forester/aptx/aptx_example_files/multiple_support.xml

   1 <?xml version="1.0" encoding="UTF-8"?>
   2 <phyloxml xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
   3    xsi:schemaLocation="http://www.phyloxml.org http://www.phyloxml.org/1.10/phyloxml.xsd"
   4    xmlns="http://www.phyloxml.org">
   5    <phylogeny rooted="true">
   6       <name>multiple support</name>
   7       <clade>
   8          <taxonomy>
   9             <id provider="tol">16299</id>
  10             <common_name>Hominidae</common_name>
  11          </taxonomy>
  12          <clade>
  13             <confidence type="posterior">0.9</confidence>
  14             <confidence type="bootstrap">90</confidence>
  15             <confidence type="bootstrap">80</confidence>
  16             <taxonomy>
  17                <id provider="tol">16410</id>
  18                <scientific_name>Pongo</scientific_name>
  19             </taxonomy>
  20             <clade>
  21                <taxonomy>
  22                   <id provider="tol">65353</id>
  23                   <scientific_name>Pongo abelii</scientific_name>
  24                </taxonomy>
  25             </clade>
  26             <clade>
  27                <taxonomy>
  28                   <id provider="tol">65354</id>
  29                   <scientific_name>Pongo pygmaeus</scientific_name>
  30                </taxonomy>
  31             </clade>
  32          </clade>
  33          <clade>
  34             <taxonomy>
  35                <id provider="tol">16411</id>
  36             </taxonomy>
  37             <clade>
  38                <taxonomy>
  39                   <id provider="tol">16412</id>
  40                </taxonomy>
  41                <clade>
  42                   <confidence type="bootstrap">80</confidence>
  43                   <confidence type="posterior">0.9</confidence>
  44                   <confidence type="bootstrap">90</confidence>
  45                   <taxonomy>
  46                      <id provider="tol">16413</id>
  47                      <scientific_name>Pan</scientific_name>
  48                   </taxonomy>
  49                   <clade>
  50                      <taxonomy>
  51                         <id provider="tol">26564</id>
  52                         <scientific_name>Pan paniscus</scientific_name>
  53                      </taxonomy>
  54                   </clade>
  55                   <clade>
  56                      <taxonomy>
  57                         <id provider="tol">26565</id>
  58                         <scientific_name>Pan troglodytes</scientific_name>
  59                      </taxonomy>
  60                   </clade>
  61                </clade>
  62                <clade>
  63                   <confidence type="posterior">0.9</confidence>
  64                   <confidence type="likelihood">0.8</confidence>
  65                   <confidence type="bootstrap">30</confidence>
  66                   <confidence type="bootstrap">20</confidence>
  67                   <confidence type="bootstrap">10</confidence>
  68                   <taxonomy>
  69                      <id provider="tol">16414</id>
  70                   </taxonomy>
  71                   <clade>
  72                      <taxonomy>
  73                         <id provider="tol">16415</id>
  74                         <scientific_name>Ardipithecus</scientific_name>
  75                      </taxonomy>
  76                   </clade>
  77                   <clade>
  78                      <taxonomy>
  79                         <id provider="tol">16416</id>
  80                      </taxonomy>
  81                      <clade>
  82                         <taxonomy>
  83                            <id provider="tol">16417</id>
  84                            <scientific_name>Australopithecus</scientific_name>
  85                         </taxonomy>
  86                      </clade>
  87                      <clade>
  88                         <taxonomy>
  89                            <id provider="tol">16418</id>
  90                            <scientific_name>Homo</scientific_name>
  91                         </taxonomy>
  92                         <clade>
  93                            <taxonomy>
  94                               <id provider="tol">16421</id>
  95                               <scientific_name>Homo sapiens</scientific_name>
  96                            </taxonomy>
  97                         </clade>
  98                         <clade>
  99                            <taxonomy>
 100                               <id provider="tol">16422</id>
 101                               <scientific_name>Homo erectus</scientific_name>
 102                            </taxonomy>
 103                         </clade>
 104                         <clade>
 105                            <taxonomy>
 106                               <id provider="tol">16423</id>
 107                               <scientific_name>Homo ergaster</scientific_name>
 108                            </taxonomy>
 109                         </clade>
 110                         <clade>
 111                            <taxonomy>
 112                               <id provider="tol">16424</id>
 113                               <scientific_name>Homo rudolfensis</scientific_name>
 114                            </taxonomy>
 115                         </clade>
 116                         <clade>
 117                            <taxonomy>
 118                               <id provider="tol">16425</id>
 119                               <scientific_name>Homo habilis</scientific_name>
 120                            </taxonomy>
 121                         </clade>
 122                      </clade>
 123                   </clade>
 124                </clade>
 125             </clade>
 126             <clade>
 127                <confidence type="bootstrap">10</confidence>
 128                <confidence type="posterior">0.9</confidence>
 129                <confidence type="bootstrap">20</confidence>
 130                <confidence type="likelihood">0.8</confidence>
 131                <confidence type="bootstrap">30</confidence>
 132                <taxonomy>
 133                   <id provider="tol">16419</id>
 134                   <scientific_name>Gorilla</scientific_name>
 135                </taxonomy>
 136                <clade>
 137                   <taxonomy>
 138                      <id provider="tol">65355</id>
 139                      <scientific_name>Gorilla beringei</scientific_name>
 140                   </taxonomy>
 141                </clade>
 142                <clade>
 143                   <taxonomy>
 144                      <id provider="tol">65356</id>
 145                      <scientific_name>Gorilla gorilla</scientific_name>
 146                   </taxonomy>
 147                </clade>
 148             </clade>
 149          </clade>
 150       </clade>
 151    </phylogeny>
 152 </phyloxml>