forester/aptx/aptx_example_files/tol_139.xml

   1 <?xml version="1.0" encoding="UTF-8"?>
   2 <phyloxml xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.phyloxml.org http://www.phyloxml.org/1.10/phyloxml.xsd" xmlns="http://www.phyloxml.org">
   3 <phylogeny rooted="true" rerootable="false">
   4   <clade>
   5     <name>cellular_organisms</name>
   6     <clade>
   7       <name>Neomura</name>
   8       <clade>
   9         <taxonomy>
  10           <id provider="uniprot">2759</id>
  11           <scientific_name>Eukaryota</scientific_name>
  12           <rank>superkingdom</rank>
  13         </taxonomy>
  14         <clade>
  15           <name>Unikonta</name>
  16           <clade>
  17             <name>Opisthokonta &amp; Apusozoa</name>
  18             <clade>
  19               <taxonomy>
  20                 <id provider="uniprot">33154</id>
  21                 <scientific_name>Opisthokonta</scientific_name>
  22                 <common_name>Fungi/Metazoa group</common_name>
  23               </taxonomy>
  24               <clade>
  25                 <taxonomy>
  26                   <scientific_name>Holozoa</scientific_name>
  27                 </taxonomy>
  28                 <clade>
  29                   <name>Choanoflagellatea &amp; Metazoa</name>
  30                   <clade>
  31                     <name>Metazoa</name>
  32                     <taxonomy>
  33                       <id provider="uniprot">33208</id>
  34                       <scientific_name>Metazoa</scientific_name>
  35                       <rank>kingdom</rank>
  36                     </taxonomy>
  37                     <clade>
  38                       <name>Eumetazoa</name>
  39                       <reference doi="10.1038/nature06614">
  40                       </reference>
  41                       <clade>
  42                         <name>Bilateria_Cnidaria</name>
  43                         <clade>
  44                           <name>Bilateria</name>
  45                           <clade>
  46                             <name>Deuterostomia</name>
  47                             <reference doi="10.1038/nature04336">
  48                             </reference>
  49                             <clade>
  50                               <name>Chordata</name>
  51                               <taxonomy>
  52                                 <id provider="uniprot">7711</id>
  53                                 <scientific_name>Chordata</scientific_name>
  54                                 <rank>phylum</rank>
  55                               </taxonomy>
  56                               <clade>
  57                                 <name>Urochordata &amp; Vertebrata</name>
  58                                 <clade>
  59                                   <taxonomy>
  60                                     <id provider="uniprot">7742</id>
  61                                     <scientific_name>Vertebrata</scientific_name>
  62                                   </taxonomy>
  63                                   <clade>
  64                                     <taxonomy>
  65                                       <id provider="uniprot">7776</id>
  66                                       <scientific_name>Gnathostomata</scientific_name>
  67                                       <common_name>jawed vertebrates</common_name>
  68                                       <rank>superclass</rank>
  69                                     </taxonomy>
  70                                     <clade>
  71                                       <taxonomy>
  72                                         <id provider="uniprot">117571</id>
  73                                         <scientific_name>Euteleostomi</scientific_name>
  74                                       </taxonomy>
  75                                       <clade>
  76                                         <name>Tetrapoda</name>
  77                                         <clade>
  78                                           <name>Amniota</name>
  79                                           <clade>
  80                                             <taxonomy>
  81                                               <id provider="uniprot">40674</id>
  82                                               <scientific_name>Mammalia</scientific_name>
  83                                               <rank>class</rank>
  84                                             </taxonomy>
  85                                             <clade>
  86                                               <name>Theria</name>
  87                                               <clade>
  88                                                 <taxonomy>
  89                                                   <id provider="uniprot">9347</id>
  90                                                   <scientific_name>Eutheria</scientific_name>
  91                                                   <common_name>Placental mammals</common_name>
  92                                                 </taxonomy>
  93                                                 <reference doi="10.1002/bies.200900053">
  94                                                   <desc>The new framework for understanding placental mammal evolution</desc>
  95                                                 </reference>
  96                                                 <clade>
  97                                                   <taxonomy>
  98                                                     <scientific_name>Boreoeutheria</scientific_name>
  99                                                     <synonym>Boreotheria</synonym>
 100                                                   </taxonomy>
 101                                                   <clade>
 102                                                     <taxonomy>
 103                                                       <id provider="uniprot">314146</id>
 104                                                       <scientific_name>Euarchontoglires</scientific_name>
 105                                                       <rank>superorder</rank>
 106                                                     </taxonomy>
 107                                                     <clade>
 108                                                       <taxonomy>
 109                                                         <scientific_name>Euarchonta</scientific_name>
 110                                                       </taxonomy>
 111                                                       <clade>
 112                                                         <taxonomy>
 113                                                           <id provider="uniprot">9443</id>
 114                                                           <scientific_name>Primates</scientific_name>
 115                                                           <rank>order</rank>
 116                                                         </taxonomy>
 117                                                         <clade>
 118                                                           <taxonomy>
 119                                                             <id provider="uniprot">376913</id>
 120                                                             <scientific_name>Haplorrhini</scientific_name>
 121                                                             <rank>suborder</rank>
 122                                                           </taxonomy>
 123                                                           <clade>
 124                                                             <taxonomy>
 125                                                               <id provider="uniprot">314293</id>
 126                                                               <scientific_name>Simiiformes</scientific_name>
 127                                                               <rank>infraorder</rank>
 128                                                             </taxonomy>
 129                                                             <clade>
 130                                                               <taxonomy>
 131                                                                 <id provider="uniprot">9526</id>
 132                                                                 <scientific_name>Catarrhini</scientific_name>
 133                                                               </taxonomy>
 134                                                               <clade>
 135                                                                 <taxonomy>
 136                                                                   <id provider="uniprot">314295</id>
 137                                                                   <scientific_name>Hominoidea</scientific_name>
 138                                                                   <common_name>Apes</common_name>
 139                                                                   <rank>superfamily</rank>
 140                                                                 </taxonomy>
 141                                                                 <clade>
 142                                                                   <taxonomy>
 143                                                                     <id provider="uniprot">9604</id>
 144                                                                     <scientific_name>Hominidae</scientific_name>
 145                                                                     <common_name>Great apes</common_name>
 146                                                                     <rank>family</rank>
 147                                                                   </taxonomy>
 148                                                                   <clade>
 149                                                                     <taxonomy>
 150                                                                       <id provider="uniprot">207598</id>
 151                                                                       <scientific_name>Homininae</scientific_name>
 152                                                                       <rank>subfamily</rank>
 153                                                                     </taxonomy>
 154                                                                     <clade>
 155                                                                       <taxonomy>
 156                                                                         <scientific_name>Hominini</scientific_name>
 157                                                                         <rank>tribe</rank>
 158                                                                       </taxonomy>
 159                                                                       <clade>
 160                                                                         <taxonomy>
 161                                                                           <id provider="uniprot">9606</id>
 162                                                                           <code>HUMAN</code>
 163                                                                           <scientific_name>Homo sapiens</scientific_name>
 164                                                                           <common_name>Human</common_name>
 165                                                                           <rank>species</rank>
 166                                                                           <uri>http://www.thehindu.com/multimedia/dynamic/00029/IN05_DARWIN_29896f.jpg</uri>
 167                                                                         </taxonomy>
 168                                                                       </clade>
 169                                                                       <clade>
 170                                                                         <taxonomy>
 171                                                                           <id provider="uniprot">9598</id>
 172                                                                           <code>PANTR</code>
 173                                                                           <scientific_name>Pan troglodytes</scientific_name>
 174                                                                           <common_name>Chimpanzee</common_name>
 175                                                                           <rank>species</rank>
 176                                                                           <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/8/8b/Schimpanse_zoo-leipig.jpg/800px-Schimpanse_zoo-leipig.jpg</uri>
 177                                                                         </taxonomy>
 178                                                                       </clade>
 179                                                                     </clade>
 180                                                                     <clade>
 181                                                                       <taxonomy>
 182                                                                         <id provider="uniprot">9595</id>
 183                                                                         <code>GORGO</code>
 184                                                                         <scientific_name>Gorilla gorilla gorilla</scientific_name>
 185                                                                         <common_name>Western lowland gorilla</common_name>
 186                                                                         <rank>subspecies</rank>
 187                                                                         <uri>http://upload.wikimedia.org/wikipedia/commons/c/c7/Stavenn_Gorilla_gorilla_00.jpg</uri>
 188                                                                       </taxonomy>
 189                                                                     </clade>
 190                                                                   </clade>
 191                                                                   <clade>
 192                                                                     <taxonomy>
 193                                                                       <id provider="uniprot">9601</id>
 194                                                                       <code>PONAB</code>
 195                                                                       <scientific_name>Pongo abelii</scientific_name>
 196                                                                       <common_name>Sumatran orangutan</common_name>
 197                                                                       <synonym>Pongo pygmaeus abelii</synonym>
 198                                                                       <rank>species</rank>
 199                                                                       <uri>http://www.kidszoo.org/images/animals/orangutan.jpg</uri>
 200                                                                     </taxonomy>
 201                                                                   </clade>
 202                                                                 </clade>
 203                                                                 <clade>
 204                                                                   <taxonomy>
 205                                                                     <id provider="uniprot">61853</id>
 206                                                                     <code>NOMLE</code>
 207                                                                     <scientific_name>Nomascus leucogenys</scientific_name>
 208                                                                     <common_name>Northern white-cheeked gibbon</common_name>
 209                                                                     <synonym>Hylobates leucogenys</synonym>
 210                                                                     <synonym>Hylobates concolor leucogenys</synonym>
 211                                                                     <rank>species</rank>
 212                                                                     <uri>http://uswest.ensembl.org/img/species/pic_Nomascus_leucogenys.png</uri>
 213                                                                     <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/1/1b/Hylobates_concolor2.jpg/450px-Hylobates_concolor2.jpg</uri>
 214                                                                   </taxonomy>
 215                                                                 </clade>
 216                                                               </clade>
 217                                                               <clade>
 218                                                                 <taxonomy>
 219                                                                   <id provider="uniprot">9528</id>
 220                                                                   <scientific_name>Cercopithecinae</scientific_name>
 221                                                                   <rank>subfamily</rank>
 222                                                                 </taxonomy>
 223                                                                 <clade>
 224                                                                   <taxonomy>
 225                                                                     <id provider="uniprot">9544</id>
 226                                                                     <code>MACMU</code>
 227                                                                     <scientific_name>Macaca mulatta</scientific_name>
 228                                                                     <common_name>Rhesus macaque</common_name>
 229                                                                     <rank>species</rank>
 230                                                                     <uri>http://www.biolib.cz/IMG/GAL/39329.jpg</uri>
 231                                                                   </taxonomy>
 232                                                                 </clade>
 233                                                                 <clade>
 234                                                                   <taxonomy>
 235                                                                     <id provider="uniprot">9557</id>
 236                                                                     <code>PAPHA</code>
 237                                                                     <scientific_name>Papio hamadryas</scientific_name>
 238                                                                     <common_name>Hamadryas baboon</common_name>
 239                                                                     <rank>species</rank>
 240                                                                     <uri>http://pin.primate.wisc.edu/fs/sheets/images/227lg.jpg</uri>
 241                                                                   </taxonomy>
 242                                                                 </clade>
 243                                                               </clade>
 244                                                             </clade>
 245                                                             <clade>
 246                                                               <taxonomy>
 247                                                                 <id provider="uniprot">9483</id>
 248                                                                 <code>CALJA</code>
 249                                                                 <scientific_name>Callithrix jacchus</scientific_name>
 250                                                                 <common_name>White-tufted-ear marmoset</common_name>
 251                                                                 <synonym>Callithrix jacchus jacchus</synonym>
 252                                                                 <rank>species</rank>
 253                                                                 <uri>http://www.arthurgrosset.com/mammals/photos/caljac28086.jpg</uri>
 254                                                               </taxonomy>
 255                                                             </clade>
 256                                                           </clade>
 257                                                           <clade>
 258                                                             <taxonomy>
 259                                                               <id provider="uniprot">9478</id>
