forester/aptx/aptx_example_files/0_test_1.xml

   1 <?xml version="1.0" encoding="UTF-8"?>
   2 <phyloxml xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.phyloxml.org http://www.phyloxml.org/1.10/phyloxml.xsd" xmlns="http://www.phyloxml.org">
   3 <phylogeny rooted="true" rerootable="false">
   4   <clade>
   5     <clade>
   6       <clade>
   7         <clade>
   8           <clade>
   9             <clade>
  10               <clade>
  11                 <clade>
  12                   <clade>
  13                     <clade>
  14                       <clade>
  15                         <clade>
  16                           <clade>
  17                             <name>NP_001025424.1</name>
  18                             <taxonomy>
  19                             </taxonomy>
  20                           </clade>
  21                           <clade>
  22                             <name>NM_001030253</name>
  23                             <taxonomy>
  24                             </taxonomy>
  25                           </clade>
  26                         </clade>
  27                         <clade>
  28                           <clade>
  29                             <name>BCL2_HUMAN</name>
  30                             <taxonomy>
  31                             </taxonomy>
  32                           </clade>
  33                           <clade>
  34                             <name>P10415</name>
  35                           </clade>
  36                         </clade>
  37                       </clade>
  38                       <clade>
  39                         <name>AY695820</name>
  40                         <taxonomy>
  41                         </taxonomy>
  42                       </clade>
  43                     </clade>
  44                     <clade>
  45                       <taxonomy>
  46                         <code>XENLA</code>
  47                       </taxonomy>
  48                     </clade>
  49                   </clade>
  50                   <clade>
  51                     <taxonomy>
  52                       <code>CIOIN</code>
  53                     </taxonomy>
  54                   </clade>
  55                 </clade>
  56                 <clade>
  57                   <taxonomy>
  58                     <code>BRAFL</code>
  59                   </taxonomy>
  60                 </clade>
  61               </clade>
  62               <clade>
  63                 <taxonomy>
  64                   <code>STRPU</code>
  65                 </taxonomy>
  66               </clade>
  67             </clade>
  68             <clade>
  69               <clade>
  70                 <clade>
  71                   <taxonomy>
  72                     <code>DROME</code>
  73                   </taxonomy>
  74                 </clade>
  75                 <clade>
  76                   <taxonomy>
  77                     <code>CAEEL</code>
  78                   </taxonomy>
  79                 </clade>
  80               </clade>
  81               <clade>
  82                 <taxonomy>
  83                   <code>LOTGI</code>
  84                 </taxonomy>
  85               </clade>
  86             </clade>
  87           </clade>
  88           <clade>
  89             <clade>
  90               <taxonomy>
  91                 <code>NEMVE</code>
  92               </taxonomy>
  93             </clade>
  94             <clade>
  95               <taxonomy>
  96                 <code>BEROV</code>
  97               </taxonomy>
  98             </clade>
  99           </clade>
 100         </clade>
 101         <clade>
 102           <taxonomy>
 103             <code>TRIAD</code>
 104           </taxonomy>
 105         </clade>
 106       </clade>
 107       <clade>
 108         <taxonomy>
 109           <code>MONBE</code>
 110         </taxonomy>
 111       </clade>
 112     </clade>
 113     <clade>
 114       <taxonomy>
 115         <code>YEAST</code>
 116       </taxonomy>
 117     </clade>
 118   </clade>
 119 </phylogeny>
 120 </phyloxml>