forester/aptx/aptx_example_files/tol_138.xml

   1 <?xml version="1.0" encoding="UTF-8"?>
   2 <phyloxml xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.phyloxml.org http://www.phyloxml.org/1.10/phyloxml.xsd" xmlns="http://www.phyloxml.org">
   3 <phylogeny rooted="true" rerootable="false">
   4   <clade>
   5     <name>cellular_organisms</name>
   6     <clade>
   7       <name>Neomura</name>
   8       <clade>
   9         <taxonomy>
  10           <id provider="uniprot">2759</id>
  11           <scientific_name>Eukaryota</scientific_name>
  12           <rank>superkingdom</rank>
  13         </taxonomy>
  14         <clade>
  15           <name>Unikonta</name>
  16           <clade>
  17             <name>Opisthokonta &amp; Apusozoa</name>
  18             <clade>
  19               <taxonomy>
  20                 <id provider="uniprot">33154</id>
  21                 <scientific_name>Opisthokonta</scientific_name>
  22                 <common_name>Fungi/Metazoa group</common_name>
  23               </taxonomy>
  24               <clade>
  25                 <taxonomy>
  26                   <scientific_name>Holozoa</scientific_name>
  27                 </taxonomy>
  28                 <clade>
  29                   <name>Choanoflagellatea &amp; Metazoa</name>
  30                   <clade>
  31                     <name>Metazoa</name>
  32                     <taxonomy>
  33                       <id provider="uniprot">33208</id>
  34                       <scientific_name>Metazoa</scientific_name>
  35                       <rank>kingdom</rank>
  36                     </taxonomy>
  37                     <clade>
  38                       <name>Eumetazoa</name>
  39                       <reference doi="10.1038/nature06614">
  40                       </reference>
  41                       <clade>
  42                         <name>Bilateria_Cnidaria</name>
  43                         <clade>
  44                           <name>Bilateria</name>
  45                           <clade>
  46                             <name>Deuterostomia</name>
  47                             <reference doi="10.1038/nature04336">
  48                             </reference>
  49                             <clade>
  50                               <name>Chordata</name>
  51                               <taxonomy>
  52                                 <id provider="uniprot">7711</id>
  53                                 <scientific_name>Chordata</scientific_name>
  54                                 <rank>phylum</rank>
  55                               </taxonomy>
  56                               <clade>
  57                                 <name>Urochordata &amp; Vertebrata</name>
  58                                 <clade>
  59                                   <taxonomy>
  60                                     <id provider="uniprot">7742</id>
  61                                     <scientific_name>Vertebrata</scientific_name>
  62                                   </taxonomy>
  63                                   <clade>
  64                                     <taxonomy>
  65                                       <id provider="uniprot">7776</id>
  66                                       <scientific_name>Gnathostomata</scientific_name>
  67                                       <common_name>jawed vertebrates</common_name>
  68                                       <rank>superclass</rank>
  69                                     </taxonomy>
  70                                     <clade>
  71                                       <taxonomy>
  72                                         <id provider="uniprot">117571</id>
  73                                         <scientific_name>Euteleostomi</scientific_name>
  74                                       </taxonomy>
  75                                       <clade>
  76                                         <name>Tetrapoda</name>
  77                                         <clade>
  78                                           <name>Amniota</name>
  79                                           <clade>
  80                                             <taxonomy>
  81                                               <id provider="uniprot">40674</id>
  82                                               <scientific_name>Mammalia</scientific_name>
  83                                               <rank>class</rank>
  84                                             </taxonomy>
  85                                             <clade>
  86                                               <name>Theria</name>
  87                                               <clade>
  88                                                 <taxonomy>
  89                                                   <id provider="uniprot">9347</id>
  90                                                   <scientific_name>Eutheria</scientific_name>
  91                                                   <common_name>Placental mammals</common_name>
  92                                                 </taxonomy>
  93                                                 <reference doi="10.1002/bies.200900053">
  94                                                   <desc>The new framework for understanding placental mammal evolution</desc>
  95                                                 </reference>
  96                                                 <reference>
  97                                                 </reference>
  98                                                 <reference>
  99                                                 </reference>
 100                                                 <clade>
 101                                                   <taxonomy>
 102                                                     <scientific_name>Boreoeutheria</scientific_name>
 103                                                     <synonym>Boreotheria</synonym>
 104                                                   </taxonomy>
 105                                                   <clade>
 106                                                     <taxonomy>
 107                                                       <id provider="uniprot">314146</id>
 108                                                       <scientific_name>Euarchontoglires</scientific_name>
 109                                                       <rank>superorder</rank>
 110                                                     </taxonomy>
 111                                                     <clade>
 112                                                       <taxonomy>
 113                                                         <scientific_name>Euarchonta</scientific_name>
 114                                                       </taxonomy>
 115                                                       <clade>
 116                                                         <taxonomy>
 117                                                           <id provider="uniprot">9443</id>
 118                                                           <scientific_name>Primates</scientific_name>
 119                                                           <rank>order</rank>
 120                                                         </taxonomy>
 121                                                         <clade>
 122                                                           <taxonomy>
 123                                                             <id provider="uniprot">376913</id>
 124                                                             <scientific_name>Haplorrhini</scientific_name>
 125                                                             <rank>suborder</rank>
 126                                                           </taxonomy>
 127                                                           <clade>
 128                                                             <taxonomy>
 129                                                               <id provider="uniprot">314293</id>
 130                                                               <scientific_name>Simiiformes</scientific_name>
 131                                                               <rank>infraorder</rank>
 132                                                             </taxonomy>
 133                                                             <clade>
 134                                                               <taxonomy>
 135                                                                 <id provider="uniprot">9526</id>
 136                                                                 <scientific_name>Catarrhini</scientific_name>
 137                                                               </taxonomy>
 138                                                               <clade>
 139                                                                 <taxonomy>
 140                                                                   <id provider="uniprot">314295</id>
 141                                                                   <scientific_name>Hominoidea</scientific_name>
 142                                                                   <common_name>Apes</common_name>
 143                                                                   <rank>superfamily</rank>
 144                                                                 </taxonomy>
 145                                                                 <clade>
 146                                                                   <taxonomy>
 147                                                                     <id provider="uniprot">9604</id>
 148                                                                     <scientific_name>Hominidae</scientific_name>
 149                                                                     <common_name>Great apes</common_name>
 150                                                                     <rank>family</rank>
 151                                                                   </taxonomy>
 152                                                                   <clade>
 153                                                                     <taxonomy>
 154                                                                       <id provider="uniprot">207598</id>
 155                                                                       <scientific_name>Homininae</scientific_name>
 156                                                                       <rank>subfamily</rank>
 157                                                                     </taxonomy>
 158                                                                     <clade>
 159                                                                       <taxonomy>
 160                                                                         <scientific_name>Hominini</scientific_name>
 161                                                                         <rank>tribe</rank>
 162                                                                       </taxonomy>
 163                                                                       <clade>
 164                                                                         <taxonomy>
 165                                                                           <id provider="uniprot">9606</id>
 166                                                                           <code>HUMAN</code>
 167                                                                           <scientific_name>Homo sapiens</scientific_name>
 168                                                                           <common_name>Human</common_name>
 169                                                                           <rank>species</rank>
 170                                                                           <uri>http://www.thehindu.com/multimedia/dynamic/00029/IN05_DARWIN_29896f.jpg</uri>
 171                                                                           <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/e/e5/Steve_Jobs_WWDC07.jpg/170px-Steve_Jobs_WWDC07.jpg</uri>
 172                                                                         </taxonomy>
 173                                                                       </clade>
 174                                                                       <clade>
 175                                                                         <taxonomy>
 176                                                                           <id provider="uniprot">9598</id>
 177                                                                           <code>PANTR</code>
 178                                                                           <scientific_name>Pan troglodytes</scientific_name>
 179                                                                           <common_name>Chimpanzee</common_name>
 180                                                                           <rank>species</rank>
 181                                                                           <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/8/8b/Schimpanse_zoo-leipig.jpg/800px-Schimpanse_zoo-leipig.jpg</uri>
 182                                                                         </taxonomy>
 183                                                                       </clade>
 184                                                                     </clade>
 185                                                                     <clade>
 186                                                                       <taxonomy>
 187                                                                         <id provider="uniprot">9595</id>
 188                                                                         <code>GORGO</code>
 189                                                                         <scientific_name>Gorilla gorilla gorilla</scientific_name>
 190                                                                         <common_name>Western lowland gorilla</common_name>
 191                                                                         <rank>subspecies</rank>
 192                                                                         <uri>http://upload.wikimedia.org/wikipedia/commons/c/c7/Stavenn_Gorilla_gorilla_00.jpg</uri>
 193                                                                       </taxonomy>
 194                                                                     </clade>
 195                                                                   </clade>
 196                                                                   <clade>
 197                                                                     <taxonomy>
 198                                                                       <id provider="uniprot">9601</id>
 199                                                                       <code>PONAB</code>
 200                                                                       <scientific_name>Pongo abelii</scientific_name>
 201                                                                       <common_name>Sumatran orangutan</common_name>
 202                                                                       <synonym>Pongo pygmaeus abelii</synonym>
 203                                                                       <rank>species</rank>
 204                                                                       <uri>http://www.kidszoo.org/images/animals/orangutan.jpg</uri>
 205                                                                     </taxonomy>
 206                                                                   </clade>
 207                                                                 </clade>
 208                                                                 <clade>
 209                                                                   <taxonomy>
 210                                                                     <id provider="uniprot">61853</id>
 211                                                                     <code>NOMLE</code>
 212                                                                     <scientific_name>Nomascus leucogenys</scientific_name>
 213                                                                     <common_name>Northern white-cheeked gibbon</common_name>
 214                                                                     <synonym>Hylobates leucogenys</synonym>
 215                                                                     <synonym>Hylobates concolor leucogenys</synonym>
 216                                                                     <rank>species</rank>
 217                                                                     <uri>http://uswest.ensembl.org/img/species/pic_Nomascus_leucogenys.png</uri>
 218                                                                     <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/1/1b/Hylobates_concolor2.jpg/450px-Hylobates_concolor2.jpg</uri>
 219                                                                   </taxonomy>
 220                                                                 </clade>
 221                                                               </clade>
 222                                                               <clade>
 223                                                                 <taxonomy>
 224                                                                   <id provider="uniprot">9528</id>
 225                                                                   <scientific_name>Cercopithecinae</scientific_name>
 226                                                                   <rank>subfamily</rank>
 227                                                                 </taxonomy>
 228                                                                 <clade>
 229                                                                   <taxonomy>
 230                                                                     <id provider="uniprot">9544</id>
 231                                                                     <code>MACMU</code>
 232                                                                     <scientific_name>Macaca mulatta</scientific_name>
 233                                                                     <common_name>Rhesus macaque</common_name>
 234                                                                     <rank>species</rank>
 235                                                                     <uri>http://www.biolib.cz/IMG/GAL/39329.jpg</uri>
 236                                                                   </taxonomy>
 237                                                                 </clade>
 238                                                                 <clade>
 239                                                                   <taxonomy>
 240                                                                     <id provider="uniprot">9557</id>
 241                                                                     <code>PAPHA</code>
 242                                                                     <scientific_name>Papio hamadryas</scientific_name>
 243                                                                     <common_name>Hamadryas baboon</common_name>
 244                                                                     <rank>species</rank>
 245                                                                     <uri>http://pin.primate.wisc.edu/fs/sheets/images/227lg.jpg</uri>
 246                                                                   </taxonomy>
 247                                                                 </clade>
 248                                                               </clade>
 249                                                             </clade>
 250                                                             <clade>
 251                                                               <taxonomy>
 252                                                                 <id provider="uniprot">9483</id>
 253                                                                 <code>CALJA</code>
 254                                                                 <scientific_name>Callithrix jacchus</scientific_name>
 255                                                                 <common_name>White-tufted-ear marmoset</common_name>
 256                                                                 <synonym>Callithrix jacchus jacchus</synonym>
 257                                                                 <rank>species</rank>
 258                                                                 <uri>http://www.arthurgrosset.com/mammals/photos/caljac28086.jpg</uri>
 259                                                               </taxonomy>
 260                                                             </clade>
 261                                                           </clade>
 262                                                           <clade>
 263                                                             <taxonomy>
 264                                                               <id provider="uniprot">9478</id>
 265                                                               <code>TARSY</code>
 266                                                               <scientific_name>Tarsius syrichta</scientific_name>
 267                                                               <common_name>Philippine tarsier</common_name>
 268                                                               <rank>species</rank>
 269                                                               <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0408/1425.jpeg</uri>
 270                                                             </taxonomy>
 271                                                           </clade>
 272                                                         </clade>
 273                                                         <clade>
 274                                                           <taxonomy>
 275                                                             <id provider="uniprot">376911</id>
 276                                                             <scientific_name>Strepsirrhini</scientific_name>
 277                                                             <rank>suborder</rank>
 278                                                           </taxonomy>
 279                                                           <clade>
 280                                                             <taxonomy>
 281                                                               <id provider="uniprot">30611</id>
 282                                                               <code>OTOGA</code>
 283                                                               <scientific_name>Otolemur garnettii</scientific_name>
 284                                                               <common_name>Garnett&apos;s greater bushbaby</common_name>
 285                                                               <synonym>Galago garnetti</synonym>
 286                                                               <synonym>Small-eared galago</synonym>
 287                                                               <synonym>Garnett&apos;s greater bushbaby</synonym>
 288                                                               <rank>species</rank>
 289                                                               <uri>http://www.mbweni.com/images/Mbweni%20Images/naturetrail/small-earedgalago.jpg</uri>
 290                                                             </taxonomy>
 291                                                           </clade>
 292                                                           <clade>
 293                                                             <taxonomy>
 294                                                               <id provider="uniprot">30608</id>
 295                                                               <code>MICMU</code>
 296                                                               <scientific_name>Microcebus murinus</scientific_name>
 297                                                               <common_name>Lesser mouse lemur</common_name>
 298                                                               <rank>species</rank>
 299                                                               <uri>http://daniel.montagnon.pagesperso-orange.fr/images/MicrocbusMurinus.jpg</uri>
 300                                                             </taxonomy>
 301                                                           </clade>
 302                                                         </clade>
 303                                                       </clade>
 304                                                       <clade>
 305                                                         <taxonomy>
 306                                                           <id provider="uniprot">37347</id>
 307                                                           <code>TUPBE</code>
 308                                                           <scientific_name>Tupaia belangeri</scientific_name>
 309                                                           <common_name>Common tree shrew</common_name>
 310                                                           <synonym>Tupaia glis belangeri</synonym>
 311                                                           <rank>species</rank>
 312                                                           <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/4/44/Tupaia_belangeri.JPG/800px-Tupaia_belangeri.JPG</uri>
 313                                                         </taxonomy>
 314                                                       </clade>
 315                                                     </clade>
 316                                                     <clade>
 317                                                       <taxonomy>
 318                                                         <id provider="uniprot">314147</id>
 319                                                         <scientific_name>Glires</scientific_name>
 320                                                         <common_name>Rodents and rabbits</common_name>
 321                                                       </taxonomy>
 322                                                       <clade>
 323                                                         <taxonomy>
 324                                                           <id provider="uniprot">9989</id>
 325                                                           <scientific_name>Rodentia</scientific_name>
 326                                                           <rank>order</rank>
 327                                                         </taxonomy>
 328                                                         <clade>
 329                                                           <name>Ctenohystrica &amp; Mouse-related clade</name>
 330                                                           <reference doi="10.1186/1471-2148-9-71">
 331                                                             <desc>Rodent phylogeny revised: analysis of six nuclear genes from all major rodent clades.</desc>
 332                                                           </reference>
 333                                                           <clade>
 334                                                             <taxonomy>
 335                                                               <common_name>Mouse-related clade</common_name>
 336                                                             </taxonomy>
 337                                                             <clade>
 338                                                               <taxonomy>
 339                                                                 <id provider="uniprot">337687</id>
 340                                                                 <scientific_name>Muroidea</scientific_name>
 341                                                               </taxonomy>
 342                                                               <clade>
 343                                                                 <taxonomy>
 344                                                                   <id provider="uniprot">39107</id>
 345                                                                   <scientific_name>Murinae</scientific_name>
 346                                                                   <rank>subfamily</rank>
 347                                                                 </taxonomy>
 348                                                                 <clade>
 349                                                                   <taxonomy>
 350                                                                     <id provider="uniprot">10090</id>
 351                                                                     <code>MOUSE</code>
 352                                                                     <scientific_name>Mus musculus</scientific_name>
 353                                                                     <common_name>Mouse</common_name>
 354                                                                     <rank>species</rank>
 355                                                                     <uri>http://www.zoologi.no/patlas/images/husmus-RS.jpg</uri>
 356                                                                   </taxonomy>
 357                                                                 </clade>
 358                                                                 <clade>
 359                                                                   <taxonomy>
 360                                                                     <id provider="uniprot">10116</id>
 361                                                                     <code>RAT</code>
 362                                                                     <scientific_name>Rattus norvegicus</scientific_name>
 363                                                                     <common_name>Rat</common_name>
 364                                                                     <rank>species</rank>
 365                                                                     <uri>http://upload.wikimedia.org/wikipedia/commons/0/01/Rattus_norvegicus_1.jpg</uri>
 366                                                                   </taxonomy>
 367                                                                 </clade>
 368                                                               </clade>
 369                                                               <clade>
 370                                                                 <taxonomy>
 371                                                                   <id provider="uniprot">10036</id>
 372                                                                   <code>MESAU</code>
 373                                                                   <scientific_name>Mesocricetus auratus</scientific_name>
 374                                                                   <common_name>Golden hamster</common_name>
 375                                                                   <rank>species</rank>
 376                                                                   <uri>http://www.zipcodezoo.com/hp350/Mesocricetus_auratus_0.jpg</uri>
 377                                                                 </taxonomy>
 378                                                               </clade>
 379                                                             </clade>
 380                                                             <clade>
 381                                                               <taxonomy>
 382                                                                 <id provider="uniprot">10020</id>
 383                                                                 <code>DIPOR</code>
 384                                                                 <scientific_name>Dipodomys ordii</scientific_name>
 385                                                                 <common_name>Ord&apos;s kangaroo rat</common_name>
 386                                                                 <rank>species</rank>
 387                                                                 <uri>http://www.nsrl.ttu.edu/tmot1/images/dipoordi.jpg</uri>
 388                                                               </taxonomy>
 389                                                             </clade>
 390                                                           </clade>
 391                                                           <clade>
 392                                                             <taxonomy>
 393                                                               <id provider="uniprot">10141</id>
 394                                                               <code>CAVPO</code>
 395                                                               <scientific_name>Cavia porcellus</scientific_name>
 396                                                               <common_name>Guinea pig</common_name>
 397                                                               <rank>species</rank>
 398                                                               <uri>http://upload.wikimedia.org/wikipedia/commons/7/77/Guinea_1.jpg</uri>
 399                                                             </taxonomy>
 400                                                           </clade>
 401                                                         </clade>
 402                                                         <clade>
 403                                                           <taxonomy>
 404                                                             <id provider="uniprot">43179</id>
 405                                                             <code>SPETR</code>
 406                                                             <scientific_name>Spermophilus tridecemlineatus</scientific_name>
 407                                                             <common_name>Thirteen-lined ground squirrel</common_name>
 408                                                             <synonym>Ictidomys tridecemlineatus</synonym>
 409                                                             <rank>species</rank>
 410                                                             <uri>http://animaldiversity.ummz.umich.edu/site/resources/phil_myers/ADW_mammals/Rodentia/Spermophilus4345.jpg/medium.jpg</uri>
 411                                                           </taxonomy>
 412                                                         </clade>
 413                                                       </clade>
 414                                                       <clade>
 415                                                         <taxonomy>
 416                                                           <id provider="uniprot">9975</id>
