JAL-3032 SwingJS-site.zip for wrong case in filename in site/
[jalview.git] / examples / unfolded_RF00031.aln
1 CLUSTAL
2
3 B.taurus.1/1-64       C-UUGCGUU--AAUGAGAACAGAAACG-UAAA--CUAUAA-CCUAG-G---------GGU
4 D.melanogaster.3/1-68 G-UGGCGCU--UAUGACGCAGUUGUCU-UAAA-CUCGAAC--UCGA-GC--------GGG
5 D.melanogaster.2/1-63 C-AUUCAACU-UAUGAGGAUUAUUUCU-UAAA-GGCCUCU---GGC--U-------CGGA
6 D.melanogaster.1/1-65 G-AGCC-CU---AUGAUCGAUGAUUGG-CAAA-UCCUCUC--GAGG--A-------ACCG
7 R.norvegicus.7/1-66   C-CGGCACU--CAUGACGGUCUGCCUG-AAAA-CCAGCCC--GCUG-GU--------GGG
8 R.norvegicus.6/1-67   G-CCGCUUC---AUGACAGGAAGGACU-GAAA-UGUCUCA-AAGAC--C-----UGUGGU
9 R.norvegicus.5/1-62   G-UUUUUCC---AUGACGGUGUUUCCUCUAAA--UUUAC----AUG-----------GAG
10 R.norvegicus.4/1-61   G-UCAGAUG---AUGACGGCCUGUGCA-GAAA-CCCCCAC-GUGGG--C--------UGC
11 R.norvegicus.3/1-67   U-UUGCAUU--AAUGAGGAUUACACAG-AAAA-CCUUUGU--UAAGGGU--------UUG
12 R.norvegicus.2/1-64   G-UUACAUU--GAUGAGAACAGAAACA-UAAA--CUAUGA-CCUAG-G---------GGU
13 R.norvegicus.1/1-61   A-UAUUUGUU-UAUGAUGGUCACAGUG-UAAA--GUUCA----CAC-----------AGC
14 O.aries.1/1-68        G-ACGCUUC---AUGACAGGAAGGACU-GAAA-UGUCUCU-UGGAC-GC------CUGGU
15 M.musculus.9/1-66     C-CGGCACU--CAUGAAGGUCUGCUUG-AAAA-CCAGCCU--GCUG-GU--------GGG
16 M.musculus.8/1-67     U-UUGCAUU--AAUGAGGAUUACACAG-AAAA-CCUUUGU--UAAG-GA-------CUUG
17 O.niloticus.3/1-65    G-UGUCUCU---GUGAAGUUCGGUUUU-UAAA-AGGGUCA---UCC--A-------GAAA
18 M.musculus.7/1-64     G-UGUCUCU---AUGAAGGAGGGGCCC-GAAG-CCCUUGU---GGG--C--------GGG
19 O.niloticus.2/1-61    U-GUUUAUU--AAUGACGGCUACAGAU-UAAA--CCUUU----AGC-----------CUC
20 M.musculus.6/1-61     G-UCAGAUG---AUGAUGGCCUGGGCA-GAAA-CCCCAUG--UGGG--C--------CGC
21 O.niloticus.1/1-59    G-UUUCUCA---GUGAAGGCUACAGAU-UAAA--CCUCU----GGC-----------CUC
22 M.musculus.5/1-66     G-CCGCUUC---AUGACAGGAAGGACU-GAAA-UGUCUUA---GAC--C-----UGUGGU
23 M.musculus.4/1-65     G-UGUGCGA---AUGAUAACUACUGAC-GAAA-GAGCUGU-CUGCU--C-------AGUC
24 M.musculus.3/1-64     G-GUUCUUC--CAUGAUGGUGUUUCCUCUAAA--UUUGC----ACG-----------GAG
25 M.musculus.2/1-64     G-UUACAUU--AAUGAGAACAGAAACA-UAAA--CUAUGA-CCUAG-G---------GGU
26 M.musculus.1/1-64     G-UCACCGA---AUGAUCUGCUCUGGU-CAAA-UCCUUCU---AUG--C------CAGCC
27 C.elegans.1/1-64      G-AGGCAGCUUUGUGACGACCUUUGGC-UAAA-CUCCAUC--GUGA-GC--------GCC