 260                                                               <code>TARSY</code>
 261                                                               <scientific_name>Tarsius syrichta</scientific_name>
 262                                                               <common_name>Philippine tarsier</common_name>
 263                                                               <rank>species</rank>
 264                                                               <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0408/1425.jpeg</uri>
 265                                                             </taxonomy>
 266                                                           </clade>
 267                                                         </clade>
 268                                                         <clade>
 269                                                           <taxonomy>
 270                                                             <id provider="uniprot">376911</id>
 271                                                             <scientific_name>Strepsirrhini</scientific_name>
 272                                                             <rank>suborder</rank>
 273                                                           </taxonomy>
 274                                                           <clade>
 275                                                             <taxonomy>
 276                                                               <id provider="uniprot">30611</id>
 277                                                               <code>OTOGA</code>
 278                                                               <scientific_name>Otolemur garnettii</scientific_name>
 279                                                               <common_name>Garnett&apos;s greater bushbaby</common_name>
 280                                                               <synonym>Galago garnetti</synonym>
 281                                                               <synonym>Small-eared galago</synonym>
 282                                                               <synonym>Garnett&apos;s greater bushbaby</synonym>
 283                                                               <rank>species</rank>
 284                                                               <uri>http://www.mbweni.com/images/Mbweni%20Images/naturetrail/small-earedgalago.jpg</uri>
 285                                                             </taxonomy>
 286                                                           </clade>
 287                                                           <clade>
 288                                                             <taxonomy>
 289                                                               <id provider="uniprot">30608</id>
 290                                                               <code>MICMU</code>
 291                                                               <scientific_name>Microcebus murinus</scientific_name>
 292                                                               <common_name>Lesser mouse lemur</common_name>
 293                                                               <rank>species</rank>
 294                                                               <uri>http://daniel.montagnon.pagesperso-orange.fr/images/MicrocbusMurinus.jpg</uri>
 295                                                             </taxonomy>
 296                                                           </clade>
 297                                                         </clade>
 298                                                       </clade>
 299                                                       <clade>
 300                                                         <taxonomy>
 301                                                           <id provider="uniprot">37347</id>
 302                                                           <code>TUPBE</code>
 303                                                           <scientific_name>Tupaia belangeri</scientific_name>
 304                                                           <common_name>Common tree shrew</common_name>
 305                                                           <synonym>Tupaia glis belangeri</synonym>
 306                                                           <rank>species</rank>
 307                                                           <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/4/44/Tupaia_belangeri.JPG/800px-Tupaia_belangeri.JPG</uri>
 308                                                         </taxonomy>
 309                                                       </clade>
 310                                                     </clade>
 311                                                     <clade>
 312                                                       <taxonomy>
 313                                                         <id provider="uniprot">314147</id>
 314                                                         <scientific_name>Glires</scientific_name>
 315                                                         <common_name>Rodents and rabbits</common_name>
 316                                                       </taxonomy>
 317                                                       <clade>
 318                                                         <taxonomy>
 319                                                           <id provider="uniprot">9989</id>
 320                                                           <scientific_name>Rodentia</scientific_name>
 321                                                           <rank>order</rank>
 322                                                         </taxonomy>
 323                                                         <clade>
 324                                                           <name>Ctenohystrica &amp; Mouse-related clade</name>
 325                                                           <reference doi="10.1186/1471-2148-9-71">
 326                                                             <desc>Rodent phylogeny revised: analysis of six nuclear genes from all major rodent clades.</desc>
 327                                                           </reference>
 328                                                           <clade>
 329                                                             <taxonomy>
 330                                                               <common_name>Mouse-related clade</common_name>
 331                                                             </taxonomy>
 332                                                             <clade>
 333                                                               <taxonomy>
 334                                                                 <id provider="uniprot">337687</id>
 335                                                                 <scientific_name>Muroidea</scientific_name>
 336                                                               </taxonomy>
 337                                                               <clade>
 338                                                                 <taxonomy>
 339                                                                   <id provider="uniprot">39107</id>
 340                                                                   <scientific_name>Murinae</scientific_name>
 341                                                                   <rank>subfamily</rank>
 342                                                                 </taxonomy>
 343                                                                 <clade>
 344                                                                   <taxonomy>
 345                                                                     <id provider="uniprot">10090</id>
 346                                                                     <code>MOUSE</code>
 347                                                                     <scientific_name>Mus musculus</scientific_name>
 348                                                                     <common_name>Mouse</common_name>
 349                                                                     <rank>species</rank>
 350                                                                     <uri>http://www.zoologi.no/patlas/images/husmus-RS.jpg</uri>
 351                                                                   </taxonomy>
 352                                                                 </clade>
 353                                                                 <clade>
 354                                                                   <taxonomy>
 355                                                                     <id provider="uniprot">10116</id>
 356                                                                     <code>RAT</code>
 357                                                                     <scientific_name>Rattus norvegicus</scientific_name>
 358                                                                     <common_name>Rat</common_name>
 359                                                                     <rank>species</rank>
 360                                                                     <uri>http://upload.wikimedia.org/wikipedia/commons/0/01/Rattus_norvegicus_1.jpg</uri>
 361                                                                   </taxonomy>
 362                                                                 </clade>
 363                                                               </clade>
 364                                                               <clade>
 365                                                                 <taxonomy>
 366                                                                   <id provider="uniprot">10036</id>
 367                                                                   <code>MESAU</code>
 368                                                                   <scientific_name>Mesocricetus auratus</scientific_name>
 369                                                                   <common_name>Golden hamster</common_name>
 370                                                                   <rank>species</rank>
 371                                                                   <uri>http://www.zipcodezoo.com/hp350/Mesocricetus_auratus_0.jpg</uri>
 372                                                                 </taxonomy>
 373                                                               </clade>
 374                                                             </clade>
 375                                                             <clade>
 376                                                               <taxonomy>
 377                                                                 <id provider="uniprot">10020</id>
 378                                                                 <code>DIPOR</code>
 379                                                                 <scientific_name>Dipodomys ordii</scientific_name>
 380                                                                 <common_name>Ord&apos;s kangaroo rat</common_name>
 381                                                                 <rank>species</rank>
 382                                                                 <uri>http://www.nsrl.ttu.edu/tmot1/images/dipoordi.jpg</uri>
 383                                                               </taxonomy>
 384                                                             </clade>
 385                                                           </clade>
 386                                                           <clade>
 387                                                             <taxonomy>
 388                                                               <id provider="uniprot">10141</id>
 389                                                               <code>CAVPO</code>
 390                                                               <scientific_name>Cavia porcellus</scientific_name>
 391                                                               <common_name>Guinea pig</common_name>
 392                                                               <rank>species</rank>
 393                                                               <uri>http://upload.wikimedia.org/wikipedia/commons/7/77/Guinea_1.jpg</uri>
 394                                                             </taxonomy>
 395                                                           </clade>
 396                                                         </clade>
 397                                                         <clade>
 398                                                           <taxonomy>
 399                                                             <id provider="uniprot">43179</id>
 400                                                             <code>SPETR</code>
 401                                                             <scientific_name>Spermophilus tridecemlineatus</scientific_name>
 402                                                             <common_name>Thirteen-lined ground squirrel</common_name>
 403                                                             <synonym>Ictidomys tridecemlineatus</synonym>
 404                                                             <rank>species</rank>
 405                                                             <uri>http://animaldiversity.ummz.umich.edu/site/resources/phil_myers/ADW_mammals/Rodentia/Spermophilus4345.jpg/medium.jpg</uri>
 406                                                           </taxonomy>
 407                                                         </clade>
 408                                                       </clade>
 409                                                       <clade>
 410                                                         <taxonomy>
 411                                                           <id provider="uniprot">9975</id>
 412                                                           <scientific_name>Lagomorpha</scientific_name>
 413                                                           <common_name>Rabbits, hares, pikas</common_name>
 414                                                           <rank>order</rank>
 415                                                         </taxonomy>
 416                                                         <clade>
 417                                                           <taxonomy>
 418                                                             <id provider="uniprot">9986</id>
 419                                                             <code>RABIT</code>
 420                                                             <scientific_name>Oryctolagus cuniculus</scientific_name>
 421                                                             <common_name>Rabbit</common_name>
 422                                                             <rank>species</rank>
 423                                                             <uri>http://www.animalpictures.tk/wp-content/uploads/pictures/pictures-of-rabbit-pictures-818.jpg</uri>
 424                                                             <uri>http://greennature.com/gallery/farm-animal-pictures/albino_rabbit.jpg</uri>
 425                                                           </taxonomy>
 426                                                         </clade>
 427                                                         <clade>
 428                                                           <taxonomy>
 429                                                             <id provider="uniprot">9978</id>
 430                                                             <code>OCHPR</code>
 431                                                             <scientific_name>Ochotona princeps</scientific_name>
 432                                                             <common_name>Southern American pika</common_name>
 433                                                             <rank>species</rank>
 434                                                             <uri>http://upload.wikimedia.org/wikipedia/commons/3/3b/Ochotona_princeps.jpg</uri>
 435                                                           </taxonomy>
 436                                                         </clade>
 437                                                       </clade>
 438                                                     </clade>
 439                                                   </clade>
 440                                                   <clade>
 441                                                     <taxonomy>
 442                                                       <id provider="uniprot">314145</id>
 443                                                       <scientific_name>Laurasiatheria</scientific_name>
 444                                                       <rank>superorder</rank>
 445                                                     </taxonomy>
 446                                                     <clade>
 447                                                       <taxonomy>
 448                                                         <scientific_name>Scrotifera</scientific_name>
 449                                                       </taxonomy>
 450                                                       <clade>
 451                                                         <name>Perissodactyla &amp; Cetartiodactyla &amp; Chiroptera</name>
 452                                                         <clade>
 453                                                           <name>Perissodactyla &amp; Cetartiodactyla</name>
 454                                                           <clade>
 455                                                             <taxonomy>
 456                                                               <id provider="uniprot">91561</id>
 457                                                               <scientific_name>Cetartiodactyla</scientific_name>
 458                                                               <common_name>Even-toed ungulates</common_name>
 459                                                             </taxonomy>
 460                                                             <clade>
 461                                                               <name>Cetruminantia &amp; Suina</name>
 462                                                               <clade>
 463                                                                 <taxonomy>
 464                                                                   <scientific_name>Cetruminantia</scientific_name>
 465                                                                 </taxonomy>
 466                                                                 <clade>
 467                                                                   <taxonomy>
 468                                                                     <id provider="uniprot">9895</id>
 469                                                                     <scientific_name>Bovidae</scientific_name>
 470                                                                     <rank>family</rank>
 471                                                                   </taxonomy>
 472                                                                   <clade>
 473                                                                     <taxonomy>
 474                                                                       <id provider="uniprot">9913</id>
 475                                                                       <code>BOVIN</code>
 476                                                                       <scientific_name>Bos taurus</scientific_name>
 477                                                                       <common_name>Bovine</common_name>
 478                                                                       <synonym>Bos bovis</synonym>
 479                                                                       <rank>species</rank>
 480                                                                       <uri>http://www.biolib.cz/IMG/GAL/18578.jpg</uri>
 481                                                                     </taxonomy>
 482                                                                   </clade>
 483                                                                   <clade>
 484                                                                     <taxonomy>
 485                                                                       <id provider="uniprot">9940</id>
 486                                                                       <code>SHEEP</code>