 417                                                           <scientific_name>Lagomorpha</scientific_name>
 418                                                           <common_name>Rabbits, hares, pikas</common_name>
 419                                                           <rank>order</rank>
 420                                                         </taxonomy>
 421                                                         <clade>
 422                                                           <taxonomy>
 423                                                             <id provider="uniprot">9986</id>
 424                                                             <code>RABIT</code>
 425                                                             <scientific_name>Oryctolagus cuniculus</scientific_name>
 426                                                             <common_name>Rabbit</common_name>
 427                                                             <rank>species</rank>
 428                                                             <uri>http://www.animalpictures.tk/wp-content/uploads/pictures/pictures-of-rabbit-pictures-818.jpg</uri>
 429                                                             <uri>http://greennature.com/gallery/farm-animal-pictures/albino_rabbit.jpg</uri>
 430                                                           </taxonomy>
 431                                                         </clade>
 432                                                         <clade>
 433                                                           <taxonomy>
 434                                                             <id provider="uniprot">9978</id>
 435                                                             <code>OCHPR</code>
 436                                                             <scientific_name>Ochotona princeps</scientific_name>
 437                                                             <common_name>Southern American pika</common_name>
 438                                                             <rank>species</rank>
 439                                                             <uri>http://upload.wikimedia.org/wikipedia/commons/3/3b/Ochotona_princeps.jpg</uri>
 440                                                           </taxonomy>
 441                                                         </clade>
 442                                                       </clade>
 443                                                     </clade>
 444                                                   </clade>
 445                                                   <clade>
 446                                                     <taxonomy>
 447                                                       <id provider="uniprot">314145</id>
 448                                                       <scientific_name>Laurasiatheria</scientific_name>
 449                                                       <rank>superorder</rank>
 450                                                     </taxonomy>
 451                                                     <clade>
 452                                                       <taxonomy>
 453                                                         <scientific_name>Scrotifera</scientific_name>
 454                                                       </taxonomy>
 455                                                       <clade>
 456                                                         <name>Perissodactyla &amp; Cetartiodactyla &amp; Chiroptera</name>
 457                                                         <clade>
 458                                                           <name>Perissodactyla &amp; Cetartiodactyla</name>
 459                                                           <clade>
 460                                                             <taxonomy>
 461                                                               <id provider="uniprot">91561</id>
 462                                                               <scientific_name>Cetartiodactyla</scientific_name>
 463                                                               <common_name>Even-toed ungulates</common_name>
 464                                                             </taxonomy>
 465                                                             <clade>
 466                                                               <name>Cetruminantia &amp; Suina</name>
 467                                                               <clade>
 468                                                                 <taxonomy>
 469                                                                   <scientific_name>Cetruminantia</scientific_name>
 470                                                                 </taxonomy>
 471                                                                 <clade>
 472                                                                   <taxonomy>
 473                                                                     <id provider="uniprot">9895</id>
 474                                                                     <scientific_name>Bovidae</scientific_name>
 475                                                                     <rank>family</rank>
 476                                                                   </taxonomy>
 477                                                                   <clade>
 478                                                                     <taxonomy>
 479                                                                       <id provider="uniprot">9913</id>
 480                                                                       <code>BOVIN</code>
 481                                                                       <scientific_name>Bos taurus</scientific_name>
 482                                                                       <common_name>Bovine</common_name>
 483                                                                       <synonym>Bos bovis</synonym>
 484                                                                       <rank>species</rank>
 485                                                                       <uri>http://www.biolib.cz/IMG/GAL/18578.jpg</uri>
 486                                                                     </taxonomy>
 487                                                                   </clade>
 488                                                                   <clade>
 489                                                                     <taxonomy>
 490                                                                       <id provider="uniprot">9940</id>
 491                                                                       <code>SHEEP</code>
 492                                                                       <scientific_name>Ovis aries</scientific_name>
 493                                                                       <common_name>Sheep</common_name>
 494                                                                       <rank>species</rank>
 495                                                                       <uri>http://animaldiversity.ummz.umich.edu/site/resources/james_dowlinghealey/blacksheep.jpg/medium.jpg</uri>
 496                                                                     </taxonomy>
 497                                                                   </clade>
 498                                                                 </clade>
 499                                                                 <clade>
 500                                                                   <taxonomy>
 501                                                                     <id provider="uniprot">9721</id>
 502                                                                     <scientific_name>Cetacea</scientific_name>
 503                                                                     <common_name>Whales</common_name>
 504                                                                     <rank>order</rank>
 505                                                                   </taxonomy>
 506                                                                   <clade>
 507                                                                     <taxonomy>
 508                                                                       <id provider="uniprot">9739</id>
 509                                                                       <code>TURTR</code>
 510                                                                       <scientific_name>Tursiops truncatus</scientific_name>
 511                                                                       <common_name>Atlantic bottle-nosed dolphin</common_name>
 512                                                                       <synonym>Delphinus truncatus</synonym>
 513                                                                       <rank>species</rank>
 514                                                                       <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/a/a6/Bottlenose_Dolphin_KSC04pd0178.jpg/800px-Bottlenose_Dolphin_KSC04pd0178.jpg</uri>
 515                                                                     </taxonomy>
 516                                                                   </clade>
 517                                                                   <clade>
 518                                                                     <taxonomy>
 519                                                                       <id provider="uniprot">9771</id>
 520                                                                       <code>BALMU</code>
 521                                                                       <scientific_name>Balaenoptera musculus</scientific_name>
 522                                                                       <common_name>Blue whale</common_name>
 523                                                                       <rank>species</rank>
 524                                                                       <uri>http://2.bp.blogspot.com/_W90V87w3sr8/TT63uRT_U9I/AAAAAAAAAo8/to9O8zEeo7k/s1600/bluewhale.jpg</uri>
 525                                                                     </taxonomy>
 526                                                                   </clade>
 527                                                                 </clade>
 528                                                               </clade>
 529                                                               <clade>
 530                                                                 <taxonomy>
 531                                                                   <id provider="uniprot">9823</id>
 532                                                                   <code>PIG</code>
 533                                                                   <scientific_name>Sus scrofa</scientific_name>
 534                                                                   <common_name>Pig</common_name>
 535                                                                   <rank>species</rank>
 536                                                                   <uri>http://www.batraciens-reptiles.com/sus%20scrofa2.jpg</uri>
 537                                                                 </taxonomy>
 538                                                               </clade>
 539                                                             </clade>
 540                                                             <clade>
 541                                                               <taxonomy>
 542                                                                 <id provider="uniprot">30538</id>
 543                                                                 <code>LAMPA</code>
 544                                                                 <scientific_name>Lama guanicoe pacos</scientific_name>
 545                                                                 <common_name>Alpaca</common_name>
 546                                                                 <synonym>Lama pacos</synonym>
 547                                                                 <rank>species</rank>
 548                                                                 <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/8/8f/A_group_of_Alpacas_on_a_property_including_cria.jpg/800px-A_group_of_Alpacas_on_a_property_including_cria.jpg</uri>
 549                                                               </taxonomy>
 550                                                             </clade>
 551                                                           </clade>
 552                                                           <clade>
 553                                                             <taxonomy>
 554                                                               <id provider="uniprot">9796</id>
 555                                                               <code>HORSE</code>
 556                                                               <scientific_name>Equus caballus</scientific_name>
 557                                                               <common_name>Horse</common_name>
 558                                                               <rank>species</rank>
 559                                                               <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0801/0088.jpeg</uri>
 560                                                             </taxonomy>
 561                                                           </clade>
 562                                                         </clade>
 563                                                         <clade>
 564                                                           <taxonomy>
 565                                                             <id provider="uniprot">9397</id>
 566                                                             <scientific_name>Chiroptera</scientific_name>
 567                                                             <common_name>Bats</common_name>
 568                                                             <rank>order</rank>
 569                                                           </taxonomy>
 570                                                           <clade>
 571                                                             <taxonomy>
 572                                                               <id provider="uniprot">59463</id>
 573                                                               <code>MYOLU</code>
 574                                                               <scientific_name>Myotis lucifugus</scientific_name>
 575                                                               <common_name>Little brown bat</common_name>
 576                                                               <rank>species</rank>
 577                                                               <uri>http://biology.lakeheadu.ca/uploads/Nature_photography/brown_bat.jpg</uri>
 578                                                             </taxonomy>
 579                                                           </clade>
 580                                                           <clade>
 581                                                             <taxonomy>
 582                                                               <id provider="uniprot">132908</id>
 583                                                               <code>PTEVA</code>
 584                                                               <scientific_name>Pteropus vampyrus</scientific_name>
 585                                                               <common_name>Large flying fox</common_name>
 586                                                               <rank>species</rank>
 587                                                               <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/5/5e/Pteropus_vampyrus1.jpg/412px-Pteropus_vampyrus1.jpg</uri>
 588                                                             </taxonomy>
 589                                                           </clade>
 590                                                         </clade>
 591                                                       </clade>
 592                                                       <clade>
 593                                                         <name>Carnivora</name>
 594                                                         <taxonomy>
 595                                                           <id provider="uniprot">33554</id>
 596                                                           <scientific_name>Carnivora</scientific_name>
 597                                                           <rank>order</rank>
 598                                                         </taxonomy>
 599                                                         <clade>
 600                                                           <taxonomy>
 601                                                             <id provider="uniprot">379584</id>
 602                                                             <scientific_name>Caniformia</scientific_name>
 603                                                             <rank>suborder</rank>
 604                                                           </taxonomy>
 605                                                           <clade>
 606                                                             <name>CANFA</name>
 607                                                             <taxonomy>
 608                                                               <id provider="uniprot">9615</id>
 609                                                               <code>CANFA</code>
 610                                                               <scientific_name>Canis familiaris</scientific_name>
 611                                                               <common_name>Dog</common_name>
 612                                                               <synonym>Canis lupus familiaris</synonym>
 613                                                               <rank>subspecies</rank>
 614                                                               <uri>http://upload.wikimedia.org/wikipedia/commons/a/ab/Wikilabrador_jardin.JPG</uri>
 615                                                             </taxonomy>
 616                                                           </clade>
 617                                                           <clade>
 618                                                             <taxonomy>
 619                                                               <id provider="uniprot">9646</id>
 620                                                               <code>AILME</code>
 621                                                               <scientific_name>Ailuropoda melanoleuca</scientific_name>
 622                                                               <common_name>Giant panda</common_name>
 623                                                               <rank>species</rank>
 624                                                               <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/3/3c/Giant_Panda_2004-03-2.jpg/800px-Giant_Panda_2004-03-2.jpg</uri>
 625                                                             </taxonomy>
 626                                                           </clade>
 627                                                         </clade>
 628                                                         <clade>
 629                                                           <name>FELCA</name>
 630                                                           <taxonomy>
 631                                                             <id provider="uniprot">9685</id>
 632                                                             <code>FELCA</code>
 633                                                             <scientific_name>Felis catus</scientific_name>
 634                                                             <common_name>Cat</common_name>
 635                                                             <synonym>Felis silvestris catus</synonym>
 636                                                             <rank>species</rank>
 637                                                             <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/9/9b/Domestic_cat_cropped.jpg/755px-Domestic_cat_cropped.jpg</uri>
 638                                                           </taxonomy>
 639                                                         </clade>
 640                                                       </clade>
 641                                                     </clade>
 642                                                     <clade>
 643                                                       <taxonomy>
 644                                                         <id provider="uniprot">9362</id>
 645                                                         <scientific_name>Insectivora</scientific_name>
 646                                                         <common_name>hedgehogs, shrews, moles and others</common_name>
 647                                                         <rank>order</rank>
 648                                                       </taxonomy>
 649                                                       <clade>
 650                                                         <taxonomy>
 651                                                           <id provider="uniprot">9365</id>
 652                                                           <code>ERIEU</code>
 653                                                           <scientific_name>Erinaceus europaeus</scientific_name>
 654                                                           <common_name>Western European hedgehog</common_name>
 655                                                           <rank>species</rank>
 656                                                           <uri>http://upload.wikimedia.org/wikipedia/commons/d/d4/Igel01.jpg</uri>
 657                                                         </taxonomy>
 658                                                       </clade>
 659                                                       <clade>
 660                                                         <taxonomy>
 661                                                           <id provider="uniprot">42254</id>
 662                                                           <code>SORAR</code>
 663                                                           <scientific_name>Sorex araneus</scientific_name>
 664                                                           <common_name>Eurasian common shrew</common_name>
 665                                                           <synonym>European shrew</synonym>
 666                                                           <rank>species</rank>
 667                                                           <uri>http://www.batraciens-reptiles.com/musaraigne2.jpg</uri>
 668                                                         </taxonomy>
 669                                                       </clade>
 670                                                     </clade>
 671                                                   </clade>
 672                                                 </clade>
 673                                                 <clade>
 674                                                   <taxonomy>
 675                                                     <scientific_name>Atlantogenata</scientific_name>
 676                                                   </taxonomy>
 677                                                   <clade>
 678                                                     <taxonomy>
 679                                                       <id provider="uniprot">311790</id>
 680                                                       <scientific_name>Afrotheria</scientific_name>
 681                                                       <rank>superorder</rank>
 682                                                     </taxonomy>
 683                                                     <clade>
 684                                                       <taxonomy>
 685                                                         <scientific_name>Paenungulata</scientific_name>
 686                                                       </taxonomy>
 687                                                       <clade>
 688                                                         <taxonomy>
 689                                                           <id provider="uniprot">9785</id>
 690                                                           <code>LOXAF</code>
 691                                                           <scientific_name>Loxodonta africana</scientific_name>
 692                                                           <common_name>African savanna elephant</common_name>
 693                                                           <rank>species</rank>
 694                                                           <uri>http://animaldiversity.ummz.umich.edu/site/resources/susan_hoffman/elephants.jpg</uri>
 695                                                         </taxonomy>
 696                                                       </clade>
 697                                                       <clade>
 698                                                         <taxonomy>
 699                                                           <id provider="uniprot">9813</id>
 700                                                           <code>PROCA</code>
 701                                                           <scientific_name>Procavia capensis</scientific_name>
 702                                                           <common_name>Cape hyrax</common_name>
 703                                                           <synonym>Rock dassie</synonym>
 704                                                           <rank>species</rank>
 705                                                           <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/1206/0460.jpeg</uri>
 706                                                         </taxonomy>
 707                                                       </clade>
 708                                                     </clade>
 709                                                     <clade>
 710                                                       <taxonomy>
 711                                                         <id provider="uniprot">9371</id>
 712                                                         <code>ECHTE</code>
 713                                                         <scientific_name>Echinops telfairi</scientific_name>
 714                                                         <common_name>Lesser hedgehog tenrec</common_name>
 715                                                         <rank>species</rank>
 716                                                         <uri>http://animaldiversity.ummz.umich.edu/site/resources/david_kupitz/etelfairi.jpg</uri>
 717                                                       </taxonomy>
 718                                                     </clade>
 719                                                   </clade>
 720                                                   <clade>
 721                                                     <taxonomy>
 722                                                       <id provider="uniprot">9348</id>
 723                                                       <scientific_name>Xenarthra</scientific_name>
 724                                                       <synonym>Edentata</synonym>
 725                                                       <rank>superorder</rank>
 726                                                     </taxonomy>
 727                                                     <clade>
 728                                                       <taxonomy>
 729                                                         <id provider="uniprot">9358</id>
 730                                                         <code>CHOHO</code>
 731                                                         <scientific_name>Choloepus hoffmanni</scientific_name>
 732                                                         <common_name>Hoffmann&apos;s two-fingered sloth</common_name>
 733                                                         <rank>species</rank>
 734                                                         <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/8/89/Sloth8.jpg/800px-Sloth8.jpg</uri>
 735                                                       </taxonomy>
 736                                                     </clade>
 737                                                     <clade>
 738                                                       <taxonomy>
 739                                                         <id provider="uniprot">9361</id>
 740                                                         <code>DASNO</code>
 741                                                         <scientific_name>Dasypus novemcinctus</scientific_name>
 742                                                         <common_name>Nine-banded armadillo</common_name>
 743                                                         <rank>species</rank>
 744                                                         <uri>http://images.enature.com/mammals/mammals_l/ma0154_1l.jpg</uri>
 745                                                         <uri>http://anthropometaphors.files.wordpress.com/2008/11/nine-banded-armadillo41.jpg</uri>
 746                                                       </taxonomy>
 747                                                     </clade>
 748                                                   </clade>
 749                                                 </clade>
 750                                               </clade>
 751                                               <clade>
 752                                                 <taxonomy>
 753                                                   <id provider="uniprot">9263</id>
 754                                                   <scientific_name>Metatheria</scientific_name>
 755                                                   <common_name>Marsupials</common_name>
 756                                                 </taxonomy>
 757                                                 <distribution>
 758                                                   <point geodetic_datum="?" alt_unit="?">
 759                                                     <lat>0</lat>
 760                                                     <long>0</long>
 761                                                     <alt>0</alt>
 762                                                   </point>
 763                                                 </distribution>
 764                                                 <reference doi="10.1016/j.ympev.2004.05.004">
 765                                                   <desc>First combined cladistic analysis of marsupial mammal interrelationships</desc>
 766                                                 </reference>
 767                                                 <reference>
 768                                                 </reference>
 769                                                 <clade>
 770                                                   <name>MONDO</name>
 771                                                   <taxonomy>
 772                                                     <id provider="uniprot">13616</id>
 773                                                     <code>MONDO</code>
 774                                                     <scientific_name>Monodelphis domestica</scientific_name>
 775                                                     <common_name>Short-tailed gray opossum</common_name>
 776                                                     <rank>species</rank>
 777                                                     <uri>http://animaldiversity.ummz.umich.edu/site/resources/phil_myers/classic/monodelphis.jpg/medium.jpg</uri>
 778                                                   </taxonomy>
 779                                                 </clade>
 780                                                 <clade>
 781                                                   <taxonomy>
 782                                                     <scientific_name>Eometatheria</scientific_name>
 783                                                   </taxonomy>
 784                                                   <clade>
 785                                                     <taxonomy>
 786                                                       <id provider="uniprot">9315</id>
 787                                                       <code>MACEU</code>
 788                                                       <scientific_name>Macropus eugenii</scientific_name>
 789                                                       <common_name>Tammar wallaby</common_name>
 790                                                       <rank>species</rank>
 791                                                       <uri>http://upload.wikimedia.org/wikipedia/commons/d/de/Macropus_eugenii.jpg</uri>
 792                                                     </taxonomy>
 793                                                   </clade>
 794                                                   <clade>
 795                                                     <taxonomy>
 796                                                       <id provider="uniprot">9305</id>
 797                                                       <code>SARHA</code>
 798                                                       <scientific_name>Sarcophilus harrisii</scientific_name>
 799                                                       <common_name>Tasmanian devil</common_name>
 800                                                       <synonym>Sarcophilus laniarius</synonym>
 801                                                       <rank>species</rank>
 802                                                       <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/3/3b/Sarcophilus_harrisii_-Healesville_Sanctuary-8a.jpg/727px-Sarcophilus_harrisii_-Healesville_Sanctuary-8a.jpg</uri>
 803                                                     </taxonomy>
 804                                                   </clade>
 805                                                 </clade>
 806                                               </clade>
 807                                             </clade>
 808                                             <clade>
 809                                               <name>ORNAN</name>
 810                                               <taxonomy>
 811                                                 <id provider="uniprot">9258</id>
 812                                                 <code>ORNAN</code>
 813                                                 <scientific_name>Ornithorhynchus anatinus</scientific_name>