28 H.sapiens.15/1-63     U-UUUCAUC--UAUGAGGGUGUUUCCUCUAAA--CCUACG---AGG-----------GAG
29 H.sapiens.14/1-62     C-ACUGCUG---AUGACGAACUAUCUC-UAAC-UGGUCUU--GACC--A-------CGAG
30 H.sapiens.13/1-64     G-UCACUGC---AUGAUCCGCUCUGGU-CAAA-CCCUUCC---AGG--C------CAGCC
31 H.sapiens.12/1-67     C-UCUGUUA---AUGACGUCUCUCCCUCUAAA-CCCCAUU-AAGGA--C--------UGG
32 D.rerio.1/1-66        A-UGUGGUCUUUAUGAAGGCAGGUGCA-GAAA-CUAUGCA---CUA-GU--------GGU
33 H.sapiens.11/1-63     G-CCGGAUG---AUGACGACCUGGGUG-GAAA-CCUACCC-UGUGG--G--------CAC
34 H.sapiens.10/1-62     C-CGGCACU--CAUGACGGCCUGCCUG-CAAA--CCUGC----UGG--U--------GGG
35 S.mansoni.1/1-67      C-UCGCUAU---AUGACGAUGGCAAUC-UCAA--AUGUU----CAU--U--------GGU
36 S.scrofa.4/1-64       C-UGGCACC--CAUGACAGUCUGCCUA-AAAA-CCAGCC----CUG-GU--------GGG
37 S.scrofa.3/1-63       A-UUUUAUC--CAUGAAAGUGUUUCCUCUAAA--CCUAU----GUG-----------GAG
38 S.scrofa.2/1-65       C-UGGCACC--CAUGACAGUCUGCCUA-AAAA-CCAGCCC---CUG-GU--------GGG
39 S.scrofa.1/1-68       G-ACGCUUC---AUGACAGGAAGGACU-GAAA-UGUCUUG-UGGAC-GC------CUGGU
40 H.sapiens.9/1-58      U-AUUUGUU--UAUGAUGGCCACAGCC-UAAA--GUACA----CAC-----------GGC
41 H.sapiens.8/1-67      U-UUGCUUU--AAUGAGAAUAGAAACG-UAAA--CUAUGA-CCUAG-G---------GGU
42 X.laevis.1/1-67       G-UGUUUGCA-AAUGACGACCGAUUUU-GAAA-UGGUCUCACGGCC--A-------AAAA
43 H.sapiens.7/1-70      U-GGCGUCUU-CAUGAGGGAGGGGCCC--AAA-GCCCUUG--UGGG--C--------GGA
44 H.sapiens.6/1-66      G-UGUGCGG---AUGAUAACUACUGAC-GAAAGAGUCAUC---GAC--C-----UCAGUU
45 H.sapiens.5/1-57      U-UCACAGA---AUGAUGGCACCUUCC-UAA---ACCCU----CAU-----------GGG
46 H.sapiens.4/1-71      G-ACUGACAU-UAUGAAGGCCUGUACU-GAAG-ACAGCAA--GCUG--U-------UAGU
47 H.sapiens.3/1-68      G-ACGCUUC---AUGAUAGGAAGGACU-GAAA-AGUCUUG-UGGAC--A-----CCUGGU
48 H.sapiens.2/1-65      G-UGUGCGG---AUGAUAACUACUGAC-GAAA-GAGUCAU-CGACU--C-------AGUU
49 H.sapiens.1/1-63      G-CCAGAUG---AUGACGACCUGGGUG-GAAA-CCUACCC-UGUGG--G--------CAC
50 M.musculus.14/1-67    C-UCUGAUA---AUGAUGUCUCUCCCU-CUAA-CUCCCAGUAAGGA--C--------UGG
51 M.musculus.13/1-60    C-AUGCGUC--CAUGAAGUCACUGGCC-UCAA-GCCCAA----GUG-GU--------GGG
52 M.musculus.12/1-65    C-UCAGCAG--GAUGAUGAGAAGGGCU-GAAA-UGCUGCC--AAAC--C-------AGGU
53 M.musculus.11/1-63    U-AUUUGUG--UAUGAUGGUCACAGUG-UAAA--GUUCC----CAC-----------AGC