 487                                                                       <scientific_name>Ovis aries</scientific_name>
 488                                                                       <common_name>Sheep</common_name>
 489                                                                       <rank>species</rank>
 490                                                                       <uri>http://animaldiversity.ummz.umich.edu/site/resources/james_dowlinghealey/blacksheep.jpg/medium.jpg</uri>
 491                                                                     </taxonomy>
 492                                                                   </clade>
 493                                                                 </clade>
 494                                                                 <clade>
 495                                                                   <taxonomy>
 496                                                                     <id provider="uniprot">9721</id>
 497                                                                     <scientific_name>Cetacea</scientific_name>
 498                                                                     <common_name>Whales</common_name>
 499                                                                     <rank>order</rank>
 500                                                                   </taxonomy>
 501                                                                   <clade>
 502                                                                     <taxonomy>
 503                                                                       <id provider="uniprot">9739</id>
 504                                                                       <code>TURTR</code>
 505                                                                       <scientific_name>Tursiops truncatus</scientific_name>
 506                                                                       <common_name>Atlantic bottle-nosed dolphin</common_name>
 507                                                                       <synonym>Delphinus truncatus</synonym>
 508                                                                       <rank>species</rank>
 509                                                                       <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/a/a6/Bottlenose_Dolphin_KSC04pd0178.jpg/800px-Bottlenose_Dolphin_KSC04pd0178.jpg</uri>
 510                                                                     </taxonomy>
 511                                                                   </clade>
 512                                                                   <clade>
 513                                                                     <taxonomy>
 514                                                                       <id provider="uniprot">9771</id>
 515                                                                       <code>BALMU</code>
 516                                                                       <scientific_name>Balaenoptera musculus</scientific_name>
 517                                                                       <common_name>Blue whale</common_name>
 518                                                                       <rank>species</rank>
 519                                                                       <uri>http://2.bp.blogspot.com/_W90V87w3sr8/TT63uRT_U9I/AAAAAAAAAo8/to9O8zEeo7k/s1600/bluewhale.jpg</uri>
 520                                                                     </taxonomy>
 521                                                                   </clade>
 522                                                                 </clade>
 523                                                               </clade>
 524                                                               <clade>
 525                                                                 <taxonomy>
 526                                                                   <id provider="uniprot">9823</id>
 527                                                                   <code>PIG</code>
 528                                                                   <scientific_name>Sus scrofa</scientific_name>
 529                                                                   <common_name>Pig</common_name>
 530                                                                   <rank>species</rank>
 531                                                                   <uri>http://www.batraciens-reptiles.com/sus%20scrofa2.jpg</uri>
 532                                                                 </taxonomy>
 533                                                               </clade>
 534                                                             </clade>
 535                                                             <clade>
 536                                                               <taxonomy>
 537                                                                 <id provider="uniprot">30538</id>
 538                                                                 <code>LAMPA</code>
 539                                                                 <scientific_name>Lama guanicoe pacos</scientific_name>
 540                                                                 <common_name>Alpaca</common_name>
 541                                                                 <synonym>Lama pacos</synonym>
 542                                                                 <rank>species</rank>
 543                                                                 <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/8/8f/A_group_of_Alpacas_on_a_property_including_cria.jpg/800px-A_group_of_Alpacas_on_a_property_including_cria.jpg</uri>
 544                                                               </taxonomy>
 545                                                             </clade>
 546                                                           </clade>
 547                                                           <clade>
 548                                                             <taxonomy>
 549                                                               <id provider="uniprot">9796</id>
 550                                                               <code>HORSE</code>
 551                                                               <scientific_name>Equus caballus</scientific_name>
 552                                                               <common_name>Horse</common_name>
 553                                                               <rank>species</rank>
 554                                                               <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0801/0088.jpeg</uri>
 555                                                             </taxonomy>
 556                                                           </clade>
 557                                                         </clade>
 558                                                         <clade>
 559                                                           <taxonomy>
 560                                                             <id provider="uniprot">9397</id>
 561                                                             <scientific_name>Chiroptera</scientific_name>
 562                                                             <common_name>Bats</common_name>
 563                                                             <rank>order</rank>
 564                                                           </taxonomy>
 565                                                           <clade>
 566                                                             <taxonomy>
 567                                                               <id provider="uniprot">59463</id>
 568                                                               <code>MYOLU</code>
 569                                                               <scientific_name>Myotis lucifugus</scientific_name>
 570                                                               <common_name>Little brown bat</common_name>
 571                                                               <rank>species</rank>
 572                                                               <uri>http://biology.lakeheadu.ca/uploads/Nature_photography/brown_bat.jpg</uri>
 573                                                             </taxonomy>
 574                                                           </clade>
 575                                                           <clade>
 576                                                             <taxonomy>
 577                                                               <id provider="uniprot">132908</id>
 578                                                               <code>PTEVA</code>
 579                                                               <scientific_name>Pteropus vampyrus</scientific_name>
 580                                                               <common_name>Large flying fox</common_name>
 581                                                               <rank>species</rank>
 582                                                               <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/5/5e/Pteropus_vampyrus1.jpg/412px-Pteropus_vampyrus1.jpg</uri>
 583                                                             </taxonomy>
 584                                                           </clade>
 585                                                         </clade>
 586                                                       </clade>
 587                                                       <clade>
 588                                                         <name>Carnivora</name>
 589                                                         <taxonomy>
 590                                                           <id provider="uniprot">33554</id>
 591                                                           <scientific_name>Carnivora</scientific_name>
 592                                                           <rank>order</rank>
 593                                                         </taxonomy>
 594                                                         <clade>
 595                                                           <taxonomy>
 596                                                             <id provider="uniprot">379584</id>
 597                                                             <scientific_name>Caniformia</scientific_name>
 598                                                             <rank>suborder</rank>
 599                                                           </taxonomy>
 600                                                           <clade>
 601                                                             <name>CANFA</name>
 602                                                             <taxonomy>
 603                                                               <id provider="uniprot">9615</id>
 604                                                               <code>CANFA</code>
 605                                                               <scientific_name>Canis familiaris</scientific_name>
 606                                                               <common_name>Dog</common_name>
 607                                                               <synonym>Canis lupus familiaris</synonym>
 608                                                               <rank>subspecies</rank>
 609                                                               <uri>http://upload.wikimedia.org/wikipedia/commons/a/ab/Wikilabrador_jardin.JPG</uri>
 610                                                             </taxonomy>
 611                                                           </clade>
 612                                                           <clade>
 613                                                             <taxonomy>
 614                                                               <id provider="uniprot">9646</id>
 615                                                               <code>AILME</code>
 616                                                               <scientific_name>Ailuropoda melanoleuca</scientific_name>
 617                                                               <common_name>Giant panda</common_name>
 618                                                               <rank>species</rank>
 619                                                               <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/3/3c/Giant_Panda_2004-03-2.jpg/800px-Giant_Panda_2004-03-2.jpg</uri>
 620                                                             </taxonomy>
 621                                                           </clade>
 622                                                         </clade>
 623                                                         <clade>
 624                                                           <name>FELCA</name>
 625                                                           <taxonomy>
 626                                                             <id provider="uniprot">9685</id>
 627                                                             <code>FELCA</code>
 628                                                             <scientific_name>Felis catus</scientific_name>
 629                                                             <common_name>Cat</common_name>
 630                                                             <synonym>Felis silvestris catus</synonym>
 631                                                             <rank>species</rank>
 632                                                             <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/9/9b/Domestic_cat_cropped.jpg/755px-Domestic_cat_cropped.jpg</uri>
 633                                                           </taxonomy>
 634                                                         </clade>
 635                                                       </clade>
 636                                                     </clade>
 637                                                     <clade>
 638                                                       <taxonomy>
 639                                                         <id provider="uniprot">9362</id>
 640                                                         <scientific_name>Insectivora</scientific_name>
 641                                                         <common_name>hedgehogs, shrews, moles and others</common_name>
 642                                                         <rank>order</rank>
 643                                                       </taxonomy>
 644                                                       <clade>
 645                                                         <taxonomy>
 646                                                           <id provider="uniprot">9365</id>
 647                                                           <code>ERIEU</code>
 648                                                           <scientific_name>Erinaceus europaeus</scientific_name>
 649                                                           <common_name>Western European hedgehog</common_name>
 650                                                           <rank>species</rank>
 651                                                           <uri>http://upload.wikimedia.org/wikipedia/commons/d/d4/Igel01.jpg</uri>
 652                                                         </taxonomy>
 653                                                       </clade>
 654                                                       <clade>
 655                                                         <taxonomy>
 656                                                           <id provider="uniprot">42254</id>
 657                                                           <code>SORAR</code>
 658                                                           <scientific_name>Sorex araneus</scientific_name>
 659                                                           <common_name>Eurasian common shrew</common_name>
 660                                                           <synonym>European shrew</synonym>
 661                                                           <rank>species</rank>
 662                                                           <uri>http://www.batraciens-reptiles.com/musaraigne2.jpg</uri>
 663                                                         </taxonomy>
 664                                                       </clade>
 665                                                     </clade>
 666                                                   </clade>
 667                                                 </clade>
 668                                                 <clade>
 669                                                   <taxonomy>
 670                                                     <scientific_name>Atlantogenata</scientific_name>
 671                                                   </taxonomy>
 672                                                   <clade>
 673                                                     <taxonomy>
 674                                                       <id provider="uniprot">311790</id>
 675                                                       <scientific_name>Afrotheria</scientific_name>
 676                                                       <rank>superorder</rank>
 677                                                     </taxonomy>
 678                                                     <clade>
 679                                                       <taxonomy>
 680                                                         <scientific_name>Paenungulata</scientific_name>
 681                                                       </taxonomy>
 682                                                       <clade>
 683                                                         <taxonomy>
 684                                                           <id provider="uniprot">9785</id>
 685                                                           <code>LOXAF</code>
 686                                                           <scientific_name>Loxodonta africana</scientific_name>
 687                                                           <common_name>African savanna elephant</common_name>
 688                                                           <rank>species</rank>
 689                                                           <uri>http://animaldiversity.ummz.umich.edu/site/resources/susan_hoffman/elephants.jpg</uri>
 690                                                         </taxonomy>
 691                                                       </clade>
 692                                                       <clade>
 693                                                         <taxonomy>
 694                                                           <id provider="uniprot">9813</id>
 695                                                           <code>PROCA</code>
 696                                                           <scientific_name>Procavia capensis</scientific_name>
 697                                                           <common_name>Cape hyrax</common_name>
 698                                                           <synonym>Rock dassie</synonym>
 699                                                           <rank>species</rank>
 700                                                           <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/1206/0460.jpeg</uri>
 701                                                         </taxonomy>
 702                                                       </clade>
 703                                                     </clade>
 704                                                     <clade>
 705                                                       <taxonomy>
 706                                                         <id provider="uniprot">9371</id>
 707                                                         <code>ECHTE</code>
 708                                                         <scientific_name>Echinops telfairi</scientific_name>
 709                                                         <common_name>Lesser hedgehog tenrec</common_name>
 710                                                         <rank>species</rank>
 711                                                         <uri>http://animaldiversity.ummz.umich.edu/site/resources/david_kupitz/etelfairi.jpg</uri>
 712                                                       </taxonomy>
 713                                                     </clade>
 714                                                   </clade>
