577                </atom>
578                <atom serial="963">
579                   <atom-type> O3'</atom-type>
580                      <coordinates>28.607 -6.549 -3.172</coordinates>
581                </atom>
582             </base>
583             <base>
584                <position>46</position>
585                <base-type>C</base-type>
586                <atom serial="975">
587                   <atom-type> P  </atom-type>
588                      <coordinates>28.715 -4.958 -2.980</coordinates>
589                </atom>
590                <atom serial="983">
591                   <atom-type> O3'</atom-type>
592                      <coordinates>28.390 -3.209 1.978</coordinates>
593                </atom>
594             </base>
595             <base>
596                <position>47</position>
597                <base-type>A</base-type>
598                <atom serial="995">
599                   <atom-type> P  </atom-type>
600                      <coordinates>28.521 -1.606 2.045</coordinates>
601                </atom>
602                <atom serial="1003">
603                   <atom-type> O3'</atom-type>
604                      <coordinates>30.414 1.118 5.980</coordinates>
605                </atom>
606             </base>
607             <base>
608                <position>48</position>
609                <base-type>C</base-type>
610                <atom serial="1017">
611                   <atom-type> P  </atom-type>
612                      <coordinates>30.264 2.613 5.413</coordinates>
613                </atom>
614                <atom serial="1025">
615                   <atom-type> O3'</atom-type>
616                      <coordinates>33.914 6.098 6.836</coordinates>
617                </atom>
618             </base>
619             <base>
620                <position>49</position>
621                <base-type>A</base-type>
622                <atom serial="1037">
623                   <atom-type> P  </atom-type>
624                      <coordinates>33.658 7.488 6.071</coordinates>
625                </atom>
626                <atom serial="1045">
627                   <atom-type> O3'</atom-type>
628                      <coordinates>37.349 10.868 4.871</coordinates>
629                </atom>
630             </base>
631             <base>
632                <position>50</position>
633                <base-type>C</base-type>
634                <atom serial="1059">
635                   <atom-type> P  </atom-type>
636                      <coordinates>36.440 12.000 4.175</coordinates>
637                </atom>
638                <atom serial="1067">
639                   <atom-type> O3'</atom-type>
640                      <coordinates>38.419 14.513 0.075</coordinates>
641                </atom>
642             </base>
643             <base>
644                <position>51</position>
645                <base-type>A</base-type>
646                <atom serial="1079">
647                   <atom-type> P  </atom-type>
648                      <coordinates>37.256 15.394 -0.597</coordinates>
649                </atom>
650                <atom serial="1087">
651                   <atom-type> O3'</atom-type>
652                      <coordinates>37.356 16.350 -5.434</coordinates>
653                </atom>
654             </base>
655             <base>
656                <position>52</position>
657                <base-type>A</base-type>
658                <atom serial="1101">
659                   <atom-type> P  </atom-type>
660                      <coordinates>36.109 17.208 -5.963</coordinates>
661                </atom>
662                <atom serial="1109">
663                   <atom-type> O3'</atom-type>
664                      <coordinates>32.771 16.782 -10.663</coordinates>
665                </atom>
666             </base>
667             <base>
668                <position>53</position>
669                <base-type>C</base-type>
670                <atom serial="1123">
671                   <atom-type> P  </atom-type>
672                      <coordinates>31.552 17.777 -10.378</coordinates>
673                </atom>
674                <atom serial="1131">
675                   <atom-type> O3'</atom-type>
676                      <coordinates>27.305 16.113 -12.908</coordinates>
677                </atom>
678             </base>
679             <base>
680                <position>54</position>
681                <base-type>G</base-type>
682                <atom serial="1143">
683                   <atom-type> P  </atom-type>
684                      <coordinates>26.189 17.220 -12.567</coordinates>
685                </atom>
686                <atom serial="1151">
687                   <atom-type> O3'</atom-type>
688                      <coordinates>21.401 15.463 -11.735</coordinates>
689                </atom>
690             </base>
691             <base>
692                <position>55</position>
693                <base-type>A</base-type>
694                <atom serial="1166">
695                   <atom-type> P  </atom-type>
696                      <coordinates>20.593 16.847 -11.641</coordinates>
697                </atom>
698                <atom serial="1174">
699                   <atom-type> O3'</atom-type>
700                      <coordinates>14.995 15.270 -10.886</coordinates>
701                </atom>
702             </base>
703             <base>
704                <position>56</position>
705                <base-type>A</base-type>
706                <atom serial="1188">
707                   <atom-type> P  </atom-type>
708                      <coordinates>14.099 15.609 -12.176</coordinates>
709                </atom>
710                <atom serial="1196">
711                   <atom-type> O3'</atom-type>
712                      <coordinates>11.604 16.216 -7.225</coordinates>
713                </atom>
714             </base>
715             <base>
716                <position>57</position>
717                <base-type>G</base-type>
718                <atom serial="1210">
719                   <atom-type> P  </atom-type>
720                      <coordinates>12.080 17.523 -6.429</coordinates>
721                </atom>
722                <atom serial="1218">
723                   <atom-type> O3'</atom-type>
724                      <coordinates>7.183 20.279 -7.550</coordinates>
725                </atom>
726             </base>
727             <base>
728                <position>58</position>
729                <base-type>C</base-type>
730                <atom serial="1233">
731                   <atom-type> P  </atom-type>
732                      <coordinates>5.983 21.146 -6.947</coordinates>
733                </atom>
734                <atom serial="1241">
735                   <atom-type> O3'</atom-type>
736                      <coordinates>0.457 20.033 -6.497</coordinates>
737                </atom>
738             </base>
739             <base>
740                <position>59</position>
741                <base-type>G</base-type>
742                <atom serial="1253">
743                   <atom-type> P  </atom-type>
744                      <coordinates>-0.544 20.976 -5.664</coordinates>
745                </atom>
