forester/aptx/aptx_example_files/demo_colors_and_widths.xml

   1 <?xml version="1.0" encoding="UTF-8"?>
   2 <phyloxml xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.phyloxml.org http://www.phyloxml.org/1.10/phyloxml.xsd" xmlns="http://www.phyloxml.org">
   3 <phylogeny rooted="true">
   4   <clade>
   5     <name>root</name>
   6     <branch_length>12.0</branch_length>
   7     <width>7.0</width>
   8     <color>
   9       <red>0</red>
  10       <green>255</green>
  11       <blue>255</blue>
  12     </color>
  13     <clade>
  14       <name>big</name>
  15       <branch_length>4.0</branch_length>
  16       <width>4.0</width>
  17       <color>
  18         <red>34</red>
  19         <green>67</green>
  20         <blue>97</blue>
  21       </color>
  22       <clade>
  23         <name>red</name>
  24         <branch_length>12.0</branch_length>
  25         <width>2.0</width>
  26         <color>
  27           <red>255</red>
  28           <green>0</green>
  29           <blue>0</blue>
  30         </color>
  31         <clade>
  32           <name>red1</name>
  33           <branch_length>12.0</branch_length>
  34           <width>2.0</width>
  35           <color>
  36             <red>200</red>
  37             <green>0</green>
  38             <blue>0</blue>
  39           </color>
  40           <clade>
  41             <name>red</name>
  42             <branch_length>12.0</branch_length>
  43             <width>2.0</width>
  44             <color>
  45               <red>255</red>
  46               <green>0</green>
  47               <blue>0</blue>
  48             </color>
  49             <clade>
  50               <name>red1</name>
  51               <branch_length>12.0</branch_length>
  52               <width>0.0</width>
  53               <color>
  54                 <red>200</red>
  55                 <green>0</green>
  56                 <blue>0</blue>
  57               </color>
  58             </clade>
  59             <clade>
  60               <name>red2</name>
  61               <branch_length>12.0</branch_length>
  62               <width>1.0</width>
  63               <color>
  64                 <red>155</red>
  65                 <green>0</green>
  66                 <blue>0</blue>
  67               </color>
  68             </clade>
  69             <clade>
  70               <name>red3</name>
  71               <branch_length>12.0</branch_length>
  72               <width>2.0</width>
  73               <color>
  74                 <red>55</red>
  75                 <green>0</green>
  76                 <blue>0</blue>
  77               </color>
  78             </clade>
  79             <clade>
  80               <name>red4</name>
  81               <branch_length>12.0</branch_length>
  82               <width>4.0</width>
  83               <color>
  84                 <red>30</red>
  85                 <green>0</green>
  86                 <blue>0</blue>
  87               </color>
  88             </clade>
  89           </clade>
  90           <clade>
  91             <name>grey</name>
  92             <branch_length>12.0</branch_length>
  93             <width>3.0</width>
  94             <color>
  95               <red>100</red>
  96               <green>100</green>
  97               <blue>100</blue>
  98             </color>
  99             <clade>
 100               <name>grey1</name>
 101               <branch_length>12.0</branch_length>
 102               <color>
 103                 <red>100</red>
 104                 <green>50</green>
 105                 <blue>0</blue>
 106               </color>
 107             </clade>
 108             <clade>
 109               <name>grey2</name>
 110               <branch_length>12.0</branch_length>
 111               <color>
 112                 <red>100</red>
 113                 <green>0</green>
 114                 <blue>40</blue>
 115               </color>
 116             </clade>
 117           </clade>
 118           <clade>
 119             <name>black</name>
 120             <branch_length>12.0</branch_length>
 121             <width>4.0</width>
 122             <color>
 123               <red>0</red>
 124               <green>0</green>
 125               <blue>0</blue>
 126             </color>
 127             <clade>
 128               <name>bred</name>
 129               <branch_length>12.0</branch_length>
 130               <width>2.0</width>
 131               <color>
 132                 <red>255</red>
 133                 <green>0</green>
 134                 <blue>0</blue>
 135               </color>
 136             </clade>
 137             <clade>
 138               <name>bgreen</name>
 139               <branch_length>12.0</branch_length>
 140               <width>8.0</width>
 141               <color>
 142                 <red>0</red>
 143                 <green>255</green>
 144                 <blue>0</blue>
 145               </color>
 146             </clade>
 147           </clade>
 148           <clade>
 149             <name>green</name>
 150             <branch_length>12.0</branch_length>
 151             <width>5.0</width>
 152             <color>
 153               <red>0</red>
 154               <green>255</green>
 155               <blue>0</blue>
 156             </color>
 157             <clade>
 158               <name>green1</name>
 159               <branch_length>12.0</branch_length>