 814                                                 <common_name>Duckbill platypus</common_name>
 815                                                 <rank>species</rank>
 816                                                 <uri>http://www.biolib.cz/IMG/GAL/39610.jpg</uri>
 817                                               </taxonomy>
 818                                             </clade>
 819                                           </clade>
 820                                           <clade>
 821                                             <name>Diapsida</name>
 822                                             <clade>
 823                                               <name>Neognathae</name>
 824                                               <taxonomy>
 825                                                 <id provider="uniprot">8825</id>
 826                                                 <scientific_name>Neognathae</scientific_name>
 827                                                 <rank>superorder</rank>
 828                                               </taxonomy>
 829                                               <clade>
 830                                                 <name>Phasianidae &amp; Anatidae (waterfowl)</name>
 831                                                 <clade>
 832                                                   <taxonomy>
 833                                                     <id provider="uniprot">9005</id>
 834                                                     <scientific_name>Phasianidae</scientific_name>
 835                                                     <rank>family</rank>
 836                                                   </taxonomy>
 837                                                   <clade>
 838                                                     <name>CHICK</name>
 839                                                     <taxonomy>
 840                                                       <id provider="uniprot">9031</id>
 841                                                       <code>CHICK</code>
 842                                                       <scientific_name>Gallus gallus</scientific_name>
 843                                                       <common_name>Chicken</common_name>
 844                                                       <synonym>Gallus domesticus</synonym>
 845                                                       <rank>species</rank>
 846                                                       <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/f/f8/Rooster04_adjusted.jpg/800px-Rooster04_adjusted.jpg</uri>
 847                                                     </taxonomy>
 848                                                   </clade>
 849                                                   <clade>
 850                                                     <taxonomy>
 851                                                       <id provider="uniprot">9103</id>
 852                                                       <code>MELGA</code>
 853                                                       <scientific_name>Meleagris gallopavo</scientific_name>
 854                                                       <common_name>Common turkey</common_name>
 855                                                       <rank>species</rank>
 856                                                       <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0205/0858.jpeg</uri>
 857                                                     </taxonomy>
 858                                                   </clade>
 859                                                 </clade>
 860                                                 <clade>
 861                                                   <taxonomy>
 862                                                     <id provider="uniprot">8839</id>
 863                                                     <code>ANAPL</code>
 864                                                     <scientific_name>Anas platyrhynchos</scientific_name>
 865                                                     <common_name>Domestic duck</common_name>
 866                                                     <synonym>Anas boschas</synonym>
 867                                                     <rank>species</rank>
 868                                                     <uri>http://content.ornith.cornell.edu/UEWebApp/images/MPR_070302_100009_L.jpg</uri>
 869                                                   </taxonomy>
 870                                                 </clade>
 871                                               </clade>
 872                                               <clade>
 873                                                 <name>TAEGU</name>
 874                                                 <taxonomy>
 875                                                   <id provider="uniprot">59729</id>
 876                                                   <code>TAEGU</code>
 877                                                   <scientific_name>Taeniopygia guttata</scientific_name>
 878                                                   <common_name>Zebra finch</common_name>
 879                                                   <synonym>Poephila guttata</synonym>
 880                                                   <rank>species</rank>
 881                                                   <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/8/84/Taeniopygia_guttata_-_front_view_-_dundee_wildlife_park.jpg/355px-Taeniopygia_guttata_-_front_view_-_dundee_wildlife_park.jpg</uri>
 882                                                 </taxonomy>
 883                                               </clade>
 884                                             </clade>
 885                                             <clade>
 886                                               <name>ANOCA</name>
 887                                               <taxonomy>
 888                                                 <id provider="eol">795869</id>
 889                                                 <code>ANOCA</code>
 890                                                 <scientific_name>Anolis carolinensis</scientific_name>
 891                                                 <authority>Voigt, 1832</authority>
 892                                                 <common_name>Green anole</common_name>
 893                                                 <synonym>American chameleon</synonym>
 894                                                 <rank>species</rank>
 895                                                 <uri>http://content61.eol.org/content/2009/09/20/01/05528_580_360.jpg</uri>
 896                                                 <uri>http://content61.eol.org/content/2008/10/08/13/66818_580_360.jpg</uri>
 897                                               </taxonomy>
 898                                             </clade>
 899                                           </clade>
 900                                         </clade>
 901                                         <clade>
 902                                           <name>XENTR</name>
 903                                           <taxonomy>
 904                                             <id provider="uniprot">8364</id>
 905                                             <code>XENTR</code>
 906                                             <scientific_name>Xenopus tropicalis</scientific_name>
 907                                             <common_name>Western clawed frog</common_name>
 908                                             <synonym>Silurana tropicalis</synonym>
 909                                             <rank>species</rank>
 910                                             <uri>http://genoweb.univ-rennes1.fr/OGP/xenopus%20tropicalis.jpg</uri>
 911                                           </taxonomy>
 912                                         </clade>
 913                                       </clade>
 914                                       <clade>
 915                                         <name>Teleostei</name>
 916                                         <taxonomy>
 917                                           <id provider="uniprot">32443</id>
 918                                           <scientific_name>Teleostei</scientific_name>
 919                                         </taxonomy>
 920                                         <clade>
 921                                           <taxonomy>
 922                                             <id provider="uniprot">123368</id>
 923                                             <scientific_name>Acanthomorpha</scientific_name>
 924                                           </taxonomy>
 925                                           <clade>
 926                                             <taxonomy>
 927                                               <id provider="uniprot">32485</id>
 928                                               <scientific_name>Percomorpha</scientific_name>
 929                                             </taxonomy>
 930                                             <clade>
 931                                               <name>Smegmamorpha</name>
 932                                               <clade>
 933                                                 <name>GASAC</name>
 934                                                 <taxonomy>
 935                                                   <id provider="uniprot">69293</id>
 936                                                   <code>GASAC</code>
 937                                                   <scientific_name>Gasterosteus aculeatus</scientific_name>
 938                                                   <common_name>Three-spined stickleback</common_name>
 939                                                   <rank>species</rank>
 940                                                   <uri>http://www.fiskbasen.se/images/gasterosteus_aculeatus.jpg</uri>
 941                                                 </taxonomy>
 942                                               </clade>
 943                                               <clade>
 944                                                 <name>ORYLA</name>
 945                                                 <taxonomy>
 946                                                   <id provider="uniprot">8090</id>
 947                                                   <code>ORYLA</code>
 948                                                   <scientific_name>Oryzias latipes</scientific_name>
 949                                                   <common_name>Medaka fish</common_name>
 950                                                   <synonym>Japanese ricefish</synonym>
 951                                                   <rank>species</rank>
 952                                                   <uri>http://upload.wikimedia.org/wikipedia/commons/4/49/Nihonmedaka.jpg</uri>
 953                                                 </taxonomy>
 954                                               </clade>
 955                                             </clade>
 956                                             <clade>
 957                                               <taxonomy>
 958                                                 <id provider="uniprot">31031</id>
 959                                                 <scientific_name>Tetraodontidae</scientific_name>
 960                                                 <common_name>puffers</common_name>
 961                                                 <rank>family</rank>
 962                                               </taxonomy>
 963                                               <clade>
 964                                                 <name>FUGRU</name>
 965                                                 <taxonomy>
 966                                                   <id provider="uniprot">31033</id>
 967                                                   <code>FUGRU</code>
 968                                                   <scientific_name>Takifugu rubripes</scientific_name>
 969                                                   <common_name>Japanese pufferfish</common_name>
 970                                                   <synonym>Fugu rubripes</synonym>
 971                                                   <rank>species</rank>
 972                                                   <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/2/25/Fugu_in_Tank.jpg/800px-Fugu_in_Tank.jpg</uri>
 973                                                 </taxonomy>
 974                                               </clade>
 975                                               <clade>
 976                                                 <name>TETNG</name>
 977                                                 <taxonomy>
 978                                                   <id provider="uniprot">99883</id>
 979                                                   <code>TETNG</code>
 980                                                   <scientific_name>Tetraodon nigroviridis</scientific_name>
 981                                                   <common_name>Green puffer</common_name>
 982                                                   <synonym>Chelonodon nigroviridis</synonym>
 983                                                   <rank>species</rank>
 984                                                   <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/b/b6/Tetraodon_nigroviridis_1.jpg/800px-Tetraodon_nigroviridis_1.jpg</uri>
 985                                                 </taxonomy>
 986                                               </clade>
 987                                             </clade>
 988                                           </clade>
 989                                           <clade>
 990                                             <taxonomy>
 991                                               <id provider="uniprot">8049</id>
 992                                               <code>GADMO</code>
 993                                               <scientific_name>Gadus morhua</scientific_name>
 994                                               <common_name>Atlantic cod</common_name>
 995                                               <rank>species</rank>
 996                                               <uri>http://www.marinbi.com/g-morhua.jpg</uri>
 997                                             </taxonomy>
 998                                           </clade>
 999                                         </clade>
1000                                         <clade>
1001                                           <name>DANRE</name>
1002                                           <taxonomy>
1003                                             <id provider="uniprot">7955</id>
1004                                             <code>DANRE</code>
1005                                             <scientific_name>Danio rerio</scientific_name>
1006                                             <common_name>Zebrafish</common_name>
1007                                             <synonym>Brachydanio rerio</synonym>
1008                                             <rank>species</rank>
1009                                             <uri>http://fishbase.org.cn/images/species/Darer_m0.jpg</uri>
1010                                           </taxonomy>
1011                                         </clade>
1012                                       </clade>
1013                                     </clade>
1014                                     <clade>
1015                                       <taxonomy>
1016                                         <id provider="uniprot">7868</id>
1017                                         <code>CALMI</code>
1018                                         <scientific_name>Callorhynchus milii</scientific_name>
1019                                         <common_name>Australian ghost shark</common_name>
1020                                         <synonym>Australian ghost shark</synonym>
1021                                         <rank>species</rank>
1022                                         <uri>http://www.tudiscovery.com/tiburones/que_es/popup_que/asset/07914907646434433_elephant_shark_380x290.jpg</uri>
1023                                       </taxonomy>
1024                                     </clade>
1025                                   </clade>
1026                                   <clade>
1027                                     <taxonomy>
1028                                       <id provider="uniprot">7757</id>
1029                                       <code>PETMA</code>
1030                                       <scientific_name>Petromyzon marinus</scientific_name>
1031                                       <common_name>Sea lamprey</common_name>
1032                                       <rank>species</rank>
1033                                       <uri>http://www.uk-fish.info/pics/sealampray01.jpg</uri>
1034                                     </taxonomy>
1035                                   </clade>
1036                                 </clade>
1037                                 <clade>
1038                                   <name>Urochordata</name>
1039                                   <taxonomy>
1040                                     <id provider="uniprot">7712</id>
1041                                     <scientific_name>Urochordata</scientific_name>
1042                                     <rank>subphylum</rank>
1043                                   </taxonomy>
1044                                   <clade>
1045                                     <taxonomy>
1046                                       <id provider="uniprot">7718</id>
1047                                       <scientific_name>Ciona</scientific_name>
1048                                       <rank>genus</rank>
1049                                     </taxonomy>
1050                                     <clade>
1051                                       <name>CIOIN</name>
1052                                       <taxonomy>
1053                                         <id provider="uniprot">7719</id>
1054                                         <code>CIOIN</code>
1055                                         <scientific_name>Ciona intestinalis</scientific_name>
1056                                         <common_name>Transparent sea squirt</common_name>
1057                                         <synonym>Ascidia intestinalis</synonym>
1058                                         <rank>species</rank>
1059                                         <uri>http://adl.brs.gov.au/marinepests/images/Ciona_intestinalis2.jpg</uri>
1060                                       </taxonomy>
1061                                     </clade>
1062                                     <clade>
1063                                       <name>CIOSA</name>
1064                                       <taxonomy>
1065                                         <id provider="uniprot">51511</id>
1066                                         <code>CIOSA</code>
1067                                         <scientific_name>Ciona savignyi</scientific_name>
1068                                         <common_name>Pacific transparent sea squirt</common_name>
1069                                         <rank>species</rank>
1070                                         <uri>http://www.pnwscuba.com/invasives/photos/ciona4.jpg</uri>
1071                                       </taxonomy>
1072                                     </clade>
1073                                   </clade>
1074                                   <clade>
1075                                     <name>OIKDI</name>
1076                                     <taxonomy>
1077                                       <id provider="ncbi">34765</id>
1078                                       <code>OIKDI</code>
1079                                       <scientific_name>Oikopleura dioica</scientific_name>
1080                                       <common_name>Tunicate</common_name>
1081                                       <rank>species</rank>
1082                                       <uri>http://jellieszone.com/images/oikopleura.jpg</uri>
1083                                     </taxonomy>
1084                                   </clade>
1085                                 </clade>
1086                               </clade>
1087                               <clade>
1088                                 <name>BRAFL</name>
1089                                 <taxonomy>
1090                                   <id provider="uniprot">7739</id>
1091                                   <code>BRAFL</code>
1092                                   <scientific_name>Branchiostoma floridae</scientific_name>
1093                                   <common_name>Florida lancelet</common_name>
1094                                   <synonym>Amphioxus</synonym>
1095                                   <rank>species</rank>
1096                                   <uri>http://genome.jgi-psf.org/Brafl1/Amphioxus-1.jpg</uri>
1097                                 </taxonomy>
1098                               </clade>
1099                             </clade>
1100                             <clade>
1101                               <name>Hemichordata &amp; Echinodermata</name>
1102                               <clade>
1103                                 <name>STRPU</name>
1104                                 <taxonomy>
1105                                   <id provider="uniprot">7668</id>
1106                                   <code>STRPU</code>
1107                                   <scientific_name>Strongylocentrotus purpuratus</scientific_name>
1108                                   <common_name>Purple sea urchin</common_name>
1109                                   <rank>species</rank>
1110                                   <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/f/f4/Strongylocentrotus_purpuratus_1.jpg/724px-Strongylocentrotus_purpuratus_1.jpg</uri>
1111                                 </taxonomy>
1112                               </clade>
1113                               <clade>
1114                                 <name>SACKO</name>
1115                                 <taxonomy>
1116                                   <id provider="uniprot">10224</id>
1117                                   <code>SACKO</code>
1118                                   <scientific_name>Saccoglossus kowalevskii</scientific_name>
1119                                   <authority>Agassiz, 1873</authority>
1120                                   <common_name>Acorn worm</common_name>
1121                                   <rank>species</rank>
1122                                   <uri>http://www.amnh.org/exhibitions/hall_tour/spectrum/specimens/a158.jpg</uri>
1123                                 </taxonomy>
1124                               </clade>
1125                             </clade>
1126                           </clade>
1127                           <clade>
1128                             <name>Protostomia</name>
1129                             <clade>
1130                               <name>Ecdysozoa</name>
1131                               <clade>
1132                                 <taxonomy>
1133                                   <id provider="uniprot">6656</id>
1134                                   <scientific_name>Arthropoda</scientific_name>
1135                                   <rank>phylum</rank>
1136                                 </taxonomy>
1137                                 <clade>
1138                                   <taxonomy>
1139                                     <id provider="uniprot">197563</id>
1140                                     <scientific_name>Mandibulata</scientific_name>
1141                                   </taxonomy>
1142                                   <clade>
1143                                     <name>Pancrustacea</name>
1144                                     <clade>
1145                                       <taxonomy>
1146                                         <id provider="uniprot">33340</id>
1147                                         <scientific_name>Neoptera</scientific_name>
1148                                         <rank>subclass</rank>
1149                                       </taxonomy>
1150                                       <clade>
1151                                         <taxonomy>
1152                                           <id provider="uniprot">33392</id>
1153                                           <scientific_name>Endopterygota</scientific_name>
1154                                           <rank>infraclass</rank>
1155                                         </taxonomy>
1156                                         <clade>
1157                                           <name>Hymenoptera &amp; Lepidoptera &amp; Diptera</name>
1158                                           <clade>
1159                                             <name>Lepidoptera &amp; Diptera</name>
1160                                             <clade>
1161                                               <taxonomy>
1162                                                 <id provider="uniprot">7147</id>
1163                                                 <scientific_name>Diptera</scientific_name>
1164                                                 <rank>order</rank>
1165                                               </taxonomy>
1166                                               <clade>
1167                                                 <taxonomy>
1168                                                   <id provider="uniprot">7157</id>
1169                                                   <scientific_name>Culicidae</scientific_name>
1170                                                   <common_name>mosquitos</common_name>
1171                                                   <rank>family</rank>
1172                                                 </taxonomy>
1173                                                 <clade>
1174                                                   <name>AEDAE</name>
1175                                                   <taxonomy>
1176                                                     <id provider="uniprot">7159</id>
1177                                                     <code>AEDAE</code>
1178                                                     <scientific_name>Aedes aegypti</scientific_name>
1179                                                     <common_name>Yellowfever mosquito</common_name>
1180                                                     <synonym>Culex aegypti</synonym>
1181                                                     <rank>species</rank>
1182                                                     <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/4/48/Aedes_aegypti_biting_human.jpg/757px-Aedes_aegypti_biting_human.jpg</uri>
1183                                                   </taxonomy>
1184                                                 </clade>
1185                                                 <clade>
1186                                                   <name>ANOGA</name>
1187                                                   <taxonomy>
1188                                                     <id provider="uniprot">7165</id>
1189                                                     <code>ANOGA</code>
1190                                                     <scientific_name>Anopheles gambiae</scientific_name>
1191                                                     <common_name>African malaria mosquito</common_name>
1192                                                     <rank>species</rank>
1193                                                     <uri>http://upload.wikimedia.org/wikipedia/commons/e/e9/Anopheles_gambiae_Mosquito.jpg</uri>
1194                                                   </taxonomy>
1195                                                 </clade>
1196                                                 <clade>
1197                                                   <name>CULPI</name>
1198                                                   <taxonomy>
1199                                                     <id provider="uniprot">7175</id>
1200                                                     <code>CULPI</code>
1201                                                     <scientific_name>Culex pipiens</scientific_name>
1202                                                     <common_name>House mosquito</common_name>
1203                                                     <rank>species</rank>
1204                                                     <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/3/35/Culex_pipiens_2007-1.jpg/628px-Culex_pipiens_2007-1.jpg</uri>
1205                                                   </taxonomy>
1206                                                 </clade>
1207                                               </clade>
1208                                               <clade>
1209                                                 <taxonomy>
1210                                                   <id provider="uniprot">32341</id>
1211                                                   <scientific_name>Sophophora</scientific_name>
1212                                                   <rank>subgenus</rank>
1213                                                 </taxonomy>
1214                                                 <clade>
1215                                                   <name>DROME</name>
1216                                                   <taxonomy>
1217                                                     <id provider="uniprot">7227</id>
1218                                                     <code>DROME</code>
1219                                                     <scientific_name>Drosophila melanogaster</scientific_name>
1220                                                     <common_name>Fruit fly</common_name>
1221                                                     <rank>species</rank>
1222                                                   </taxonomy>
1223                                                 </clade>
1224                                                 <clade>
1225                                                   <name>DROPS</name>
1226                                                   <taxonomy>
1227                                                     <id provider="uniprot">46245</id>
1228                                                     <code>DROPS</code>
1229                                                     <scientific_name>Drosophila pseudoobscura pseudoobscura</scientific_name>
1230                                                     <common_name>Fruit fly</common_name>
1231                                                     <rank>subspecies</rank>
1232                                                   </taxonomy>
1233                                                 </clade>
1234                                               </clade>
1235                                             </clade>
1236                                             <clade>
1237                                               <name>BOMMO</name>
1238                                               <taxonomy>
1239                                                 <id provider="uniprot">7091</id>
1240                                                 <code>BOMMO</code>
1241                                                 <scientific_name>Bombyx mori</scientific_name>
1242                                                 <common_name>Silk moth</common_name>
1243                                                 <rank>species</rank>
1244                                               </taxonomy>
1245                                             </clade>
1246                                           </clade>
1247                                           <clade>
1248                                             <taxonomy>
1249                                               <id provider="uniprot">7400</id>
1250                                               <scientific_name>Apocrita</scientific_name>
1251                                               <common_name>wasps, ants and bees</common_name>
1252                                             </taxonomy>
1253                                             <clade>
1254                                               <name>APIME</name>
1255                                               <taxonomy>
1256                                                 <id provider="uniprot">7460</id>
1257                                                 <code>APIME</code>
1258                                                 <scientific_name>Apis mellifera</scientific_name>
1259                                                 <common_name>Honeybee</common_name>
1260                                                 <rank>species</rank>
1261                                               </taxonomy>
1262                                             </clade>
1263                                             <clade>
1264                                               <name>NASVI</name>
1265                                               <taxonomy>
1266                                                 <id provider="uniprot">7425</id>
1267                                                 <code>NASVI</code>
1268                                                 <scientific_name>Nasonia vitripennis</scientific_name>
1269                                                 <common_name>Parasitic wasp</common_name>
1270                                                 <rank>species</rank>
1271                                               </taxonomy>
1272                                             </clade>
1273                                           </clade>
1274                                         </clade>
1275                                         <clade>
1276                                           <name>TRICA</name>
1277                                           <taxonomy>
1278                                             <id provider="uniprot">7070</id>
1279                                             <code>TRICA</code>
1280                                             <scientific_name>Tribolium castaneum</scientific_name>
1281                                             <common_name>Red flour beetle</common_name>
1282                                             <rank>species</rank>
1283                                           </taxonomy>
1284                                         </clade>
1285                                       </clade>
1286                                       <clade>
1287                                         <taxonomy>
1288                                           <id provider="uniprot">7524</id>
1289                                           <scientific_name>Hemiptera</scientific_name>
1290                                           <rank>order</rank>
1291                                         </taxonomy>
1292                                         <clade>
1293                                           <name>ACYPI</name>
1294                                           <taxonomy>
