examples-jbake/templates/jvl_embedded.ftl

   1 <h2>Embedded viewing of Alignments</h2>
   2 <p>The alignment below was generated from the following files:
   3   <ul>
   4     <li><a href="plantfdx.fa">plantfdx.fa</a> - Alignment file in
   5       FASTA format</li>
   6     <li><a href="plantfdx.features">plantfdx.features</a> - Jalview
   7       Format Sequence Features file</li>
   8     <li><a href="plantfdx.annotations">plantfdx.annotations</a> -
   9       Jalview Alignment Annotations File</li>
  10   </ul>
  11   <@jvlitebutton appjar="${content.jvl}" width=756 height=560
  12                  params={
  13                  "file":"plantfdx.fa",
  14                  "annotations":"plantfdx.annotations",
  15                  "features":"plantfdx.features",
  16                  "embedded":"true",
  17                  "userDefinedColour":"C=yellow; R,K,H=FF5555; D,E=5555FF",
  18                  "showFullId":"false"} />
  19 </p>