examples/testdata/test_combine_annot.jva

   1 #Comment lines follow the hash symbol
   2 JALVIEW_ANNOTATION
   3 SEQUENCE_REF    FER1_MESCR      5
   4 BAR_GRAPH       Bar Graph 1     <html>an <em>html tooltip</em> for Bar graph 1.</html>  ||-100,-|-200,-|-300,-|-400,-|200,+|300,+|150,+
   5 LINE_GRAPH      Green Values    1.1|2.2|1.3|3.4|0.7|1.4|3.3|2.2|2.1|-1.1|3.2
   6 LINE_GRAPH      Red Values      2.1|3.2|1.3|-1.4|5.5|1.4|1.3|4.2|-1.1|1.1|3.2
   7 LINE_GRAPH      Blue Values     0|0|0|1.1|2.2|1.3|3.4|0.7|1.4|3.3|2.2
   8 LINE_GRAPH      Yellow Values   3.0|3.0|3.0|2.1|3.2|1.3|-1.4|5.5|1.4|1.3|4.2
   9
  10 BAR_GRAPH       Bar Graph       2 1,.|2,*|3,:|4,.|5,*|4,:|3,.|2|1|1|2|3|4|5|4
  11
  12 NO_GRAPH        Icons   ||||E,Sheet1|E|E||||H,Sheet 2|H|H|H||||||
  13 NO_GRAPH        Purple Letters  m|y|p|r|o|t|e|i|n
  14 COLOUR  Bar Graph 2     blue
  15 COLOUR  Red Values      255,0,0
  16 COLOUR  Green Values    green
  17 COLOUR  Blue Values     blue
  18 COLOUR  Yellow Values   yellow
  19 COLOUR  Purple Letters  151,52,228
  20
  21 COMBINE Green Values    Red Values
  22 COMBINE Blue Values     Yellow Values
  23
  24 GRAPHLINE       Red Values      2.6     threshold       black
  25
  26 SEQUENCE_GROUP  Group_A 30      50      *
  27 SEQUENCE_GROUP  Group_B 1       351     2-5
  28 SEQUENCE_GROUP  Group_C 12      14      -1      seq1    seq2    seq3
  29 PROPERTIES      Group_A description=This is the description     colour=Helix Propensity pidThreshold=0  outlineColour=red       displayBoxes=true       displayText=false       colourText=false        textCol1=black  textCol2=black  textColThreshold=0
  30 PROPERTIES      Group_B outlineColour=red
  31 PROPERTIES      Group_C colour=Clustal