54 M.musculus.10/1-66    C-CGGCACU--CAUGAAGGUCUGCCUG-AAAA-CCAGCCU--GCUG-GU--------GGG
55 B.taurus.7/1-61       U-UUUGCCC---AUGAAGGUGUUCCCUCUAAA--CCUAC----GUG-----------GAG
56 B.taurus.6/1-67       G-AUGCGUC--CAUGAAGUCACCAGCC-CCAA-GCCCCUC---GUG-GU--------GGG
57 B.taurus.5/1-61       G-CCAGAUG---AUGAGGACCUGUGCG-GAAA-CCCCCCG--CGGG--C--------UGC
58 B.taurus.4/1-64       ACUUGCGUU--AAUGAGAACAGAAACG-UAAA--CUAUAA-CCUAG-G---------GGU
59 G.gallus.3/1-73       U-AUUUCUU--UGUGAUGACCGAUUUU-GAAA-UGGGUUU---CUC--UAAUGCCAGGAA
60 B.taurus.3/1-66       C-CCGGUGCC-UAUGACGGUCUGUCUG-AAAA-CCAGCCC---CUG-GU--------GGG
61 G.gallus.2/1-60       U-AUUUGUC---AUGACAGUCACAGCA-UAAA--GCGCA----GAC-----------GGC
62 B.taurus.2/1-64       C-UUGCGUU--AAUGAGAACAGAAACG-AAAA--CUAUAA-CCUAG-G---------GGU
63 G.gallus.1/1-63       G-UGUGUUU---AUGAAGAGCACUAAC-AAAA-GAGUAAU-UGACU--C-------AGUU
64
65 B.taurus.1/1-64       UUC-U-G-UUGGAU--GGUUG-------GCAAC
66 D.melanogaster.3/1-68 CAA-U-U-GCUGAU---UACG---AUUAACCAC
67 D.melanogaster.2/1-63 AAU-A-G-UCUGAA---CCU--------UAUUG
68 D.melanogaster.1/1-65 AUC-G-U-UGAGAA--CCCCU-----UUGCCUU
69 R.norvegicus.7/1-66   GCA-G-U-CCCGAG-GACCUG-------GCGUG
70 R.norvegicus.6/1-67   CUU-U-C-UUCGAU--GUUCU-------GCGGC
71 R.norvegicus.5/1-62   AAA-C-A-CCUGAU-UUCCAG------AAAAAU
72 R.norvegicus.4/1-61   -CA-G-G-UUUGAA---CCC--------CUGGC
73 R.norvegicus.3/1-67   UGUCG-A-UCUGCU--AAUUG-------GCAAA
74 R.norvegicus.2/1-64   UUC-U-G-UUGGAU--AGCUC-------GUAAU
75 R.norvegicus.1/1-61   UGU-G-A-CUUGAU--UUUUA-------AAAAU
76 O.aries.1/1-68        CCU-U-C-CUUGAU--GUUCU------CACGGC
77 M.musculus.9/1-66     GCA-G-U-CCUGAG-GACCUG-------GCGUG
78 M.musculus.8/1-67     UGU-AGA-UCUGAU--AAUUG-------GCAAA
79 O.niloticus.3/1-65    ACC-G-ACACUGAU--GUUUC------CGACAC
80 M.musculus.7/1-64     CCU-C-C-CCUGAG---CCCG----UCUGUGGU
81 O.niloticus.2/1-61    UGG-A-G-CCAGAU--GCAUU------CAAACA
82 M.musculus.6/1-61     CCA-G-G-UUUGAA---CCC--------CUGGC
83 O.niloticus.1/1-59    UGG-A-G-CCAGAU--GCAUU-------GAAAC
84 M.musculus.5/1-66     CUU-U-C-CUCGAU--GUUCC------UGCGGC
85 M.musculus.4/1-65     UGU-G-G-UUGGAU---GUAG------UCACAC
86 M.musculus.3/1-64     AAA-C-A-CCUGAU-UUCCAG-----GAAAAUC
87 M.musculus.2/1-64     UUC-U-G-UUGGAU--AGCUU-------GUAAU