 160               <color>
 161                 <red>0</red>
 162                 <green>50</green>
 163                 <blue>0</blue>
 164               </color>
 165             </clade>
 166             <clade>
 167               <name>green2</name>
 168               <branch_length>12.0</branch_length>
 169               <color>
 170                 <red>0</red>
 171                 <green>150</green>
 172                 <blue>0</blue>
 173               </color>
 174             </clade>
 175           </clade>
 176           <clade>
 177             <name>purp</name>
 178             <branch_length>12.0</branch_length>
 179             <width>6.0</width>
 180             <color>
 181               <red>255</red>
 182               <green>0</green>
 183               <blue>255</blue>
 184             </color>
 185             <clade>
 186               <name>purp1</name>
 187               <branch_length>12.0</branch_length>
 188               <width>2.0</width>
 189               <color>
 190                 <red>200</red>
 191                 <green>0</green>
 192                 <blue>200</blue>
 193               </color>
 194               <clade>
 195                 <name>purp11</name>
 196                 <branch_length>12.0</branch_length>
 197                 <width>7.0</width>
 198                 <color>
 199                   <red>200</red>
 200                   <green>100</green>
 201                   <blue>200</blue>
 202                 </color>
 203               </clade>
 204               <clade>
 205                 <name>purp12</name>
 206                 <branch_length>12.0</branch_length>
 207                 <width>5.0</width>
 208                 <color>
 209                   <red>155</red>
 210                   <green>100</green>
 211                   <blue>155</blue>
 212                 </color>
 213               </clade>
 214             </clade>
 215             <clade>
 216               <name>purp2</name>
 217               <branch_length>12.0</branch_length>
 218               <width>3.0</width>
 219               <color>
 220                 <red>155</red>
 221                 <green>0</green>
 222                 <blue>155</blue>
 223               </color>
 224               <clade>
 225                 <name>red</name>
 226                 <branch_length>3.0</branch_length>
 227                 <width>3.0</width>
 228                 <color>
 229                   <red>255</red>
 230                   <green>0</green>
 231                   <blue>0</blue>
 232                 </color>
 233               </clade>
 234               <clade>
 235                 <name>green</name>
 236                 <branch_length>4.0</branch_length>
 237                 <width>2.0</width>
 238                 <color>
 239                   <red>0</red>
 240                   <green>255</green>
 241                   <blue>0</blue>
 242                 </color>
 243                 <clade>
 244                   <name>purp1</name>
 245                   <branch_length>12.0</branch_length>
 246                   <width>2.0</width>
 247                   <color>
 248                     <red>200</red>
 249                     <green>0</green>
 250                     <blue>200</blue>
 251                   </color>
 252                   <clade>
 253                     <name>purp11</name>
 254                     <branch_length>12.0</branch_length>
 255                     <width>7.0</width>
 256                     <color>
 257                       <red>200</red>
 258                       <green>100</green>
 259                       <blue>200</blue>
 260                     </color>
 261                   </clade>
 262                   <clade>
 263                     <name>purp12</name>
 264                     <branch_length>12.0</branch_length>
 265                     <width>4.0</width>
 266                     <color>
 267                       <red>155</red>
 268                       <green>100</green>
 269                       <blue>155</blue>
 270                     </color>
 271                   </clade>
 272                 </clade>
 273                 <clade>
 274                   <name>purp2</name>
 275                   <branch_length>12.0</branch_length>
 276                   <width>3.0</width>
 277                   <color>
 278                     <red>155</red>
 279                     <green>0</green>
 280                     <blue>155</blue>
 281                   </color>
 282                   <clade>
 283                     <name>red</name>
 284                     <branch_length>3.0</branch_length>
 285                     <width>3.0</width>
 286                     <color>
 287                       <red>255</red>
 288                       <green>0</green>
 289                       <blue>0</blue>
 290                     </color>
 291                   </clade>
 292                   <clade>
 293                     <name>green</name>
 294                     <branch_length>4.0</branch_length>
 295                     <width>2.0</width>
 296                     <color>
 297                       <red>0</red>
 298                       <green>255</green>
 299                       <blue>0</blue>
 300                     </color>
 301                   </clade>
 302                 </clade>
 303               </clade>
 304             </clade>
 305           </clade>
