2 <head><title>Sequence Features</title></head>
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4 <p><strong>Sequence Features</strong></p>
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5 <p>This displays Uniprot sequence features on the alignment if a 100% sequence
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7 <p>The first step in this process is to match the id (name) of each sequence with
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8 Uniprot. If there is no match, a Blast search is performed to try to obtain
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9 the Uniprot Id for each sequence. You will be notified of any 100% matches with
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10 Uniprot, which you must manually assign to each sequence in your input alignment,
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11 then save the file.</p>
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13 The input sequence will be matched with the returned Uniprot record, the start
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14 and end residues can then be correctly assigned to each sequence. </p>
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15 <p>Sequence features which are 1 residue in length are coloured red. Features
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16 which span a region are coloured blue. </p>
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17 <p>By moving the mouse pointer over a sequence feature on the alignment a small
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18 label will appear with the description of that sequence feature.</p>
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19 <p>A local cache of retrieved uniprot entries is recorded on your local machine.
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