forester/aptx/aptx_example_files/BLAST_examples.xml

   1 <?xml version="1.0" encoding="UTF-8"?>
   2 <phyloxml xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.phyloxml.org http://www.phyloxml.org/1.10/phyloxml.xsd" xmlns="http://www.phyloxml.org">
   3 <phylogeny rooted="true">
   4   <clade>
   5     <events>
   6       <duplications>1</duplications>
   7     </events>
   8     <clade>
   9       <branch_length>0.100405</branch_length>
  10       <confidence type="unknown">100</confidence>
  11       <events>
  12         <duplications>1</duplications>
  13       </events>
  14       <clade>
  15         <branch_length>0.41517</branch_length>
  16         <confidence type="unknown">100</confidence>
  17         <events>
  18           <duplications>1</duplications>
  19         </events>
  20         <clade>
  21           <branch_length>0.30159</branch_length>
  22           <confidence type="unknown">97</confidence>
  23           <events>
  24             <duplications>1</duplications>
  25           </events>
  26           <clade>
  27             <branch_length>0.15021</branch_length>
  28             <confidence type="unknown">69</confidence>
  29             <events>
  30               <duplications>1</duplications>
  31             </events>
  32             <clade>
  33               <branch_length>0.04885</branch_length>
  34               <confidence type="unknown">68</confidence>
  35               <events>
  36                 <speciations>1</speciations>
  37               </events>
  38               <clade>
  39                 <branch_length>0.04633</branch_length>
  40                 <confidence type="unknown">59</confidence>
  41                 <events>
  42                   <speciations>1</speciations>
  43                 </events>
  44                 <clade>
  45                   <branch_length>0.18918</branch_length>
  46                   <confidence type="unknown">100</confidence>
  47                   <events>
  48                     <speciations>1</speciations>
  49                   </events>
  50                   <clade>
  51                     <branch_length>0.07518</branch_length>
  52                     <confidence type="unknown">97</confidence>
  53                     <events>
  54                       <speciations>1</speciations>
  55                     </events>
  56                     <clade>
  57                       <branch_length>0.0073</branch_length>
  58                       <confidence type="unknown">100</confidence>
  59                       <events>
  60                         <speciations>1</speciations>
  61                       </events>
  62                       <clade>
  63                         <branch_length>0.0036</branch_length>
  64                         <confidence type="unknown">91</confidence>
  65                         <events>
  66                           <speciations>1</speciations>
  67                         </events>
  68                         <clade>
  69                           <name>NP_001025424.1</name>
  70                           <branch_length>1.0E-5</branch_length>
  71                           <taxonomy>
  72                             <scientific_name>Danio rerio</scientific_name>
  73                           </taxonomy>
  74                         </clade>
  75                         <clade>
  76                           <branch_length>0.00327</branch_length>
  77                           <taxonomy>
  78                             <scientific_name>Felis catus</scientific_name>
  79                           </taxonomy>
  80                           <sequence>
  81                             <accession source="ncbi">ABJ16409.1</accession>
  82                             <name>BCL2</name>
  83                           </sequence>
  84                         </clade>
  85                       </clade>
  86                       <clade>
  87                         <name>hsCLCN7</name>
  88                         <branch_length>0.00962</branch_length>
  89                         <taxonomy>
  90                           <scientific_name>HUMAN</scientific_name>
  91                         </taxonomy>
  92                       </clade>
  93                     </clade>
  94                     <clade>
  95                       <name>ggClcn7</name>
  96                       <branch_length>0.28745</branch_length>
  97                       <taxonomy>
  98                         <scientific_name>CHICK</scientific_name>
  99                       </taxonomy>
 100                     </clade>
 101                   </clade>
 102                   <clade>
 103                     <name>frClcn_g150497</name>
 104                     <branch_length>0.12824</branch_length>
 105                     <taxonomy>
 106                       <scientific_name>FUGRU</scientific_name>
 107                     </taxonomy>
 108                   </clade>
 109                 </clade>
 110                 <clade>
 111                   <name>ciClc_146907</name>