746                <atom serial="1261">
747                   <atom-type> O3'</atom-type>
748                      <coordinates>-5.064 19.435 -4.069</coordinates>
749                </atom>
750             </base>
751             <base>
752                <position>60</position>
753                <base-type>A</base-type>
754                <atom serial="1276">
755                   <atom-type> P  </atom-type>
756                      <coordinates>-5.376 20.880 -3.446</coordinates>
757                </atom>
758                <atom serial="1284">
759                   <atom-type> O3'</atom-type>
760                      <coordinates>-4.674 20.226 1.852</coordinates>
761                </atom>
762             </base>
763             <base>
764                <position>61</position>
765                <base-type>G</base-type>
766                <atom serial="1298">
767                   <atom-type> P  </atom-type>
768                      <coordinates>-3.473 19.173 1.806</coordinates>
769                </atom>
770                <atom serial="1306">
771                   <atom-type> O3'</atom-type>
772                      <coordinates>-4.399 14.900 5.084</coordinates>
773                </atom>
774             </base>
775             <base>
776                <position>62</position>
777                <base-type>A</base-type>
778                <atom serial="1321">
779                   <atom-type> P  </atom-type>
780                      <coordinates>-3.268 13.764 4.956</coordinates>
781                </atom>
782                <atom serial="1329">
783                   <atom-type> O3'</atom-type>
784                      <coordinates>-4.326 8.891 5.778</coordinates>
785                </atom>
786             </base>
787             <base>
788                <position>63</position>
789                <base-type>G</base-type>
790                <atom serial="1343">
791                   <atom-type> P  </atom-type>
792                      <coordinates>-2.954 8.206 5.320</coordinates>
793                </atom>
794                <atom serial="1351">
795                   <atom-type> O3'</atom-type>
796                      <coordinates>-2.345 6.516 -0.228</coordinates>
797                </atom>
798             </base>
799             <base>
800                <position>64</position>
801                <base-type>C</base-type>
802                <atom serial="1366">
803                   <atom-type> P  </atom-type>
804                      <coordinates>-1.075 5.830 -0.928</coordinates>
805                </atom>
806                <atom serial="1374">
807                   <atom-type> O3'</atom-type>
808                      <coordinates>-0.362 6.130 -5.741</coordinates>
809                </atom>
810             </base>
811             <base>
812                <position>65</position>
813                <base-type>G</base-type>
814                <atom serial="1386">
815                   <atom-type> P  </atom-type>
816                      <coordinates>0.975 5.389 -6.226</coordinates>
817                </atom>
818                <atom serial="1394">
819                   <atom-type> O3'</atom-type>
820                      <coordinates>5.254 7.641 -9.385</coordinates>
821                </atom>
822             </base>
823             <base>
824                <position>66</position>
825                <base-type>C</base-type>
826                <atom serial="1409">
827                   <atom-type> P  </atom-type>
828                      <coordinates>6.414 6.540 -9.525</coordinates>
829                </atom>
830                <atom serial="1417">
831                   <atom-type> O3'</atom-type>
832                      <coordinates>11.228 8.547 -10.401</coordinates>
833                </atom>
834             </base>
835             <base>
836                <position>67</position>
837                <base-type>G</base-type>
838                <atom serial="1429">
839                   <atom-type> P  </atom-type>
840                      <coordinates>12.262 7.325 -10.276</coordinates>
841                </atom>
842                <atom serial="1437">
843                   <atom-type> O3'</atom-type>
844                      <coordinates>17.393 8.076 -7.688</coordinates>
845                </atom>
846             </base>
847             <base>
848                <position>68</position>
849                <base-type>G</base-type>
850                <atom serial="1452">
851                   <atom-type> P  </atom-type>
852                      <coordinates>18.588 8.450 -8.699</coordinates>
853                </atom>
854                <atom serial="1460">
855                   <atom-type> O3'</atom-type>
856                      <coordinates>17.674 3.102 -7.969</coordinates>
857                </atom>
858             </base>
859             <base>
860                <position>69</position>
861                <base-type>U</base-type>
862                <atom serial="1475">
863                   <atom-type> P  </atom-type>
864                      <coordinates>17.676 1.931 -6.877</coordinates>
865                </atom>
866                <atom serial="1483">
867                   <atom-type> O3'</atom-type>
868                      <coordinates>19.344 2.058 -2.233</coordinates>
869                </atom>
870             </base>
871             <base>
872                <position>70</position>
873                <base-type>G</base-type>
874                <atom serial="1495">
875                   <atom-type> P  </atom-type>
876                      <coordinates>19.325 0.478 -1.917</coordinates>
877                </atom>
878                <atom serial="1503">
879                   <atom-type> O3'</atom-type>
880                      <coordinates>20.086 -1.464 2.724</coordinates>
881                </atom>
882             </base>
883             <base>
884                <position>71</position>
885                <base-type>A</base-type>
886                <atom serial="1518">
887                   <atom-type> P  </atom-type>
888                      <coordinates>20.065 -3.053 2.482</coordinates>
889                </atom>
890                <atom serial="1526">
891                   <atom-type> O3'</atom-type>
892                      <coordinates>18.093 -6.084 6.331</coordinates>
893                </atom>
894             </base>
895             <base>
896                <position>72</position>
897                <base-type>A</base-type>
898                <atom serial="1540">
899                   <atom-type> P  </atom-type>
900                      <coordinates>18.058 -7.629 5.887</coordinates>
901                </atom>
902                <atom serial="1548">
903                   <atom-type> O3'</atom-type>
904                      <coordinates>14.491 -10.888 7.635</coordinates>
905                </atom>
906             </base>
907             <base>
908                <position>73</position>
909                <base-type>U</base-type>
910                <atom serial="1562">
911                   <atom-type> P  </atom-type>
912                      <coordinates>14.861 -12.252 6.871</coordinates>
913                </atom>
914                <atom serial="1570">