1295                                             <id provider="uniprot">7029</id>
1296                                             <code>ACYPI</code>
1297                                             <scientific_name>Acyrthosiphon pisum</scientific_name>
1298                                             <common_name>Pea aphid</common_name>
1299                                             <rank>species</rank>
1300                                           </taxonomy>
1301                                         </clade>
1302                                         <clade>
1303                                           <name>RHOPR</name>
1304                                           <taxonomy>
1305                                             <id provider="uniprot">13249</id>
1306                                             <code>RHOPR</code>
1307                                             <scientific_name>Rhodnius prolixus</scientific_name>
1308                                             <common_name>Triatomid bug</common_name>
1309                                             <rank>species</rank>
1310                                             <uri>http://upload.wikimedia.org/wikipedia/commons/b/b9/Rhodnius_prolixus.jpg</uri>
1311                                           </taxonomy>
1312                                         </clade>
1313                                       </clade>
1314                                     </clade>
1315                                     <clade>
1316                                       <taxonomy>
1317                                         <id provider="uniprot">6658</id>
1318                                         <scientific_name>Branchiopoda</scientific_name>
1319                                         <rank>class</rank>
1320                                       </taxonomy>
1321                                       <clade>
1322                                         <name>DAPPU</name>
1323                                         <taxonomy>
1324                                           <id provider="uniprot">6669</id>
1325                                           <code>DAPPU</code>
1326                                           <scientific_name>Daphnia pulex</scientific_name>
1327                                           <common_name>Water flea</common_name>
1328                                           <rank>species</rank>
1329                                           <uri>http://www.microscopy-uk.org.uk/mag/imgjun99/daphni.jpg</uri>
1330                                         </taxonomy>
1331                                       </clade>
1332                                       <clade>
1333                                         <taxonomy>
1334                                           <id provider="uniprot">6661</id>
1335                                           <code>ARTSF</code>
1336                                           <scientific_name>Artemia franciscana</scientific_name>
1337                                           <common_name>Brine shrimp</common_name>
1338                                           <synonym>Artemia sanfranciscana</synonym>
1339                                           <rank>species</rank>
1340                                           <uri>http://www.alireza-asem.ir/images/Artemia.jpg</uri>
1341                                         </taxonomy>
1342                                       </clade>
1343                                     </clade>
1344                                   </clade>
1345                                   <clade>
1346                                     <taxonomy>
1347                                       <id provider="uniprot">61985</id>
1348                                       <scientific_name>Myriapoda</scientific_name>
1349                                       <rank>subphylum</rank>
1350                                     </taxonomy>
1351                                     <clade>
1352                                       <taxonomy>
1353                                         <id provider="uniprot">7540</id>
1354                                         <scientific_name>Chilopoda</scientific_name>
1355                                         <common_name>centipedes</common_name>
1356                                         <rank>class</rank>
1357                                       </taxonomy>
1358                                       <clade>
1359                                         <taxonomy>
1360                                           <id provider="uniprot">126957</id>
1361                                           <scientific_name>Strigamia maritima</scientific_name>
1362                                           <rank>species</rank>
1363                                           <uri>http://images.marinespecies.org/resized/22703_strigamia-maritima-male-loch-linnhe-scotland.jpg</uri>
1364                                         </taxonomy>
1365                                       </clade>
1366                                       <clade>
1367                                         <taxonomy>
1368                                           <id provider="uniprot">29022</id>
1369                                           <code>SCUCO</code>
1370                                           <scientific_name>Scutigera coleoptrata</scientific_name>
1371                                           <common_name>House centipede</common_name>
1372                                           <rank>species</rank>
1373                                           <uri>http://upload.wikimedia.org/wikipedia/commons/1/14/Scutigera_coleoptrata.JPG</uri>
1374                                         </taxonomy>
1375                                       </clade>
1376                                     </clade>
1377                                     <clade>
1378                                       <taxonomy>
1379                                         <id provider="uniprot">7553</id>
1380                                         <scientific_name>Diplopoda</scientific_name>
1381                                         <common_name>millipedes</common_name>
1382                                         <rank>class</rank>
1383                                       </taxonomy>
1384                                       <clade>
1385                                         <taxonomy>
1386                                           <id provider="uniprot">118561</id>
1387                                           <scientific_name>Helminthomorpha</scientific_name>
1388                                           <rank>subclass</rank>
1389                                         </taxonomy>
1390                                         <clade>
1391                                           <taxonomy>
1392                                             <id provider="uniprot">174156</id>
1393                                             <code>NARAN</code>
1394                                             <scientific_name>Narceus annularis</scientific_name>
1395                                             <common_name>Millipede</common_name>
1396                                             <rank>species</rank>
1397                                             <uri>http://i.pbase.com/g4/59/68959/2/59864073.narceus0705062large.jpg</uri>
1398                                           </taxonomy>
1399                                         </clade>
1400                                         <clade>
1401                                           <taxonomy>
1402                                             <id provider="uniprot">364406</id>
1403                                             <scientific_name>Antrokoreana gracilipes</scientific_name>
1404                                             <rank>species</rank>
1405                                             <uri>http://www.gwbaekdu.com/data/2d/%EA%B3%A1%EC%84%9D%EA%B5%B4_4(%EB%93%B1%EC%A4%84%EA%B5%B4%EB%85%B8%EB%9E%98%EA%B8%B0).jpg</uri>
1406                                           </taxonomy>
1407                                         </clade>
1408                                       </clade>
1409                                       <clade>
1410                                         <taxonomy>
1411                                           <id provider="uniprot">52428</id>
1412                                           <scientific_name>Polyxenus lagurus</scientific_name>
1413                                           <common_name>bristly millipede</common_name>
1414                                           <rank>species</rank>
1415                                           <uri>http://upload.wikimedia.org/wikipedia/commons/5/54/Polyxenus.lagurus.1.jpg</uri>
1416                                         </taxonomy>
1417                                       </clade>
1418                                     </clade>
1419                                   </clade>
1420                                 </clade>
1421                                 <clade>
1422                                   <name>IXOSC</name>
1423                                   <taxonomy>
1424                                     <id provider="uniprot">6945</id>
1425                                     <code>IXOSC</code>
1426                                     <scientific_name>Ixodes scapularis</scientific_name>
1427                                     <common_name>Black-legged tick</common_name>
1428                                     <synonym>Deer tick</synonym>
1429                                     <rank>species</rank>
1430                                     <uri>http://upload.wikimedia.org/wikipedia/commons/8/8c/Deertick.jpg</uri>
1431                                   </taxonomy>
1432                                 </clade>
1433                               </clade>
1434                               <clade>
1435                                 <taxonomy>
1436                                   <id provider="uniprot">119089</id>
1437                                   <scientific_name>Chromadorea</scientific_name>
1438                                   <rank>class</rank>
1439                                 </taxonomy>
1440                                 <reference doi="10.1038/32160">
1441                                 </reference>
1442                                 <clade>
1443                                   <name>nematode Clade V</name>
1444                                   <clade>
1445                                     <name>Caenorhabditis</name>
1446                                     <taxonomy>
1447                                       <id provider="uniprot">6237</id>
1448                                       <scientific_name>Caenorhabditis</scientific_name>
1449                                       <rank>genus</rank>
1450                                     </taxonomy>
1451                                     <clade>
1452                                       <name>CAEEL</name>
1453                                       <taxonomy>
1454                                         <id provider="uniprot">6239</id>
1455                                         <code>CAEEL</code>
1456                                         <scientific_name>Caenorhabditis elegans</scientific_name>
1457                                         <rank>species</rank>
1458                                       </taxonomy>
1459                                     </clade>
1460                                     <clade>
1461                                       <name>CAEBR</name>
1462                                       <taxonomy>
1463                                         <id provider="uniprot">6238</id>
1464                                         <code>CAEBR</code>
1465                                         <scientific_name>Caenorhabditis briggsae</scientific_name>
1466                                         <rank>species</rank>
1467                                       </taxonomy>
1468                                     </clade>
1469                                   </clade>
1470                                   <clade>
1471                                     <name>PRIPA</name>
1472                                     <taxonomy>
1473                                       <id provider="uniprot">54126</id>
1474                                       <code>PRIPA</code>
1475                                       <scientific_name>Pristionchus pacificus</scientific_name>
1476                                       <rank>species</rank>
1477                                     </taxonomy>
1478                                   </clade>
1479                                 </clade>
1480                                 <clade>
1481                                   <name>BRUMA</name>
1482                                   <taxonomy>
1483                                     <id provider="uniprot">6279</id>
1484                                     <code>BRUMA</code>
1485                                     <scientific_name>Brugia malayi</scientific_name>
1486                                     <common_name>Filarial nematode worm</common_name>
1487                                     <rank>species</rank>
1488                                   </taxonomy>
1489                                 </clade>
1490                               </clade>
1491                             </clade>
1492                             <clade>
1493                               <name>Lophotrochozoa</name>
1494                               <clade>
1495                                 <name>Annelida &amp; Mollusca</name>
1496                                 <clade>
1497                                   <taxonomy>
1498                                     <id provider="uniprot">6340</id>
1499                                     <scientific_name>Annelida</scientific_name>
1500                                     <rank>phylum</rank>
1501                                   </taxonomy>
1502                                   <clade>
1503                                     <name>CAP</name>
1504                                     <taxonomy>
1505                                       <id provider="uniprot">283909</id>
1506                                       <scientific_name>Capitella teleta</scientific_name>
1507                                       <rank>species</rank>
1508                                     </taxonomy>
1509                                   </clade>
1510                                   <clade>
1511                                     <name>HELRO</name>
1512                                     <taxonomy>
1513                                       <id provider="uniprot">6412</id>
1514                                       <code>HELRO</code>
1515                                       <scientific_name>Helobdella robusta</scientific_name>
1516                                       <common_name>Californian leech</common_name>
1517                                       <rank>species</rank>
1518                                     </taxonomy>
1519                                   </clade>
1520                                 </clade>
1521                                 <clade>
1522                                   <name>LOTGI</name>
1523                                   <taxonomy>
1524                                     <id provider="uniprot">225164</id>
1525                                     <code>LOTGI</code>
1526                                     <scientific_name>Lottia gigantea</scientific_name>
1527                                     <common_name>Owl limpet</common_name>
1528                                     <rank>species</rank>
1529                                   </taxonomy>
1530                                 </clade>
1531                               </clade>
1532                               <clade>
1533                                 <taxonomy>
1534                                   <id provider="uniprot">6157</id>
1535                                   <scientific_name>Platyhelminthes</scientific_name>
1536                                   <rank>phylum</rank>
1537                                 </taxonomy>
1538                                 <clade>
1539                                   <name>SCHMA</name>
1540                                   <taxonomy>
1541                                     <id provider="uniprot">6183</id>
1542                                     <code>SCHMA</code>
1543                                     <scientific_name>Schistosoma mansoni</scientific_name>
1544                                     <common_name>Blood fluke</common_name>
1545                                     <rank>species</rank>
1546                                   </taxonomy>
1547                                 </clade>
1548                                 <clade>
1549                                   <name>SCHMD</name>
1550                                   <taxonomy>
1551                                     <id provider="uniprot">79327</id>
1552                                     <code>SCHMD</code>
1553                                     <scientific_name>Schmidtea mediterranea</scientific_name>
1554                                     <common_name>Freshwater planarian flatworm</common_name>
1555                                     <rank>species</rank>
1556                                   </taxonomy>
1557                                 </clade>
1558                               </clade>
1559                             </clade>
1560                           </clade>
1561                         </clade>
1562                         <clade>
1563                           <name>Cnidaria</name>
1564                           <taxonomy>
1565                             <id provider="uniprot">6073</id>
1566                             <scientific_name>Cnidaria</scientific_name>
1567                             <rank>phylum</rank>
1568                           </taxonomy>
1569                           <clade>
1570                             <name>NEMVE</name>
1571                             <taxonomy>
1572                               <id provider="uniprot">45351</id>
1573                               <code>NEMVE</code>
1574                               <scientific_name>Nematostella vectensis</scientific_name>
1575                               <common_name>Starlet sea anemone</common_name>
1576                               <rank>species</rank>
1577                             </taxonomy>
1578                           </clade>
1579                           <clade>
1580                             <name>HYDMA</name>
1581                             <taxonomy>
1582                               <id provider="eol">9119928</id>
1583                               <code>HYDMA</code>
1584                               <scientific_name>Hydra magnipapillata</scientific_name>
1585                               <authority>Ito, 1947</authority>
1586                               <rank>species</rank>
1587                               <uri>http://www.nig.ac.jp/labs/OntoGen/magni.html</uri>
1588                             </taxonomy>
1589                           </clade>
1590                         </clade>
1591                       </clade>
1592                       <clade>
1593                         <name>TRIAD</name>
1594                         <taxonomy>
1595                           <id provider="uniprot">10228</id>
1596                           <code>TRIAD</code>
1597                           <scientific_name>Trichoplax adhaerens</scientific_name>
1598                           <synonym>Trichoplax reptans</synonym>
1599                           <rank>species</rank>
1600                         </taxonomy>
1601                         <reference doi="10.1073/pnas.0602076103">
1602                         </reference>
1603                       </clade>
1604                     </clade>
1605                     <clade>
1606                       <name>AMPQU</name>
1607                       <taxonomy>
1608                         <id provider="uniprot">400682</id>
1609                         <code>AMPQU</code>
1610                         <scientific_name>Amphimedon queenslandica</scientific_name>
1611                         <rank>species</rank>
1612                       </taxonomy>
1613                     </clade>
1614                   </clade>
1615                   <clade>
1616                     <taxonomy>
1617                       <id provider="uniprot">81524</id>
1618                       <scientific_name>Codonosigidae</scientific_name>
1619                       <rank>family</rank>
1620                     </taxonomy>
1621                     <clade>
1622                       <name>MONBE</name>
1623                       <taxonomy>
1624                         <id provider="uniprot">81824</id>
1625                         <code>MONBE</code>
1626                         <scientific_name>Monosiga brevicollis</scientific_name>
1627                         <common_name>Choanoflagellate</common_name>
1628                         <rank>species</rank>
1629                       </taxonomy>
1630                     </clade>
1631                     <clade>
1632                       <taxonomy>
1633                         <id provider="uniprot">946362</id>
1634                         <code>SALS5</code>
1635                         <scientific_name>Salpingoeca rosetta</scientific_name>
1636                         <synonym>Proterospongia sp. ATCC 50818</synonym>
1637                         <synonym>Salpingoeca sp. ATCC 50818</synonym>
1638                         <rank>species</rank>
1639                       </taxonomy>
1640                     </clade>
1641                   </clade>
1642                 </clade>
1643                 <clade>
1644                   <name>Ichthyophonida &amp; Filasterea</name>
1645                   <clade>
1646                     <taxonomy>
1647                       <id provider="uniprot">198625</id>
1648                       <scientific_name>Ichthyophonida</scientific_name>
1649                       <rank>order</rank>
1650                     </taxonomy>
1651                     <clade>
1652                       <taxonomy>
1653                         <id provider="uniprot">4881</id>
1654                         <code>AMOPA</code>
1655                         <scientific_name>Amoebidium parasiticum</scientific_name>
1656                         <rank>species</rank>
1657                         <uri>http://www.diark.org/img/species_pict/Amoebidium_parasiticum</uri>
1658                       </taxonomy>
1659                     </clade>
1660                     <clade>
1661                       <name>SPHARC</name>
1662                       <taxonomy>
1663                         <id provider="uniprot">72019</id>
1664                         <scientific_name>Sphaeroforma arctica</scientific_name>
1665                         <rank>species</rank>
1666                         <uri>http://www.sciencedirect.com/cache/MiamiImageURL/1-s2.0-S0168952507000236-gr2.jpg</uri>
1667                       </taxonomy>
1668                     </clade>
1669                   </clade>
1670                   <clade>
1671                     <taxonomy>
1672                       <scientific_name>Filasterea</scientific_name>
1673                     </taxonomy>
1674                     <reference doi="10.1371/journal.pone.0002098">
1675                     </reference>
1676                     <reference>
1677                     </reference>
1678                     <clade>
1679                       <name>MINVIB</name>
1680                       <taxonomy>
1681                         <id provider="uniprot">134558</id>
1682                         <scientific_name>Ministeria vibrans</scientific_name>
1683                         <rank>species</rank>
1684                       </taxonomy>
1685                     </clade>
1686                     <clade>
1687                       <name>CAPOWC</name>
1688                       <taxonomy>
1689                         <id provider="uniprot">192875</id>
1690                         <scientific_name>Capsaspora owczarzaki</scientific_name>
1691                         <rank>species</rank>
1692                       </taxonomy>
1693                     </clade>
1694                   </clade>
1695                 </clade>
1696               </clade>
1697               <clade>
1698                 <taxonomy>
1699                   <scientific_name>Holomycota</scientific_name>
1700                   <synonym>Nucletmycea</synonym>
1701                 </taxonomy>
1702                 <clade>
1703                   <taxonomy>
1704                     <id provider="uniprot">4751</id>
1705                     <scientific_name>Fungi</scientific_name>
1706                     <rank>kingdom</rank>
1707                   </taxonomy>
1708                   <clade>
1709                     <name>Dikarya &amp; Mucoromycotina &amp; Kickxellomycotina &amp; Blastocladiomycota &amp; Chytridiomycota</name>
1710                     <clade>
1711                       <name>Dikarya &amp; Mucoromycotina &amp; Kickxellomycotina &amp; Blastocladiomycota</name>
1712                       <clade>
1713                         <name>Dikarya &amp; Mucoromycotina &amp; Kickxellomycotina</name>
1714                         <clade>
1715                           <name>Dikarya &amp; Mucoromycotina</name>
1716                           <clade>
1717                             <taxonomy>
1718                               <id provider="uniprot">451864</id>
1719                               <scientific_name>Dikarya</scientific_name>
1720                               <rank>subkingdom</rank>
1721                             </taxonomy>
1722                             <reference doi="10.1038/nature05110">
1723                             </reference>
1724                             <reference>
1725                             </reference>
1726                             <clade>
1727                               <taxonomy>
1728                                 <id provider="uniprot">4890</id>
1729                                 <scientific_name>Ascomycota</scientific_name>
1730                                 <rank>phylum</rank>
1731                               </taxonomy>
1732                               <clade>
1733                                 <name>Pezizomycotina_Saccharomycetales</name>
1734                                 <clade>
1735                                   <taxonomy>
1736                                     <id provider="uniprot">147538</id>
1737                                     <scientific_name>Pezizomycotina</scientific_name>
1738                                     <rank>subphylum</rank>
1739                                   </taxonomy>
1740                                   <clade>
1741                                     <name>Sordariomycetes &amp; Leotiomycetes &amp; Dothideomycetes &amp; Eurotiales</name>
1742                                     <clade>
1743                                       <name>Sordariomycetes &amp; Leotiomycetes &amp; Dothideomycetes</name>
1744                                       <clade>
1745                                         <taxonomy>
1746                                           <id provider="uniprot">147541</id>
1747                                           <scientific_name>Dothideomycetes</scientific_name>
1748                                           <rank>class</rank>
1749                                         </taxonomy>
1750                                         <reference doi="10.3114/sim.2009.64.01">
1751                                           <desc>A class-wide phylogenetic assessment of Dothideomycetes</desc>
1752                                         </reference>
1753                                         <clade>
1754                                           <taxonomy>
1755                                             <id provider="uniprot">134362</id>
1756                                             <scientific_name>Capnodiales</scientific_name>
1757                                             <rank>order</rank>
1758                                           </taxonomy>
1759                                           <clade>
1760                                             <taxonomy>
1761                                               <id provider="uniprot">41254</id>
1762                                               <scientific_name>Mycosphaerella</scientific_name>
1763                                               <rank>genus</rank>
1764                                             </taxonomy>
1765                                             <clade>
1766                                               <name>MYCFI</name>
1767                                               <taxonomy>
1768                                                 <id provider="uniprot">83344</id>
1769                                                 <scientific_name>Mycosphaerella fijiensis</scientific_name>
1770                                                 <rank>species</rank>
1771                                               </taxonomy>
1772                                             </clade>
1773                                             <clade>
1774                                               <name>MYCGR</name>
1775                                               <taxonomy>
1776                                                 <id provider="uniprot">54734</id>
1777                                                 <code>MYCGR</code>
1778                                                 <scientific_name>Mycosphaerella graminicola</scientific_name>
1779                                                 <common_name>Speckled leaf blotch fungus</common_name>
1780                                                 <synonym>Septoria tritici</synonym>
1781                                                 <rank>species</rank>
1782                                               </taxonomy>
1783                                             </clade>
1784                                             <clade>
1785                                               <name>MYCPOP</name>
1786                                               <taxonomy>
1787                                                 <id provider="uniprot">85929</id>
1788                                                 <scientific_name>Mycosphaerella populorum</scientific_name>
1789                                                 <synonym>Septoria musiva</synonym>
1790                                                 <rank>species</rank>
1791                                               </taxonomy>
1792                                             </clade>
1793                                             <clade>
1794                                               <name>MYCPJ</name>
1795                                               <taxonomy>
1796                                                 <id provider="uniprot">64363</id>
1797                                                 <code>MYCPJ</code>
1798                                                 <scientific_name>Mycosphaerella pini</scientific_name>
1799                                                 <common_name>Red band needle blight disease fungus</common_name>
1800                                                 <synonym>Dothistroma septosporum</synonym>
1801                                                 <synonym>Dothistroma pini</synonym>
1802                                                 <rank>species</rank>
1803                                               </taxonomy>
1804                                             </clade>
1805                                           </clade>
1806                                           <clade>
1807                                             <taxonomy>
1808                                               <id provider="uniprot">430998</id>
1809                                               <code>BAUCOM</code>
1810                                               <scientific_name>Baudoinia compniacensis</scientific_name>
1811                                               <rank>species</rank>
1812                                               <uri>http://www.diark.org/img/species_pict/Baudoinia_compniacensis</uri>
1813                                             </taxonomy>
1814                                           </clade>
1815                                         </clade>
1816                                         <clade>
1817                                           <taxonomy>
1818                                             <id provider="uniprot">715340</id>
1819                                             <scientific_name>Pleosporineae</scientific_name>
1820                                             <rank>suborder</rank>
1821                                           </taxonomy>
1822                                           <clade>
1823                                             <taxonomy>
1824                                               <id provider="uniprot">28556</id>
1825                                               <scientific_name>Pleosporaceae</scientific_name>
1826                                               <rank>family</rank>
1827                                             </taxonomy>
1828                                             <clade>
1829                                               <name>Cochliobolus &amp; Setosphaeria</name>
1830                                               <clade>
1831                                                 <taxonomy>
1832                                                   <id provider="uniprot">5015</id>
1833                                                   <scientific_name>Cochliobolus</scientific_name>
1834                                                   <rank>genus</rank>
1835                                                 </taxonomy>
1836                                                 <clade>
1837                                                   <name>COCHE</name>
1838                                                   <taxonomy>
1839                                                     <id provider="uniprot">5016</id>
1840                                                     <code>COCHE</code>
1841                                                     <scientific_name>Cochliobolus heterostrophus</scientific_name>
1842                                                     <synonym>Drechslera maydis</synonym>
1843                                                     <rank>species</rank>
1844                                                   </taxonomy>
1845                                                 </clade>
1846                                                 <clade>
1847                                                   <taxonomy>
1848                                                     <id provider="uniprot">45130</id>
1849                                                     <code>COCSA</code>
1850                                                     <scientific_name>Cochliobolus sativus</scientific_name>
1851                                                     <synonym>Bipolaris sorokiniana</synonym>
1852                                                     <rank>species</rank>
1853                                                     <uri>http://www.plantmanagementnetwork.org/pub/php/diagnosticguide/2003/rootrot/image/mathre6sm.jpg</uri>
1854                                                   </taxonomy>
1855                                                 </clade>