 715                                                   <clade>
 716                                                     <taxonomy>
 717                                                       <id provider="uniprot">9348</id>
 718                                                       <scientific_name>Xenarthra</scientific_name>
 719                                                       <synonym>Edentata</synonym>
 720                                                       <rank>superorder</rank>
 721                                                     </taxonomy>
 722                                                     <clade>
 723                                                       <taxonomy>
 724                                                         <id provider="uniprot">9358</id>
 725                                                         <code>CHOHO</code>
 726                                                         <scientific_name>Choloepus hoffmanni</scientific_name>
 727                                                         <common_name>Hoffmann&apos;s two-fingered sloth</common_name>
 728                                                         <rank>species</rank>
 729                                                         <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/8/89/Sloth8.jpg/800px-Sloth8.jpg</uri>
 730                                                       </taxonomy>
 731                                                     </clade>
 732                                                     <clade>
 733                                                       <taxonomy>
 734                                                         <id provider="uniprot">9361</id>
 735                                                         <code>DASNO</code>
 736                                                         <scientific_name>Dasypus novemcinctus</scientific_name>
 737                                                         <common_name>Nine-banded armadillo</common_name>
 738                                                         <rank>species</rank>
 739                                                         <uri>http://images.enature.com/mammals/mammals_l/ma0154_1l.jpg</uri>
 740                                                         <uri>http://anthropometaphors.files.wordpress.com/2008/11/nine-banded-armadillo41.jpg</uri>
 741                                                       </taxonomy>
 742                                                     </clade>
 743                                                   </clade>
 744                                                 </clade>
 745                                               </clade>
 746                                               <clade>
 747                                                 <taxonomy>
 748                                                   <id provider="uniprot">9263</id>
 749                                                   <scientific_name>Metatheria</scientific_name>
 750                                                   <common_name>Marsupials</common_name>
 751                                                 </taxonomy>
 752                                                 <distribution>
 753                                                   <point geodetic_datum="?" alt_unit="?">
 754                                                     <lat>0</lat>
 755                                                     <long>0</long>
 756                                                     <alt>0</alt>
 757                                                   </point>
 758                                                 </distribution>
 759                                                 <reference doi="10.1016/j.ympev.2004.05.004">
 760                                                   <desc>First combined cladistic analysis of marsupial mammal interrelationships</desc>
 761                                                 </reference>
 762                                                 <reference>
 763                                                 </reference>
 764                                                 <clade>
 765                                                   <name>MONDO</name>
 766                                                   <taxonomy>
 767                                                     <id provider="uniprot">13616</id>
 768                                                     <code>MONDO</code>
 769                                                     <scientific_name>Monodelphis domestica</scientific_name>
 770                                                     <common_name>Short-tailed gray opossum</common_name>
 771                                                     <rank>species</rank>
 772                                                     <uri>http://animaldiversity.ummz.umich.edu/site/resources/phil_myers/classic/monodelphis.jpg/medium.jpg</uri>
 773                                                   </taxonomy>
 774                                                 </clade>
 775                                                 <clade>
 776                                                   <taxonomy>
 777                                                     <scientific_name>Eometatheria</scientific_name>
 778                                                   </taxonomy>
 779                                                   <clade>
 780                                                     <taxonomy>
 781                                                       <id provider="uniprot">9315</id>
 782                                                       <code>MACEU</code>
 783                                                       <scientific_name>Macropus eugenii</scientific_name>
 784                                                       <common_name>Tammar wallaby</common_name>
 785                                                       <rank>species</rank>
 786                                                       <uri>http://upload.wikimedia.org/wikipedia/commons/d/de/Macropus_eugenii.jpg</uri>
 787                                                     </taxonomy>
 788                                                   </clade>
 789                                                   <clade>
 790                                                     <taxonomy>
 791                                                       <id provider="uniprot">9305</id>
 792                                                       <code>SARHA</code>
 793                                                       <scientific_name>Sarcophilus harrisii</scientific_name>
 794                                                       <common_name>Tasmanian devil</common_name>
 795                                                       <synonym>Sarcophilus laniarius</synonym>
 796                                                       <rank>species</rank>
 797                                                       <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/3/3b/Sarcophilus_harrisii_-Healesville_Sanctuary-8a.jpg/727px-Sarcophilus_harrisii_-Healesville_Sanctuary-8a.jpg</uri>
 798                                                     </taxonomy>
 799                                                   </clade>
 800                                                 </clade>
 801                                               </clade>
 802                                             </clade>
 803                                             <clade>
 804                                               <name>ORNAN</name>
 805                                               <taxonomy>
 806                                                 <id provider="uniprot">9258</id>
 807                                                 <code>ORNAN</code>
 808                                                 <scientific_name>Ornithorhynchus anatinus</scientific_name>
 809                                                 <common_name>Duckbill platypus</common_name>
 810                                                 <rank>species</rank>
 811                                                 <uri>http://www.biolib.cz/IMG/GAL/39610.jpg</uri>
 812                                               </taxonomy>
 813                                             </clade>
 814                                           </clade>
 815                                           <clade>
 816                                             <name>Diapsida</name>
 817                                             <clade>
 818                                               <name>Neognathae</name>
 819                                               <taxonomy>
 820                                                 <id provider="uniprot">8825</id>
 821                                                 <scientific_name>Neognathae</scientific_name>
 822                                                 <rank>superorder</rank>
 823                                               </taxonomy>
 824                                               <clade>
 825                                                 <name>Phasianidae &amp; Anatidae (waterfowl)</name>
 826                                                 <clade>
 827                                                   <taxonomy>
 828                                                     <id provider="uniprot">9005</id>
 829                                                     <scientific_name>Phasianidae</scientific_name>
 830                                                     <rank>family</rank>
 831                                                   </taxonomy>
 832                                                   <clade>
 833                                                     <name>CHICK</name>
 834                                                     <taxonomy>
 835                                                       <id provider="uniprot">9031</id>
 836                                                       <code>CHICK</code>
 837                                                       <scientific_name>Gallus gallus</scientific_name>
 838                                                       <common_name>Chicken</common_name>
 839                                                       <synonym>Gallus domesticus</synonym>
 840                                                       <rank>species</rank>
 841                                                       <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/f/f8/Rooster04_adjusted.jpg/800px-Rooster04_adjusted.jpg</uri>
 842                                                     </taxonomy>
 843                                                   </clade>
 844                                                   <clade>
 845                                                     <taxonomy>
 846                                                       <id provider="uniprot">9103</id>
 847                                                       <code>MELGA</code>
 848                                                       <scientific_name>Meleagris gallopavo</scientific_name>
 849                                                       <common_name>Common turkey</common_name>
 850                                                       <rank>species</rank>
 851                                                       <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0205/0858.jpeg</uri>
 852                                                     </taxonomy>
 853                                                   </clade>
 854                                                 </clade>
 855                                                 <clade>
 856                                                   <taxonomy>
 857                                                     <id provider="uniprot">8839</id>
 858                                                     <code>ANAPL</code>
 859                                                     <scientific_name>Anas platyrhynchos</scientific_name>
 860                                                     <common_name>Domestic duck</common_name>
 861                                                     <synonym>Anas boschas</synonym>
 862                                                     <rank>species</rank>
 863                                                     <uri>http://content.ornith.cornell.edu/UEWebApp/images/MPR_070302_100009_L.jpg</uri>
 864                                                   </taxonomy>
 865                                                 </clade>
 866                                               </clade>
 867                                               <clade>
 868                                                 <name>TAEGU</name>
 869                                                 <taxonomy>
 870                                                   <id provider="uniprot">59729</id>
 871                                                   <code>TAEGU</code>
 872                                                   <scientific_name>Taeniopygia guttata</scientific_name>
 873                                                   <common_name>Zebra finch</common_name>
 874                                                   <synonym>Poephila guttata</synonym>
 875                                                   <rank>species</rank>
 876                                                   <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/8/84/Taeniopygia_guttata_-_front_view_-_dundee_wildlife_park.jpg/355px-Taeniopygia_guttata_-_front_view_-_dundee_wildlife_park.jpg</uri>
 877                                                 </taxonomy>
 878                                               </clade>
 879                                             </clade>
 880                                             <clade>
 881                                               <name>ANOCA</name>
 882                                               <taxonomy>
 883                                                 <id provider="eol">795869</id>
 884                                                 <code>ANOCA</code>
 885                                                 <scientific_name>Anolis carolinensis</scientific_name>
 886                                                 <authority>Voigt, 1832</authority>
 887                                                 <common_name>Green anole</common_name>
 888                                                 <synonym>American chameleon</synonym>
 889                                                 <rank>species</rank>
 890                                                 <uri>http://content61.eol.org/content/2009/09/20/01/05528_580_360.jpg</uri>
 891                                                 <uri>http://content61.eol.org/content/2008/10/08/13/66818_580_360.jpg</uri>
 892                                               </taxonomy>
 893                                             </clade>
 894                                           </clade>
 895                                         </clade>
 896                                         <clade>
 897                                           <name>XENTR</name>
 898                                           <taxonomy>
 899                                             <id provider="uniprot">8364</id>
 900                                             <code>XENTR</code>
 901                                             <scientific_name>Xenopus tropicalis</scientific_name>
 902                                             <common_name>Western clawed frog</common_name>
 903                                             <synonym>Silurana tropicalis</synonym>
 904                                             <rank>species</rank>
 905                                             <uri>http://genoweb.univ-rennes1.fr/OGP/xenopus%20tropicalis.jpg</uri>
 906                                           </taxonomy>
 907                                         </clade>
 908                                       </clade>
 909                                       <clade>
 910                                         <name>Teleostei</name>
 911                                         <taxonomy>
 912                                           <id provider="uniprot">32443</id>
 913                                           <scientific_name>Teleostei</scientific_name>
 914                                         </taxonomy>
 915                                         <clade>
 916                                           <taxonomy>
 917                                             <id provider="uniprot">123368</id>
 918                                             <scientific_name>Acanthomorpha</scientific_name>
 919                                           </taxonomy>
 920                                           <clade>
 921                                             <taxonomy>
 922                                               <id provider="uniprot">32485</id>
 923                                               <scientific_name>Percomorpha</scientific_name>
 924                                             </taxonomy>
 925                                             <clade>
 926                                               <name>Smegmamorpha</name>
 927                                               <clade>
 928                                                 <name>GASAC</name>
 929                                                 <taxonomy>
 930                                                   <id provider="uniprot">69293</id>
 931                                                   <code>GASAC</code>
 932                                                   <scientific_name>Gasterosteus aculeatus</scientific_name>
 933                                                   <common_name>Three-spined stickleback</common_name>
 934                                                   <rank>species</rank>
 935                                                   <uri>http://www.fiskbasen.se/images/gasterosteus_aculeatus.jpg</uri>
 936                                                 </taxonomy>
 937                                               </clade>
 938                                               <clade>
 939                                                 <name>ORYLA</name>
 940                                                 <taxonomy>
 941                                                   <id provider="uniprot">8090</id>
 942                                                   <code>ORYLA</code>
 943                                                   <scientific_name>Oryzias latipes</scientific_name>
 944                                                   <common_name>Medaka fish</common_name>
 945                                                   <synonym>Japanese ricefish</synonym>
 946                                                   <rank>species</rank>
 947                                                   <uri>http://upload.wikimedia.org/wikipedia/commons/4/49/Nihonmedaka.jpg</uri>
 948                                                 </taxonomy>
 949                                               </clade>
 950                                             </clade>
 951                                             <clade>
 952                                               <taxonomy>
 953                                                 <id provider="uniprot">31031</id>
 954                                                 <scientific_name>Tetraodontidae</scientific_name>
 955                                                 <common_name>puffers</common_name>
 956                                                 <rank>family</rank>
 957                                               </taxonomy>
 958                                               <clade>
 959                                                 <name>FUGRU</name>
 960                                                 <taxonomy>
 961                                                   <id provider="uniprot">31033</id>
 962                                                   <code>FUGRU</code>
 963                                                   <scientific_name>Takifugu rubripes</scientific_name>
 964                                                   <common_name>Japanese pufferfish</common_name>
 965                                                   <synonym>Fugu rubripes</synonym>
 966                                                   <rank>species</rank>
 967                                                   <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/2/25/Fugu_in_Tank.jpg/800px-Fugu_in_Tank.jpg</uri>
 968                                                 </taxonomy>
 969                                               </clade>
 970                                               <clade>
 971                                                 <name>TETNG</name>
 972                                                 <taxonomy>
 973                                                   <id provider="uniprot">99883</id>