 306           <clade>
 307             <name>yello</name>
 308             <branch_length>12.0</branch_length>
 309             <width>7.0</width>
 310             <color>
 311               <red>255</red>
 312               <green>255</green>
 313               <blue>0</blue>
 314             </color>
 315             <clade>
 316               <name>yello1</name>
 317               <branch_length>12.0</branch_length>
 318               <width>2.0</width>
 319               <color>
 320                 <red>200</red>
 321                 <green>150</green>
 322                 <blue>0</blue>
 323               </color>
 324             </clade>
 325             <clade>
 326               <name>yello2</name>
 327               <branch_length>12.0</branch_length>
 328               <width>3.0</width>
 329               <color>
 330                 <red>155</red>
 331                 <green>100</green>
 332                 <blue>0</blue>
 333               </color>
 334             </clade>
 335             <clade>
 336               <name>yello3</name>
 337               <branch_length>12.0</branch_length>
 338               <width>4.0</width>
 339               <color>
 340                 <red>155</red>
 341                 <green>100</green>
 342                 <blue>50</blue>
 343               </color>
 344             </clade>
 345           </clade>
 346         </clade>
 347         <clade>
 348           <name>red2</name>
 349           <branch_length>12.0</branch_length>
 350           <width>1.0</width>
 351           <color>
 352             <red>155</red>
 353             <green>0</green>
 354             <blue>0</blue>
 355           </color>
 356         </clade>
 357         <clade>
 358           <name>red3</name>
 359           <branch_length>12.0</branch_length>
 360           <width>2.0</width>
 361           <color>
 362             <red>55</red>
 363             <green>0</green>
 364             <blue>0</blue>
 365           </color>
 366         </clade>
 367         <clade>
 368           <name>red4</name>
 369           <branch_length>12.0</branch_length>
 370           <width>4.0</width>
 371           <color>
 372             <red>30</red>
 373             <green>0</green>
 374             <blue>0</blue>
 375           </color>
 376         </clade>
 377       </clade>
 378       <clade>
 379         <name>grey</name>
 380         <branch_length>12.0</branch_length>
 381         <width>3.0</width>
 382         <color>
 383           <red>100</red>
 384           <green>100</green>
 385           <blue>100</blue>
 386         </color>
 387         <clade>
 388           <name>grey1</name>
 389           <branch_length>12.0</branch_length>
 390           <color>
 391             <red>100</red>
 392             <green>50</green>
 393             <blue>0</blue>
 394           </color>
 395         </clade>
 396         <clade>
 397           <name>grey2</name>
 398           <branch_length>12.0</branch_length>
 399           <color>
 400             <red>100</red>
 401             <green>0</green>
 402             <blue>40</blue>
 403           </color>
 404         </clade>
 405       </clade>
 406       <clade>
 407         <name>black</name>
 408         <branch_length>12.0</branch_length>
 409         <width>4.0</width>
 410         <color>
 411           <red>0</red>
 412           <green>0</green>
 413           <blue>0</blue>
 414         </color>
 415         <clade>
 416           <name>bred</name>
 417           <branch_length>12.0</branch_length>
 418           <width>2.0</width>
 419           <color>
 420             <red>255</red>
 421             <green>0</green>
 422             <blue>0</blue>
 423           </color>
 424         </clade>
 425         <clade>
 426           <name>bgreen</name>
 427           <branch_length>12.0</branch_length>
 428           <width>8.0</width>
 429           <color>
 430             <red>0</red>
 431             <green>255</green>
 432             <blue>0</blue>
 433           </color>
 434         </clade>
 435       </clade>
 436       <clade>
 437         <name>green</name>
 438         <branch_length>12.0</branch_length>
 439         <width>5.0</width>
 440         <color>
 441           <red>0</red>
 442           <green>255</green>
 443           <blue>0</blue>
 444         </color>
 445         <clade>
 446           <name>green1</name>
 447           <branch_length>12.0</branch_length>
 448           <color>
 449             <red>0</red>
 450             <green>50</green>
 451             <blue>0</blue>
 452           </color>
 453         </clade>
 454         <clade>
 455           <name>green2</name>
 456           <branch_length>12.0</branch_length>
 457           <color>
 458             <red>0</red>
 459             <green>150</green>
 460             <blue>0</blue>
 461           </color>
 462         </clade>
 463       </clade>
 464       <clade>
 465         <name>purp</name>
 466         <branch_length>12.0</branch_length>
 467         <width>6.0</width>
 468         <color>
 469           <red>255</red>
 470           <green>0</green>
 471           <blue>255</blue>
 472         </color>
 473         <clade>
 474           <name>purp1</name>
 475           <branch_length>12.0</branch_length>
 476           <width>2.0</width>
 477           <color>
 478             <red>200</red>
 479             <green>0</green>
 480             <blue>200</blue>