1856                                               </clade>
1857                                               <clade>
1858                                                 <taxonomy>
1859                                                   <id provider="uniprot">93612</id>
1860                                                   <code>SETTU</code>
1861                                                   <scientific_name>Setosphaeria turcica</scientific_name>
1862                                                   <authority>(Luttr.) K.J. Leonard &amp; Suggs, (1974)</authority>
1863                                                   <common_name>Northern corn leaf blight disease fungus</common_name>
1864                                                   <synonym>Exserohilum turcicum</synonym>
1865                                                   <synonym>Helminthosporium turcicum</synonym>
1866                                                   <rank>species</rank>
1867                                                   <uri>http://www.pflanzenkrankheiten.ch/diseases/STU/figures_STU/HTU_Mais_Mik_7_k.jpg</uri>
1868                                                   <uri>http://www.pflanzenkrankheiten.ch/diseases/STU/figures_STU/Exserohilum_turcicum_001_k.jpg</uri>
1869                                                 </taxonomy>
1870                                               </clade>
1871                                             </clade>
1872                                             <clade>
1873                                               <name>PYRTR</name>
1874                                               <taxonomy>
1875                                                 <id provider="uniprot">426418</id>
1876                                                 <code>PYRTR</code>
1877                                                 <scientific_name>Pyrenophora tritici-repentis (strain Pt-1C-BFP)</scientific_name>
1878                                                 <common_name>Wheat tan spot fungus</common_name>
1879                                                 <synonym>Drechslera tritici-repentis</synonym>
1880                                               </taxonomy>
1881                                             </clade>
1882                                           </clade>
1883                                           <clade>
1884                                             <name>PHANO</name>
1885                                             <taxonomy>
1886                                               <id provider="uniprot">13684</id>
1887                                               <code>PHANO</code>
1888                                               <scientific_name>Phaeosphaeria nodorum</scientific_name>
1889                                               <common_name>Glume blotch fungus</common_name>
1890                                               <synonym>Septoria nodorum</synonym>
1891                                               <rank>species</rank>
1892                                             </taxonomy>
1893                                           </clade>
1894                                         </clade>
1895                                       </clade>
1896                                       <clade>
1897                                         <name>Sordariomycetes &amp; Leotiomycetes</name>
1898                                         <clade>
1899                                           <taxonomy>
1900                                             <id provider="uniprot">147550</id>
1901                                             <scientific_name>Sordariomycetes</scientific_name>
1902                                             <rank>class</rank>
1903                                           </taxonomy>
1904                                           <clade>
1905                                             <name>Magnaporthales &amp; Hypocreales</name>
1906                                             <clade>
1907                                               <taxonomy>
1908                                                 <id provider="uniprot">5125</id>
1909                                                 <scientific_name>Hypocreales</scientific_name>
1910                                                 <rank>order</rank>
1911                                               </taxonomy>
1912                                               <clade>
1913                                                 <name>TRIVE</name>
1914                                                 <taxonomy>
1915                                                   <id provider="uniprot">29875</id>
1916                                                   <code>TRIVE</code>
1917                                                   <scientific_name>Trichoderma virens</scientific_name>
1918                                                   <common_name>Gliocladium virens</common_name>
1919                                                   <synonym>Trichoderma virens</synonym>
1920                                                   <rank>species</rank>
1921                                                 </taxonomy>
1922                                               </clade>
1923                                               <clade>
1924                                                 <name>GIBZE</name>
1925                                                 <taxonomy>
1926                                                   <id provider="uniprot">5518</id>
1927                                                   <code>GIBZE</code>
1928                                                   <scientific_name>Gibberella zeae</scientific_name>
1929                                                   <common_name>Wheat head blight fungus</common_name>
1930                                                   <synonym>Fusarium graminearum</synonym>
1931                                                   <rank>species</rank>
1932                                                 </taxonomy>
1933                                               </clade>
1934                                               <clade>
1935                                                 <name>ACRALC</name>
1936                                                 <taxonomy>
1937                                                   <id provider="uniprot">398408</id>
1938                                                   <scientific_name>Acremonium alcalophilum</scientific_name>
1939                                                   <rank>species</rank>
1940                                                   <uri>http://genome.jgi-psf.org/public/Acral1_c3a/Acral1.jpg</uri>
1941                                                 </taxonomy>
1942                                               </clade>
1943                                             </clade>
1944                                             <clade>
1945                                               <name>MAGGR</name>
1946                                               <taxonomy>
1947                                                 <id provider="uniprot">148305</id>
1948                                                 <code>MAGGR</code>
1949                                                 <scientific_name>Magnaporthe grisea</scientific_name>
1950                                                 <common_name>Rice blast fungus</common_name>
1951                                                 <synonym>Pyricularia grisea</synonym>
1952                                                 <rank>species</rank>
1953                                               </taxonomy>
1954                                             </clade>
1955                                           </clade>
1956                                           <clade>
1957                                             <taxonomy>
1958                                               <id provider="uniprot">5139</id>
1959                                               <scientific_name>Sordariales</scientific_name>
1960                                               <rank>order</rank>
1961                                             </taxonomy>
1962                                             <clade>
1963                                               <taxonomy>
1964                                                 <id provider="uniprot">35718</id>
1965                                                 <scientific_name>Chaetomiaceae</scientific_name>
1966                                                 <rank>family</rank>
1967                                               </taxonomy>
1968                                               <clade>
1969                                                 <taxonomy>
1970                                                   <id provider="uniprot">35719</id>
1971                                                   <scientific_name>Thielavia</scientific_name>
1972                                                   <rank>genus</rank>
1973                                                 </taxonomy>
1974                                                 <clade>
1975                                                   <name>THITER</name>
1976                                                   <taxonomy>
1977                                                     <id provider="eol">193532</id>
1978                                                     <scientific_name>Thielavia terrestris</scientific_name>
1979                                                     <authority>Malloch &amp; Cain 1972</authority>
1980                                                     <synonym>Acremonium alabamense</synonym>
1981                                                     <rank>species</rank>
1982                                                     <uri>http://genome.jgi-psf.org/public/Thite2/Thite1.jpg</uri>
1983                                                   </taxonomy>
1984                                                 </clade>
1985                                                 <clade>
1986                                                   <name>MYCTHE</name>
1987                                                   <taxonomy>
1988                                                     <id provider="uniprot">573728</id>
1989                                                     <scientific_name>Myceliophthora thermophila</scientific_name>
1990                                                     <authority>(Apinis) Oorschot 1977</authority>
1991                                                     <synonym>Sporotrichum thermophilum</synonym>
1992                                                     <synonym>anamorph of Thielavia heterothallica</synonym>
1993                                                     <rank>species</rank>
1994                                                     <uri>http://genome.jgi-psf.org/public/Spoth2/Spoth0.jpg</uri>
1995                                                   </taxonomy>
1996                                                 </clade>
1997                                               </clade>
1998                                               <clade>
1999                                                 <name>CHAGB</name>
2000                                                 <taxonomy>
2001                                                   <id provider="eol">1029505</id>
2002                                                   <code>CHAGB</code>
2003                                                   <scientific_name>Chaetomium globosum</scientific_name>
2004                                                   <authority>Kunze 1817</authority>
2005                                                   <common_name>Soil fungus</common_name>
2006                                                   <rank>species</rank>
2007                                                 </taxonomy>
2008                                               </clade>
2009                                             </clade>
2010                                             <clade>
2011                                               <name>NEUCR</name>
2012                                               <taxonomy>
2013                                                 <id provider="uniprot">5141</id>
2014                                                 <code>NEUCR</code>
2015                                                 <scientific_name>Neurospora crassa</scientific_name>
2016                                                 <rank>species</rank>
2017                                               </taxonomy>
2018                                             </clade>
2019                                           </clade>
2020                                         </clade>
2021                                         <clade>
2022                                           <taxonomy>
2023                                             <id provider="uniprot">147548</id>
2024                                             <scientific_name>Leotiomycetes</scientific_name>
2025                                             <rank>class</rank>
2026                                           </taxonomy>
2027                                           <clade>
2028                                             <taxonomy>
2029                                               <id provider="uniprot">28983</id>
2030                                               <scientific_name>Sclerotiniaceae</scientific_name>
2031                                               <rank>family</rank>
2032                                             </taxonomy>
2033                                             <clade>
2034                                               <taxonomy>
2035                                                 <id provider="uniprot">40559</id>
2036                                                 <code>BOTFU</code>
2037                                                 <scientific_name>Botryotinia fuckeliana</scientific_name>
2038                                                 <common_name>Noble rot fungus</common_name>
2039                                                 <synonym>Botrytis cinerea</synonym>
2040                                                 <rank>species</rank>
2041                                               </taxonomy>
2042                                             </clade>
2043                                             <clade>
2044                                               <taxonomy>
2045                                                 <id provider="uniprot">5180</id>
2046                                                 <code>SCLSC</code>
2047                                                 <scientific_name>Sclerotinia sclerotiorum</scientific_name>
2048                                                 <common_name>White mold</common_name>
2049                                                 <synonym>Whetzelinia sclerotiorum</synonym>
2050                                                 <rank>species</rank>
2051                                               </taxonomy>
2052                                             </clade>
2053                                           </clade>
2054                                           <clade>
2055                                             <name>OIDMAI</name>
2056                                             <taxonomy>
2057                                               <id provider="uniprot">78148</id>
2058                                               <scientific_name>Oidiodendron maius</scientific_name>
2059                                               <rank>species</rank>
2060                                             </taxonomy>
2061                                           </clade>
2062                                         </clade>
2063                                       </clade>
2064                                     </clade>
2065                                     <clade>
2066                                       <taxonomy>
2067                                         <id provider="uniprot">28568</id>
2068                                         <scientific_name>Trichocomaceae</scientific_name>
2069                                         <rank>family</rank>
2070                                       </taxonomy>
2071                                       <clade>
2072                                         <name>Neosartorya_Emericella</name>
2073                                         <clade>
2074                                           <name>NEOFI</name>
2075                                           <taxonomy>
2076                                             <id provider="uniprot">331117</id>
2077                                             <code>NEOFI</code>
2078                                             <scientific_name>Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181)</scientific_name>
2079                                             <synonym>Aspergillus fischerianus</synonym>
2080                                           </taxonomy>
2081                                         </clade>
2082                                         <clade>
2083                                           <name>EMENI</name>
2084                                           <taxonomy>
2085                                             <id provider="eol">195546</id>
2086                                             <code>EMENI</code>
2087                                             <scientific_name>Emericella nidulans</scientific_name>
2088                                             <authority>Vuill. 1927</authority>
2089                                             <synonym>Aspergillus nidulans</synonym>
2090                                             <rank>species</rank>
2091                                           </taxonomy>
2092                                         </clade>
2093                                       </clade>
2094                                       <clade>
2095                                         <taxonomy>
2096                                           <id provider="uniprot">5052</id>
2097                                           <scientific_name>Aspergillus</scientific_name>
2098                                           <rank>genus</rank>
2099                                         </taxonomy>
2100                                         <clade>
2101                                           <name>ASPFL</name>
2102                                           <taxonomy>
2103                                             <id provider="uniprot">5059</id>
2104                                             <code>ASPFL</code>
2105                                             <scientific_name>Aspergillus flavus</scientific_name>
2106                                             <rank>species</rank>
2107                                           </taxonomy>
2108                                         </clade>
2109                                         <clade>
2110                                           <name>ASPNG</name>
2111                                           <taxonomy>
2112                                             <id provider="uniprot">5061</id>
2113                                             <code>ASPNG</code>
2114                                             <scientific_name>Aspergillus niger</scientific_name>
2115                                             <rank>species</rank>
2116                                           </taxonomy>
2117                                         </clade>
2118                                       </clade>
2119                                     </clade>
2120                                   </clade>
2121                                   <clade>
2122                                     <taxonomy>
2123                                       <id provider="uniprot">33183</id>
2124                                       <scientific_name>Onygenales</scientific_name>
2125                                       <rank>order</rank>
2126                                     </taxonomy>
2127                                     <clade>
2128                                       <name>COCIM</name>
2129                                       <taxonomy>
2130                                         <id provider="uniprot">5501</id>
2131                                         <code>COCIM</code>
2132                                         <scientific_name>Coccidioides immitis</scientific_name>
2133                                         <common_name>Valley fever fungus</common_name>
2134                                         <rank>species</rank>
2135                                       </taxonomy>
2136                                     </clade>
2137                                     <clade>
2138                                       <name>UNCRE</name>
2139                                       <taxonomy>
2140                                         <id provider="uniprot">336963</id>
2141                                         <code>UNCRE</code>
2142                                         <scientific_name>Uncinocarpus reesii (strain UAMH 1704)</scientific_name>
2143                                       </taxonomy>
2144                                     </clade>
2145                                   </clade>
2146                                 </clade>
2147                                 <clade>
2148                                   <taxonomy>
2149                                     <id provider="uniprot">4892</id>
2150                                     <scientific_name>Saccharomycetales</scientific_name>
2151                                     <common_name>budding yeasts</common_name>
2152                                     <rank>order</rank>
2153                                   </taxonomy>
2154                                   <clade>
2155                                     <name>Candida &amp; Debaryomyces &amp; Saccharomycetacea</name>
2156                                     <clade>
2157                                       <taxonomy>
2158                                         <id provider="uniprot">4893</id>
2159                                         <scientific_name>Saccharomycetaceae</scientific_name>
2160                                         <rank>family</rank>
2161                                       </taxonomy>
2162                                       <clade>
2163                                         <name>Saccharomyces_Pichia</name>
2164                                         <clade>
2165                                           <name>Saccharomyces</name>
2166                                           <clade>
2167                                             <name>YEAST</name>
2168                                             <taxonomy>
2169                                               <id provider="uniprot">4932</id>
2170                                               <code>YEAST</code>
2171                                               <scientific_name>Saccharomyces cerevisiae</scientific_name>
2172                                               <common_name>Baker&apos;s yeast</common_name>
2173                                               <rank>species</rank>
2174                                             </taxonomy>
2175                                           </clade>
2176                                           <clade>
2177                                             <name>SACCA</name>
2178                                             <taxonomy>
2179                                               <id provider="uniprot">27288</id>
2180                                               <code>SACCA</code>
2181                                               <scientific_name>Saccharomyces castellii</scientific_name>
2182                                               <common_name>Yeast</common_name>
2183                                               <synonym>Saccharomyces castellii</synonym>
2184                                               <rank>species</rank>
2185                                             </taxonomy>
2186                                           </clade>
2187                                         </clade>
2188                                         <clade>
2189                                           <name>PICAN</name>
2190                                           <taxonomy>
2191                                             <id provider="uniprot">4905</id>
2192                                             <code>PICAN</code>
2193                                             <scientific_name>Pichia angusta</scientific_name>
2194                                             <common_name>Yeast</common_name>
2195                                             <synonym>Hansenula polymorpha</synonym>
2196                                             <rank>species</rank>
2197                                           </taxonomy>
2198                                         </clade>
2199                                       </clade>
2200                                       <clade>
2201                                         <name>Kluyveromyces &amp; Ashbya</name>
2202                                         <clade>
2203                                           <name>ASHGO</name>
2204                                           <taxonomy>
2205                                             <id provider="uniprot">33169</id>
2206                                             <code>ASHGO</code>
2207                                             <scientific_name>Ashbya gossypii</scientific_name>
2208                                             <common_name>Yeast</common_name>
2209                                             <synonym>Eremothecium gossypii</synonym>
2210                                             <rank>species</rank>
2211                                           </taxonomy>
2212                                         </clade>
2213                                         <clade>
2214                                           <name>Kluyveromyces</name>
2215                                           <clade>
2216                                             <name>KLULA</name>
2217                                             <taxonomy>
2218                                               <id provider="uniprot">28985</id>
2219                                               <code>KLULA</code>
2220                                               <scientific_name>Kluyveromyces lactis</scientific_name>
2221                                               <common_name>Yeast</common_name>
2222                                               <synonym>Candida sphaerica</synonym>
2223                                               <rank>species</rank>
2224                                             </taxonomy>
2225                                           </clade>
2226                                           <clade>
2227                                             <name>KLUWA</name>
2228                                             <taxonomy>
2229                                               <id provider="uniprot">4914</id>
2230                                               <code>KLUWA</code>
2231                                               <scientific_name>Kluyveromyces waltii</scientific_name>
2232                                               <common_name>Yeast</common_name>
2233                                               <rank>species</rank>
2234                                             </taxonomy>
2235                                           </clade>
2236                                         </clade>
2237                                       </clade>
2238                                     </clade>
2239                                     <clade>
2240                                       <name>Candida &amp; Debaryomyces</name>
2241                                       <clade>
2242                                         <taxonomy>
2243                                           <id provider="uniprot">5475</id>
2244                                           <scientific_name>Candida</scientific_name>
2245                                           <rank>genus</rank>
2246                                         </taxonomy>
2247                                         <clade>
2248                                           <name>CANAL</name>
2249                                           <taxonomy>
2250                                             <id provider="uniprot">5476</id>
2251                                             <code>CANAL</code>
2252                                             <scientific_name>Candida albicans</scientific_name>
2253                                             <common_name>Yeast</common_name>
2254                                             <rank>species</rank>
2255                                           </taxonomy>
2256                                         </clade>
2257                                         <clade>
2258                                           <name>CANTR</name>
2259                                           <taxonomy>
2260                                             <id provider="uniprot">5482</id>
2261                                             <code>CANTR</code>
2262                                             <scientific_name>Candida tropicalis</scientific_name>
2263                                             <common_name>Yeast</common_name>
2264                                             <rank>species</rank>
2265                                           </taxonomy>
2266                                         </clade>
2267                                       </clade>
2268                                       <clade>
2269                                         <name>DEBHA</name>
2270                                         <taxonomy>
2271                                           <id provider="uniprot">4959</id>
2272                                           <code>DEBHA</code>
2273                                           <scientific_name>Debaryomyces hansenii</scientific_name>
2274                                           <common_name>Yeast</common_name>
2275                                           <synonym>Torulaspora hansenii</synonym>
2276                                           <rank>species</rank>
2277                                         </taxonomy>
2278                                       </clade>
2279                                     </clade>
2280                                   </clade>
2281                                   <clade>
2282                                     <name>YARLI</name>
2283                                     <taxonomy>
2284                                       <id provider="uniprot">4952</id>
2285                                       <code>YARLI</code>
2286                                       <scientific_name>Yarrowia lipolytica</scientific_name>
2287                                       <synonym>Candida lipolytica</synonym>
2288                                       <rank>species</rank>
2289                                     </taxonomy>
2290                                   </clade>
2291                                 </clade>
2292                               </clade>
2293                               <clade>
2294                                 <taxonomy>
2295                                   <id provider="uniprot">451866</id>
2296                                   <scientific_name>Taphrinomycotina</scientific_name>
2297                                   <rank>subphylum</rank>
2298                                 </taxonomy>
2299                                 <clade>
2300                                   <name>Pneumocystidomycetes &amp; Schizosaccharomycetes</name>
2301                                   <clade>
2302                                     <taxonomy>
2303                                       <id provider="uniprot">4895</id>
2304                                       <scientific_name>Schizosaccharomyces</scientific_name>
2305                                       <rank>genus</rank>
2306                                     </taxonomy>
2307                                     <clade>
2308                                       <name>SCHPO</name>
2309                                       <taxonomy>
2310                                         <id provider="uniprot">4896</id>
2311                                         <code>SCHPO</code>
2312                                         <scientific_name>Schizosaccharomyces pombe</scientific_name>
2313                                         <common_name>Fission yeast</common_name>
2314                                         <rank>species</rank>
2315                                       </taxonomy>
2316                                     </clade>
2317                                     <clade>
2318                                       <name>SCHJP</name>
2319                                       <taxonomy>
2320                                         <id provider="uniprot">4897</id>
2321                                         <code>SCHJP</code>
2322                                         <scientific_name>Schizosaccharomyces japonicus</scientific_name>
2323                                         <common_name>Fission yeast</common_name>
2324                                         <rank>species</rank>
2325                                       </taxonomy>
2326                                     </clade>
2327                                     <clade>
2328                                       <taxonomy>
2329                                         <id provider="uniprot">4899</id>
2330                                         <code>SCHOT</code>
2331                                         <scientific_name>Schizosaccharomyces octosporus</scientific_name>
2332                                         <common_name>Fission yeast</common_name>
2333                                         <rank>species</rank>
2334                                         <uri>http://www.dipbot.unict.it/sistematica/Immagini/12002.JPG</uri>
2335                                       </taxonomy>
2336                                     </clade>
2337                                   </clade>
2338                                   <clade>
2339                                     <name>PNECA</name>
2340                                     <taxonomy>
2341                                       <id provider="uniprot">4754</id>
2342                                       <code>PNECA</code>
2343                                       <scientific_name>Pneumocystis carinii</scientific_name>
2344                                       <rank>species</rank>
2345                                     </taxonomy>
2346                                   </clade>
2347                                 </clade>
2348                                 <clade>
2349                                   <name>SAICOM</name>
2350                                   <taxonomy>
2351                                     <id provider="uniprot">5606</id>
2352                                     <scientific_name>Saitoella complicata</scientific_name>
2353                                     <rank>species</rank>
2354                                   </taxonomy>
2355                                 </clade>
2356                               </clade>
2357                             </clade>
2358                             <clade>
2359                               <taxonomy>
2360                                 <id provider="uniprot">5204</id>