 974                                                   <code>TETNG</code>
 975                                                   <scientific_name>Tetraodon nigroviridis</scientific_name>
 976                                                   <common_name>Green puffer</common_name>
 977                                                   <synonym>Chelonodon nigroviridis</synonym>
 978                                                   <rank>species</rank>
 979                                                   <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/b/b6/Tetraodon_nigroviridis_1.jpg/800px-Tetraodon_nigroviridis_1.jpg</uri>
 980                                                 </taxonomy>
 981                                               </clade>
 982                                             </clade>
 983                                           </clade>
 984                                           <clade>
 985                                             <taxonomy>
 986                                               <id provider="uniprot">8049</id>
 987                                               <code>GADMO</code>
 988                                               <scientific_name>Gadus morhua</scientific_name>
 989                                               <common_name>Atlantic cod</common_name>
 990                                               <rank>species</rank>
 991                                               <uri>http://www.marinbi.com/g-morhua.jpg</uri>
 992                                             </taxonomy>
 993                                           </clade>
 994                                         </clade>
 995                                         <clade>
 996                                           <name>DANRE</name>
 997                                           <taxonomy>
 998                                             <id provider="uniprot">7955</id>
 999                                             <code>DANRE</code>
1000                                             <scientific_name>Danio rerio</scientific_name>
1001                                             <common_name>Zebrafish</common_name>
1002                                             <synonym>Brachydanio rerio</synonym>
1003                                             <rank>species</rank>
1004                                             <uri>http://fishbase.org.cn/images/species/Darer_m0.jpg</uri>
1005                                           </taxonomy>
1006                                         </clade>
1007                                       </clade>
1008                                     </clade>
1009                                     <clade>
1010                                       <taxonomy>
1011                                         <id provider="uniprot">7868</id>
1012                                         <code>CALMI</code>
1013                                         <scientific_name>Callorhynchus milii</scientific_name>
1014                                         <common_name>Australian ghost shark</common_name>
1015                                         <synonym>Australian ghost shark</synonym>
1016                                         <rank>species</rank>
1017                                         <uri>http://www.tudiscovery.com/tiburones/que_es/popup_que/asset/07914907646434433_elephant_shark_380x290.jpg</uri>
1018                                       </taxonomy>
1019                                     </clade>
1020                                   </clade>
1021                                   <clade>
1022                                     <taxonomy>
1023                                       <id provider="uniprot">7757</id>
1024                                       <code>PETMA</code>
1025                                       <scientific_name>Petromyzon marinus</scientific_name>
1026                                       <common_name>Sea lamprey</common_name>
1027                                       <rank>species</rank>
1028                                       <uri>http://www.uk-fish.info/pics/sealampray01.jpg</uri>
1029                                     </taxonomy>
1030                                   </clade>
1031                                 </clade>
1032                                 <clade>
1033                                   <name>Urochordata</name>
1034                                   <taxonomy>
1035                                     <id provider="uniprot">7712</id>
1036                                     <scientific_name>Urochordata</scientific_name>
1037                                     <rank>subphylum</rank>
1038                                   </taxonomy>
1039                                   <clade>
1040                                     <taxonomy>
1041                                       <id provider="uniprot">7718</id>
1042                                       <scientific_name>Ciona</scientific_name>
1043                                       <rank>genus</rank>
1044                                     </taxonomy>
1045                                     <clade>
1046                                       <name>CIOIN</name>
1047                                       <taxonomy>
1048                                         <id provider="uniprot">7719</id>
1049                                         <code>CIOIN</code>
1050                                         <scientific_name>Ciona intestinalis</scientific_name>
1051                                         <common_name>Transparent sea squirt</common_name>
1052                                         <synonym>Ascidia intestinalis</synonym>
1053                                         <rank>species</rank>
1054                                         <uri>http://adl.brs.gov.au/marinepests/images/Ciona_intestinalis2.jpg</uri>
1055                                       </taxonomy>
1056                                     </clade>
1057                                     <clade>
1058                                       <name>CIOSA</name>
1059                                       <taxonomy>
1060                                         <id provider="uniprot">51511</id>
1061                                         <code>CIOSA</code>
1062                                         <scientific_name>Ciona savignyi</scientific_name>
1063                                         <common_name>Pacific transparent sea squirt</common_name>
1064                                         <rank>species</rank>
1065                                         <uri>http://www.pnwscuba.com/invasives/photos/ciona4.jpg</uri>
1066                                       </taxonomy>
1067                                     </clade>
1068                                   </clade>
1069                                   <clade>
1070                                     <name>OIKDI</name>
1071                                     <taxonomy>
1072                                       <id provider="ncbi">34765</id>
1073                                       <code>OIKDI</code>
1074                                       <scientific_name>Oikopleura dioica</scientific_name>
1075                                       <common_name>Tunicate</common_name>
1076                                       <rank>species</rank>
1077                                       <uri>http://jellieszone.com/images/oikopleura.jpg</uri>
1078                                     </taxonomy>
1079                                   </clade>
1080                                 </clade>
1081                               </clade>
1082                               <clade>
1083                                 <name>BRAFL</name>
1084                                 <taxonomy>
1085                                   <id provider="uniprot">7739</id>
1086                                   <code>BRAFL</code>
1087                                   <scientific_name>Branchiostoma floridae</scientific_name>
1088                                   <common_name>Florida lancelet</common_name>
1089                                   <synonym>Amphioxus</synonym>
1090                                   <rank>species</rank>
1091                                   <uri>http://genome.jgi-psf.org/Brafl1/Amphioxus-1.jpg</uri>
1092                                 </taxonomy>
1093                               </clade>
1094                             </clade>
1095                             <clade>
1096                               <name>Hemichordata &amp; Echinodermata</name>
1097                               <clade>
1098                                 <name>STRPU</name>
1099                                 <taxonomy>
1100                                   <id provider="uniprot">7668</id>
1101                                   <code>STRPU</code>
1102                                   <scientific_name>Strongylocentrotus purpuratus</scientific_name>
1103                                   <common_name>Purple sea urchin</common_name>
1104                                   <rank>species</rank>
1105                                   <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/f/f4/Strongylocentrotus_purpuratus_1.jpg/724px-Strongylocentrotus_purpuratus_1.jpg</uri>
1106                                 </taxonomy>
1107                               </clade>
1108                               <clade>
1109                                 <name>SACKO</name>
1110                                 <taxonomy>
1111                                   <id provider="uniprot">10224</id>
1112                                   <code>SACKO</code>
1113                                   <scientific_name>Saccoglossus kowalevskii</scientific_name>
1114                                   <authority>Agassiz, 1873</authority>
1115                                   <common_name>Acorn worm</common_name>
1116                                   <rank>species</rank>
1117                                   <uri>http://www.amnh.org/exhibitions/hall_tour/spectrum/specimens/a158.jpg</uri>
1118                                 </taxonomy>
1119                               </clade>
1120                             </clade>
1121                           </clade>
1122                           <clade>
1123                             <name>Protostomia</name>
1124                             <clade>
1125                               <name>Ecdysozoa</name>
1126                               <clade>
1127                                 <taxonomy>
1128                                   <id provider="uniprot">6656</id>
1129                                   <scientific_name>Arthropoda</scientific_name>
1130                                   <rank>phylum</rank>
1131                                 </taxonomy>
1132                                 <clade>
1133                                   <taxonomy>
1134                                     <id provider="uniprot">197563</id>
1135                                     <scientific_name>Mandibulata</scientific_name>
1136                                   </taxonomy>
1137                                   <clade>
1138                                     <name>Pancrustacea</name>
1139                                     <clade>
1140                                       <taxonomy>
1141                                         <id provider="uniprot">33340</id>
1142                                         <scientific_name>Neoptera</scientific_name>
1143                                         <rank>subclass</rank>
1144                                       </taxonomy>
1145                                       <clade>
1146                                         <taxonomy>
1147                                           <id provider="uniprot">33392</id>
1148                                           <scientific_name>Endopterygota</scientific_name>
1149                                           <rank>infraclass</rank>
1150                                         </taxonomy>
1151                                         <clade>
1152                                           <name>Hymenoptera &amp; Lepidoptera &amp; Diptera</name>
1153                                           <clade>
1154                                             <name>Lepidoptera &amp; Diptera</name>
1155                                             <clade>
1156                                               <taxonomy>
1157                                                 <id provider="uniprot">7147</id>
1158                                                 <scientific_name>Diptera</scientific_name>
1159                                                 <rank>order</rank>
1160                                               </taxonomy>
1161                                               <clade>
1162                                                 <taxonomy>
1163                                                   <id provider="uniprot">7157</id>
1164                                                   <scientific_name>Culicidae</scientific_name>
1165                                                   <common_name>mosquitos</common_name>
1166                                                   <rank>family</rank>
1167                                                 </taxonomy>
1168                                                 <clade>
1169                                                   <name>AEDAE</name>
1170                                                   <taxonomy>
1171                                                     <id provider="uniprot">7159</id>
1172                                                     <code>AEDAE</code>
1173                                                     <scientific_name>Aedes aegypti</scientific_name>
1174                                                     <common_name>Yellowfever mosquito</common_name>
1175                                                     <synonym>Culex aegypti</synonym>
1176                                                     <rank>species</rank>
1177                                                     <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/4/48/Aedes_aegypti_biting_human.jpg/757px-Aedes_aegypti_biting_human.jpg</uri>
1178                                                   </taxonomy>
1179                                                 </clade>
1180                                                 <clade>
1181                                                   <name>ANOGA</name>
1182                                                   <taxonomy>
1183                                                     <id provider="uniprot">7165</id>
1184                                                     <code>ANOGA</code>
1185                                                     <scientific_name>Anopheles gambiae</scientific_name>
1186                                                     <common_name>African malaria mosquito</common_name>
1187                                                     <rank>species</rank>
1188                                                     <uri>http://upload.wikimedia.org/wikipedia/commons/e/e9/Anopheles_gambiae_Mosquito.jpg</uri>
1189                                                   </taxonomy>
1190                                                 </clade>
1191                                                 <clade>
1192                                                   <name>CULPI</name>
1193                                                   <taxonomy>
1194                                                     <id provider="uniprot">7175</id>
1195                                                     <code>CULPI</code>
1196                                                     <scientific_name>Culex pipiens</scientific_name>
1197                                                     <common_name>House mosquito</common_name>
1198                                                     <rank>species</rank>
1199                                                     <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/3/35/Culex_pipiens_2007-1.jpg/628px-Culex_pipiens_2007-1.jpg</uri>
1200                                                   </taxonomy>
1201                                                 </clade>
1202                                               </clade>
1203                                               <clade>
1204                                                 <taxonomy>
1205                                                   <id provider="uniprot">32341</id>
1206                                                   <scientific_name>Sophophora</scientific_name>
1207                                                   <rank>subgenus</rank>
1208                                                 </taxonomy>
1209                                                 <clade>
1210                                                   <name>DROME</name>
1211                                                   <taxonomy>
1212                                                     <id provider="uniprot">7227</id>
1213                                                     <code>DROME</code>
1214                                                     <scientific_name>Drosophila melanogaster</scientific_name>
1215                                                     <common_name>Fruit fly</common_name>
1216                                                     <rank>species</rank>
1217                                                   </taxonomy>
1218                                                 </clade>
1219                                                 <clade>
1220                                                   <name>DROPS</name>
1221                                                   <taxonomy>
1222                                                     <id provider="uniprot">46245</id>
1223                                                     <code>DROPS</code>
1224                                                     <scientific_name>Drosophila pseudoobscura pseudoobscura</scientific_name>
1225                                                     <common_name>Fruit fly</common_name>
1226                                                     <rank>subspecies</rank>
1227                                                   </taxonomy>
1228                                                 </clade>
1229                                               </clade>
1230                                             </clade>
1231                                             <clade>
1232                                               <name>BOMMO</name>
1233                                               <taxonomy>
1234                                                 <id provider="uniprot">7091</id>
1235                                                 <code>BOMMO</code>
1236                                                 <scientific_name>Bombyx mori</scientific_name>
1237                                                 <common_name>Silk moth</common_name>
1238                                                 <rank>species</rank>
1239                                               </taxonomy>
1240                                             </clade>
1241                                           </clade>
1242                                           <clade>
1243                                             <taxonomy>
1244                                               <id provider="uniprot">7400</id>
1245                                               <scientific_name>Apocrita</scientific_name>
1246                                               <common_name>wasps, ants and bees</common_name>
1247                                             </taxonomy>
1248                                             <clade>
1249                                               <name>APIME</name>
1250                                               <taxonomy>
1251                                                 <id provider="uniprot">7460</id>
1252                                                 <code>APIME</code>
1253                                                 <scientific_name>Apis mellifera</scientific_name>
1254                                                 <common_name>Honeybee</common_name>
1255                                                 <rank>species</rank>
1256                                               </taxonomy>
1257                                             </clade>
1258                                             <clade>
1259                                               <name>NASVI</name>
1260                                               <taxonomy>
1261                                                 <id provider="uniprot">7425</id>
1262                                                 <code>NASVI</code>
1263                                                 <scientific_name>Nasonia vitripennis</scientific_name>
1264                                                 <common_name>Parasitic wasp</common_name>
1265                                                 <rank>species</rank>