 481           </color>
 482           <clade>
 483             <name>purp11</name>
 484             <branch_length>12.0</branch_length>
 485             <width>7.0</width>
 486             <color>
 487               <red>200</red>
 488               <green>100</green>
 489               <blue>200</blue>
 490             </color>
 491           </clade>
 492           <clade>
 493             <name>purp12</name>
 494             <branch_length>12.0</branch_length>
 495             <width>5.0</width>
 496             <color>
 497               <red>155</red>
 498               <green>100</green>
 499               <blue>155</blue>
 500             </color>
 501           </clade>
 502         </clade>
 503         <clade>
 504           <name>purp2</name>
 505           <branch_length>12.0</branch_length>
 506           <width>3.0</width>
 507           <color>
 508             <red>155</red>
 509             <green>0</green>
 510             <blue>155</blue>
 511           </color>
 512           <clade>
 513             <name>red</name>
 514             <branch_length>3.0</branch_length>
 515             <width>3.0</width>
 516             <color>
 517               <red>255</red>
 518               <green>0</green>
 519               <blue>0</blue>
 520             </color>
 521           </clade>
 522           <clade>
 523             <name>green</name>
 524             <branch_length>4.0</branch_length>
 525             <width>2.0</width>
 526             <color>
 527               <red>0</red>
 528               <green>255</green>
 529               <blue>0</blue>
 530             </color>
 531             <clade>
 532               <name>purp1</name>
 533               <branch_length>12.0</branch_length>
 534               <width>2.0</width>
 535               <color>
 536                 <red>200</red>
 537                 <green>0</green>
 538                 <blue>200</blue>
 539               </color>
 540               <clade>
 541                 <name>purp11</name>
 542                 <branch_length>12.0</branch_length>
 543                 <width>7.0</width>
 544                 <color>
 545                   <red>200</red>
 546                   <green>100</green>
 547                   <blue>200</blue>
 548                 </color>
 549               </clade>
 550               <clade>
 551                 <name>purp12</name>
 552                 <branch_length>12.0</branch_length>
 553                 <width>8.0</width>
 554                 <color>
 555                   <red>155</red>
 556                   <green>100</green>
 557                   <blue>155</blue>
 558                 </color>
 559               </clade>
 560             </clade>
 561             <clade>
 562               <name>purp2</name>
 563               <branch_length>12.0</branch_length>
 564               <width>3.0</width>
 565               <color>
 566                 <red>155</red>
 567                 <green>0</green>
 568                 <blue>155</blue>
 569               </color>
 570               <clade>
 571                 <name>red</name>
 572                 <branch_length>3.0</branch_length>
 573                 <width>3.0</width>
 574                 <color>
 575                   <red>255</red>
 576                   <green>0</green>
 577                   <blue>0</blue>
 578                 </color>
 579               </clade>
 580               <clade>
 581                 <name>green</name>
 582                 <branch_length>4.0</branch_length>
 583                 <width>2.0</width>
 584                 <color>
 585                   <red>0</red>
 586                   <green>255</green>
 587                   <blue>0</blue>
 588                 </color>
 589               </clade>
 590             </clade>
 591           </clade>
 592         </clade>
 593       </clade>
 594       <clade>
 595         <name>yello</name>
 596         <branch_length>12.0</branch_length>
 597         <width>7.0</width>
 598         <color>
 599           <red>255</red>
 600           <green>255</green>
 601           <blue>0</blue>
 602         </color>
 603         <clade>
 604           <name>yello1</name>
 605           <branch_length>12.0</branch_length>
 606           <width>2.0</width>
 607           <color>
 608             <red>200</red>
 609             <green>150</green>
 610             <blue>0</blue>
 611           </color>
 612         </clade>
 613         <clade>
 614           <name>yello2</name>
 615           <branch_length>12.0</branch_length>
 616           <width>3.0</width>
 617           <color>
 618             <red>155</red>
 619             <green>100</green>
 620             <blue>0</blue>
 621           </color>
 622         </clade>
 623         <clade>
 624           <name>yello3</name>
 625           <branch_length>12.0</branch_length>
 626           <width>4.0</width>
 627           <color>
 628             <red>155</red>
 629             <green>100</green>
 630             <blue>50</blue>
 631           </color>
 632         </clade>
 633       </clade>
 634     </clade>
 635     <clade>
 636       <name>black</name>
 637       <branch_length>5.0</branch_length>
 638       <width>2.0</width>
 639       <color>
 640         <red>0</red>
 641         <green>0</green>
 642         <blue>0</blue>
 643       </color>
 644     </clade>
 645   </clade>
 646 </phylogeny>
 647 </phyloxml>