2361                                 <scientific_name>Basidiomycota</scientific_name>
2362                                 <rank>phylum</rank>
2363                               </taxonomy>
2364                               <clade>
2365                                 <name>Agaricomycotina &amp; Ustilaginomycotina &amp; Pucciniomycotina</name>
2366                                 <clade>
2367                                   <name>Agaricomycotina &amp; Ustilaginomycotina</name>
2368                                   <clade>
2369                                     <taxonomy>
2370                                       <id provider="uniprot">5302</id>
2371                                       <scientific_name>Agaricomycotina</scientific_name>
2372                                     </taxonomy>
2373                                     <clade>
2374                                       <taxonomy>
2375                                         <id provider="uniprot">155619</id>
2376                                         <scientific_name>Homobasidiomycetes</scientific_name>
2377                                         <rank>class</rank>
2378                                       </taxonomy>
2379                                       <reference doi="10.1098/rspb.2002.2123">
2380                                         <desc>Evolution of complex fruiting–body morphologies in homobasidiomycetes</desc>
2381                                       </reference>
2382                                       <clade>
2383                                         <name>Agaricomycetidae &amp; Gloeophyllum &amp; Aphyllophorales</name>
2384                                         <clade>
2385                                           <name>Agaricomycetidae &amp; Gloeophyllum</name>
2386                                           <clade>
2387                                             <taxonomy>
2388                                               <id provider="uniprot">452333</id>
2389                                               <scientific_name>Agaricomycetidae</scientific_name>
2390                                               <rank>subclass</rank>
2391                                             </taxonomy>
2392                                             <clade>
2393                                               <taxonomy>
2394                                                 <id provider="uniprot">5338</id>
2395                                                 <scientific_name>Agaricales</scientific_name>
2396                                                 <rank>order</rank>
2397                                               </taxonomy>
2398                                               <clade>
2399                                                 <name>Agaricus &amp; Coprinopsis &amp; Laccaria</name>
2400                                                 <clade>
2401                                                   <name>Agaricus &amp; Coprinopsis</name>
2402                                                   <clade>
2403                                                     <name>AGABB</name>
2404                                                     <taxonomy>
2405                                                       <id provider="uniprot">192524</id>
2406                                                       <scientific_name>Agaricus bisporus var. burnettii</scientific_name>
2407                                                     </taxonomy>
2408                                                   </clade>
2409                                                   <clade>
2410                                                     <name>COPCI</name>
2411                                                     <taxonomy>
2412                                                       <id provider="uniprot">5346</id>
2413                                                       <code>COPCI</code>
2414                                                       <scientific_name>Coprinopsis cinerea</scientific_name>
2415                                                       <common_name>Inky cap fungus</common_name>
2416                                                       <synonym>Hormographiella aspergillata</synonym>
2417                                                       <rank>species</rank>
2418                                                     </taxonomy>
2419                                                   </clade>
2420                                                 </clade>
2421                                                 <clade>
2422                                                   <name>LACBI</name>
2423                                                   <taxonomy>
2424                                                     <id provider="uniprot">29883</id>
2425                                                     <code>LACBI</code>
2426                                                     <scientific_name>Laccaria bicolor</scientific_name>
2427                                                     <common_name>Bicoloured deceiver</common_name>
2428                                                     <synonym>Laccaria laccata var. bicolor</synonym>
2429                                                     <rank>species</rank>
2430                                                   </taxonomy>
2431                                                 </clade>
2432                                               </clade>
2433                                               <clade>
2434                                                 <name>PLEOS</name>
2435                                                 <taxonomy>
2436                                                   <id provider="uniprot">5322</id>
2437                                                   <code>PLEOS</code>
2438                                                   <scientific_name>Pleurotus ostreatus</scientific_name>
2439                                                   <common_name>Oyster mushroom</common_name>
2440                                                   <synonym>White-rot fungus</synonym>
2441                                                   <rank>species</rank>
2442                                                 </taxonomy>
2443                                               </clade>
2444                                             </clade>
2445                                             <clade>
2446                                               <taxonomy>
2447                                                 <id provider="uniprot">227334</id>
2448                                                 <scientific_name>Coniophorineae</scientific_name>
2449                                                 <rank>suborder</rank>
2450                                               </taxonomy>
2451                                               <clade>
2452                                                 <name>SERLA</name>
2453                                                 <taxonomy>
2454                                                   <id provider="uniprot">85982</id>
2455                                                   <scientific_name>Serpula lacrymans</scientific_name>
2456                                                   <common_name>dry rot fungus</common_name>
2457                                                   <rank>species</rank>
2458                                                 </taxonomy>
2459                                               </clade>
2460                                               <clade>
2461                                                 <name>CONPUT</name>
2462                                                 <taxonomy>
2463                                                   <id provider="uniprot">80637</id>
2464                                                   <scientific_name>Coniophora puteana</scientific_name>
2465                                                   <authority>Schum. ex Fries</authority>
2466                                                   <common_name>cellar fungus</common_name>
2467                                                   <rank>species</rank>
2468                                                   <uri>http://genome.jgi-psf.org/public/Conpu1/P1240066_dp.jpg</uri>
2469                                                 </taxonomy>
2470                                               </clade>
2471                                             </clade>
2472                                           </clade>
2473                                           <clade>
2474                                             <name>GLOTR</name>
2475                                             <taxonomy>
2476                                               <id provider="uniprot">104355</id>
2477                                               <code>GLOTR</code>
2478                                               <scientific_name>Gloeophyllum trabeum</scientific_name>
2479                                               <common_name>Brown rot fungus</common_name>
2480                                               <rank>species</rank>
2481                                             </taxonomy>
2482                                           </clade>
2483                                         </clade>
2484                                         <clade>
2485                                           <taxonomy>
2486                                             <id provider="uniprot">5303</id>
2487                                             <scientific_name>Aphyllophorales</scientific_name>
2488                                             <authority>Gäum. (1926)</authority>
2489                                             <common_name>Shelf Fungi</common_name>
2490                                             <synonym>Polyporales</synonym>
2491                                             <rank>order</rank>
2492                                           </taxonomy>
2493                                           <clade>
2494                                             <taxonomy>
2495                                               <id provider="uniprot">83233</id>
2496                                               <scientific_name>Coriolaceae</scientific_name>
2497                                               <rank>family</rank>
2498                                             </taxonomy>
2499                                             <reference doi="10.1017/S1477200005001623">
2500                                               <desc>The phylogenetic distribution of resupinate forms across the major clades of mushroom-forming fungi (Homobasidiomycetes)</desc>
2501                                             </reference>
2502                                             <reference>
2503                                             </reference>
2504                                             <reference>
2505                                             </reference>
2506                                             <clade>
2507                                               <name>Postia &amp; Fomitopsis &amp; Wolfiporia &amp; Trametes</name>
2508                                               <clade>
2509                                                 <name>Antrodia clade</name>
2510                                                 <taxonomy>
2511                                                   <common_name>Antrodia clade</common_name>
2512                                                 </taxonomy>
2513                                                 <clade>
2514                                                   <name>POSPL</name>
2515                                                   <taxonomy>
2516                                                     <id provider="uniprot">104341</id>
2517                                                     <scientific_name>Postia placenta</scientific_name>
2518                                                     <rank>species</rank>
2519                                                     <uri>http://www.commanster.eu/commanster/Mushrooms/Polypore/SuPolypore/Postia.placenta.jpg</uri>
2520                                                   </taxonomy>
2521                                                 </clade>
2522                                                 <clade>
2523                                                   <name>FOMPIN</name>
2524                                                   <taxonomy>
2525                                                     <id provider="uniprot">40483</id>
2526                                                     <scientific_name>Fomitopsis pinicola</scientific_name>
2527                                                     <authority>P. Karst. 1881</authority>
2528                                                     <common_name>Red banded polypore</common_name>
2529                                                     <synonym>Fomes pinicola</synonym>
2530                                                     <rank>species</rank>
2531                                                     <uri>http://content6.eol.org/content/2009/06/07/01/48471_large.jpg</uri>
2532                                                   </taxonomy>
2533                                                 </clade>
2534                                               </clade>
2535                                               <clade>
2536                                                 <name>core polyporoid clade</name>
2537                                                 <taxonomy>
2538                                                   <common_name>core polyporoid clade</common_name>
2539                                                 </taxonomy>
2540                                                 <clade>
2541                                                   <name>WOLCOC</name>
2542                                                   <taxonomy>
2543                                                     <id provider="uniprot">81056</id>
2544                                                     <scientific_name>Wolfiporia cocos</scientific_name>
2545                                                     <rank>species</rank>
2546                                                     <uri>http://toolate.s7.coreserver.jp/kinoko/fungi/wolfiporia_cocos/w_cocos_002.jpg</uri>
2547                                                   </taxonomy>
2548                                                 </clade>
2549                                                 <clade>
2550                                                   <name>TRAVE</name>
2551                                                   <taxonomy>
2552                                                     <id provider="uniprot">5325</id>
2553                                                     <code>TRAVE</code>
2554                                                     <scientific_name>Trametes versicolor</scientific_name>
2555                                                     <authority>(L.) Lloyd 1921</authority>
2556                                                     <common_name>White-rot fungus</common_name>
2557                                                     <synonym>Coriolus versicolor</synonym>
2558                                                     <synonym>Bjerkandera versicolor</synonym>
2559                                                     <rank>species</rank>
2560                                                     <uri>http://www.mykoweb.com/CAF/photos/Trametes_versicolor(bab-1).jpg</uri>
2561                                                     <uri>http://www.mykoweb.com/CAF/photos/Trametes_versicolor(bab-2).jpg</uri>
2562                                                     <uri>http://www.mykoweb.com/CAF/photos/Trametes_versicolor(mgw-01).jpg</uri>
2563                                                     <uri>http://genome.jgi-psf.org/public/Trave1/Trametes_versicolor.JPG</uri>
2564                                                   </taxonomy>
2565                                                 </clade>
2566                                               </clade>
2567                                             </clade>
2568                                             <clade>
2569                                               <name>CERSU</name>
2570                                               <taxonomy>
2571                                                 <id provider="uniprot">42742</id>
2572                                                 <code>CERSU</code>
2573                                                 <scientific_name>Ceriporiopsis subvermispora</scientific_name>
2574                                                 <rank>species</rank>
2575                                               </taxonomy>
2576                                             </clade>
2577                                           </clade>
2578                                           <clade>
2579                                             <name>DICSQU</name>
2580                                             <taxonomy>
2581                                               <id provider="uniprot">114155</id>
2582                                               <scientific_name>Dichomitus squalens</scientific_name>
2583                                               <authority>(P. Karst.) D. A. Reid 1965</authority>
2584                                               <common_name>Red rot</common_name>
2585                                               <synonym>Polyporus anceps</synonym>
2586                                               <rank>species</rank>
2587                                               <uri>http://www.fs.fed.us/r3/resources/health/field-guide/images/large/sds-f199-large.jpg</uri>
2588                                             </taxonomy>
2589                                           </clade>
2590                                         </clade>
2591                                       </clade>
2592                                       <clade>
2593                                         <name>HETAN</name>
2594                                         <taxonomy>
2595                                           <id provider="uniprot">13563</id>
2596                                           <code>HETAN</code>
2597                                           <scientific_name>Heterobasidion annosum</scientific_name>
2598                                           <common_name>Root rot fungus</common_name>
2599                                           <rank>species</rank>
2600                                         </taxonomy>
2601                                       </clade>
2602                                     </clade>
2603                                     <clade>
2604                                       <taxonomy>
2605                                         <id provider="uniprot">5215</id>
2606                                         <scientific_name>Tremellaceae</scientific_name>
2607                                         <rank>family</rank>
2608                                       </taxonomy>
2609                                       <clade>
2610                                         <name>CRYNE</name>
2611                                         <taxonomy>
2612                                           <id provider="uniprot">5207</id>
2613                                           <code>CRYNE</code>
2614                                           <scientific_name>Cryptococcus neoformans</scientific_name>
2615                                           <synonym>Filobasidiella neoformans</synonym>
2616                                           <rank>species</rank>
2617                                         </taxonomy>
2618                                       </clade>
2619                                       <clade>
2620                                         <name>TREME</name>
2621                                         <taxonomy>
2622                                           <id provider="eol">1029985</id>
2623                                           <code>TREME</code>
2624                                           <scientific_name>Tremella mesenterica</scientific_name>
2625                                           <authority>Pers. 1800</authority>
2626                                           <common_name>Jelly fungus</common_name>
2627                                           <synonym>Yellow Brain</synonym>
2628                                           <synonym>Tremella lutescens</synonym>
2629                                           <rank>species</rank>
2630                                         </taxonomy>
2631                                       </clade>
2632                                     </clade>
2633                                   </clade>
2634                                   <clade>
2635                                     <taxonomy>
2636                                       <id provider="uniprot">452284</id>
2637                                       <scientific_name>Ustilaginomycotina</scientific_name>
2638                                       <rank>subphylum</rank>
2639                                     </taxonomy>
2640                                     <clade>
2641                                       <name>USTMA</name>
2642                                       <taxonomy>
2643                                         <id provider="uniprot">5270</id>
2644                                         <code>USTMA</code>
2645                                         <scientific_name>Ustilago maydis</scientific_name>
2646                                         <common_name>Smut fungus</common_name>
2647                                         <rank>species</rank>
2648                                       </taxonomy>
2649                                     </clade>
2650                                     <clade>
2651                                       <taxonomy>
2652                                         <id provider="uniprot">425265</id>
2653                                         <code>MALGO</code>
2654                                         <scientific_name>Malassezia globosa (strain ATCC MYA-4612 / CBS 7966)</scientific_name>
2655                                         <common_name>Dandruff-associated fungus</common_name>
2656                                       </taxonomy>
2657                                     </clade>
2658                                   </clade>
2659                                 </clade>
2660                                 <clade>
2661                                   <taxonomy>
2662                                     <id provider="uniprot">29000</id>
2663                                     <scientific_name>Pucciniomycotina</scientific_name>
2664                                     <rank>subphylum</rank>
2665                                   </taxonomy>
2666                                   <clade>
2667                                     <taxonomy>
2668                                       <id provider="uniprot">5258</id>
2669                                       <scientific_name>Pucciniales</scientific_name>
2670                                       <common_name>rusts</common_name>
2671                                       <rank>order</rank>
2672                                     </taxonomy>
2673                                     <clade>
2674                                       <name>PUCGR</name>
2675                                       <taxonomy>
2676                                         <id provider="eol">1029947</id>
2677                                         <code>PUCGR</code>
2678                                         <scientific_name>Puccinia graminis</scientific_name>
2679                                         <authority>Pers. 1794</authority>
2680                                         <common_name>Black stem rust fungus</common_name>
2681                                         <synonym>Wheat rust</synonym>
2682                                         <rank>species</rank>
2683                                       </taxonomy>
2684                                     </clade>
2685                                     <clade>
2686                                       <name>MELLP</name>
2687                                       <taxonomy>
2688                                         <id provider="eol">156696</id>
2689                                         <code>MELLP</code>
2690                                         <scientific_name>Melampsora laricis-populina</scientific_name>
2691                                         <authority>Kleb. 1902</authority>
2692                                         <synonym>Melampsora larici-populina</synonym>
2693                                         <synonym>Melampsora laricipopulina</synonym>
2694                                         <rank>species</rank>
2695                                       </taxonomy>
2696                                     </clade>
2697                                   </clade>
2698                                   <clade>
2699                                     <taxonomy>
2700                                       <id provider="uniprot">89013</id>
2701                                       <scientific_name>mitosporic Sporidiobolales</scientific_name>
2702                                     </taxonomy>
2703                                     <clade>
2704                                       <name>SPORO</name>
2705                                       <taxonomy>
2706                                         <id provider="eol">1013696</id>
2707                                         <scientific_name>Sporobolomyces roseus</scientific_name>
2708                                         <authority>Kluyver &amp; C. B. Niel 1924</authority>
2709                                         <rank>species</rank>
2710                                       </taxonomy>
2711                                     </clade>
2712                                     <clade>
2713                                       <name>RHOGR</name>
2714                                       <taxonomy>
2715                                         <id provider="uniprot">29898</id>
2716                                         <code>RHOGR</code>
2717                                         <scientific_name>Rhodotorula graminis</scientific_name>
2718                                         <common_name>Yeast</common_name>
2719                                         <rank>species</rank>
2720                                       </taxonomy>
2721                                     </clade>
2722                                   </clade>
2723                                 </clade>
2724                               </clade>
2725                               <clade>
2726                                 <name>WALSE</name>
2727                                 <taxonomy>
2728                                   <id provider="uniprot">148960</id>
2729                                   <code>WALSE</code>
2730                                   <scientific_name>Wallemia sebi</scientific_name>
2731                                   <rank>species</rank>
2732                                 </taxonomy>
2733                               </clade>
2734                             </clade>
2735                           </clade>
2736                           <clade>
2737                             <taxonomy>
2738                               <id provider="uniprot">451507</id>
2739                               <scientific_name>Mucoromycotina</scientific_name>
2740                               <rank>subphylum</rank>
2741                             </taxonomy>
2742                             <clade>
2743                               <taxonomy>
2744                                 <id provider="uniprot">34489</id>
2745                                 <scientific_name>Mucoraceae</scientific_name>
2746                                 <rank>family</rank>
2747                               </taxonomy>
2748                               <clade>
2749                                 <name>MUCCI</name>
2750                                 <taxonomy>
2751                                   <id provider="uniprot">36080</id>
2752                                   <code>MUCCI</code>
2753                                   <scientific_name>Mucor circinelloides</scientific_name>
2754                                   <synonym>Mucor griseo-roseus</synonym>
2755                                   <rank>species</rank>
2756                                 </taxonomy>
2757                               </clade>
2758                               <clade>
2759                                 <name>PHYBL</name>
2760                                 <taxonomy>
2761                                   <id provider="uniprot">4837</id>
2762                                   <code>PHYBL</code>
2763                                   <scientific_name>Phycomyces blakesleeanus</scientific_name>
2764                                   <rank>species</rank>
2765                                 </taxonomy>
2766                               </clade>
2767                               <clade>
2768                                 <name>RHIOR</name>
2769                                 <taxonomy>
2770                                   <id provider="uniprot">64495</id>
2771                                   <code>RHIOR</code>
2772                                   <scientific_name>Rhizopus oryzae</scientific_name>
2773                                   <synonym>Rhizopus delemar</synonym>
2774                                   <rank>species</rank>
2775                                 </taxonomy>
2776                               </clade>
2777                             </clade>
2778                             <clade>
2779                               <name>MORVER</name>
2780                               <taxonomy>
2781                                 <id provider="uniprot">78898</id>
2782                                 <scientific_name>Mortierella verticillata</scientific_name>
2783                                 <rank>species</rank>
2784                                 <uri>http://www.diark.org/img/species_pict/Mortierella_verticillata</uri>
2785                               </taxonomy>
2786                             </clade>
2787                           </clade>
2788                         </clade>
2789                         <clade>
2790                           <name>COEREV</name>
2791                           <taxonomy>
2792                             <id provider="uniprot">61392</id>
2793                             <scientific_name>Coemansia reversa</scientific_name>
2794                             <rank>species</rank>
2795                           </taxonomy>
2796                         </clade>
2797                       </clade>
2798                       <clade>
2799                         <taxonomy>
2800                           <id provider="uniprot">28583</id>
2801                           <code>ALLMA</code>
2802                           <scientific_name>Allomyces macrogynus</scientific_name>
2803                           <rank>species</rank>
2804                         </taxonomy>
2805                       </clade>
2806                     </clade>
2807                     <clade>
2808                       <taxonomy>
2809                         <id provider="uniprot">451435</id>
2810                         <scientific_name>Chytridiomycetes</scientific_name>
2811                         <rank>class</rank>
2812                       </taxonomy>
2813                       <clade>
2814                         <name>BATDE</name>
2815                         <taxonomy>
2816                           <id provider="uniprot">109871</id>
2817                           <code>BATDE</code>
2818                           <scientific_name>Batrachochytrium dendrobatidis</scientific_name>
2819                           <common_name>Frog chytrid fungus</common_name>
2820                           <rank>species</rank>
2821                         </taxonomy>
2822                       </clade>
2823                       <clade>
2824                         <name>SPIPN</name>
2825                         <taxonomy>
2826                           <id provider="uniprot">109760</id>
2827                           <code>SPIPN</code>
2828                           <scientific_name>Spizellomyces punctatus</scientific_name>
2829                           <rank>species</rank>
2830                         </taxonomy>
2831                       </clade>
2832                     </clade>
2833                   </clade>
2834                   <clade>
2835                     <name>ENCCU</name>
2836                     <taxonomy>
2837                       <id provider="uniprot">6035</id>
2838                       <code>ENCCU</code>
2839                       <scientific_name>Encephalitozoon cuniculi</scientific_name>
2840                       <common_name>Microsporidian parasite</common_name>
2841                       <rank>species</rank>
2842                     </taxonomy>
2843                   </clade>
2844                 </clade>
2845                 <clade>
2846                   <name>Fonticula &amp; Nucleariidae</name>
2847                   <reference doi="10.1093/molbev/msp185">
2848                   </reference>
2849                   <clade>
2850                     <name>FONALB</name>
2851                     <taxonomy>
2852                       <id provider="uniprot">691883</id>
2853                       <scientific_name>Fonticula alba</scientific_name>
2854                       <synonym>Fonticula alba Worley, Raper &amp; Hohl. 1979</synonym>
2855                       <rank>species</rank>
2856                     </taxonomy>
2857                   </clade>
2858                   <clade>
2859                     <name>NUCSIM</name>
2860                     <taxonomy>
2861                       <id provider="uniprot">154970</id>
2862                       <scientific_name>Nuclearia simplex</scientific_name>
2863                       <rank>species</rank>
2864                     </taxonomy>
2865                   </clade>
2866                 </clade>
2867               </clade>
2868             </clade>
2869             <clade>
2870               <name>THETRA</name>
2871               <taxonomy>
2872                 <id provider="uniprot">529818</id>
2873                 <scientific_name>Thecamonas trahens</scientific_name>
2874                 <rank>species</rank>
2875               </taxonomy>
2876             </clade>
2877           </clade>
2878           <clade>
2879             <name>Amoebozoa</name>
2880             <taxonomy>
2881               <id provider="uniprot">554915</id>
2882               <scientific_name>Amoebozoa</scientific_name>
2883             </taxonomy>
2884             <clade>
2885               <name>Dictyostelium</name>
2886               <taxonomy>
2887                 <id provider="uniprot">5782</id>
2888                 <scientific_name>Dictyostelium</scientific_name>
2889                 <rank>genus</rank>
2890               </taxonomy>
2891               <clade>
2892                 <name>DICDI</name>
2893                 <taxonomy>
2894                   <id provider="uniprot">44689</id>
2895                   <code>DICDI</code>
2896                   <scientific_name>Dictyostelium discoideum</scientific_name>
2897                   <common_name>Slime mold</common_name>
2898                   <rank>species</rank>
2899                 </taxonomy>
2900               </clade>