915                   <atom-type> O3'</atom-type>
916                      <coordinates>11.261 -15.468 5.182</coordinates>
917                </atom>
918             </base>
919             <base>
920                <position>74</position>
921                <base-type>C</base-type>
922                <atom serial="1582">
923                   <atom-type> P  </atom-type>
924                      <coordinates>12.050 -16.617 4.382</coordinates>
925                </atom>
926                <atom serial="1590">
927                   <atom-type> O3'</atom-type>
928                      <coordinates>9.736 -18.950 0.360</coordinates>
929                </atom>
930             </base>
931             <base>
932                <position>75</position>
933                <base-type>A</base-type>
934                <atom serial="1602">
935                   <atom-type> P  </atom-type>
936                      <coordinates>10.800 -19.899 -0.381</coordinates>
937                </atom>
938                <atom serial="1610">
939                   <atom-type> O3'</atom-type>
940                      <coordinates>10.831 -20.869 -5.373</coordinates>
941                </atom>
942             </base>
943             <base>
944                <position>76</position>
945                <base-type>U</base-type>
946                <atom serial="1624">
947                   <atom-type> P  </atom-type>
948                      <coordinates>12.149 -21.782 -5.481</coordinates>
949                </atom>
950                <atom serial="1632">
951                   <atom-type> O3'</atom-type>
952                      <coordinates>15.150 -21.466 -9.686</coordinates>
953                </atom>
954             </base>
955             <base>
956                <position>77</position>
957                <base-type>U</base-type>
958                <atom serial="1644">
959                   <atom-type> P  </atom-type>
960                      <coordinates>16.383 -22.407 -9.255</coordinates>
961                </atom>
962                <atom serial="1652">
963                   <atom-type> O3'</atom-type>
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965                </atom>
966             </base>
967             <base>
968                <position>78</position>
969                <base-type>G</base-type>
970                <atom serial="1664">
971                   <atom-type> P  </atom-type>
972                      <coordinates>22.003 -22.328 -10.053</coordinates>
973                </atom>
974                <atom serial="1672">
975                   <atom-type> O3'</atom-type>
976                      <coordinates>26.870 -21.574 -8.157</coordinates>
977                </atom>
978             </base>
979             <base>
980                <position>79</position>
981                <base-type>C</base-type>
982                <atom serial="1687">
983                   <atom-type> P  </atom-type>
984                      <coordinates>27.394 -22.916 -7.439</coordinates>
985                </atom>
986                <atom serial="1695">
987                   <atom-type> O3'</atom-type>
988                      <coordinates>32.738 -22.221 -7.672</coordinates>
989                </atom>
990             </base>
991             <base>
992                <position>80</position>
993                <base-type>A</base-type>
994                <atom serial="1707">
995                   <atom-type> P  </atom-type>
996                      <coordinates>33.094 -23.432 -8.669</coordinates>
997                </atom>
998                <atom serial="1715">
999                   <atom-type> O3'</atom-type>
1000                      <coordinates>37.970 -23.709 -10.290</coordinates>
1001                </atom>
1002             </base>
1003             <base>
1004                <position>81</position>
1005                <base-type>U</base-type>
1006                <atom serial="1729">
1007                   <atom-type> P  </atom-type>
1008                      <coordinates>38.180 -25.262 -9.938</coordinates>
1009                </atom>
1010                <atom serial="1737">
1011                   <atom-type> O3'</atom-type>
1012                      <coordinates>42.343 -27.512 -8.310</coordinates>
1013                </atom>
1014             </base>
1015             <base>
1016                <position>82</position>
1017                <base-type>C</base-type>
1018                <atom serial="1749">
1019                   <atom-type> P  </atom-type>
1020                      <coordinates>41.594 -28.924 -8.148</coordinates>
1021                </atom>
1022                <atom serial="1757">
1023                   <atom-type> O3'</atom-type>
1024                      <coordinates>42.976 -31.766 -3.839</coordinates>
1025                </atom>
1026             </base>
1027             <base>
1028                <position>83</position>
1029                <base-type>C</base-type>
1030                <atom serial="1769">
1031                   <atom-type> P  </atom-type>
1032                      <coordinates>41.983 -33.022 -3.698</coordinates>
1033                </atom>
1034                <atom serial="1777">
1035                   <atom-type> O3'</atom-type>
1036                      <coordinates>40.724 -35.051 0.999</coordinates>
1037                </atom>
1038             </base>
1039             <base>
1040                <position>84</position>
1041                <base-type>G</base-type>
1042                <atom serial="1789">
1043                   <atom-type> P  </atom-type>
1044                      <coordinates>39.499 -36.072 0.803</coordinates>
1045                </atom>
1046                <atom serial="1797">
1047                   <atom-type> O3'</atom-type>
1048                      <coordinates>35.976 -36.466 4.801</coordinates>
1049                </atom>
1050             </base>
1051             <base>
1052                <position>85</position>
1053                <base-type>C</base-type>
1054                <atom serial="1812">
1055                   <atom-type> P  </atom-type>
1056                      <coordinates>34.990 -37.680 4.429</coordinates>
1057                </atom>
1058                <atom serial="1820">
1059                   <atom-type> O3'</atom-type>
1060                      <coordinates>30.031 -37.549 5.509</coordinates>
1061                </atom>
1062             </base>
1063             <base>
1064                <position>86</position>
1065                <base-type>U</base-type>
1066                <atom serial="1832">
1067                   <atom-type> P  </atom-type>
1068                      <coordinates>29.628 -39.018 5.001</coordinates>
1069                </atom>
1070                <atom serial="1840">
1071                   <atom-type> O3'</atom-type>
1072                      <coordinates>25.142 -40.312 3.037</coordinates>
1073                </atom>
1074             </base>
1075             <base>
1076                <position>87</position>
1077                <base-type>C</base-type>
1078                <atom serial="1852">
1079                   <atom-type> P  </atom-type>
1080                      <coordinates>25.378 -41.854 2.656</coordinates>
1081                </atom>