 112                   <branch_length>0.38499</branch_length>
 113                   <taxonomy>
 114                     <scientific_name>CIOIN</scientific_name>
 115                   </taxonomy>
 116                 </clade>
 117               </clade>
 118               <clade>
 119                 <branch_length>0.37118</branch_length>
 120                 <confidence type="unknown">100</confidence>
 121                 <events>
 122                   <speciations>1</speciations>
 123                 </events>
 124                 <clade>
 125                   <name>dmClc_CG8594</name>
 126                   <branch_length>0.29315</branch_length>
 127                   <taxonomy>
 128                     <scientific_name>DROME</scientific_name>
 129                   </taxonomy>
 130                 </clade>
 131                 <clade>
 132                   <name>agClc_g16563</name>
 133                   <branch_length>0.18816</branch_length>
 134                   <taxonomy>
 135                     <scientific_name>ANOGA</scientific_name>
 136                   </taxonomy>
 137                 </clade>
 138               </clade>
 139             </clade>
 140             <clade>
 141               <branch_length>0.4337</branch_length>
 142               <confidence type="unknown">100</confidence>
 143               <events>
 144                 <speciations>1</speciations>
 145               </events>
 146               <clade>
 147                 <name>cbClcn_CBG23365</name>
 148                 <branch_length>0.02104</branch_length>
 149                 <taxonomy>
 150                   <scientific_name>CAEBR</scientific_name>
 151                 </taxonomy>
 152               </clade>
 153               <clade>
 154                 <name>ceClcn_CE29336</name>
 155                 <branch_length>0.00466</branch_length>
 156                 <taxonomy>
 157                   <scientific_name>CAEEL</scientific_name>
 158                 </taxonomy>
 159               </clade>
 160             </clade>
 161           </clade>
 162           <clade>
 163             <branch_length>0.27675</branch_length>
 164             <confidence type="unknown">100</confidence>
 165             <events>
 166               <speciations>1</speciations>
 167             </events>
 168             <clade>
 169               <branch_length>0.16193</branch_length>
 170               <confidence type="unknown">100</confidence>
 171               <events>
 172                 <speciations>1</speciations>
 173               </events>
 174               <clade>
 175                 <branch_length>0.06936</branch_length>
 176                 <confidence type="unknown">98</confidence>
 177                 <events>
 178                   <speciations>1</speciations>
 179                 </events>
 180                 <clade>
 181                   <branch_length>0.03192</branch_length>
 182                   <confidence type="unknown">100</confidence>
 183                   <events>
 184                     <speciations>1</speciations>
 185                   </events>
 186                   <clade>
 187                     <branch_length>0.02482</branch_length>
 188                     <confidence type="unknown">99</confidence>
 189                     <events>
 190                       <speciations>1</speciations>
 191                     </events>
 192                     <clade>
 193                       <name>rnClcn6</name>
 194                       <branch_length>0.01157</branch_length>
 195                       <taxonomy>
 196                         <scientific_name>RAT</scientific_name>
 197                       </taxonomy>
 198                     </clade>
 199                     <clade>
 200                       <name>mmClcn6</name>
 201                       <branch_length>0.00537</branch_length>
 202                       <taxonomy>
 203                         <scientific_name>MOUSE</scientific_name>
 204                       </taxonomy>
 205                     </clade>
 206                   </clade>
 207                   <clade>
 208                     <name>hsCLCN6</name>
 209                     <branch_length>0.00234</branch_length>
 210                     <taxonomy>
 211                       <scientific_name>HUMAN</scientific_name>
 212                     </taxonomy>
 213                   </clade>
 214                 </clade>
 215                 <clade>
 216                   <name>ggClcn6</name>
 217                   <branch_length>0.08378</branch_length>
 218                   <taxonomy>
 219                     <scientific_name>CHICK</scientific_name>
 220                   </taxonomy>
 221                 </clade>
 222               </clade>
 223               <clade>
 224                 <name>frClcn_g153343</name>
 225                 <branch_length>0.23936</branch_length>
 226                 <taxonomy>
 227                   <scientific_name>FUGRU</scientific_name>
 228                 </taxonomy>
 229               </clade>
 230             </clade>
 231             <clade>