1266                                               </taxonomy>
1267                                             </clade>
1268                                           </clade>
1269                                         </clade>
1270                                         <clade>
1271                                           <name>TRICA</name>
1272                                           <taxonomy>
1273                                             <id provider="uniprot">7070</id>
1274                                             <code>TRICA</code>
1275                                             <scientific_name>Tribolium castaneum</scientific_name>
1276                                             <common_name>Red flour beetle</common_name>
1277                                             <rank>species</rank>
1278                                           </taxonomy>
1279                                         </clade>
1280                                       </clade>
1281                                       <clade>
1282                                         <taxonomy>
1283                                           <id provider="uniprot">7524</id>
1284                                           <scientific_name>Hemiptera</scientific_name>
1285                                           <rank>order</rank>
1286                                         </taxonomy>
1287                                         <clade>
1288                                           <name>ACYPI</name>
1289                                           <taxonomy>
1290                                             <id provider="uniprot">7029</id>
1291                                             <code>ACYPI</code>
1292                                             <scientific_name>Acyrthosiphon pisum</scientific_name>
1293                                             <common_name>Pea aphid</common_name>
1294                                             <rank>species</rank>
1295                                           </taxonomy>
1296                                         </clade>
1297                                         <clade>
1298                                           <name>RHOPR</name>
1299                                           <taxonomy>
1300                                             <id provider="uniprot">13249</id>
1301                                             <code>RHOPR</code>
1302                                             <scientific_name>Rhodnius prolixus</scientific_name>
1303                                             <common_name>Triatomid bug</common_name>
1304                                             <rank>species</rank>
1305                                             <uri>http://upload.wikimedia.org/wikipedia/commons/b/b9/Rhodnius_prolixus.jpg</uri>
1306                                           </taxonomy>
1307                                         </clade>
1308                                       </clade>
1309                                     </clade>
1310                                     <clade>
1311                                       <taxonomy>
1312                                         <id provider="uniprot">6658</id>
1313                                         <scientific_name>Branchiopoda</scientific_name>
1314                                         <rank>class</rank>
1315                                       </taxonomy>
1316                                       <clade>
1317                                         <name>DAPPU</name>
1318                                         <taxonomy>
1319                                           <id provider="uniprot">6669</id>
1320                                           <code>DAPPU</code>
1321                                           <scientific_name>Daphnia pulex</scientific_name>
1322                                           <common_name>Water flea</common_name>
1323                                           <rank>species</rank>
1324                                           <uri>http://www.microscopy-uk.org.uk/mag/imgjun99/daphni.jpg</uri>
1325                                         </taxonomy>
1326                                       </clade>
1327                                       <clade>
1328                                         <taxonomy>
1329                                           <id provider="uniprot">6661</id>
1330                                           <code>ARTSF</code>
1331                                           <scientific_name>Artemia franciscana</scientific_name>
1332                                           <common_name>Brine shrimp</common_name>
1333                                           <synonym>Artemia sanfranciscana</synonym>
1334                                           <rank>species</rank>
1335                                           <uri>http://www.alireza-asem.ir/images/Artemia.jpg</uri>
1336                                         </taxonomy>
1337                                       </clade>
1338                                     </clade>
1339                                   </clade>
1340                                   <clade>
1341                                     <taxonomy>
1342                                       <id provider="uniprot">61985</id>
1343                                       <scientific_name>Myriapoda</scientific_name>
1344                                       <rank>subphylum</rank>
1345                                     </taxonomy>
1346                                     <clade>
1347                                       <taxonomy>
1348                                         <id provider="uniprot">7540</id>
1349                                         <scientific_name>Chilopoda</scientific_name>
1350                                         <common_name>centipedes</common_name>
1351                                         <rank>class</rank>
1352                                       </taxonomy>
1353                                       <clade>
1354                                         <taxonomy>
1355                                           <id provider="uniprot">126957</id>
1356                                           <scientific_name>Strigamia maritima</scientific_name>
1357                                           <rank>species</rank>
1358                                           <uri>http://images.marinespecies.org/resized/22703_strigamia-maritima-male-loch-linnhe-scotland.jpg</uri>
1359                                         </taxonomy>
1360                                       </clade>
1361                                       <clade>
1362                                         <taxonomy>
1363                                           <id provider="uniprot">29022</id>
1364                                           <code>SCUCO</code>
1365                                           <scientific_name>Scutigera coleoptrata</scientific_name>
1366                                           <common_name>House centipede</common_name>
1367                                           <rank>species</rank>
1368                                           <uri>http://upload.wikimedia.org/wikipedia/commons/1/14/Scutigera_coleoptrata.JPG</uri>
1369                                         </taxonomy>
1370                                       </clade>
1371                                     </clade>
1372                                     <clade>
1373                                       <taxonomy>
1374                                         <id provider="uniprot">7553</id>
1375                                         <scientific_name>Diplopoda</scientific_name>
1376                                         <common_name>millipedes</common_name>
1377                                         <rank>class</rank>
1378                                       </taxonomy>
1379                                       <clade>
1380                                         <taxonomy>
1381                                           <id provider="uniprot">118561</id>
1382                                           <scientific_name>Helminthomorpha</scientific_name>
1383                                           <rank>subclass</rank>
1384                                         </taxonomy>
1385                                         <clade>
1386                                           <taxonomy>
1387                                             <id provider="uniprot">174156</id>
1388                                             <code>NARAN</code>
1389                                             <scientific_name>Narceus annularis</scientific_name>
1390                                             <common_name>Millipede</common_name>
1391                                             <rank>species</rank>
1392                                             <uri>http://i.pbase.com/g4/59/68959/2/59864073.narceus0705062large.jpg</uri>
1393                                           </taxonomy>
1394                                         </clade>
1395                                         <clade>
1396                                           <taxonomy>
1397                                             <id provider="uniprot">364406</id>
1398                                             <scientific_name>Antrokoreana gracilipes</scientific_name>
1399                                             <rank>species</rank>
1400                                             <uri>http://www.gwbaekdu.com/data/2d/%EA%B3%A1%EC%84%9D%EA%B5%B4_4(%EB%93%B1%EC%A4%84%EA%B5%B4%EB%85%B8%EB%9E%98%EA%B8%B0).jpg</uri>
1401                                           </taxonomy>
1402                                         </clade>
1403                                       </clade>
1404                                       <clade>
1405                                         <taxonomy>
1406                                           <id provider="uniprot">52428</id>
1407                                           <scientific_name>Polyxenus lagurus</scientific_name>
1408                                           <common_name>bristly millipede</common_name>
1409                                           <rank>species</rank>
1410                                           <uri>http://upload.wikimedia.org/wikipedia/commons/5/54/Polyxenus.lagurus.1.jpg</uri>
1411                                         </taxonomy>
1412                                       </clade>
1413                                     </clade>
1414                                   </clade>
1415                                 </clade>
1416                                 <clade>
1417                                   <name>IXOSC</name>
1418                                   <taxonomy>
1419                                     <id provider="uniprot">6945</id>
1420                                     <code>IXOSC</code>
1421                                     <scientific_name>Ixodes scapularis</scientific_name>
1422                                     <common_name>Black-legged tick</common_name>
1423                                     <synonym>Deer tick</synonym>
1424                                     <rank>species</rank>
1425                                     <uri>http://upload.wikimedia.org/wikipedia/commons/8/8c/Deertick.jpg</uri>
1426                                   </taxonomy>
1427                                 </clade>
1428                               </clade>
1429                               <clade>
1430                                 <taxonomy>
1431                                   <id provider="uniprot">119089</id>
1432                                   <scientific_name>Chromadorea</scientific_name>
1433                                   <rank>class</rank>
1434                                 </taxonomy>
1435                                 <reference doi="10.1038/32160">
1436                                 </reference>
1437                                 <clade>
1438                                   <name>nematode Clade V</name>
1439                                   <clade>
1440                                     <name>Caenorhabditis</name>
1441                                     <taxonomy>
1442                                       <id provider="uniprot">6237</id>
1443                                       <scientific_name>Caenorhabditis</scientific_name>
1444                                       <rank>genus</rank>
1445                                     </taxonomy>
1446                                     <clade>
1447                                       <name>CAEEL</name>
1448                                       <taxonomy>
1449                                         <id provider="uniprot">6239</id>
1450                                         <code>CAEEL</code>
1451                                         <scientific_name>Caenorhabditis elegans</scientific_name>
1452                                         <rank>species</rank>
1453                                       </taxonomy>
1454                                     </clade>
1455                                     <clade>
1456                                       <name>CAEBR</name>
1457                                       <taxonomy>
1458                                         <id provider="uniprot">6238</id>
1459                                         <code>CAEBR</code>
1460                                         <scientific_name>Caenorhabditis briggsae</scientific_name>
1461                                         <rank>species</rank>
1462                                       </taxonomy>
1463                                     </clade>
1464                                   </clade>
1465                                   <clade>
1466                                     <name>PRIPA</name>
1467                                     <taxonomy>
1468                                       <id provider="uniprot">54126</id>
1469                                       <code>PRIPA</code>
1470                                       <scientific_name>Pristionchus pacificus</scientific_name>
1471                                       <rank>species</rank>
1472                                     </taxonomy>
1473                                   </clade>
1474                                 </clade>
1475                                 <clade>
1476                                   <name>BRUMA</name>
1477                                   <taxonomy>
1478                                     <id provider="uniprot">6279</id>
1479                                     <code>BRUMA</code>
1480                                     <scientific_name>Brugia malayi</scientific_name>
1481                                     <common_name>Filarial nematode worm</common_name>
1482                                     <rank>species</rank>
1483                                   </taxonomy>
1484                                 </clade>
1485                               </clade>
1486                             </clade>
1487                             <clade>
1488                               <name>Lophotrochozoa</name>
1489                               <clade>
1490                                 <name>Annelida &amp; Mollusca</name>
1491                                 <clade>
1492                                   <taxonomy>
1493                                     <id provider="uniprot">6340</id>
1494                                     <scientific_name>Annelida</scientific_name>
1495                                     <rank>phylum</rank>
1496                                   </taxonomy>
1497                                   <clade>
1498                                     <name>CAP</name>
1499                                     <taxonomy>
1500                                       <id provider="uniprot">283909</id>
1501                                       <scientific_name>Capitella teleta</scientific_name>
1502                                       <rank>species</rank>
1503                                     </taxonomy>
1504                                   </clade>
1505                                   <clade>
1506                                     <name>HELRO</name>
1507                                     <taxonomy>
1508                                       <id provider="uniprot">6412</id>
1509                                       <code>HELRO</code>
1510                                       <scientific_name>Helobdella robusta</scientific_name>
1511                                       <common_name>Californian leech</common_name>
1512                                       <rank>species</rank>
1513                                     </taxonomy>
1514                                   </clade>
1515                                 </clade>
1516                                 <clade>
1517                                   <name>LOTGI</name>
1518                                   <taxonomy>
1519                                     <id provider="uniprot">225164</id>
1520                                     <code>LOTGI</code>
1521                                     <scientific_name>Lottia gigantea</scientific_name>
1522                                     <common_name>Owl limpet</common_name>
1523                                     <rank>species</rank>
1524                                   </taxonomy>
1525                                 </clade>
1526                               </clade>
1527                               <clade>
1528                                 <taxonomy>
1529                                   <id provider="uniprot">6157</id>
1530                                   <scientific_name>Platyhelminthes</scientific_name>
1531                                   <rank>phylum</rank>
1532                                 </taxonomy>
1533                                 <clade>
1534                                   <name>SCHMA</name>
1535                                   <taxonomy>
1536                                     <id provider="uniprot">6183</id>
1537                                     <code>SCHMA</code>
1538                                     <scientific_name>Schistosoma mansoni</scientific_name>
1539                                     <common_name>Blood fluke</common_name>
1540                                     <rank>species</rank>
1541                                   </taxonomy>
1542                                 </clade>
1543                                 <clade>
1544                                   <name>SCHMD</name>
1545                                   <taxonomy>
1546                                     <id provider="uniprot">79327</id>
1547                                     <code>SCHMD</code>
1548                                     <scientific_name>Schmidtea mediterranea</scientific_name>
1549                                     <common_name>Freshwater planarian flatworm</common_name>
1550                                     <rank>species</rank>
1551                                   </taxonomy>
1552                                 </clade>
1553                               </clade>
1554                             </clade>
1555                           </clade>
1556                         </clade>
1557                         <clade>
1558                           <name>Cnidaria</name>
1559                           <taxonomy>
1560                             <id provider="uniprot">6073</id>
1561                             <scientific_name>Cnidaria</scientific_name>
1562                             <rank>phylum</rank>
1563                           </taxonomy>
1564                           <clade>
1565                             <name>NEMVE</name>
1566                             <taxonomy>
1567                               <id provider="uniprot">45351</id>
1568                               <code>NEMVE</code>
1569                               <scientific_name>Nematostella vectensis</scientific_name>
1570                               <common_name>Starlet sea anemone</common_name>
1571                               <rank>species</rank>
1572                             </taxonomy>
1573                           </clade>
1574                           <clade>
1575                             <name>HYDMA</name>
1576                             <taxonomy>
1577                               <id provider="eol">9119928</id>
1578                               <code>HYDMA</code>
1579                               <scientific_name>Hydra magnipapillata</scientific_name>
1580                               <authority>Ito, 1947</authority>
1581                               <rank>species</rank>
1582                               <uri>http://www.nig.ac.jp/labs/OntoGen/magni.html</uri>
1583                             </taxonomy>
1584                           </clade>
1585                         </clade>
1586                       </clade>
1587                       <clade>
1588                         <name>TRIAD</name>
1589                         <taxonomy>
1590                           <id provider="uniprot">10228</id>