1082                <atom serial="1860">
1083                   <atom-type> O3'</atom-type>
1084                      <coordinates>22.860 -43.926 -1.490</coordinates>
1085                </atom>
1086             </base>
1087             <base>
1088                <position>88</position>
1089                <base-type>C</base-type>
1090                <atom serial="1872">
1091                   <atom-type> P  </atom-type>
1092                      <coordinates>23.430 -45.414 -1.686</coordinates>
1093                </atom>
1094                <atom serial="1880">
1095                   <atom-type> O3'</atom-type>
1096                      <coordinates>24.098 -47.533 -6.370</coordinates>
1097                </atom>
1098             </base>
1099             <base>
1100                <position>89</position>
1101                <base-type>A</base-type>
1102                <atom serial="1892">
1103                   <atom-type> P  </atom-type>
1104                      <coordinates>24.738 -48.976 -6.070</coordinates>
1105                </atom>
1106                <atom serial="1900">
1107                   <atom-type> O3'</atom-type>
1108                      <coordinates>28.245 -51.062 -9.390</coordinates>
1109                </atom>
1110             </base>
1111             <str-annotation>
1112                <base-conformation>
1113                   <base-id><position>22</position></base-id>
1114                   <glycosyl>syn</glycosyl>
1115                </base-conformation>
1116                <base-conformation>
1117                   <base-id><position>68</position></base-id>
1118                   <glycosyl>syn</glycosyl>
1119                </base-conformation>
1120                <base-pair comment="?">
1121                   <base-id-5p>
1122                      <base-id><position>1</position></base-id>
1123                   </base-id-5p>
1124                   <base-id-3p>
1125                      <base-id><position>88</position></base-id>
1126                   </base-id-3p>
1127                   <edge-5p>+</edge-5p>
1128                   <edge-3p>+</edge-3p>
1129                   <bond-orientation>c</bond-orientation>
1130                </base-pair>
1131                <base-pair comment="?">
1132                   <base-id-5p>
1133                      <base-id><position>2</position></base-id>
1134                   </base-id-5p>
1135                   <base-id-3p>
1136                      <base-id><position>87</position></base-id>
1137                   </base-id-3p>
1138                   <edge-5p>+</edge-5p>
1139                   <edge-3p>+</edge-3p>
1140                   <bond-orientation>c</bond-orientation>
1141                </base-pair>
1142                <base-pair comment="?">
1143                   <base-id-5p>
1144                      <base-id><position>3</position></base-id>
1145                   </base-id-5p>
1146                   <base-id-3p>
1147                      <base-id><position>86</position></base-id>
1148                   </base-id-3p>
1149                   <edge-5p>-</edge-5p>
1150                   <edge-3p>-</edge-3p>
1151                   <bond-orientation>c</bond-orientation>
1152                </base-pair>
1153                <base-pair comment="?">
1154                   <base-id-5p>
1155                      <base-id><position>4</position></base-id>
1156                   </base-id-5p>
1157                   <base-id-3p>
1158                      <base-id><position>85</position></base-id>
1159                   </base-id-3p>
1160                   <edge-5p>+</edge-5p>
1161                   <edge-3p>+</edge-3p>
1162                   <bond-orientation>c</bond-orientation>
1163                </base-pair>
1164                <base-pair comment="?">
1165                   <base-id-5p>
1166                      <base-id><position>5</position></base-id>
1167                   </base-id-5p>
1168                   <base-id-3p>
1169                      <base-id><position>84</position></base-id>
1170                   </base-id-3p>
1171                   <edge-5p>W</edge-5p>
1172                   <edge-3p>W</edge-3p>
1173                   <bond-orientation>c</bond-orientation>
1174                </base-pair>
1175                <base-pair comment="?">
1176                   <base-id-5p>
1177                      <base-id><position>6</position></base-id>
1178                   </base-id-5p>
1179                   <base-id-3p>
1180                      <base-id><position>37</position></base-id>
1181                   </base-id-3p>
1182                   <edge-5p>S</edge-5p>
1183                   <edge-3p>H</edge-3p>
1184                   <bond-orientation>c</bond-orientation>
1185                </base-pair>
1186                <base-pair comment="?">
1187                   <base-id-5p>
1188                      <base-id><position>8</position></base-id>
1189                   </base-id-5p>
1190                   <base-id-3p>
1191                      <base-id><position>44</position></base-id>
1192                   </base-id-3p>
1193                   <edge-5p>S</edge-5p>
1194                   <edge-3p>S</edge-3p>
1195                   <bond-orientation>t</bond-orientation>
1196                </base-pair>
1197                <base-pair comment="?">
1198                   <base-id-5p>
1199                      <base-id><position>8</position></base-id>
1200                   </base-id-5p>
1201                   <base-id-3p>
1202                      <base-id><position>78</position></base-id>
1203                   </base-id-3p>
1204                   <edge-5p>H</edge-5p>
1205                   <edge-3p>S</edge-3p>
1206                   <bond-orientation>t</bond-orientation>
1207                </base-pair>
1208                <base-pair comment="?">
1209                   <base-id-5p>
1210                      <base-id><position>9</position></base-id>
1211                   </base-id-5p>
1212                   <base-id-3p>
1213                      <base-id><position>77</position></base-id>
1214                   </base-id-3p>
1215                   <edge-5p>W</edge-5p>
1216                   <edge-3p>W</edge-3p>
1217                   <bond-orientation>c</bond-orientation>
1218                </base-pair>
1219                <base-pair comment="?">
1220                   <base-id-5p>
1221                      <base-id><position>10</position></base-id>
1222                   </base-id-5p>
1223                   <base-id-3p>
1224                      <base-id><position>76</position></base-id>
1225                   </base-id-3p>
1226                   <edge-5p>-</edge-5p>
1227                   <edge-3p>-</edge-3p>
1228                   <bond-orientation>c</bond-orientation>
1229                </base-pair>
1230                <base-pair comment="?">
1231                   <base-id-5p>
1232                      <base-id><position>11</position></base-id>
1233                   </base-id-5p>
1234                   <base-id-3p>
1235                      <base-id><position>75</position></base-id>
1236                   </base-id-3p>
1237                   <edge-5p>-</edge-5p>
1238                   <edge-3p>-</edge-3p>