 232               <name>ciClc_139586</name>
 233               <branch_length>0.35537</branch_length>
 234               <taxonomy>
 235                 <scientific_name>CIOIN</scientific_name>
 236               </taxonomy>
 237             </clade>
 238           </clade>
 239         </clade>
 240         <clade>
 241           <branch_length>0.37011</branch_length>
 242           <confidence type="unknown">100</confidence>
 243           <events>
 244             <speciations>1</speciations>
 245           </events>
 246           <clade>
 247             <name>ciClc_145284</name>
 248             <branch_length>0.32143</branch_length>
 249             <taxonomy>
 250               <scientific_name>CIOIN</scientific_name>
 251             </taxonomy>
 252           </clade>
 253           <clade>
 254             <name>ggClcn_nov1</name>
 255             <branch_length>0.47263</branch_length>
 256             <taxonomy>
 257               <scientific_name>CHICK</scientific_name>
 258             </taxonomy>
 259           </clade>
 260         </clade>
 261       </clade>
 262       <clade>
 263         <branch_length>0.42764</branch_length>
 264         <confidence type="unknown">100</confidence>
 265         <events>
 266           <duplications>1</duplications>
 267         </events>
 268         <clade>
 269           <branch_length>0.05585</branch_length>
 270           <confidence type="unknown">91</confidence>
 271           <events>
 272             <speciations>1</speciations>
 273           </events>
 274           <clade>
 275             <branch_length>0.06146</branch_length>
 276             <confidence type="unknown">92</confidence>
 277             <events>
 278               <speciations>1</speciations>
 279             </events>
 280             <clade>
 281               <branch_length>0.1309</branch_length>
 282               <confidence type="unknown">100</confidence>
 283               <events>
 284                 <duplications>1</duplications>
 285               </events>
 286               <clade>
 287                 <branch_length>0.05406</branch_length>
 288                 <confidence type="unknown">67</confidence>
 289                 <events>
 290                   <duplications>1</duplications>
 291                 </events>
 292                 <clade>
 293                   <branch_length>0.07178</branch_length>
 294                   <confidence type="unknown">97</confidence>
 295                   <events>
 296                     <speciations>1</speciations>
 297                   </events>
 298                   <clade>
 299                     <branch_length>0.0163</branch_length>
 300                     <confidence type="unknown">86</confidence>
 301                     <events>
 302                       <speciations>1</speciations>
 303                     </events>
 304                     <clade>
 305                       <branch_length>0.04239</branch_length>
 306                       <confidence type="unknown">100</confidence>
 307                       <events>
 308                         <speciations>1</speciations>
 309                       </events>
 310                       <clade>
 311                         <branch_length>0.0038</branch_length>
 312                         <confidence type="unknown">97</confidence>
 313                         <events>
 314                           <speciations>1</speciations>
 315                         </events>
 316                         <clade>
 317                           <name>rnClcn5</name>
 318                           <branch_length>1.0E-5</branch_length>
 319                           <taxonomy>
 320                             <scientific_name>RAT</scientific_name>
 321                           </taxonomy>
 322                         </clade>
 323                         <clade>
 324                           <name>mmClcn5</name>
 325                           <branch_length>1.0E-5</branch_length>
 326                           <taxonomy>
 327                             <scientific_name>MOUSE</scientific_name>
 328                           </taxonomy>
 329                         </clade>
 330                       </clade>
 331                       <clade>
 332                         <name>hsCLCN5</name>
 333                         <branch_length>0.00803</branch_length>
 334                         <taxonomy>
 335                           <scientific_name>HUMAN</scientific_name>
 336                         </taxonomy>
 337                       </clade>
 338                     </clade>
 339                     <clade>
 340                       <name>ggClcn5</name>
 341                       <branch_length>0.06559</branch_length>
 342                       <taxonomy>
 343                         <scientific_name>CHICK</scientific_name>
 344                       </taxonomy>
 345                     </clade>
 346                   </clade>
 347                   <clade>
 348                     <name>frClcn_g151908</name>
 349                     <branch_length>0.21641</branch_length>