1591                           <code>TRIAD</code>
1592                           <scientific_name>Trichoplax adhaerens</scientific_name>
1593                           <synonym>Trichoplax reptans</synonym>
1594                           <rank>species</rank>
1595                         </taxonomy>
1596                         <reference doi="10.1073/pnas.0602076103">
1597                         </reference>
1598                       </clade>
1599                     </clade>
1600                     <clade>
1601                       <name>AMPQU</name>
1602                       <taxonomy>
1603                         <id provider="uniprot">400682</id>
1604                         <code>AMPQU</code>
1605                         <scientific_name>Amphimedon queenslandica</scientific_name>
1606                         <rank>species</rank>
1607                       </taxonomy>
1608                     </clade>
1609                   </clade>
1610                   <clade>
1611                     <taxonomy>
1612                       <id provider="uniprot">81524</id>
1613                       <scientific_name>Codonosigidae</scientific_name>
1614                       <rank>family</rank>
1615                     </taxonomy>
1616                     <clade>
1617                       <name>MONBE</name>
1618                       <taxonomy>
1619                         <id provider="uniprot">81824</id>
1620                         <code>MONBE</code>
1621                         <scientific_name>Monosiga brevicollis</scientific_name>
1622                         <common_name>Choanoflagellate</common_name>
1623                         <rank>species</rank>
1624                       </taxonomy>
1625                     </clade>
1626                     <clade>
1627                       <taxonomy>
1628                         <id provider="uniprot">946362</id>
1629                         <code>SALS5</code>
1630                         <scientific_name>Salpingoeca rosetta</scientific_name>
1631                         <synonym>Proterospongia sp. ATCC 50818</synonym>
1632                         <synonym>Salpingoeca sp. ATCC 50818</synonym>
1633                         <rank>species</rank>
1634                       </taxonomy>
1635                     </clade>
1636                   </clade>
1637                 </clade>
1638                 <clade>
1639                   <name>Ichthyophonida &amp; Filasterea</name>
1640                   <clade>
1641                     <taxonomy>
1642                       <id provider="uniprot">198625</id>
1643                       <scientific_name>Ichthyophonida</scientific_name>
1644                       <rank>order</rank>
1645                     </taxonomy>
1646                     <clade>
1647                       <taxonomy>
1648                         <id provider="uniprot">4881</id>
1649                         <code>AMOPA</code>
1650                         <scientific_name>Amoebidium parasiticum</scientific_name>
1651                         <rank>species</rank>
1652                         <uri>http://www.diark.org/img/species_pict/Amoebidium_parasiticum</uri>
1653                       </taxonomy>
1654                     </clade>
1655                     <clade>
1656                       <name>SPHARC</name>
1657                       <taxonomy>
1658                         <id provider="uniprot">72019</id>
1659                         <scientific_name>Sphaeroforma arctica</scientific_name>
1660                         <rank>species</rank>
1661                         <uri>http://www.sciencedirect.com/cache/MiamiImageURL/1-s2.0-S0168952507000236-gr2.jpg</uri>
1662                       </taxonomy>
1663                     </clade>
1664                   </clade>
1665                   <clade>
1666                     <taxonomy>
1667                       <scientific_name>Filasterea</scientific_name>
1668                     </taxonomy>
1669                     <reference doi="10.1371/journal.pone.0002098">
1670                     </reference>
1671                     <reference>
1672                     </reference>
1673                     <clade>
1674                       <name>MINVIB</name>
1675                       <taxonomy>
1676                         <id provider="uniprot">134558</id>
1677                         <scientific_name>Ministeria vibrans</scientific_name>
1678                         <rank>species</rank>
1679                       </taxonomy>
1680                     </clade>
1681                     <clade>
1682                       <name>CAPOWC</name>
1683                       <taxonomy>
1684                         <id provider="uniprot">192875</id>
1685                         <scientific_name>Capsaspora owczarzaki</scientific_name>
1686                         <rank>species</rank>
1687                       </taxonomy>
1688                     </clade>
1689                   </clade>
1690                 </clade>
1691               </clade>
1692               <clade>
1693                 <taxonomy>
1694                   <scientific_name>Holomycota</scientific_name>
1695                   <synonym>Nucletmycea</synonym>
1696                 </taxonomy>
1697                 <clade>
1698                   <taxonomy>
1699                     <id provider="uniprot">4751</id>
1700                     <scientific_name>Fungi</scientific_name>
1701                     <rank>kingdom</rank>
1702                   </taxonomy>
1703                   <clade>
1704                     <name>Dikarya &amp; Mucoromycotina &amp; Kickxellomycotina &amp; Blastocladiomycota &amp; Chytridiomycota</name>
1705                     <clade>
1706                       <name>Dikarya &amp; Mucoromycotina &amp; Kickxellomycotina &amp; Blastocladiomycota</name>
1707                       <clade>
1708                         <name>Dikarya &amp; Mucoromycotina &amp; Kickxellomycotina</name>
1709                         <clade>
1710                           <name>Dikarya &amp; Mucoromycotina</name>
1711                           <clade>
1712                             <taxonomy>
1713                               <id provider="uniprot">451864</id>
1714                               <scientific_name>Dikarya</scientific_name>
1715                               <rank>subkingdom</rank>
1716                             </taxonomy>
1717                             <reference doi="10.1038/nature05110">
1718                             </reference>
1719                             <reference>
1720                             </reference>
1721                             <clade>
1722                               <taxonomy>
1723                                 <id provider="uniprot">4890</id>
1724                                 <scientific_name>Ascomycota</scientific_name>
1725                                 <rank>phylum</rank>
1726                               </taxonomy>
1727                               <clade>
1728                                 <name>Pezizomycotina_Saccharomycetales</name>
1729                                 <clade>
1730                                   <taxonomy>
1731                                     <id provider="uniprot">147538</id>
1732                                     <scientific_name>Pezizomycotina</scientific_name>
1733                                     <synonym>Euascomycota</synonym>
1734                                     <rank>subphylum</rank>
1735                                   </taxonomy>
1736                                   <reference doi="0.3852/mycologia.98.6.1018">
1737                                     <desc>A five-gene phylogeny of Pezizomycotina</desc>
1738                                   </reference>
1739                                   <reference>
1740                                   </reference>
1741                                   <clade>
1742                                     <taxonomy>
1743                                       <id provider="uniprot">716546</id>
1744                                       <scientific_name>Leotiomyceta</scientific_name>
1745                                     </taxonomy>
1746                                     <clade>
1747                                       <name>Sordariomyceta &amp; Dothideomycetes &amp; Trichocomaceae &amp; Lecanoromycetes</name>
1748                                       <clade>
1749                                         <name>Sordariomyceta &amp; Dothideomycetes &amp; Lecanoromycetes</name>
1750                                         <clade>
1751                                           <taxonomy>
1752                                             <id provider="uniprot">147541</id>
1753                                             <scientific_name>Dothideomycetes</scientific_name>
1754                                             <rank>class</rank>
1755                                           </taxonomy>
1756                                           <reference doi="10.3114/sim.2009.64.01">
1757                                             <desc>A class-wide phylogenetic assessment of Dothideomycetes</desc>
1758                                           </reference>
1759                                           <clade>
1760                                             <taxonomy>
1761                                               <id provider="uniprot">134362</id>
1762                                               <scientific_name>Capnodiales</scientific_name>
1763                                               <rank>order</rank>
1764                                             </taxonomy>
1765                                             <clade>
1766                                               <taxonomy>
1767                                                 <id provider="uniprot">41254</id>
1768                                                 <scientific_name>Mycosphaerella</scientific_name>
1769                                                 <rank>genus</rank>
1770                                               </taxonomy>
1771                                               <clade>
1772                                                 <name>MYCFI</name>
1773                                                 <taxonomy>
1774                                                   <id provider="uniprot">83344</id>
1775                                                   <scientific_name>Mycosphaerella fijiensis</scientific_name>
1776                                                   <rank>species</rank>
1777                                                 </taxonomy>
1778                                               </clade>
1779                                               <clade>
1780                                                 <name>MYCGR</name>
1781                                                 <taxonomy>
1782                                                   <id provider="uniprot">54734</id>
1783                                                   <code>MYCGR</code>
1784                                                   <scientific_name>Mycosphaerella graminicola</scientific_name>
1785                                                   <common_name>Speckled leaf blotch fungus</common_name>
1786                                                   <synonym>Septoria tritici</synonym>
1787                                                   <rank>species</rank>
1788                                                 </taxonomy>
1789                                               </clade>
1790                                               <clade>
1791                                                 <name>MYCPOP</name>
1792                                                 <taxonomy>
1793                                                   <id provider="uniprot">85929</id>
1794                                                   <scientific_name>Mycosphaerella populorum</scientific_name>
1795                                                   <synonym>Septoria musiva</synonym>
1796                                                   <rank>species</rank>
1797                                                 </taxonomy>
1798                                               </clade>
1799                                               <clade>
1800                                                 <name>MYCPJ</name>
1801                                                 <taxonomy>
1802                                                   <id provider="uniprot">64363</id>
1803                                                   <code>MYCPJ</code>
1804                                                   <scientific_name>Mycosphaerella pini</scientific_name>
1805                                                   <common_name>Red band needle blight disease fungus</common_name>
1806                                                   <synonym>Dothistroma septosporum</synonym>
1807                                                   <synonym>Dothistroma pini</synonym>
1808                                                   <rank>species</rank>
1809                                                 </taxonomy>
1810                                               </clade>
1811                                             </clade>
1812                                             <clade>
1813                                               <taxonomy>
1814                                                 <id provider="uniprot">430998</id>
1815                                                 <code>BAUCOM</code>
1816                                                 <scientific_name>Baudoinia compniacensis</scientific_name>
1817                                                 <rank>species</rank>
1818                                                 <uri>http://www.diark.org/img/species_pict/Baudoinia_compniacensis</uri>
1819                                               </taxonomy>
1820                                             </clade>
1821                                           </clade>
1822                                           <clade>
1823                                             <taxonomy>
1824                                               <id provider="uniprot">715340</id>
1825                                               <scientific_name>Pleosporineae</scientific_name>
1826                                               <rank>suborder</rank>
1827                                             </taxonomy>
1828                                             <clade>
1829                                               <taxonomy>
1830                                                 <id provider="uniprot">28556</id>
1831                                                 <scientific_name>Pleosporaceae</scientific_name>
1832                                                 <rank>family</rank>
1833                                               </taxonomy>
1834                                               <clade>
1835                                                 <name>Cochliobolus &amp; Setosphaeria</name>
1836                                                 <clade>
1837                                                   <taxonomy>
1838                                                     <id provider="uniprot">5015</id>
1839                                                     <scientific_name>Cochliobolus</scientific_name>
1840                                                     <rank>genus</rank>
1841                                                   </taxonomy>
1842                                                   <clade>
1843                                                     <name>COCHE</name>
1844                                                     <taxonomy>
1845                                                       <id provider="uniprot">5016</id>
1846                                                       <code>COCHE</code>
1847                                                       <scientific_name>Cochliobolus heterostrophus</scientific_name>
1848                                                       <synonym>Drechslera maydis</synonym>
1849                                                       <rank>species</rank>
1850                                                     </taxonomy>
1851                                                   </clade>
1852                                                   <clade>
1853                                                     <taxonomy>
1854                                                       <id provider="uniprot">45130</id>
1855                                                       <code>COCSA</code>
1856                                                       <scientific_name>Cochliobolus sativus</scientific_name>
1857                                                       <synonym>Bipolaris sorokiniana</synonym>
1858                                                       <rank>species</rank>
1859                                                       <uri>http://www.plantmanagementnetwork.org/pub/php/diagnosticguide/2003/rootrot/image/mathre6sm.jpg</uri>
1860                                                     </taxonomy>
1861                                                   </clade>
1862                                                 </clade>
1863                                                 <clade>
1864                                                   <taxonomy>
1865                                                     <id provider="uniprot">93612</id>
1866                                                     <code>SETTU</code>
1867                                                     <scientific_name>Setosphaeria turcica</scientific_name>
1868                                                     <authority>(Luttr.) K.J. Leonard &amp; Suggs, (1974)</authority>
1869                                                     <common_name>Northern corn leaf blight disease fungus</common_name>
1870                                                     <synonym>Exserohilum turcicum</synonym>
1871                                                     <synonym>Helminthosporium turcicum</synonym>
1872                                                     <rank>species</rank>
1873                                                     <uri>http://www.pflanzenkrankheiten.ch/diseases/STU/figures_STU/HTU_Mais_Mik_7_k.jpg</uri>
1874                                                     <uri>http://www.pflanzenkrankheiten.ch/diseases/STU/figures_STU/Exserohilum_turcicum_001_k.jpg</uri>
1875                                                   </taxonomy>
1876                                                 </clade>
1877                                               </clade>
1878                                               <clade>
1879                                                 <name>PYRTR</name>
1880                                                 <taxonomy>
1881                                                   <id provider="uniprot">426418</id>
1882                                                   <code>PYRTR</code>
1883                                                   <scientific_name>Pyrenophora tritici-repentis (strain Pt-1C-BFP)</scientific_name>
1884                                                   <common_name>Wheat tan spot fungus</common_name>
1885                                                   <synonym>Drechslera tritici-repentis</synonym>
1886                                                 </taxonomy>
1887                                               </clade>
1888                                             </clade>
1889                                             <clade>
1890                                               <name>PHANO</name>
1891                                               <taxonomy>
1892                                                 <id provider="uniprot">13684</id>
1893                                                 <code>PHANO</code>
1894                                                 <scientific_name>Phaeosphaeria nodorum</scientific_name>
1895                                                 <common_name>Glume blotch fungus</common_name>
1896                                                 <synonym>Septoria nodorum</synonym>
1897                                                 <rank>species</rank>
1898                                               </taxonomy>
1899                                             </clade>
1900                                           </clade>
1901                                         </clade>
1902                                         <clade>
1903                                           <name>Sordariomyceta &amp; Lecanoromycetes</name>
1904                                           <clade>
1905                                             <taxonomy>
1906                                               <id provider="uniprot">715989</id>
1907                                               <scientific_name>Sordariomyceta</scientific_name>
1908                                             </taxonomy>