1239                   <bond-orientation>c</bond-orientation>
1240                </base-pair>
1241                <base-pair comment="?">
1242                   <base-id-5p>
1243                      <base-id><position>12</position></base-id>
1244                   </base-id-5p>
1245                   <base-id-3p>
1246                      <base-id><position>74</position></base-id>
1247                   </base-id-3p>
1248                   <edge-5p>+</edge-5p>
1249                   <edge-3p>+</edge-3p>
1250                   <bond-orientation>c</bond-orientation>
1251                </base-pair>
1252                <base-pair comment="?">
1253                   <base-id-5p>
1254                      <base-id><position>13</position></base-id>
1255                   </base-id-5p>
1256                   <base-id-3p>
1257                      <base-id><position>73</position></base-id>
1258                   </base-id-3p>
1259                   <edge-5p>-</edge-5p>
1260                   <edge-3p>-</edge-3p>
1261                   <bond-orientation>c</bond-orientation>
1262                </base-pair>
1263                <base-pair comment="?">
1264                   <base-id-5p>
1265                      <base-id><position>14</position></base-id>
1266                   </base-id-5p>
1267                   <base-id-3p>
1268                      <base-id><position>72</position></base-id>
1269                   </base-id-3p>
1270                   <edge-5p>-</edge-5p>
1271                   <edge-3p>-</edge-3p>
1272                   <bond-orientation>c</bond-orientation>
1273                </base-pair>
1274                <base-pair comment="?">
1275                   <base-id-5p>
1276                      <base-id><position>15</position></base-id>
1277                   </base-id-5p>
1278                   <base-id-3p>
1279                      <base-id><position>71</position></base-id>
1280                   </base-id-3p>
1281                   <edge-5p>-</edge-5p>
1282                   <edge-3p>-</edge-3p>
1283                   <bond-orientation>c</bond-orientation>
1284                </base-pair>
1285                <base-pair comment="?">
1286                   <base-id-5p>
1287                      <base-id><position>16</position></base-id>
1288                   </base-id-5p>
1289                   <base-id-3p>
1290                      <base-id><position>70</position></base-id>
1291                   </base-id-3p>
1292                   <edge-5p>+</edge-5p>
1293                   <edge-3p>+</edge-3p>
1294                   <bond-orientation>c</bond-orientation>
1295                </base-pair>
1296                <base-pair comment="?">
1297                   <base-id-5p>
1298                      <base-id><position>17</position></base-id>
1299                   </base-id-5p>
1300                   <base-id-3p>
1301                      <base-id><position>69</position></base-id>
1302                   </base-id-3p>
1303                   <edge-5p>W</edge-5p>
1304                   <edge-3p>W</edge-3p>
1305                   <bond-orientation>c</bond-orientation>
1306                </base-pair>
1307                <base-pair comment="?">
1308                   <base-id-5p>
1309                      <base-id><position>18</position></base-id>
1310                   </base-id-5p>
1311                   <base-id-3p>
1312                      <base-id><position>67</position></base-id>
1313                   </base-id-3p>
1314                   <edge-5p>+</edge-5p>
1315                   <edge-3p>+</edge-3p>
1316                   <bond-orientation>c</bond-orientation>
1317                </base-pair>
1318                <base-pair comment="?">
1319                   <base-id-5p>
1320                      <base-id><position>19</position></base-id>
1321                   </base-id-5p>
1322                   <base-id-3p>
1323                      <base-id><position>22</position></base-id>
1324                   </base-id-3p>
1325                   <edge-5p>S</edge-5p>
1326                   <edge-3p>S</edge-3p>
1327                   <bond-orientation>c</bond-orientation>
1328                </base-pair>
1329                <base-pair comment="?">
1330                   <base-id-5p>
1331                      <base-id><position>19</position></base-id>
1332                   </base-id-5p>
1333                   <base-id-3p>
1334                      <base-id><position>66</position></base-id>
1335                   </base-id-3p>
1336                   <edge-5p>+</edge-5p>
1337                   <edge-3p>+</edge-3p>
1338                   <bond-orientation>c</bond-orientation>
1339                </base-pair>
1340                <base-pair comment="?">
1341                   <base-id-5p>
1342                      <base-id><position>20</position></base-id>
1343                   </base-id-5p>
1344                   <base-id-3p>
1345                      <base-id><position>65</position></base-id>
1346                   </base-id-3p>
1347                   <edge-5p>W</edge-5p>
1348                   <edge-3p>W</edge-3p>
1349                   <bond-orientation>c</bond-orientation>
1350                </base-pair>
1351                <base-pair comment="?">
1352                   <base-id-5p>
1353                      <base-id><position>23</position></base-id>
1354                   </base-id-5p>
1355                   <base-id-3p>
1356                      <base-id><position>55</position></base-id>
1357                   </base-id-3p>
1358                   <edge-5p>H</edge-5p>
1359                   <edge-3p>W</edge-3p>
1360                   <bond-orientation>t</bond-orientation>
1361                </base-pair>
1362                <base-pair comment="?">
1363                   <base-id-5p>
1364                      <base-id><position>23</position></base-id>
1365                   </base-id-5p>
1366                   <base-id-3p>
1367                      <base-id><position>67</position></base-id>
1368                   </base-id-3p>
1369                   <edge-5p>W</edge-5p>
1370                   <edge-3p>S</edge-3p>
1371                   <bond-orientation>t</bond-orientation>
1372                </base-pair>
1373                <base-pair comment="?">
1374                   <base-id-5p>
1375                      <base-id><position>24</position></base-id>
1376                   </base-id-5p>
1377                   <base-id-3p>
1378                      <base-id><position>54</position></base-id>
1379                   </base-id-3p>
1380                   <edge-5p>H</edge-5p>
1381                   <edge-3p>S</edge-3p>
1382                   <bond-orientation>t</bond-orientation>
1383                </base-pair>
1384                <base-pair comment="?">
1385                   <base-id-5p>
1386                      <base-id><position>26</position></base-id>
1387                   </base-id-5p>
1388                   <base-id-3p>
1389                      <base-id><position>52</position></base-id>
1390                   </base-id-3p>
1391                   <edge-5p>W</edge-5p>
1392                   <edge-3p>W</edge-3p>
1393                   <bond-orientation>c</bond-orientation>