 350                     <taxonomy>
 351                       <scientific_name>FUGRU</scientific_name>
 352                     </taxonomy>
 353                   </clade>
 354                 </clade>
 355                 <clade>
 356                   <branch_length>0.08833</branch_length>
 357                   <confidence type="unknown">100</confidence>
 358                   <events>
 359                     <speciations>1</speciations>
 360                   </events>
 361                   <clade>
 362                     <branch_length>0.01718</branch_length>
 363                     <confidence type="unknown">100</confidence>
 364                     <events>
 365                       <speciations>1</speciations>
 366                     </events>
 367                     <clade>
 368                       <branch_length>0.00177</branch_length>
 369                       <confidence type="unknown">65</confidence>
 370                       <events>
 371                         <speciations>1</speciations>
 372                       </events>
 373                       <clade>
 374                         <branch_length>0.00671</branch_length>
 375                         <confidence type="unknown">70</confidence>
 376                         <events>
 377                           <speciations>1</speciations>
 378                         </events>
 379                         <clade>
 380                           <name>rnClcn4</name>
 381                           <branch_length>1.0E-5</branch_length>
 382                           <taxonomy>
 383                             <scientific_name>RAT</scientific_name>
 384                           </taxonomy>
 385                         </clade>
 386                         <clade>
 387                           <name>mmClcn4</name>
 388                           <branch_length>0.01342</branch_length>
 389                           <taxonomy>
 390                             <scientific_name>MOUSE</scientific_name>
 391                           </taxonomy>
 392                         </clade>
 393                       </clade>
 394                       <clade>
 395                         <name>hsCLCN4</name>
 396                         <branch_length>1.0E-5</branch_length>
 397                         <taxonomy>
 398                           <scientific_name>HUMAN</scientific_name>
 399                         </taxonomy>
 400                       </clade>
 401                     </clade>
 402                     <clade>
 403                       <name>ggClcn4</name>
 404                       <branch_length>0.02178</branch_length>
 405                       <taxonomy>
 406                         <scientific_name>CHICK</scientific_name>
 407                       </taxonomy>
 408                     </clade>
 409                   </clade>
 410                   <clade>
 411                     <name>frClcn_g153787</name>
 412                     <branch_length>0.05099</branch_length>
 413                     <taxonomy>
 414                       <scientific_name>FUGRU</scientific_name>
 415                     </taxonomy>
 416                   </clade>
 417                 </clade>
 418               </clade>
 419               <clade>
 420                 <branch_length>0.0705</branch_length>
 421                 <confidence type="unknown">100</confidence>
 422                 <events>
 423                   <speciations>1</speciations>
 424                 </events>
 425                 <clade>
 426                   <branch_length>0.01719</branch_length>
 427                   <confidence type="unknown">100</confidence>
 428                   <events>
 429                     <speciations>1</speciations>
 430                   </events>
 431                   <clade>
 432                     <branch_length>0.00481</branch_length>
 433                     <confidence type="unknown">90</confidence>
 434                     <events>
 435                       <duplications>1</duplications>
 436                     </events>
 437                     <clade>
 438                       <branch_length>1.0E-5</branch_length>
 439                       <confidence type="unknown">45</confidence>
 440                       <events>
 441                         <speciations>1</speciations>
 442                       </events>
 443                       <clade>
 444                         <name>rnClcn3</name>
 445                         <branch_length>0.00336</branch_length>
 446                         <taxonomy>
 447                           <scientific_name>RAT</scientific_name>
 448                         </taxonomy>
 449                       </clade>
 450                       <clade>
 451                         <name>hsCLCN3</name>
 452                         <branch_length>1.0E-5</branch_length>
 453                         <taxonomy>
 454                           <scientific_name>HUMAN</scientific_name>
 455                         </taxonomy>
 456                       </clade>
 457                     </clade>