2901               <clade>
2902                 <name>DICPU</name>
2903                 <taxonomy>
2904                   <id provider="uniprot">5786</id>
2905                   <code>DICPU</code>
2906                   <scientific_name>Dictyostelium purpureum</scientific_name>
2907                   <common_name>Slime mold</common_name>
2908                   <rank>species</rank>
2909                 </taxonomy>
2910               </clade>
2911             </clade>
2912             <clade>
2913               <name>ENTHI</name>
2914               <taxonomy>
2915                 <id provider="uniprot">5759</id>
2916                 <code>ENTHI</code>
2917                 <scientific_name>Entamoeba histolytica</scientific_name>
2918                 <rank>species</rank>
2919               </taxonomy>
2920             </clade>
2921           </clade>
2922         </clade>
2923         <clade>
2924           <name>Bikonta</name>
2925           <reference doi="10.1099/ijs.0.63216-0">
2926           </reference>
2927           <clade>
2928             <name>Corticata</name>
2929             <clade>
2930               <name>Archaeplastida</name>
2931               <clade>
2932                 <taxonomy>
2933                   <id provider="uniprot">33090</id>
2934                   <scientific_name>Viridiplantae</scientific_name>
2935                   <common_name>green plants</common_name>
2936                   <rank>kingdom</rank>
2937                 </taxonomy>
2938                 <clade>
2939                   <taxonomy>
2940                     <id provider="uniprot">3193</id>
2941                     <scientific_name>Embryophyta</scientific_name>
2942                   </taxonomy>
2943                   <clade>
2944                     <taxonomy>
2945                       <id provider="uniprot">58023</id>
2946                       <scientific_name>Tracheophyta</scientific_name>
2947                     </taxonomy>
2948                     <clade>
2949                       <taxonomy>
2950                         <id provider="uniprot">3398</id>
2951                         <scientific_name>Magnoliophyta</scientific_name>
2952                         <common_name>flowering plants</common_name>
2953                         <synonym>Angiospermae</synonym>
2954                       </taxonomy>
2955                       <clade>
2956                         <taxonomy>
2957                           <id provider="uniprot">71240</id>
2958                           <scientific_name>eudicotyledons</scientific_name>
2959                         </taxonomy>
2960                         <clade>
2961                           <taxonomy>
2962                             <id provider="uniprot">91827</id>
2963                             <scientific_name>core eudicotyledons</scientific_name>
2964                           </taxonomy>
2965                           <clade>
2966                             <taxonomy>
2967                               <id provider="uniprot">71275</id>
2968                               <scientific_name>rosids</scientific_name>
2969                               <synonym>Rosidae</synonym>
2970                               <rank>subclass</rank>
2971                             </taxonomy>
2972                             <clade>
2973                               <name>fabids &amp; malvids</name>
2974                               <clade>
2975                                 <taxonomy>
2976                                   <id provider="uniprot">91835</id>
2977                                   <scientific_name>fabids</scientific_name>
2978                                   <synonym>eurosids I</synonym>
2979                                 </taxonomy>
2980                                 <clade>
2981                                   <taxonomy>
2982                                     <id provider="uniprot">3646</id>
2983                                     <scientific_name>Malpighiales</scientific_name>
2984                                     <rank>order</rank>
2985                                   </taxonomy>
2986                                   <clade>
2987                                     <taxonomy>
2988                                       <id provider="uniprot">3977</id>
2989                                       <scientific_name>Euphorbiaceae</scientific_name>
2990                                       <common_name>spurge family</common_name>
2991                                       <rank>family</rank>
2992                                     </taxonomy>
2993                                     <clade>
2994                                       <name>MANES</name>
2995                                       <taxonomy>
2996                                         <id provider="uniprot">3983</id>
2997                                         <code>MANES</code>
2998                                         <scientific_name>Manihot esculenta</scientific_name>
2999                                         <common_name>Tapioca</common_name>
3000                                         <synonym>Jatropha manihot</synonym>
3001                                         <rank>species</rank>
3002                                         <uri>http://upload.wikimedia.org/wikipedia/commons/9/99/Iwata_kenichi_cassava.jpg</uri>
3003                                       </taxonomy>
3004                                     </clade>
3005                                     <clade>
3006                                       <name>RICCO</name>
3007                                       <taxonomy>
3008                                         <id provider="uniprot">3988</id>
3009                                         <code>RICCO</code>
3010                                         <scientific_name>Ricinus communis</scientific_name>
3011                                         <common_name>Castor bean</common_name>
3012                                         <synonym>Ricinus sanguineus</synonym>
3013                                         <rank>species</rank>
3014                                         <uri>http://nmorganics.net/wp-content/uploads/2011/09/castor.jpg</uri>
3015                                       </taxonomy>
3016                                     </clade>
3017                                   </clade>
3018                                   <clade>
3019                                     <name>POPTR</name>
3020                                     <taxonomy>
3021                                       <id provider="uniprot">3694</id>
3022                                       <code>POPTR</code>
3023                                       <scientific_name>Populus trichocarpa</scientific_name>
3024                                       <common_name>Western balsam poplar</common_name>
3025                                       <synonym>Populus balsamifera subsp. trichocarpa</synonym>
3026                                       <rank>species</rank>
3027                                     </taxonomy>
3028                                   </clade>
3029                                 </clade>
3030                                 <clade>
3031                                   <name>Rosales &amp; Cucurbitales &amp; Fabales</name>
3032                                   <clade>
3033                                     <taxonomy>
3034                                       <id provider="uniprot">3814</id>
3035                                       <scientific_name>Papilionoideae</scientific_name>
3036                                       <synonym>Faboideae</synonym>
3037                                       <rank>subfamily</rank>
3038                                     </taxonomy>
3039                                     <clade>
3040                                       <name>SOYBN</name>
3041                                       <taxonomy>
3042                                         <id provider="uniprot">3847</id>
3043                                         <code>SOYBN</code>
3044                                         <scientific_name>Glycine max</scientific_name>
3045                                         <authority>cv. Wye</authority>
3046                                         <common_name>Soybean</common_name>
3047                                         <synonym>Glycine hispida</synonym>
3048                                         <rank>species</rank>
3049                                       </taxonomy>
3050                                     </clade>
3051                                     <clade>
3052                                       <name>MEDTR</name>
3053                                       <taxonomy>
3054                                         <id provider="uniprot">3880</id>
3055                                         <code>MEDTR</code>
3056                                         <scientific_name>Medicago truncatula</scientific_name>
3057                                         <common_name>Barrel medic</common_name>
3058                                         <synonym>Medicago tribuloides</synonym>
3059                                         <rank>species</rank>
3060                                         <uri>http://crdp.ac-besancon.fr/flore/FABACEAE/photos/medicago_truncatula_30.jpg</uri>
3061                                       </taxonomy>
3062                                     </clade>
3063                                   </clade>
3064                                   <clade>
3065                                     <name>Rosales &amp; Cucurbitales</name>
3066                                     <clade>
3067                                       <name>CUCSA</name>
3068                                       <taxonomy>
3069                                         <id provider="uniprot">3659</id>
3070                                         <code>CUCSA</code>
3071                                         <scientific_name>Cucumis sativus</scientific_name>
3072                                         <common_name>Cucumber</common_name>
3073                                         <rank>species</rank>
3074                                       </taxonomy>
3075                                     </clade>
3076                                     <clade>
3077                                       <taxonomy>
3078                                         <id provider="uniprot">3745</id>
3079                                         <scientific_name>Rosaceae</scientific_name>
3080                                         <common_name>rose family</common_name>
3081                                         <rank>family</rank>
3082                                       </taxonomy>
3083                                       <clade>
3084                                         <name>PRUPE</name>
3085                                         <taxonomy>
3086                                           <id provider="uniprot">3760</id>
3087                                           <code>PRUPE</code>
3088                                           <scientific_name>Prunus persica</scientific_name>
3089                                           <common_name>Peach</common_name>
3090                                           <synonym>Persica vulgaris</synonym>
3091                                           <synonym>Amygdalus persica</synonym>
3092                                           <rank>species</rank>
3093                                           <uri>http://www.mezhenskyjv.narod.ru/foto_sortov/dokaz.jpg</uri>
3094                                         </taxonomy>
3095                                       </clade>
3096                                       <clade>
3097                                         <name>FRAVE</name>
3098                                         <taxonomy>
3099                                           <id provider="uniprot">57918</id>
3100                                           <code>FRAVE</code>
3101                                           <scientific_name>Fragaria vesca</scientific_name>
3102                                           <common_name>Woodland strawberry</common_name>
3103                                           <synonym>Fragaria vesca L.</synonym>
3104                                           <synonym>European strawberry</synonym>
3105                                           <synonym>alpine strawberry</synonym>
3106                                           <rank>species</rank>
3107                                           <uri>http://www.boga.ruhr-uni-bochum.de/html/Fragaria.vesca.ja6.jpg</uri>
3108                                           <uri>http://caliban.mpiz-koeln.mpg.de/thome/band3/tafel_092_small.jpg</uri>
3109                                         </taxonomy>
3110                                       </clade>
3111                                     </clade>
3112                                   </clade>
3113                                 </clade>
3114                               </clade>
3115                               <clade>
3116                                 <taxonomy>
3117                                   <id provider="uniprot">91836</id>
3118                                   <scientific_name>malvids</scientific_name>
3119                                   <synonym>eurosids II</synonym>
3120                                 </taxonomy>
3121                                 <clade>
3122                                   <name>Brassicales &amp; Sapindales</name>
3123                                   <clade>
3124                                     <taxonomy>
3125                                       <id provider="uniprot">3699</id>
3126                                       <scientific_name>Brassicales</scientific_name>
3127                                       <synonym>Capparales</synonym>
3128                                       <rank>order</rank>
3129                                     </taxonomy>
3130                                     <clade>
3131                                       <taxonomy>
3132                                         <id provider="uniprot">3700</id>
3133                                         <scientific_name>Brassicaceae</scientific_name>
3134                                         <rank>family</rank>
3135                                       </taxonomy>
3136                                       <clade>
3137                                         <taxonomy>
3138                                           <id provider="uniprot">3701</id>
3139                                           <scientific_name>Arabidopsis</scientific_name>
3140                                           <rank>genus</rank>
3141                                         </taxonomy>
3142                                         <clade>
3143                                           <name>ARATH</name>
3144                                           <taxonomy>
3145                                             <id provider="uniprot">3702</id>
3146                                             <code>ARATH</code>
3147                                             <scientific_name>Arabidopsis thaliana</scientific_name>
3148                                             <common_name>Mouse-ear cress</common_name>
3149                                             <rank>species</rank>
3150                                           </taxonomy>
3151                                         </clade>
3152                                         <clade>
3153                                           <name>ARALY</name>
3154                                           <taxonomy>
3155                                             <id provider="uniprot">59689</id>
3156                                             <code>ARALY</code>
3157                                             <scientific_name>Arabidopsis lyrata</scientific_name>
3158                                             <common_name>Lyre-leaved rock-cress</common_name>
3159                                             <rank>species</rank>
3160                                           </taxonomy>
3161                                         </clade>
3162                                       </clade>
3163                                       <clade>
3164                                         <taxonomy>
3165                                           <id provider="uniprot">98038</id>
3166                                           <code>THEHA</code>
3167                                           <scientific_name>Thellungiella halophila</scientific_name>
3168                                           <common_name>Salt cress</common_name>
3169                                           <rank>species</rank>
3170                                           <uri>http://thellungiella.org/images/thellun1.jpg</uri>
3171                                         </taxonomy>
3172                                       </clade>
3173                                     </clade>
3174                                     <clade>
3175                                       <name>CARPA</name>
3176                                       <taxonomy>
3177                                         <id provider="uniprot">3649</id>
3178                                         <code>CARPA</code>
3179                                         <scientific_name>Carica papaya</scientific_name>
3180                                         <common_name>Papaya</common_name>
3181                                         <rank>species</rank>
3182                                         <uri>http://www.biopix.com/photos/jko-carica-papaya-00412.jpg</uri>
3183                                         <uri>http://www.texasriviera.com/greenthumbs/papaya10.jpg</uri>
3184                                       </taxonomy>
3185                                     </clade>
3186                                   </clade>
3187                                   <clade>
3188                                     <taxonomy>
3189                                       <id provider="uniprot">2706</id>
3190                                       <scientific_name>Citrus</scientific_name>
3191                                       <rank>genus</rank>
3192                                     </taxonomy>
3193                                     <clade>
3194                                       <name>CITSI</name>
3195                                       <taxonomy>
3196                                         <id provider="uniprot">2711</id>
3197                                         <code>CITSI</code>
3198                                         <scientific_name>Citrus sinensis</scientific_name>
3199                                         <common_name>Sweet orange</common_name>
3200                                         <synonym>Citrus x sinensis</synonym>
3201                                         <rank>species</rank>
3202                                         <uri>http://www.west-crete.com/flowers/photos/citrus_sinensis-1.jpg</uri>
3203                                       </taxonomy>
3204                                     </clade>
3205                                     <clade>
3206                                       <name>CITCLE</name>
3207                                       <taxonomy>
3208                                         <id provider="uniprot">85681</id>
3209                                         <scientific_name>Citrus clementina</scientific_name>
3210                                         <synonym>Citrus clementina hort. ex Tanaka</synonym>
3211                                         <rank>species</rank>
3212                                         <uri>http://palmen-bolschetz.de/images/citrus%20clementine.jpg</uri>
3213                                       </taxonomy>
3214                                     </clade>
3215                                   </clade>
3216                                 </clade>
3217                                 <clade>
3218                                   <name>EUCGR</name>
3219                                   <taxonomy>
3220                                     <id provider="uniprot">71139</id>
3221                                     <code>EUCGR</code>
3222                                     <scientific_name>Eucalyptus grandis</scientific_name>
3223                                     <common_name>Flooded gum</common_name>
3224                                     <rank>species</rank>
3225                                     <uri>http://www.calflora.net/losangelesarboretum/images/eucalyptus_grandis.jpg</uri>
3226                                     <uri>http://www.anbg.gov.au/projects/eucalypts/images/eucalyptus-grandis-bark.jpg</uri>
3227                                   </taxonomy>
3228                                 </clade>
3229                               </clade>
3230                             </clade>
3231                             <clade>
3232                               <name>VITVI</name>
3233                               <taxonomy>
3234                                 <id provider="eol">582304</id>
3235                                 <code>VITVI</code>
3236                                 <scientific_name>Vitis vinifera</scientific_name>
3237                                 <common_name>Grape</common_name>
3238                                 <rank>species</rank>
3239                               </taxonomy>
3240                             </clade>
3241                           </clade>
3242                           <clade>
3243                             <name>MIMGU</name>
3244                             <taxonomy>
3245                               <id provider="uniprot">4155</id>
3246                               <code>MIMGU</code>
3247                               <scientific_name>Mimulus guttatus</scientific_name>
3248                               <common_name>Yellow monkey flower</common_name>
3249                               <synonym>Yellow monkey flower</synonym>
3250                               <rank>species</rank>
3251                             </taxonomy>
3252                           </clade>
3253                         </clade>
3254                         <clade>
3255                           <name>AQUCA</name>
3256                           <taxonomy>
3257                             <id provider="uniprot">218851</id>
3258                             <code>AQUCA</code>
3259                             <scientific_name>Aquilegia caerulea</scientific_name>
3260                             <authority>E.James</authority>
3261                             <common_name>Rocky mountain columbine</common_name>
3262                             <synonym>Aquilegia coerulea</synonym>
3263                             <rank>species</rank>
3264                             <uri>http://content9.eol.org/content/2010/01/01/03/15137_large.jpg</uri>
3265                           </taxonomy>
3266                         </clade>
3267                       </clade>
3268                       <clade>
3269                         <taxonomy>
3270                           <id provider="uniprot">4479</id>
3271                           <scientific_name>Poaceae</scientific_name>
3272                           <common_name>grass family</common_name>
3273                           <synonym>Gramineae</synonym>
3274                           <rank>family</rank>
3275                         </taxonomy>
3276                         <clade>
3277                           <taxonomy>
3278                             <id provider="uniprot">359160</id>
3279                             <scientific_name>BEP clade</scientific_name>
3280                           </taxonomy>
3281                           <clade>
3282                             <taxonomy>
3283                               <id provider="uniprot">4527</id>
3284                               <scientific_name>Oryza</scientific_name>
3285                               <rank>genus</rank>
3286                             </taxonomy>
3287                             <clade>
3288                               <name>ORYSJ</name>
3289                               <taxonomy>
3290                                 <id provider="uniprot">39947</id>
3291                                 <code>ORYSJ</code>
3292                                 <scientific_name>Oryza sativa subsp. japonica</scientific_name>
3293                                 <common_name>Rice</common_name>
3294                               </taxonomy>
3295                             </clade>
3296                             <clade>
3297                               <name>ORYSA</name>
3298                               <taxonomy>
3299                                 <id provider="uniprot">4530</id>
3300                                 <code>ORYSA</code>
3301                                 <scientific_name>Oryza sativa</scientific_name>
3302                                 <common_name>Rice</common_name>
3303                                 <rank>species</rank>
3304                               </taxonomy>
3305                             </clade>
3306                           </clade>
3307                           <clade>
3308                             <name>BRADI</name>
3309                             <taxonomy>
3310                               <id provider="uniprot">15368</id>
3311                               <code>BRADI</code>
3312                               <scientific_name>Brachypodium distachyon</scientific_name>
3313                               <common_name>Purple false brome</common_name>
3314                               <synonym>Trachynia distachya</synonym>
3315                               <rank>species</rank>
3316                               <uri>http://content5.eol.org/content/2011/01/15/20/16311_large.jpg</uri>
3317                             </taxonomy>
3318                           </clade>
3319                         </clade>
3320                         <clade>
3321                           <taxonomy>
3322                             <id provider="uniprot">147369</id>
3323                             <scientific_name>Panicoideae</scientific_name>
3324                             <authority>Link, 1827</authority>
3325                             <synonym>Centothecoideae</synonym>
3326                             <rank>subfamily</rank>
3327                           </taxonomy>
3328                           <clade>
3329                             <taxonomy>
3330                               <id provider="uniprot">147429</id>
3331                               <scientific_name>Andropogoneae</scientific_name>
3332                               <authority>Dumort., 1824</authority>
3333                               <rank>tribe</rank>
3334                             </taxonomy>
3335                             <clade>
3336                               <name>SORBI</name>
3337                               <taxonomy>
3338                                 <id provider="uniprot">4558</id>
3339                                 <code>SORBI</code>
3340                                 <scientific_name>Sorghum bicolor</scientific_name>
3341                                 <common_name>Sorghum</common_name>
3342                                 <synonym>Sorghum vulgare</synonym>
3343                                 <rank>species</rank>
3344                               </taxonomy>
3345                             </clade>
3346                             <clade>
3347                               <name>MAIZE</name>
3348                               <taxonomy>
3349                                 <id provider="uniprot">4577</id>
3350                                 <code>MAIZE</code>
3351                                 <scientific_name>Zea mays</scientific_name>
3352                                 <common_name>Maize</common_name>
3353                                 <rank>species</rank>
3354                               </taxonomy>
3355                             </clade>
3356                           </clade>
3357                           <clade>
3358                             <name>SETIT</name>
3359                             <taxonomy>
3360                               <id provider="uniprot">4555</id>
3361                               <code>SETIT</code>
3362                               <scientific_name>Setaria italica</scientific_name>
3363                               <common_name>Foxtail millet</common_name>
3364                               <synonym>Panicum italicum</synonym>
3365                               <rank>species</rank>
3366                               <uri>http://en.academic.ru/pictures/enwiki/83/Setaria_italica0.jpg</uri>
3367                             </taxonomy>
3368                           </clade>
3369                         </clade>
3370                       </clade>
3371                     </clade>
3372                     <clade>
3373                       <name>SELMO</name>
3374                       <taxonomy>
3375                         <id provider="uniprot">34167</id>
3376                         <code>SELMO</code>
3377                         <scientific_name>Selaginella mollis</scientific_name>
3378                         <common_name>Moss</common_name>
3379                         <rank>species</rank>
3380                       </taxonomy>
3381                     </clade>
3382                   </clade>
3383                   <clade>
3384                     <name>PHYPA</name>
3385                     <taxonomy>
3386                       <id provider="uniprot">145481</id>
3387                       <code>PHYPA</code>
3388                       <scientific_name>Physcomitrella patens subsp. patens</scientific_name>
3389                       <common_name>Moss</common_name>
3390                       <rank>subspecies</rank>
3391                     </taxonomy>
3392                   </clade>
3393                 </clade>
3394                 <clade>
3395                   <taxonomy>
3396                     <id provider="uniprot">3041</id>
3397                     <scientific_name>Chlorophyta</scientific_name>
3398                     <rank>phylum</rank>
3399                   </taxonomy>
3400                   <clade>
3401                     <taxonomy>
3402                       <id provider="uniprot">13792</id>
3403                       <scientific_name>Mamiellales</scientific_name>
3404                       <rank>order</rank>
3405                     </taxonomy>
3406                     <clade>
3407                       <taxonomy>
3408                         <id provider="uniprot">70447</id>
3409                         <scientific_name>Ostreococcus</scientific_name>
3410                         <rank>genus</rank>
3411                       </taxonomy>
3412                       <clade>
3413                         <name>OSTLU</name>
3414                         <taxonomy>
3415                           <id provider="uniprot">436017</id>
3416                           <code>OSTLU</code>
3417                           <scientific_name>Ostreococcus lucimarinus (strain CCE9901)</scientific_name>
3418                         </taxonomy>
3419                       </clade>
3420                       <clade>
3421                         <name>OSTTA</name>
3422                         <taxonomy>
3423                           <id provider="uniprot">70448</id>
3424                           <code>OSTTA</code>
3425                           <scientific_name>Ostreococcus tauri</scientific_name>
3426                           <rank>species</rank>
3427                         </taxonomy>
3428                       </clade>
3429                       <clade>
3430                         <name>OSTRC</name>
3431                         <taxonomy>
3432                           <id provider="uniprot">385169</id>
3433                           <scientific_name>Ostreococcus sp. RCC809</scientific_name>
3434                           <rank>species</rank>
3435                         </taxonomy>
3436                       </clade>
3437                     </clade>
3438                     <clade>
3439                       <taxonomy>
3440                         <id provider="uniprot">38832</id>
3441                         <scientific_name>Micromonas</scientific_name>
3442                         <rank>genus</rank>
3443                       </taxonomy>
3444                       <clade>
3445                         <name>MICPC</name>
3446                         <taxonomy>
3447                           <id provider="uniprot">564608</id>
3448                           <code>MICPC</code>
3449                           <scientific_name>Micromonas pusilla (strain CCMP1545)</scientific_name>
3450                           <common_name>Picoplanktonic green alga</common_name>
3451                         </taxonomy>
3452                       </clade>
3453                       <clade>
3454                         <name>MICSR</name>
3455                         <taxonomy>
3456                           <id provider="uniprot">296587</id>
3457                           <code>MICSR</code>
3458                           <scientific_name>Micromonas sp. (strain RCC299 / NOUM17)</scientific_name>
3459                           <common_name>Picoplanktonic green alga</common_name>
3460                           <synonym>Micromonas sp. RCC299</synonym>
3461                           <rank>species</rank>
3462                         </taxonomy>
3463                       </clade>
3464                     </clade>
3465                   </clade>
3466                   <clade>
3467                     <name>Trebouxiophyceae_Chlorophyceae</name>
3468                     <clade>
3469                       <taxonomy>
3470                         <id provider="uniprot">3042</id>
3471                         <scientific_name>Chlamydomonadales</scientific_name>
3472                         <rank>order</rank>
3473                       </taxonomy>
3474                       <clade>
3475                         <name>CHLRE</name>
3476                         <taxonomy>
3477                           <id provider="uniprot">3055</id>
3478                           <code>CHLRE</code>
3479                           <scientific_name>Chlamydomonas reinhardtii</scientific_name>
3480                           <synonym>Chlamydomonas smithii</synonym>
3481                           <rank>species</rank>
3482                         </taxonomy>
3483                       </clade>
3484                       <clade>
3485                         <name>VOLCA</name>
3486                         <taxonomy>
3487                           <id provider="uniprot">3067</id>
3488                           <code>VOLCA</code>
3489                           <scientific_name>Volvox carteri</scientific_name>
3490                           <common_name>Green alga</common_name>
3491                           <rank>species</rank>
3492                         </taxonomy>
3493                       </clade>
3494                     </clade>
3495                     <clade>
3496                       <taxonomy>
3497                         <id provider="uniprot">75966</id>
3498                         <scientific_name>Trebouxiophyceae</scientific_name>
3499                         <rank>class</rank>
3500                       </taxonomy>
3501                       <clade>
3502                         <name>CHLSP</name>
3503                         <taxonomy>
3504                           <id provider="uniprot">554065</id>
3505                           <scientific_name>Chlorella variabilis</scientific_name>
3506                           <synonym>Chlorella sp. NC64A</synonym>