1394                </base-pair>
1395                <base-pair comment="?">
1396                   <base-id-5p>
1397                      <base-id><position>27</position></base-id>
1398                   </base-id-5p>
1399                   <base-id-3p>
1400                      <base-id><position>51</position></base-id>
1401                   </base-id-3p>
1402                   <edge-5p>-</edge-5p>
1403                   <edge-3p>-</edge-3p>
1404                   <bond-orientation>c</bond-orientation>
1405                </base-pair>
1406                <base-pair comment="?">
1407                   <base-id-5p>
1408                      <base-id><position>28</position></base-id>
1409                   </base-id-5p>
1410                   <base-id-3p>
1411                      <base-id><position>50</position></base-id>
1412                   </base-id-3p>
1413                   <edge-5p>+</edge-5p>
1414                   <edge-3p>+</edge-3p>
1415                   <bond-orientation>c</bond-orientation>
1416                </base-pair>
1417                <base-pair comment="?">
1418                   <base-id-5p>
1419                      <base-id><position>29</position></base-id>
1420                   </base-id-5p>
1421                   <base-id-3p>
1422                      <base-id><position>49</position></base-id>
1423                   </base-id-3p>
1424                   <edge-5p>-</edge-5p>
1425                   <edge-3p>-</edge-3p>
1426                   <bond-orientation>c</bond-orientation>
1427                </base-pair>
1428                <base-pair comment="?">
1429                   <base-id-5p>
1430                      <base-id><position>30</position></base-id>
1431                   </base-id-5p>
1432                   <base-id-3p>
1433                      <base-id><position>48</position></base-id>
1434                   </base-id-3p>
1435                   <edge-5p>+</edge-5p>
1436                   <edge-3p>+</edge-3p>
1437                   <bond-orientation>c</bond-orientation>
1438                </base-pair>
1439                <base-pair comment="?">
1440                   <base-id-5p>
1441                      <base-id><position>31</position></base-id>
1442                   </base-id-5p>
1443                   <base-id-3p>
1444                      <base-id><position>47</position></base-id>
1445                   </base-id-3p>
1446                   <edge-5p>-</edge-5p>
1447                   <edge-3p>-</edge-3p>
1448                   <bond-orientation>c</bond-orientation>
1449                </base-pair>
1450                <base-pair comment="?">
1451                   <base-id-5p>
1452                      <base-id><position>32</position></base-id>
1453                   </base-id-5p>
1454                   <base-id-3p>
1455                      <base-id><position>46</position></base-id>
1456                   </base-id-3p>
1457                   <edge-5p>+</edge-5p>
1458                   <edge-3p>+</edge-3p>
1459                   <bond-orientation>c</bond-orientation>
1460                </base-pair>
1461                <base-pair comment="?">
1462                   <base-id-5p>
1463                      <base-id><position>33</position></base-id>
1464                   </base-id-5p>
1465                   <base-id-3p>
1466                      <base-id><position>45</position></base-id>
1467                   </base-id-3p>
1468                   <edge-5p>-</edge-5p>
1469                   <edge-3p>-</edge-3p>
1470                   <bond-orientation>c</bond-orientation>
1471                </base-pair>
1472                <base-pair comment="?">
1473                   <base-id-5p>
1474                      <base-id><position>34</position></base-id>
1475                   </base-id-5p>
1476                   <base-id-3p>
1477                      <base-id><position>44</position></base-id>
1478                   </base-id-3p>
1479                   <edge-5p>W</edge-5p>
1480                   <edge-3p>W</edge-3p>
1481                   <bond-orientation>c</bond-orientation>
1482                </base-pair>
1483                <base-pair comment="?">
1484                   <base-id-5p>
1485                      <base-id><position>35</position></base-id>
1486                   </base-id-5p>
1487                   <base-id-3p>
1488                      <base-id><position>42</position></base-id>
1489                   </base-id-3p>
1490                   <edge-5p>W</edge-5p>
1491                   <edge-3p>H</edge-3p>
1492                   <bond-orientation>t</bond-orientation>
1493                </base-pair>
1494                <base-pair comment="?">
1495                   <base-id-5p>
1496                      <base-id><position>37</position></base-id>
1497                   </base-id-5p>
1498                   <base-id-3p>
1499                      <base-id><position>83</position></base-id>
1500                   </base-id-3p>
1501                   <edge-5p>+</edge-5p>
1502                   <edge-3p>+</edge-3p>
1503                   <bond-orientation>c</bond-orientation>
1504                </base-pair>
1505                <base-pair comment="?">
1506                   <base-id-5p>
1507                      <base-id><position>38</position></base-id>
1508                   </base-id-5p>
1509                   <base-id-3p>
1510                      <base-id><position>82</position></base-id>
1511                   </base-id-3p>
1512                   <edge-5p>+</edge-5p>
1513                   <edge-3p>+</edge-3p>
1514                   <bond-orientation>c</bond-orientation>
1515                </base-pair>
1516                <base-pair comment="?">
1517                   <base-id-5p>
1518                      <base-id><position>39</position></base-id>
1519                   </base-id-5p>
1520                   <base-id-3p>
1521                      <base-id><position>81</position></base-id>
1522                   </base-id-3p>
1523                   <edge-5p>-</edge-5p>
1524                   <edge-3p>-</edge-3p>
1525                   <bond-orientation>c</bond-orientation>
1526                </base-pair>
1527                <base-pair comment="?">
1528                   <base-id-5p>
1529                      <base-id><position>40</position></base-id>
1530                   </base-id-5p>
1531                   <base-id-3p>
1532                      <base-id><position>80</position></base-id>
1533                   </base-id-3p>
1534                   <edge-5p>-</edge-5p>
1535                   <edge-3p>-</edge-3p>
1536                   <bond-orientation>c</bond-orientation>
1537                </base-pair>
1538                <base-pair comment="?">
1539                   <base-id-5p>
1540                      <base-id><position>41</position></base-id>
1541                   </base-id-5p>
1542                   <base-id-3p>
1543                      <base-id><position>79</position></base-id>
1544                   </base-id-3p>
1545                   <edge-5p>W</edge-5p>
1546                   <edge-3p>W</edge-3p>
1547                   <bond-orientation>c</bond-orientation>
1548                </base-pair>
1549                <base-pair comment="?">