 458                     <clade>
 459                       <name>mmClcn3</name>
 460                       <branch_length>1.0E-5</branch_length>
 461                       <taxonomy>
 462                         <scientific_name>MOUSE</scientific_name>
 463                       </taxonomy>
 464                     </clade>
 465                   </clade>
 466                   <clade>
 467                     <name>ggClcn3</name>
 468                     <branch_length>0.00361</branch_length>
 469                     <taxonomy>
 470                       <scientific_name>CHICK</scientific_name>
 471                     </taxonomy>
 472                   </clade>
 473                 </clade>
 474                 <clade>
 475                   <name>frClcn_g127864</name>
 476                   <branch_length>0.04395</branch_length>
 477                   <taxonomy>
 478                     <scientific_name>FUGRU</scientific_name>
 479                   </taxonomy>
 480                 </clade>
 481               </clade>
 482             </clade>
 483             <clade>
 484               <name>ciClc_140203</name>
 485               <branch_length>0.28639</branch_length>
 486               <taxonomy>
 487                 <scientific_name>CIOIN</scientific_name>
 488               </taxonomy>
 489             </clade>
 490           </clade>
 491           <clade>
 492             <branch_length>0.1894</branch_length>
 493             <confidence type="unknown">97</confidence>
 494             <events>
 495               <speciations>1</speciations>
 496             </events>
 497             <clade>
 498               <name>agClc_g16174</name>
 499               <branch_length>0.05022</branch_length>
 500               <taxonomy>
 501                 <scientific_name>ANOGA</scientific_name>
 502               </taxonomy>
 503             </clade>
 504             <clade>
 505               <name>dmClc_CG5284</name>
 506               <branch_length>0.16939</branch_length>
 507               <taxonomy>
 508                 <scientific_name>DROME</scientific_name>
 509               </taxonomy>
 510             </clade>
 511           </clade>
 512         </clade>
 513         <clade>
 514           <branch_length>0.30137</branch_length>
 515           <confidence type="unknown">100</confidence>
 516           <events>
 517             <speciations>1</speciations>
 518           </events>
 519           <clade>
 520             <name>cbClcn_CBG03262</name>
 521             <branch_length>1.0E-5</branch_length>
 522             <taxonomy>
 523               <scientific_name>CAEBR</scientific_name>
 524             </taxonomy>
 525           </clade>
 526           <clade>
 527             <name>ceClcn_CE27360</name>
 528             <branch_length>0.02216</branch_length>
 529             <taxonomy>
 530               <scientific_name>CAEEL</scientific_name>
 531             </taxonomy>
 532           </clade>
 533         </clade>
 534       </clade>
 535     </clade>
 536     <clade>
 537       <branch_length>0.565495</branch_length>
 538       <confidence type="unknown">100</confidence>
 539       <events>
 540         <duplications>1</duplications>
 541       </events>
 542       <clade>
 543         <branch_length>0.15381</branch_length>
 544         <confidence type="unknown">64</confidence>
 545         <events>
 546           <duplications>1</duplications>
 547         </events>
 548         <clade>
 549           <branch_length>0.03139</branch_length>
 550           <confidence type="unknown">59</confidence>
 551           <events>
 552             <speciations>1</speciations>
 553           </events>
 554           <clade>
 555             <branch_length>0.09003</branch_length>
 556             <confidence type="unknown">77</confidence>
 557             <events>
 558               <speciations>1</speciations>
 559             </events>
 560             <clade>
 561               <branch_length>0.10834</branch_length>
 562               <confidence type="unknown">100</confidence>
 563               <events>
 564                 <duplications>1</duplications>
 565               </events>
 566               <clade>
 567                 <branch_length>0.14142</branch_length>
 568                 <confidence type="unknown">100</confidence>
 569                 <events>
 570                   <speciations>1</speciations>
 571                 </events>
 572                 <clade>
 573                   <branch_length>0.07698</branch_length>
 574                   <confidence type="unknown">99</confidence>
 575                   <events>
 576                     <speciations>1</speciations>
 577                   </events>
 578                   <clade>
 579                     <branch_length>0.0994</branch_length>
 580                     <confidence type="unknown">100</confidence>
 581                     <events>
 582                       <speciations>1</speciations>
 583                     </events>
 584                     <clade>
 585                       <branch_length>0.02139</branch_length>