3507                           <rank>species</rank>
3508                         </taxonomy>
3509                       </clade>
3510                       <clade>
3511                         <name>CHLVUL</name>
3512                         <taxonomy>
3513                           <id provider="uniprot">574566</id>
3514                           <scientific_name>Coccomyxa sp. C-169</scientific_name>
3515                           <synonym>Chlorella vulgaris C-169</synonym>
3516                           <rank>species</rank>
3517                         </taxonomy>
3518                       </clade>
3519                     </clade>
3520                   </clade>
3521                 </clade>
3522               </clade>
3523               <clade>
3524                 <name>CYAME</name>
3525                 <taxonomy>
3526                   <id provider="uniprot">45157</id>
3527                   <code>CYAME</code>
3528                   <scientific_name>Cyanidioschyzon merolae</scientific_name>
3529                   <common_name>Red alga</common_name>
3530                   <rank>species</rank>
3531                   <uri>http://merolae.biol.s.u-tokyo.ac.jp/</uri>
3532                 </taxonomy>
3533               </clade>
3534             </clade>
3535             <clade>
3536               <name>Chromalveolate</name>
3537               <reference doi="10.1073/pnas.0712248105">
3538               </reference>
3539               <clade>
3540                 <name>Heterokonta_Alveolata</name>
3541                 <clade>
3542                   <name>Alveolata</name>
3543                   <taxonomy>
3544                     <id provider="uniprot">33630</id>
3545                     <scientific_name>Alveolata</scientific_name>
3546                   </taxonomy>
3547                   <clade>
3548                     <taxonomy>
3549                       <id provider="uniprot">5794</id>
3550                       <scientific_name>Apicomplexa</scientific_name>
3551                       <rank>phylum</rank>
3552                     </taxonomy>
3553                     <clade>
3554                       <taxonomy>
3555                         <id provider="uniprot">422676</id>
3556                         <scientific_name>Aconoidasida</scientific_name>
3557                         <rank>class</rank>
3558                       </taxonomy>
3559                       <clade>
3560                         <taxonomy>
3561                           <id provider="uniprot">5820</id>
3562                           <scientific_name>Plasmodium</scientific_name>
3563                           <rank>genus</rank>
3564                         </taxonomy>
3565                         <clade>
3566                           <name>PLAFA</name>
3567                           <taxonomy>
3568                             <id provider="uniprot">5833</id>
3569                             <code>PLAFA</code>
3570                             <scientific_name>Plasmodium falciparum</scientific_name>
3571                             <rank>species</rank>
3572                           </taxonomy>
3573                         </clade>
3574                         <clade>
3575                           <name>PLAYO</name>
3576                           <taxonomy>
3577                             <id provider="uniprot">73239</id>
3578                             <code>PLAYO</code>
3579                             <scientific_name>Plasmodium yoelii yoelii</scientific_name>
3580                             <rank>subspecies</rank>
3581                           </taxonomy>
3582                         </clade>
3583                         <clade>
3584                           <name>PLACH</name>
3585                           <taxonomy>
3586                             <id provider="uniprot">5825</id>
3587                             <code>PLACH</code>
3588                             <scientific_name>Plasmodium chabaudi</scientific_name>
3589                             <rank>species</rank>
3590                           </taxonomy>
3591                         </clade>
3592                       </clade>
3593                       <clade>
3594                         <name>Theileria</name>
3595                         <taxonomy>
3596                           <id provider="uniprot">5873</id>
3597                           <scientific_name>Theileria</scientific_name>
3598                           <rank>genus</rank>
3599                         </taxonomy>
3600                         <clade>
3601                           <name>THEPA</name>
3602                           <taxonomy>
3603                             <id provider="uniprot">5875</id>
3604                             <code>THEPA</code>
3605                             <scientific_name>Theileria parva</scientific_name>
3606                             <rank>species</rank>
3607                           </taxonomy>
3608                         </clade>
3609                         <clade>
3610                           <name>THEAN</name>
3611                           <taxonomy>
3612                             <id provider="uniprot">5874</id>
3613                             <code>THEAN</code>
3614                             <scientific_name>Theileria annulata</scientific_name>
3615                             <rank>species</rank>
3616                           </taxonomy>
3617                         </clade>
3618                       </clade>
3619                     </clade>
3620                     <clade>
3621                       <taxonomy>
3622                         <id provider="uniprot">423054</id>
3623                         <scientific_name>Eimeriorina</scientific_name>
3624                         <rank>suborder</rank>
3625                       </taxonomy>
3626                       <clade>
3627                         <taxonomy>
3628                           <id provider="uniprot">5806</id>
3629                           <scientific_name>Cryptosporidium</scientific_name>
3630                           <rank>genus</rank>
3631                         </taxonomy>
3632                         <clade>
3633                           <name>CRYHO</name>
3634                           <taxonomy>
3635                             <id provider="uniprot">237895</id>
3636                             <code>CRYHO</code>
3637                             <scientific_name>Cryptosporidium hominis</scientific_name>
3638                             <rank>species</rank>
3639                           </taxonomy>
3640                         </clade>
3641                         <clade>
3642                           <name>CRYPV</name>
3643                           <taxonomy>
3644                             <id provider="uniprot">5807</id>
3645                             <code>CRYPV</code>
3646                             <scientific_name>Cryptosporidium parvum</scientific_name>
3647                             <rank>species</rank>
3648                           </taxonomy>
3649                         </clade>
3650                       </clade>
3651                       <clade>
3652                         <name>Eimeria &amp; Toxoplasma</name>
3653                         <distribution>
3654                           <point geodetic_datum="?" alt_unit="?">
3655                             <lat>0</lat>
3656                             <long>0</long>
3657                             <alt>0</alt>
3658                           </point>
3659                         </distribution>
3660                         <reference doi="10.1093/molbev/msn213">
3661                           <desc>The Apicomplexan Whole-Genome Phylogeny: An Analysis of Incongruence among Gene Trees</desc>
3662                         </reference>
3663                         <reference>
3664                         </reference>
3665                         <clade>
3666                           <name>TOXGO</name>
3667                           <taxonomy>
3668                             <id provider="uniprot">5811</id>
3669                             <code>TOXGO</code>
3670                             <scientific_name>Toxoplasma gondii</scientific_name>
3671                             <rank>species</rank>
3672                           </taxonomy>
3673                         </clade>
3674                         <clade>
3675                           <taxonomy>
3676                             <id provider="uniprot">5802</id>
3677                             <code>EIMTE</code>
3678                             <scientific_name>Eimeria tenella</scientific_name>
3679                             <common_name>Coccidian parasite</common_name>
3680                             <rank>species</rank>
3681                             <uri>http://www.k-state.edu/parasitology/625tutorials/FIGtenella.jpg</uri>
3682                           </taxonomy>
3683                         </clade>
3684                       </clade>
3685                     </clade>
3686                   </clade>
3687                   <clade>
3688                     <taxonomy>
3689                       <id provider="uniprot">6020</id>
3690                       <scientific_name>Oligohymenophorea</scientific_name>
3691                       <rank>class</rank>
3692                     </taxonomy>
3693                     <clade>
3694                       <name>TETTH</name>
3695                       <taxonomy>
3696                         <id provider="uniprot">5911</id>
3697                         <code>TETTH</code>
3698                         <scientific_name>Tetrahymena thermophila</scientific_name>
3699                         <rank>species</rank>
3700                       </taxonomy>
3701                     </clade>
3702                     <clade>
3703                       <name>PARTE</name>
3704                       <taxonomy>
3705                         <id provider="uniprot">5888</id>
3706                         <code>PARTE</code>
3707                         <scientific_name>Paramecium tetraurelia</scientific_name>
3708                         <rank>species</rank>
3709                       </taxonomy>
3710                     </clade>
3711                   </clade>
3712                 </clade>
3713                 <clade>
3714                   <name>Heterokonta</name>
3715                   <taxonomy>
3716                     <id provider="uniprot">33634</id>
3717                     <scientific_name>stramenopiles</scientific_name>
3718                     <synonym>Chromophyta</synonym>
3719                   </taxonomy>
3720                   <clade>
3721                     <name>Pelagophyceae_Bacillariophyta</name>
3722                     <clade>
3723                       <taxonomy>
3724                         <id provider="uniprot">2836</id>
3725                         <scientific_name>Bacillariophyta</scientific_name>
3726                         <common_name>diatoms</common_name>
3727                         <rank>phylum</rank>
3728                       </taxonomy>
3729                       <clade>
3730                         <taxonomy>
3731                           <id provider="uniprot">33850</id>
3732                           <scientific_name>Bacillariophycidae</scientific_name>
3733                         </taxonomy>
3734                         <clade>
3735                           <name>PHATR</name>
3736                           <taxonomy>
3737                             <id provider="eol">912693</id>
3738                             <code>PHATR</code>
3739                             <scientific_name>Phaeodactylum tricornutum</scientific_name>
3740                             <authority>Bohlin</authority>
3741                             <rank>species</rank>
3742                           </taxonomy>
3743                         </clade>
3744                         <clade>
3745                           <name>FRACY</name>
3746                           <taxonomy>
3747                             <id provider="eol">911694</id>
3748                             <code>FRACY</code>
3749                             <scientific_name>Fragilariopsis cylindrus</scientific_name>
3750                             <authority>Krieger</authority>
3751                             <synonym>Nitzschia cylindrus</synonym>
3752                             <rank>species</rank>
3753                           </taxonomy>
3754                         </clade>
3755                       </clade>
3756                       <clade>
3757                         <name>THAPS</name>
3758                         <taxonomy>
3759                           <id provider="eol">916868</id>
3760                           <code>THAPS</code>
3761                           <scientific_name>Thalassiosira pseudonana</scientific_name>
3762                           <authority>Hasle &amp; Heimdal</authority>
3763                           <common_name>Marine diatom</common_name>
3764                           <synonym>Cyclotella nana</synonym>
3765                           <rank>species</rank>
3766                         </taxonomy>
3767                       </clade>
3768                     </clade>
3769                     <clade>
3770                       <name>AURAN</name>
3771                       <taxonomy>
3772                         <id provider="eol">912461</id>
3773                         <code>AURAN</code>
3774                         <scientific_name>Aureococcus anophagefferens</scientific_name>
3775                         <authority>Hargraves &amp; Sieburth</authority>
3776                         <rank>species</rank>
3777                       </taxonomy>
3778                     </clade>
3779                   </clade>
3780                   <clade>
3781                     <taxonomy>
3782                       <id provider="uniprot">4783</id>
3783                       <scientific_name>Phytophthora</scientific_name>
3784                       <rank>genus</rank>
3785                     </taxonomy>
3786                     <clade>
3787                       <name>PHYIN</name>
3788                       <taxonomy>
3789                         <id provider="uniprot">4787</id>
3790                         <code>PHYIN</code>
3791                         <scientific_name>Phytophthora infestans</scientific_name>
3792                         <common_name>Potato late blight fungus</common_name>
3793                         <rank>species</rank>
3794                       </taxonomy>
3795                     </clade>
3796                     <clade>
3797                       <name>PHYRM</name>
3798                       <taxonomy>
3799                         <id provider="uniprot">164328</id>
3800                         <code>PHYRM</code>
3801                         <scientific_name>Phytophthora ramorum</scientific_name>
3802                         <common_name>Sudden oak death agent</common_name>
3803                         <rank>species</rank>
3804                       </taxonomy>
3805                     </clade>
3806                     <clade>
3807                       <name>PHYSO</name>
3808                       <taxonomy>
3809                         <id provider="uniprot">67593</id>
3810                         <scientific_name>Phytophthora sojae</scientific_name>
3811                         <rank>species</rank>
3812                       </taxonomy>
3813                     </clade>
3814                   </clade>
3815                 </clade>
3816               </clade>
3817               <clade>
3818                 <name>EMIHU</name>
3819                 <taxonomy>
3820                   <id provider="uniprot">2903</id>
3821                   <code>EMIHU</code>
3822                   <scientific_name>Emiliania huxleyi</scientific_name>
3823                   <rank>species</rank>
3824                 </taxonomy>
3825               </clade>
3826             </clade>
3827           </clade>
3828           <clade>
3829             <name>Excavata</name>
3830             <reference doi="10.1038/nature04546">
3831             </reference>
3832             <clade>
3833               <name>Kinetoplastida_Heterolobosea</name>
3834               <clade>
3835                 <taxonomy>
3836                   <id provider="uniprot">5654</id>
3837                   <scientific_name>Trypanosomatidae</scientific_name>
3838                   <rank>family</rank>
3839                 </taxonomy>
3840                 <clade>
3841                   <name>LEIMA</name>
3842                   <taxonomy>
3843                     <id provider="uniprot">5664</id>
3844                     <code>LEIMA</code>
3845                     <scientific_name>Leishmania major</scientific_name>
3846                     <rank>species</rank>
3847                   </taxonomy>
3848                 </clade>
3849                 <clade>
3850                   <name>TRYBB</name>
3851                   <taxonomy>
3852                     <id provider="uniprot">5702</id>
3853                     <code>TRYBB</code>
3854                     <scientific_name>Trypanosoma brucei brucei</scientific_name>
3855                     <rank>subspecies</rank>
3856                   </taxonomy>
3857                 </clade>
3858               </clade>
3859               <clade>
3860                 <name>NAEGR</name>
3861                 <taxonomy>
3862                   <id provider="uniprot">5762</id>
3863                   <code>NAEGR</code>
3864                   <scientific_name>Naegleria gruberi</scientific_name>
3865                   <common_name>Amoeba</common_name>
3866                   <rank>species</rank>
3867                 </taxonomy>
3868               </clade>
3869             </clade>
3870             <clade>
3871               <name>Metamonada</name>
3872               <clade>
3873                 <name>GIALA</name>
3874                 <taxonomy>
3875                   <id provider="uniprot">5741</id>
3876                   <code>GIALA</code>
3877                   <scientific_name>Giardia lamblia</scientific_name>
3878                   <synonym>Giardia intestinalis</synonym>
3879                   <synonym>Giardia lamblia</synonym>
3880                   <rank>species</rank>
3881                 </taxonomy>
3882               </clade>
3883               <clade>
3884                 <name>TRIVA</name>
3885                 <taxonomy>
3886                   <id provider="uniprot">5722</id>
3887                   <code>TRIVA</code>
3888                   <scientific_name>Trichomonas vaginalis</scientific_name>
3889                   <rank>species</rank>
3890                 </taxonomy>
3891               </clade>
3892             </clade>
3893           </clade>
3894         </clade>
3895       </clade>
3896       <clade>
3897         <taxonomy>
3898           <id provider="uniprot">2157</id>
3899           <scientific_name>Archaea</scientific_name>
3900           <rank>superkingdom</rank>
3901         </taxonomy>
3902         <clade>
3903           <name>a5</name>
3904           <clade>
3905             <name>a1</name>
3906             <clade>
3907               <taxonomy>
3908                 <id provider="uniprot">183924</id>
3909                 <scientific_name>Thermoprotei</scientific_name>
3910                 <rank>class</rank>
3911               </taxonomy>
3912               <clade>
3913                 <name>AERPE</name>
3914                 <taxonomy>
3915                   <id provider="uniprot">272557</id>
3916                   <code>AERPE</code>
3917                   <scientific_name>Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)</scientific_name>
3918                 </taxonomy>
3919               </clade>
3920               <clade>
3921                 <name>SULSO</name>
3922                 <taxonomy>
3923                   <id provider="uniprot">273057</id>
3924                   <code>SULSO</code>
3925                   <scientific_name>Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)</scientific_name>
3926                 </taxonomy>
3927               </clade>
3928             </clade>
3929             <clade>
3930               <taxonomy>
3931                 <id provider="uniprot">2302</id>
3932                 <scientific_name>Thermoplasma</scientific_name>
3933                 <rank>genus</rank>
3934               </taxonomy>
3935               <clade>
3936                 <name>THEVO</name>
3937                 <taxonomy>
3938                   <id provider="uniprot">273116</id>
3939                   <code>THEVO</code>
3940                   <scientific_name>Thermoplasma volcanium (strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1)</scientific_name>
3941                 </taxonomy>
3942               </clade>
3943               <clade>
3944                 <name>THEAC</name>
3945                 <taxonomy>
3946                   <id provider="uniprot">273075</id>
3947                   <code>THEAC</code>
3948                   <scientific_name>Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)</scientific_name>
3949                 </taxonomy>
3950               </clade>
3951             </clade>
3952           </clade>
3953           <clade>
3954             <taxonomy>
3955               <id provider="uniprot">28890</id>
3956               <scientific_name>Euryarchaeota</scientific_name>
3957               <rank>phylum</rank>
3958             </taxonomy>
3959             <clade>
3960               <name>a4</name>
3961               <clade>
3962                 <name>a3</name>
3963                 <clade>
3964                   <name>a2</name>
3965                   <clade>
3966                     <name>METKA</name>
3967                     <taxonomy>
3968                       <id provider="uniprot">190192</id>
3969                       <code>METKA</code>
3970                       <scientific_name>Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938)</scientific_name>
3971                     </taxonomy>
3972                   </clade>
3973                   <clade>
3974                     <name>METJA</name>
3975                     <taxonomy>
3976                       <id provider="uniprot">243232</id>
3977                       <code>METJA</code>
3978                       <scientific_name>Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)</scientific_name>
3979                       <synonym>Methanococcus jannaschii</synonym>
3980                     </taxonomy>
3981                   </clade>
3982                 </clade>
3983                 <clade>
3984                   <name>METTH</name>
3985                   <taxonomy>
3986                     <id provider="uniprot">187420</id>
3987                     <code>METTH</code>
3988                     <scientific_name>Methanobacterium thermoautotrophicum (strain Delta H)</scientific_name>
3989                   </taxonomy>
3990                 </clade>
3991               </clade>
3992               <clade>
3993                 <name>ARCFU</name>
3994                 <taxonomy>
3995                   <id provider="uniprot">224325</id>
3996                   <code>ARCFU</code>
3997                   <scientific_name>Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)</scientific_name>
3998                 </taxonomy>
3999               </clade>
4000             </clade>
4001             <clade>
4002               <taxonomy>
4003                 <id provider="uniprot">2260</id>
4004                 <scientific_name>Pyrococcus</scientific_name>
4005                 <rank>genus</rank>
4006               </taxonomy>
4007               <clade>
4008                 <name>PYRAB</name>
4009                 <taxonomy>
4010                   <id provider="uniprot">272844</id>
4011                   <code>PYRAB</code>
4012                   <scientific_name>Pyrococcus abyssi (strain GE5 / Orsay)</scientific_name>
4013                 </taxonomy>
4014               </clade>
4015               <clade>
4016                 <name>PYRHO</name>
4017                 <taxonomy>
4018                   <id provider="uniprot">70601</id>
4019                   <code>PYRHO</code>
4020                   <scientific_name>Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)</scientific_name>
4021                 </taxonomy>
4022               </clade>
4023             </clade>
4024           </clade>
4025         </clade>
4026         <clade>
4027           <name>HALSP</name>
4028           <taxonomy>
4029             <id provider="uniprot">2243</id>
4030             <code>HALSP</code>
4031             <scientific_name>Halobacterium sp.</scientific_name>
4032             <rank>species</rank>
4033           </taxonomy>
4034         </clade>
4035       </clade>
4036     </clade>
4037     <clade>
4038       <taxonomy>
4039         <id provider="uniprot">2</id>
4040         <scientific_name>Bacteria</scientific_name>
4041         <rank>superkingdom</rank>
4042       </taxonomy>
4043       <clade>
4044         <name>b9</name>
4045         <clade>
4046           <name>b2</name>
4047           <clade>
4048             <name>b1</name>
4049             <clade>
4050               <taxonomy>
4051                 <id provider="uniprot">213849</id>
4052                 <scientific_name>Campylobacterales</scientific_name>
4053                 <rank>order</rank>
4054               </taxonomy>
4055               <clade>
4056                 <name>HELPH</name>
4057                 <taxonomy>
4058                   <id provider="uniprot">357544</id>
4059                   <code>HELPH</code>
4060                   <scientific_name>Helicobacter pylori (strain HPAG1)</scientific_name>
4061                   <synonym>Campylobacter pylori</synonym>
4062                   <rank>species</rank>
4063                 </taxonomy>
4064               </clade>
4065               <clade>
4066                 <name>CAMJE</name>
4067                 <taxonomy>
4068                   <id provider="uniprot">197</id>
4069                   <code>CAMJE</code>
4070                   <scientific_name>Campylobacter jejuni</scientific_name>
4071                   <rank>species</rank>
4072                 </taxonomy>
4073               </clade>
4074             </clade>
4075             <clade>
4076               <name>AQUAE</name>
4077               <taxonomy>
4078                 <id provider="uniprot">63363</id>
4079                 <code>AQUAE</code>
4080                 <scientific_name>Aquifex aeolicus</scientific_name>
4081                 <rank>species</rank>
4082               </taxonomy>
4083             </clade>
4084           </clade>
4085           <clade>
4086             <name>b3</name>
4087             <clade>
4088               <taxonomy>
4089                 <id provider="uniprot">2092</id>
4090                 <scientific_name>Mycoplasmataceae</scientific_name>
4091                 <rank>family</rank>
4092               </taxonomy>
4093               <clade>
4094                 <taxonomy>
4095                   <scientific_name>Mycoplasma</scientific_name>
4096                 </taxonomy>
4097                 <clade>
4098                   <name>MYCGE</name>
4099                   <taxonomy>
4100                     <id provider="uniprot">243273</id>
4101                     <code>MYCGE</code>
4102                     <scientific_name>Mycoplasma genitalium (strain ATCC 33530 / G-37 / NCTC 10195)</scientific_name>
4103                   </taxonomy>
4104                 </clade>
4105                 <clade>
4106                   <name>MYCPN</name>
4107                   <taxonomy>
4108                     <id provider="uniprot">272634</id>
4109                     <code>MYCPN</code>
4110                     <scientific_name>Mycoplasma pneumoniae (strain ATCC 29342 / M129)</scientific_name>
4111                   </taxonomy>
4112                 </clade>
4113               </clade>
4114               <clade>
4115                 <name>UREPA</name>
4116                 <taxonomy>
4117                   <id provider="uniprot">134821</id>
4118                   <code>UREPA</code>
4119                   <scientific_name>Ureaplasma parvum</scientific_name>
4120                   <synonym>Ureaplasma urealyticum biotype 1</synonym>
4121                   <rank>species</rank>
4122                 </taxonomy>
4123               </clade>
4124             </clade>
4125             <clade>
4126               <name>BORBU</name>
4127               <taxonomy>
4128                 <id provider="uniprot">139</id>
4129                 <code>BORBU</code>
4130                 <scientific_name>Borrelia burgdorferi</scientific_name>
4131                 <common_name>Lyme disease spirochete</common_name>
4132                 <rank>species</rank>
4133               </taxonomy>
4134             </clade>
4135           </clade>
4136         </clade>
4137         <clade>
4138           <name>b8</name>
4139           <clade>
4140             <name>b6</name>
4141             <clade>
4142               <name>b5</name>
4143               <clade>
4144                 <name>b4</name>
4145                 <clade>
4146                   <taxonomy>
4147                     <id provider="uniprot">1117</id>
4148                     <scientific_name>Cyanobacteria</scientific_name>
4149                     <rank>phylum</rank>
4150                   </taxonomy>
4151                   <clade>
4152                     <name>NOSS7</name>
4153                     <taxonomy>
4154                       <id provider="uniprot">28072</id>
4155                       <code>NOSS7</code>
4156                       <scientific_name>Nostoc sp. (strain PCC 7524)</scientific_name>
4157                       <rank>species</rank>
4158                     </taxonomy>
4159                   </clade>
4160                   <clade>
4161                     <name>SYNY3</name>
4162                     <taxonomy>
4163                       <id provider="uniprot">1148</id>
4164                       <code>SYNY3</code>
4165                       <scientific_name>Synechocystis sp. (strain ATCC 27184 / PCC 6803 / N-1)</scientific_name>
4166                       <rank>species</rank>
4167                     </taxonomy>
4168                   </clade>
4169                 </clade>
4170                 <clade>
4171                   <name>DEIRA</name>
4172                   <taxonomy>
4173                     <id provider="uniprot">1299</id>
4174                     <code>DEIRA</code>
4175                     <scientific_name>Deinococcus radiodurans</scientific_name>
4176                     <rank>species</rank>
4177                   </taxonomy>
4178                 </clade>
4179               </clade>
4180               <clade>
4181                 <name>MYCTU</name>
4182                 <taxonomy>
4183                   <id provider="uniprot">1773</id>
4184                   <code>MYCTU</code>
4185                   <scientific_name>Mycobacterium tuberculosis</scientific_name>
4186                   <rank>species</rank>
4187                 </taxonomy>
4188               </clade>
4189             </clade>
4190             <clade>
4191               <taxonomy>
4192                 <id provider="uniprot">1236</id>
4193                 <scientific_name>Gammaproteobacteria</scientific_name>
4194                 <rank>class</rank>
4195               </taxonomy>
4196               <clade>
4197                 <name>b7</name>
4198                 <clade>
4199                   <taxonomy>
4200                     <id provider="uniprot">543</id>
4201                     <scientific_name>Enterobacteriaceae</scientific_name>
4202                     <rank>family</rank>
4203                   </taxonomy>
4204                   <clade>
4205                     <name>ECOLI</name>
4206                     <taxonomy>
4207                       <id provider="uniprot">83333</id>
4208                       <code>ECOLI</code>
4209                       <scientific_name>Escherichia coli (strain K12)</scientific_name>
4210                     </taxonomy>
4211                   </clade>
4212                   <clade>
4213                     <name>SALTY</name>
4214                     <taxonomy>
4215                       <id provider="uniprot">90371</id>
4216                       <code>SALTY</code>
4217                       <scientific_name>Salmonella typhimurium</scientific_name>
4218                     </taxonomy>
4219                   </clade>
4220                 </clade>
4221                 <clade>
4222                   <name>VIBCH</name>
4223                   <taxonomy>
4224                     <id provider="uniprot">666</id>
4225                     <code>VIBCH</code>
4226                     <scientific_name>Vibrio cholerae</scientific_name>
4227                     <rank>species</rank>
4228                   </taxonomy>
4229                 </clade>
4230               </clade>
4231               <clade>
4232                 <name>HAEIN</name>
4233                 <taxonomy>
4234                   <id provider="uniprot">71421</id>
4235                   <code>HAEIN</code>
4236                   <scientific_name>Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)</scientific_name>
4237                 </taxonomy>
4238               </clade>
4239             </clade>
4240           </clade>
4241           <clade>
4242             <taxonomy>
4243               <id provider="uniprot">1239</id>
4244               <scientific_name>Firmicutes</scientific_name>
4245               <rank>phylum</rank>
4246             </taxonomy>
4247             <clade>
4248               <taxonomy>
4249                 <id provider="uniprot">91061</id>
4250                 <scientific_name>Bacilli</scientific_name>
4251                 <synonym>Bacillus/Lactobacillus/Streptococcus group</synonym>
4252                 <rank>class</rank>
4253               </taxonomy>
4254               <clade>
4255                 <name>STRPN</name>
4256                 <taxonomy>
4257                   <id provider="uniprot">1313</id>
4258                   <code>STRPN</code>
4259                   <scientific_name>Streptococcus pneumoniae</scientific_name>
4260                   <rank>species</rank>
4261                 </taxonomy>
4262               </clade>
4263               <clade>
4264                 <name>BACSU</name>
4265                 <taxonomy>
4266                   <id provider="uniprot">1423</id>
4267                   <code>BACSU</code>
4268                   <scientific_name>Bacillus subtilis</scientific_name>
4269                   <rank>species</rank>
4270                 </taxonomy>
4271               </clade>
4272             </clade>
4273             <clade>
4274               <name>EUBR3</name>
4275               <taxonomy>
4276                 <id provider="uniprot">515619</id>
4277                 <code>EUBR3</code>
4278                 <scientific_name>Eubacterium rectale (strain ATCC 33656 / VPI 0990)</scientific_name>
4279               </taxonomy>
4280             </clade>
4281           </clade>
4282         </clade>
4283         <clade>
4284           <name>BACTN</name>
4285           <taxonomy>
4286             <id provider="uniprot">818</id>
4287             <code>BACTN</code>
4288             <scientific_name>Bacteroides thetaiotaomicron</scientific_name>
4289             <rank>species</rank>
4290           </taxonomy>
4291         </clade>
4292       </clade>
4293       <clade>
4294         <name>THEMA</name>
4295         <taxonomy>
4296           <id provider="uniprot">2336</id>
4297           <code>THEMA</code>
4298           <scientific_name>Thermotoga maritima</scientific_name>
4299           <rank>species</rank>
4300         </taxonomy>
4301       </clade>
4302     </clade>
4303   </clade>
4304 </phylogeny>
4305 </phyloxml>