1550                   <base-id-5p>
1551                      <base-id><position>56</position></base-id>
1552                   </base-id-5p>
1553                   <base-id-3p>
1554                      <base-id><position>65</position></base-id>
1555                   </base-id-3p>
1556                   <edge-5p>S</edge-5p>
1557                   <edge-3p>S</edge-3p>
1558                   <bond-orientation>t</bond-orientation>
1559                </base-pair>
1560                <base-pair comment="?">
1561                   <base-id-5p>
1562                      <base-id><position>57</position></base-id>
1563                   </base-id-5p>
1564                   <base-id-3p>
1565                      <base-id><position>64</position></base-id>
1566                   </base-id-3p>
1567                   <edge-5p>+</edge-5p>
1568                   <edge-3p>+</edge-3p>
1569                   <bond-orientation>c</bond-orientation>
1570                </base-pair>
1571                <base-pair comment="?">
1572                   <base-id-5p>
1573                      <base-id><position>58</position></base-id>
1574                   </base-id-5p>
1575                   <base-id-3p>
1576                      <base-id><position>63</position></base-id>
1577                   </base-id-3p>
1578                   <edge-5p>+</edge-5p>
1579                   <edge-3p>+</edge-3p>
1580                   <bond-orientation>c</bond-orientation>
1581                </base-pair>
1582                <base-pair comment="?">
1583                   <base-id-5p>
1584                      <base-id><position>59</position></base-id>
1585                   </base-id-5p>
1586                   <base-id-3p>
1587                      <base-id><position>62</position></base-id>
1588                   </base-id-3p>
1589                   <edge-5p>W</edge-5p>
1590                   <edge-3p>H</edge-3p>
1591                   <bond-orientation>t</bond-orientation>
1592                </base-pair>
1593                <base-pair comment="?">
1594                   <base-id-5p>
1595                      <base-id><position>7</position></base-id>
1596                   </base-id-5p>
1597                   <base-id-3p>
1598                      <base-id><position>35</position></base-id>
1599                   </base-id-3p>
1600                   <edge-5p>!</edge-5p>
1601                   <edge-3p>!</edge-3p>
1602                   <bond-orientation>!</bond-orientation>
1603                </base-pair>
1604                <base-pair comment="?">
1605                   <base-id-5p>
1606                      <base-id><position>8</position></base-id>
1607                   </base-id-5p>
1608                   <base-id-3p>
1609                      <base-id><position>35</position></base-id>
1610                   </base-id-3p>
1611                   <edge-5p>!</edge-5p>
1612                   <edge-3p>!</edge-3p>
1613                   <bond-orientation>!</bond-orientation>
1614                </base-pair>
1615                <base-pair comment="?">
1616                   <base-id-5p>
1617                      <base-id><position>23</position></base-id>
1618                   </base-id-5p>
1619                   <base-id-3p>
1620                      <base-id><position>54</position></base-id>
1621                   </base-id-3p>
1622                   <edge-5p>!</edge-5p>
1623                   <edge-3p>!</edge-3p>
1624                   <bond-orientation>!</bond-orientation>
1625                </base-pair>
1626                <base-pair comment="?">
1627                   <base-id-5p>
1628                      <base-id><position>24</position></base-id>
1629                   </base-id-5p>
1630                   <base-id-3p>
1631                      <base-id><position>69</position></base-id>
1632                   </base-id-3p>
1633                   <edge-5p>!</edge-5p>
1634                   <edge-3p>!</edge-3p>
1635                   <bond-orientation>!</bond-orientation>
1636                </base-pair>
1637                <base-pair comment="?">
1638                   <base-id-5p>
1639                      <base-id><position>35</position></base-id>
1640                   </base-id-5p>
1641                   <base-id-3p>
1642                      <base-id><position>79</position></base-id>
1643                   </base-id-3p>
1644                   <edge-5p>!</edge-5p>
1645                   <edge-3p>!</edge-3p>
1646                   <bond-orientation>!</bond-orientation>
1647                </base-pair>
1648                <base-pair comment="?">
1649                   <base-id-5p>
1650                      <base-id><position>43</position></base-id>
1651                   </base-id-5p>
1652                   <base-id-3p>
1653                      <base-id><position>44</position></base-id>
1654                   </base-id-3p>
1655                   <edge-5p>!</edge-5p>
1656                   <edge-3p>!</edge-3p>
1657                   <bond-orientation>!</bond-orientation>
1658                </base-pair>
1659                <base-pair comment="?">
1660                   <base-id-5p>
1661                      <base-id><position>54</position></base-id>
1662                   </base-id-5p>
1663                   <base-id-3p>
1664                      <base-id><position>55</position></base-id>
1665                   </base-id-3p>
1666                   <edge-5p>!</edge-5p>
1667                   <edge-3p>!</edge-3p>
1668                   <bond-orientation>!</bond-orientation>
1669                </base-pair>
1670                <base-pair comment="?">
1671                   <base-id-5p>
1672                      <base-id><position>56</position></base-id>
1673                   </base-id-5p>
1674                   <base-id-3p>
1675                      <base-id><position>57</position></base-id>
1676                   </base-id-3p>
1677                   <edge-5p>!</edge-5p>
1678                   <edge-3p>!</edge-3p>
1679                   <bond-orientation>!</bond-orientation>
1680                </base-pair>
1681                <base-pair comment="?">
1682                   <base-id-5p>
1683                      <base-id><position>68</position></base-id>
1684                   </base-id-5p>
1685                   <base-id-3p>
1686                      <base-id><position>69</position></base-id>
1687                   </base-id-3p>
1688                   <edge-5p>!</edge-5p>
1689                   <edge-3p>!</edge-3p>
1690                   <bond-orientation>!</bond-orientation>
1691                </base-pair>
1692                <helix id="H1">
1693                   <base-id-5p>
1694                      <base-id><position>1</position></base-id>
1695                   </base-id-5p>
1696                   <base-id-3p>
1697                      <base-id><position>88</position></base-id>
1698                   </base-id-3p>
1699                   <length>5</length>
1700                </helix>
1701                <helix id="H2">
1702                   <base-id-5p>
1703                      <base-id><position>37</position></base-id>
1704                   </base-id-5p>
1705                   <base-id-3p>