 586                       <confidence type="unknown">100</confidence>
 587                       <events>
 588                         <speciations>1</speciations>
 589                       </events>
 590                       <clade>
 591                         <name>mmClcn1</name>
 592                         <branch_length>0.00151</branch_length>
 593                         <taxonomy>
 594                           <scientific_name>MOUSE</scientific_name>
 595                         </taxonomy>
 596                       </clade>
 597                       <clade>
 598                         <name>rnClcn1</name>
 599                         <branch_length>0.00347</branch_length>
 600                         <taxonomy>
 601                           <scientific_name>RAT</scientific_name>
 602                         </taxonomy>
 603                       </clade>
 604                     </clade>
 605                     <clade>
 606                       <name>hsCLCN1</name>
 607                       <branch_length>0.023</branch_length>
 608                       <taxonomy>
 609                         <scientific_name>HUMAN</scientific_name>
 610                       </taxonomy>
 611                     </clade>
 612                   </clade>
 613                   <clade>
 614                     <name>ggClcn1</name>
 615                     <branch_length>0.10289</branch_length>
 616                     <taxonomy>
 617                       <scientific_name>CHICK</scientific_name>
 618                     </taxonomy>
 619                   </clade>
 620                 </clade>
 621                 <clade>
 622                   <name>frClcn_g146581</name>
 623                   <branch_length>0.23436</branch_length>
 624                   <taxonomy>
 625                     <scientific_name>FUGRU</scientific_name>
 626                   </taxonomy>
 627                 </clade>
 628               </clade>
 629               <clade>
 630                 <branch_length>0.13663</branch_length>
 631                 <confidence type="unknown">99</confidence>
 632                 <events>
 633                   <duplications>1</duplications>
 634                 </events>
 635                 <clade>
 636                   <branch_length>0.02272</branch_length>
 637                   <confidence type="unknown">50</confidence>
 638                   <events>
 639                     <speciations>1</speciations>
 640                   </events>
 641                   <clade>
 642                     <branch_length>0.07138</branch_length>
 643                     <confidence type="unknown">65</confidence>
 644                     <events>
 645                       <speciations>1</speciations>
 646                     </events>
 647                     <clade>
 648                       <branch_length>0.07977</branch_length>
 649                       <confidence type="unknown">100</confidence>
 650                       <events>
 651                         <speciations>1</speciations>
 652                       </events>
 653                       <clade>
 654                         <branch_length>0.0061</branch_length>
 655                         <confidence type="unknown">64</confidence>
 656                         <events>
 657                           <speciations>1</speciations>
 658                         </events>
 659                         <clade>
 660                           <name>rnClcn2</name>
 661                           <branch_length>0.00453</branch_length>
 662                           <taxonomy>
 663                             <scientific_name>RAT</scientific_name>
 664                           </taxonomy>
 665                         </clade>
 666                         <clade>
 667                           <name>mmClcn2</name>
 668                           <branch_length>0.00755</branch_length>
 669                           <taxonomy>
 670                             <scientific_name>MOUSE</scientific_name>
 671                           </taxonomy>
 672                         </clade>
 673                       </clade>
 674                       <clade>
 675                         <name>hsCLCN2</name>
 676                         <branch_length>0.01584</branch_length>
 677                         <taxonomy>
 678                           <scientific_name>HUMAN</scientific_name>
 679                         </taxonomy>
 680                       </clade>
 681                     </clade>
 682                     <clade>
 683                       <name>ggClcn2</name>
 684                       <branch_length>0.05756</branch_length>
 685                       <taxonomy>
 686                         <scientific_name>CHICK</scientific_name>
 687                       </taxonomy>
 688                     </clade>
 689                   </clade>
 690                   <clade>
 691                     <name>frClcn_g129629</name>
 692                     <branch_length>0.02989</branch_length>
 693                     <taxonomy>