88 M.musculus.1/1-64     AGG-G-U-GGUGAU--GACCC-------GUGAC
89 C.elegans.1/1-64      UCU-G-G-UCUGAU---GC---------GCCUC
90 H.sapiens.15/1-63     GAA-C-A-CCUGAU---CUUA-----CAGAAAA
91 H.sapiens.14/1-62     CUA-G-U-UCUGAA---UU-G-------CAGGG
92 H.sapiens.13/1-64     AGA-G-U-GGGGAU--GGUCU-------GUGAC
93 H.sapiens.12/1-67     GAG-A-G-GCAGAGCAAGCCU-------CAGAG
94 D.rerio.1/1-66        GUC-U-G-UCUGAU--GUUUG-------GCCAU
95 H.sapiens.11/1-63     CCA-U-G-UCCGAG---CCCC-------CUGGC
96 H.sapiens.10/1-62     GCA-G-A-CCCGAA-AAUCCA-------GCGUG
97 S.mansoni.1/1-67      UGC-C-A-UUUGAU--GAAAUCAGUUUUGUGUG
98 S.scrofa.4/1-64       GCA-G-A-CUCGAG-AACCUG-------GCGUG
99 S.scrofa.3/1-63       GAA-C-A-CCUGAU-GUCCAG------GAAAAU
100 S.scrofa.2/1-65       GCA-G-A-CUCGAG-AACCUG-------GCGUG
101 S.scrofa.1/1-68       CCU-U-C-CCUGAU--GUUCU------CAUGGC
102 H.sapiens.9/1-58      UGU-G-A-CUUGAU---UCA--------AAAGA
103 H.sapiens.8/1-67      UUC-U-G-UUGGAU-AAUUAG-----CAGUUUA
104 X.laevis.1/1-67       CUC-GUG-UCCGAC---AUC--------AACCC
105 H.sapiens.7/1-70      CCU-C-C-CCUGAG---CCUGUCUGAGGGGCCA
106 H.sapiens.6/1-66      AGU-G-G-UUGGAU---GUAG------UCACAU
107 H.sapiens.5/1-57      UGG-U-G-UCUGAG--AGGC--------GUGAA
108 H.sapiens.4/1-71      ACA-G-A-CCAGAU--GCUUU--CUUGGCAGGC
109 H.sapiens.3/1-68      CUU-U-C-CCUGAU--GUUCU------CGUGGC
110 H.sapiens.2/1-65      AGU-G-G-UUGGAU---GUAG------UCACAU
111 H.sapiens.1/1-63      CCA-U-G-UCCGAG---CCCC-------CUGGC
112 M.musculus.14/1-67    GAG-A-G-GCUGAACAAACCU-------CAGAG
113 M.musculus.13/1-60    CAG-U-G-ACAGAA---GA---------GCUGC
114 M.musculus.12/1-65    CCU-U-U-UCUGAU--GGUGG-------CUGGG
115 M.musculus.11/1-63    UGU-G-A-CUUGAU--UUUUA----AAAAUGUC
116 M.musculus.10/1-66    GCA-G-U-CCUGAG-GACCUG-------GCGUG
117 B.taurus.7/1-61       GAA-U-G-CCUGAU-GUCCAG-------GAAAA
118 B.taurus.6/1-67       UGG-U-G-AUGGAA-CCGUCA-----AAGCAGU
119 B.taurus.5/1-61       CCA-U-G-UCUGAG---CCC--------CUGGC
120 B.taurus.4/1-64       UUC-U-G-UUGGAU--GGUUG-------GCAA-
121 G.gallus.3/1-73       AUC-GUG-UCUGAU---GUUG-----UCAAGUA
122 B.taurus.3/1-66       GCA-G-A-CCUGAG-AACCUG-------GCGUG
123 G.gallus.2/1-60       UGU-G-A-CCUGAU--UUUAG------AAAAUA
124 B.taurus.2/1-64       UUC-U-G-UUGGAU--GGUUG-------GCAAC
125 G.gallus.1/1-63       GGU-G-U-UCAGAU--GCU---------CUCAC
126