1706                      <base-id><position>83</position></base-id>
1707                   </base-id-3p>
1708                   <length>5</length>
1709                </helix>
1710                <helix id="H3">
1711                   <base-id-5p>
1712                      <base-id><position>26</position></base-id>
1713                   </base-id-5p>
1714                   <base-id-3p>
1715                      <base-id><position>52</position></base-id>
1716                   </base-id-3p>
1717                   <length>9</length>
1718                </helix>
1719                <helix id="H4">
1720                   <base-id-5p>
1721                      <base-id><position>23</position></base-id>
1722                   </base-id-5p>
1723                   <base-id-3p>
1724                      <base-id><position>55</position></base-id>
1725                   </base-id-3p>
1726                   <length>2</length>
1727                </helix>
1728                <helix id="H5">
1729                   <base-id-5p>
1730                      <base-id><position>57</position></base-id>
1731                   </base-id-5p>
1732                   <base-id-3p>
1733                      <base-id><position>64</position></base-id>
1734                   </base-id-3p>
1735                   <length>3</length>
1736                </helix>
1737                <helix id="H6">
1738                   <base-id-5p>
1739                      <base-id><position>19</position></base-id>
1740                   </base-id-5p>
1741                   <base-id-3p>
1742                      <base-id><position>66</position></base-id>
1743                   </base-id-3p>
1744                   <length>2</length>
1745                </helix>
1746                <helix id="H7">
1747                   <base-id-5p>
1748                      <base-id><position>8</position></base-id>
1749                   </base-id-5p>
1750                   <base-id-3p>
1751                      <base-id><position>78</position></base-id>
1752                   </base-id-3p>
1753                   <length>10</length>
1754                </helix>
1755                <single-strand>
1756                   <segment>
1757                      <seg-name>SG1</seg-name>
1758                      <base-id-5p><base-id><position>6</position></base-id></base-id-5p>
1759                      <base-id-3p><base-id><position>7</position></base-id></base-id-3p>
1760                   </segment>
1761                </single-strand>
1762                <single-strand>
1763                   <segment>
1764                      <seg-name>SG2</seg-name>
1765                      <base-id-5p><base-id><position>18</position></base-id></base-id-5p>
1766                      <base-id-3p><base-id><position>18</position></base-id></base-id-3p>
1767                   </segment>
1768                </single-strand>
1769                <single-strand>
1770                   <segment>
1771                      <seg-name>SG3</seg-name>
1772                      <base-id-5p><base-id><position>21</position></base-id></base-id-5p>
1773                      <base-id-3p><base-id><position>22</position></base-id></base-id-3p>
1774                   </segment>
1775                </single-strand>
1776                <single-strand>
1777                   <segment>
1778                      <seg-name>SG4</seg-name>
1779                      <base-id-5p><base-id><position>25</position></base-id></base-id-5p>
1780                      <base-id-3p><base-id><position>25</position></base-id></base-id-3p>
1781                   </segment>
1782                </single-strand>
1783                <single-strand>
1784                   <segment>
1785                      <seg-name>SG5</seg-name>
1786                      <base-id-5p><base-id><position>35</position></base-id></base-id-5p>
1787                      <base-id-3p><base-id><position>36</position></base-id></base-id-3p>
1788                   </segment>
1789                </single-strand>
1790                <single-strand>
1791                   <segment>
1792                      <seg-name>SG6</seg-name>
1793                      <base-id-5p><base-id><position>42</position></base-id></base-id-5p>
1794                      <base-id-3p><base-id><position>43</position></base-id></base-id-3p>
1795                   </segment>
1796                </single-strand>
1797                <single-strand>
1798                   <segment>
1799                      <seg-name>SG7</seg-name>
1800                      <base-id-5p><base-id><position>53</position></base-id></base-id-5p>
1801                      <base-id-3p><base-id><position>53</position></base-id></base-id-3p>
1802                   </segment>
1803                </single-strand>
1804                <single-strand>
1805                   <segment>
1806                      <seg-name>SG8</seg-name>
1807                      <base-id-5p><base-id><position>56</position></base-id></base-id-5p>
1808                      <base-id-3p><base-id><position>56</position></base-id></base-id-3p>
1809                   </segment>
1810                </single-strand>
1811                <single-strand>
1812                   <segment>
1813                      <seg-name>SG9</seg-name>
1814                      <base-id-5p><base-id><position>60</position></base-id></base-id-5p>
1815                      <base-id-3p><base-id><position>61</position></base-id></base-id-3p>
1816                   </segment>
1817                </single-strand>
1818                <single-strand>
1819                   <segment>
1820                      <seg-name>SG10</seg-name>
1821                      <base-id-5p><base-id><position>67</position></base-id></base-id-5p>
1822                      <base-id-3p><base-id><position>68</position></base-id></base-id-3p>
1823                   </segment>
1824                </single-strand>
1825                <single-strand>
1826                   <segment>
1827                      <seg-name>SG11</seg-name>
1828                      <base-id-5p><base-id><position>89</position></base-id></base-id-5p>
1829                      <base-id-3p><base-id><position>89</position></base-id></base-id-3p>
1830                   </segment>
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1972                   <coordinates>287.476 124.764</coordinates>
1973                </ss-base-coord>
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1976                   <coordinates>276.134 124.764</coordinates>
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2012                   <coordinates>264.792 257.089</coordinates>
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2014                <ss-base-coord>
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2016                   <coordinates>264.792 275.992</coordinates>
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2020                   <coordinates>264.792 294.896</coordinates>
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2191          </model>
2192       </structure>
2193    </molecule>
2194
2195
2196    <interactions>
2197             <str-annotation>
2198             </str-annotation>
2199    </interactions>
2200 </rnaml>