 694                       <scientific_name>FUGRU</scientific_name>
 695                     </taxonomy>
 696                   </clade>
 697                 </clade>
 698                 <clade>
 699                   <name>frClcn_g132311</name>
 700                   <branch_length>0.08432</branch_length>
 701                   <taxonomy>
 702                     <scientific_name>FUGRU</scientific_name>
 703                   </taxonomy>
 704                 </clade>
 705               </clade>
 706             </clade>
 707             <clade>
 708               <name>ciClc_142005</name>
 709               <branch_length>0.32253</branch_length>
 710               <taxonomy>
 711                 <scientific_name>CIOIN</scientific_name>
 712               </taxonomy>
 713             </clade>
 714           </clade>
 715           <clade>
 716             <branch_length>0.28604</branch_length>
 717             <confidence type="unknown">100</confidence>
 718             <events>
 719               <speciations>1</speciations>
 720             </events>
 721             <clade>
 722               <name>dmClc_CG31116</name>
 723               <branch_length>0.08284</branch_length>
 724               <taxonomy>
 725                 <scientific_name>DROME</scientific_name>
 726               </taxonomy>
 727             </clade>
 728             <clade>
 729               <name>agClc_g16123</name>
 730               <branch_length>0.08822</branch_length>
 731               <taxonomy>
 732                 <scientific_name>ANOGA</scientific_name>
 733               </taxonomy>
 734             </clade>
 735           </clade>
 736         </clade>
 737         <clade>
 738           <branch_length>0.19888</branch_length>
 739           <confidence type="unknown">64</confidence>
 740           <events>
 741             <duplications>1</duplications>
 742           </events>
 743           <clade>
 744             <branch_length>0.32241</branch_length>
 745             <confidence type="unknown">100</confidence>
 746             <events>
 747               <duplications>1</duplications>
 748             </events>
 749             <clade>
 750               <branch_length>0.19492</branch_length>
 751               <confidence type="unknown">100</confidence>
 752               <events>
 753                 <speciations>1</speciations>
 754               </events>
 755               <clade>
 756                 <name>ceClcn_CE20461</name>
 757                 <branch_length>0.01486</branch_length>
 758                 <taxonomy>
 759                   <scientific_name>CAEEL</scientific_name>
 760                 </taxonomy>
 761               </clade>
 762               <clade>
 763                 <name>cbClcn_CBG02916</name>
 764                 <branch_length>1.0E-5</branch_length>
 765                 <taxonomy>
 766                   <scientific_name>CAEBR</scientific_name>
 767                 </taxonomy>
 768               </clade>
 769             </clade>
 770             <clade>
 771               <branch_length>0.42103</branch_length>
 772               <confidence type="unknown">100</confidence>
 773               <events>
 774                 <speciations>1</speciations>
 775               </events>
 776               <clade>
 777                 <name>ceClcn_CE27450</name>
 778                 <branch_length>0.01893</branch_length>
 779                 <taxonomy>
 780                   <scientific_name>CAEEL</scientific_name>
 781                 </taxonomy>
 782               </clade>
 783               <clade>
 784                 <name>cbClcn_CBG03117</name>
 785                 <branch_length>0.00319</branch_length>
 786                 <taxonomy>
 787                   <scientific_name>CAEBR</scientific_name>
 788                 </taxonomy>
 789               </clade>
 790             </clade>
 791           </clade>
 792           <clade>
 793             <branch_length>0.12841</branch_length>
 794             <confidence type="unknown">44</confidence>
 795             <events>
 796               <duplications>1</duplications>
 797             </events>
 798             <clade>
 799               <branch_length>0.25828</branch_length>
 800               <confidence type="unknown">100</confidence>
 801               <events>
 802                 <speciations>1</speciations>
 803               </events>
 804               <clade>
 805                 <name>cbClcn_CBG13104</name>
 806                 <branch_length>0.08006</branch_length>
 807                 <taxonomy>
 808                   <scientific_name>CAEBR</scientific_name>
 809                 </taxonomy>
 810               </clade>
 811               <clade>
 812                 <name>ceClcn_CE27906</name>
 813                 <branch_length>0.0634</branch_length>
 814                 <taxonomy>
 815                   <scientific_name>CAEEL</scientific_name>
 816                 </taxonomy>
 817               </clade>
 818             </clade>
 819             <clade>
 820               <branch_length>0.5062</branch_length>
 821               <confidence type="unknown">100</confidence>
 822               <events>
 823                 <speciations>1</speciations>
 824               </events>
 825               <clade>
 826                 <name>ceClcn_CE28647</name>
 827                 <branch_length>0.0356</branch_length>
 828                 <taxonomy>
 829                   <scientific_name>CAEEL</scientific_name>
 830                 </taxonomy>
 831               </clade>
 832               <clade>
 833                 <name>cbClcn_CBG14338</name>
 834                 <branch_length>0.02779</branch_length>
 835                 <taxonomy>
 836                   <scientific_name>CAEBR</scientific_name>
 837                 </taxonomy>
 838               </clade>
 839             </clade>
 840           </clade>
 841         </clade>
 842       </clade>
 843       <clade>
 844         <branch_length>0.35485</branch_length>
 845         <confidence type="unknown">100</confidence>
 846         <events>
 847           <speciations>1</speciations>
 848         </events>
 849         <clade>
 850           <branch_length>0.1213</branch_length>
 851           <confidence type="unknown">97</confidence>
 852           <events>
 853             <speciations>1</speciations>
 854           </events>
 855           <clade>
 856             <branch_length>0.25749</branch_length>
 857             <confidence type="unknown">100</confidence>
 858             <events>
 859               <speciations>1</speciations>
 860             </events>
 861             <clade>
 862               <branch_length>0.07581</branch_length>
 863               <confidence type="unknown">100</confidence>
 864               <events>
 865                 <duplications>1</duplications>
 866               </events>
 867               <clade>
 868                 <branch_length>0.06387</branch_length>
 869                 <confidence type="unknown">100</confidence>
 870                 <events>
 871                   <speciations>1</speciations>
 872                 </events>
 873                 <clade>
 874                   <name>rnClckna</name>
 875                   <branch_length>0.03328</branch_length>
 876                   <taxonomy>
 877                     <scientific_name>RAT</scientific_name>
 878                   </taxonomy>
 879                 </clade>
 880                 <clade>
 881                   <name>mmClckna</name>
 882                   <branch_length>0.01039</branch_length>
 883                   <taxonomy>
 884                     <scientific_name>MOUSE</scientific_name>
 885                   </taxonomy>
 886                 </clade>
 887               </clade>
 888               <clade>
 889                 <branch_length>0.05298</branch_length>
 890                 <confidence type="unknown">100</confidence>
 891                 <events>
 892                   <speciations>1</speciations>
 893                 </events>
 894                 <clade>
 895                   <name>rnClcknb</name>
 896                   <branch_length>0.01948</branch_length>
 897                   <taxonomy>
 898                     <scientific_name>RAT</scientific_name>
 899                   </taxonomy>
 900                 </clade>
 901                 <clade>
 902                   <name>mmClcknb</name>
 903                   <branch_length>0.0249</branch_length>
 904                   <taxonomy>
 905                     <scientific_name>MOUSE</scientific_name>
 906                   </taxonomy>
 907                 </clade>
 908               </clade>
 909             </clade>
 910             <clade>
 911               <branch_length>0.02027</branch_length>
 912               <confidence type="unknown">95</confidence>
 913               <events>
 914                 <duplications>1</duplications>
 915               </events>
 916               <clade>
 917                 <name>hsCLCKNB</name>
 918                 <branch_length>0.04974</branch_length>
 919                 <taxonomy>
 920                   <scientific_name>HUMAN</scientific_name>
 921                 </taxonomy>
 922               </clade>
 923               <clade>
 924                 <name>hsCLCKNA</name>
 925                 <branch_length>0.06307</branch_length>
 926                 <taxonomy>
 927                   <scientific_name>HUMAN</scientific_name>
 928                 </taxonomy>
 929               </clade>
 930             </clade>
 931           </clade>
 932           <clade>
 933             <name>ggClcnk</name>
 934             <branch_length>0.32528</branch_length>
 935             <taxonomy>
 936               <scientific_name>CHICK</scientific_name>
 937             </taxonomy>
 938           </clade>
 939         </clade>
 940         <clade>
 941           <name>frClcn_nov1</name>
 942           <branch_length>0.48668</branch_length>
 943           <taxonomy>
 944             <scientific_name>FUGRU</scientific_name>
 945           </taxonomy>
 946         </clade>
 947       </clade>
 948     </clade>
 949   </clade>
 950 </phylogeny>
 951 </phyloxml>