1909                                             <clade>
1910                                               <taxonomy>
1911                                                 <id provider="uniprot">147550</id>
1912                                                 <scientific_name>Sordariomycetes</scientific_name>
1913                                                 <rank>class</rank>
1914                                               </taxonomy>
1915                                               <clade>
1916                                                 <name>Magnaporthales &amp; Hypocreales</name>
1917                                                 <clade>
1918                                                   <taxonomy>
1919                                                     <id provider="uniprot">5125</id>
1920                                                     <scientific_name>Hypocreales</scientific_name>
1921                                                     <rank>order</rank>
1922                                                   </taxonomy>
1923                                                   <clade>
1924                                                     <name>TRIVE</name>
1925                                                     <taxonomy>
1926                                                       <id provider="uniprot">29875</id>
1927                                                       <code>TRIVE</code>
1928                                                       <scientific_name>Trichoderma virens</scientific_name>
1929                                                       <common_name>Gliocladium virens</common_name>
1930                                                       <synonym>Trichoderma virens</synonym>
1931                                                       <rank>species</rank>
1932                                                     </taxonomy>
1933                                                   </clade>
1934                                                   <clade>
1935                                                     <name>GIBZE</name>
1936                                                     <taxonomy>
1937                                                       <id provider="uniprot">5518</id>
1938                                                       <code>GIBZE</code>
1939                                                       <scientific_name>Gibberella zeae</scientific_name>
1940                                                       <common_name>Wheat head blight fungus</common_name>
1941                                                       <synonym>Fusarium graminearum</synonym>
1942                                                       <rank>species</rank>
1943                                                     </taxonomy>
1944                                                   </clade>
1945                                                   <clade>
1946                                                     <name>ACRALC</name>
1947                                                     <taxonomy>
1948                                                       <id provider="uniprot">398408</id>
1949                                                       <scientific_name>Acremonium alcalophilum</scientific_name>
1950                                                       <rank>species</rank>
1951                                                       <uri>http://genome.jgi-psf.org/public/Acral1_c3a/Acral1.jpg</uri>
1952                                                     </taxonomy>
1953                                                   </clade>
1954                                                 </clade>
1955                                                 <clade>
1956                                                   <name>MAGGR</name>
1957                                                   <taxonomy>
1958                                                     <id provider="uniprot">148305</id>
1959                                                     <code>MAGGR</code>
1960                                                     <scientific_name>Magnaporthe grisea</scientific_name>
1961                                                     <common_name>Rice blast fungus</common_name>
1962                                                     <synonym>Pyricularia grisea</synonym>
1963                                                     <rank>species</rank>
1964                                                   </taxonomy>
1965                                                 </clade>
1966                                               </clade>
1967                                               <clade>
1968                                                 <taxonomy>
1969                                                   <id provider="uniprot">5139</id>
1970                                                   <scientific_name>Sordariales</scientific_name>
1971                                                   <rank>order</rank>
1972                                                 </taxonomy>
1973                                                 <clade>
1974                                                   <taxonomy>
1975                                                     <id provider="uniprot">35718</id>
1976                                                     <scientific_name>Chaetomiaceae</scientific_name>
1977                                                     <rank>family</rank>
1978                                                   </taxonomy>
1979                                                   <clade>
1980                                                     <taxonomy>
1981                                                       <id provider="uniprot">35719</id>
1982                                                       <scientific_name>Thielavia</scientific_name>
1983                                                       <rank>genus</rank>
1984                                                     </taxonomy>
1985                                                     <clade>
1986                                                       <name>THITER</name>
1987                                                       <taxonomy>
1988                                                         <id provider="eol">193532</id>
1989                                                         <scientific_name>Thielavia terrestris</scientific_name>
1990                                                         <authority>Malloch &amp; Cain 1972</authority>
1991                                                         <synonym>Acremonium alabamense</synonym>
1992                                                         <rank>species</rank>
1993                                                         <uri>http://genome.jgi-psf.org/public/Thite2/Thite1.jpg</uri>
1994                                                       </taxonomy>
1995                                                     </clade>
1996                                                     <clade>
1997                                                       <name>MYCTHE</name>
1998                                                       <taxonomy>
1999                                                         <id provider="uniprot">573728</id>
2000                                                         <scientific_name>Myceliophthora thermophila</scientific_name>
2001                                                         <authority>(Apinis) Oorschot 1977</authority>
2002                                                         <synonym>Sporotrichum thermophilum</synonym>
2003                                                         <synonym>anamorph of Thielavia heterothallica</synonym>
2004                                                         <rank>species</rank>
2005                                                         <uri>http://genome.jgi-psf.org/public/Spoth2/Spoth0.jpg</uri>
2006                                                       </taxonomy>
2007                                                     </clade>
2008                                                   </clade>
2009                                                   <clade>
2010                                                     <name>CHAGB</name>
2011                                                     <taxonomy>
2012                                                       <id provider="eol">1029505</id>
2013                                                       <code>CHAGB</code>
2014                                                       <scientific_name>Chaetomium globosum</scientific_name>
2015                                                       <authority>Kunze 1817</authority>
2016                                                       <common_name>Soil fungus</common_name>
2017                                                       <rank>species</rank>
2018                                                     </taxonomy>
2019                                                   </clade>
2020                                                 </clade>
2021                                                 <clade>
2022                                                   <name>NEUCR</name>
2023                                                   <taxonomy>
2024                                                     <id provider="uniprot">5141</id>
2025                                                     <code>NEUCR</code>
2026                                                     <scientific_name>Neurospora crassa</scientific_name>
2027                                                     <rank>species</rank>
2028                                                   </taxonomy>
2029                                                 </clade>
2030                                               </clade>
2031                                             </clade>
2032                                             <clade>
2033                                               <taxonomy>
2034                                                 <id provider="uniprot">147548</id>
2035                                                 <scientific_name>Leotiomycetes</scientific_name>
2036                                                 <rank>class</rank>
2037                                               </taxonomy>
2038                                               <clade>
2039                                                 <taxonomy>
2040                                                   <id provider="uniprot">28983</id>
2041                                                   <scientific_name>Sclerotiniaceae</scientific_name>
2042                                                   <rank>family</rank>
2043                                                 </taxonomy>
2044                                                 <clade>
2045                                                   <taxonomy>
2046                                                     <id provider="uniprot">40559</id>
2047                                                     <code>BOTFU</code>
2048                                                     <scientific_name>Botryotinia fuckeliana</scientific_name>
2049                                                     <common_name>Noble rot fungus</common_name>
2050                                                     <synonym>Botrytis cinerea</synonym>
2051                                                     <rank>species</rank>
2052                                                   </taxonomy>
2053                                                 </clade>
2054                                                 <clade>
2055                                                   <taxonomy>
2056                                                     <id provider="uniprot">5180</id>
2057                                                     <code>SCLSC</code>
2058                                                     <scientific_name>Sclerotinia sclerotiorum</scientific_name>
2059                                                     <common_name>White mold</common_name>
2060                                                     <synonym>Whetzelinia sclerotiorum</synonym>
2061                                                     <rank>species</rank>
2062                                                   </taxonomy>
2063                                                 </clade>
2064                                               </clade>
2065                                               <clade>
2066                                                 <name>OIDMAI</name>
2067                                                 <taxonomy>
2068                                                   <id provider="uniprot">78148</id>
2069                                                   <scientific_name>Oidiodendron maius</scientific_name>
2070                                                   <rank>species</rank>
2071                                                 </taxonomy>
2072                                               </clade>
2073                                             </clade>
2074                                           </clade>
2075                                           <clade>
2076                                             <taxonomy>
2077                                               <id provider="uniprot">388435</id>
2078                                               <scientific_name>Lecanoromycetidae</scientific_name>
2079                                               <rank>subclass</rank>
2080                                             </taxonomy>
2081                                             <clade>
2082                                               <name>CLAGRA</name>
2083                                               <taxonomy>
2084                                                 <id provider="uniprot">27339</id>
2085                                                 <scientific_name>Cladonia grayi</scientific_name>
2086                                                 <synonym>Cladonia grayi Merr</synonym>
2087                                                 <rank>species</rank>
2088                                                 <uri>http://upload.wikimedia.org/wikipedia/commons/b/b6/Cladonia_grayi-11.jpg</uri>
2089                                               </taxonomy>
2090                                             </clade>
2091                                             <clade>
2092                                               <name>XANPAR</name>
2093                                               <taxonomy>
2094                                                 <id provider="uniprot">107463</id>
2095                                                 <scientific_name>Xanthoria parietina</scientific_name>
2096                                                 <rank>species</rank>
2097                                                 <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/7/70/Xanthoria_parietina_%2806_03_31%29.jpg/800px-Xanthoria_parietina_%2806_03_31%29.jpg</uri>
2098                                               </taxonomy>
2099                                             </clade>
2100                                           </clade>
2101                                         </clade>
2102                                       </clade>
2103                                       <clade>
2104                                         <taxonomy>
2105                                           <id provider="uniprot">28568</id>
2106                                           <scientific_name>Trichocomaceae</scientific_name>
2107                                           <rank>family</rank>
2108                                         </taxonomy>
2109                                         <clade>
2110                                           <name>Neosartorya_Emericella</name>
2111                                           <clade>
2112                                             <name>NEOFI</name>
2113                                             <taxonomy>
2114                                               <id provider="uniprot">331117</id>
2115                                               <code>NEOFI</code>
2116                                               <scientific_name>Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181)</scientific_name>
2117                                               <synonym>Aspergillus fischerianus</synonym>
2118                                             </taxonomy>
2119                                           </clade>
2120                                           <clade>
2121                                             <name>EMENI</name>
2122                                             <taxonomy>
2123                                               <id provider="eol">195546</id>
2124                                               <code>EMENI</code>
2125                                               <scientific_name>Emericella nidulans</scientific_name>
2126                                               <authority>Vuill. 1927</authority>
2127                                               <synonym>Aspergillus nidulans</synonym>
2128                                               <rank>species</rank>
2129                                             </taxonomy>
2130                                           </clade>
2131                                         </clade>
2132                                         <clade>
2133                                           <taxonomy>
2134                                             <id provider="uniprot">5052</id>
2135                                             <scientific_name>Aspergillus</scientific_name>
2136                                             <rank>genus</rank>
2137                                           </taxonomy>
2138                                           <clade>
2139                                             <name>ASPFL</name>
2140                                             <taxonomy>
2141                                               <id provider="uniprot">5059</id>
2142                                               <code>ASPFL</code>
2143                                               <scientific_name>Aspergillus flavus</scientific_name>
2144                                               <rank>species</rank>
2145                                             </taxonomy>
2146                                           </clade>
2147                                           <clade>
2148                                             <name>ASPNG</name>
2149                                             <taxonomy>
2150                                               <id provider="uniprot">5061</id>
2151                                               <code>ASPNG</code>
2152                                               <scientific_name>Aspergillus niger</scientific_name>
2153                                               <rank>species</rank>
2154                                             </taxonomy>
2155                                           </clade>
2156                                         </clade>
2157                                       </clade>
2158                                     </clade>
2159                                     <clade>
2160                                       <taxonomy>
2161                                         <id provider="uniprot">33183</id>
2162                                         <scientific_name>Onygenales</scientific_name>
2163                                         <rank>order</rank>
2164                                       </taxonomy>
2165                                       <clade>
2166                                         <name>COCIM</name>
2167                                         <taxonomy>
2168                                           <id provider="uniprot">5501</id>
2169                                           <code>COCIM</code>
2170                                           <scientific_name>Coccidioides immitis</scientific_name>
2171                                           <common_name>Valley fever fungus</common_name>
2172                                           <rank>species</rank>
2173                                         </taxonomy>
2174                                       </clade>
2175                                       <clade>
2176                                         <name>UNCRE</name>
2177                                         <taxonomy>
2178                                           <id provider="uniprot">336963</id>
2179                                           <code>UNCRE</code>
2180                                           <scientific_name>Uncinocarpus reesii (strain UAMH 1704)</scientific_name>
2181                                         </taxonomy>
2182                                       </clade>
2183                                     </clade>
2184                                   </clade>
2185                                   <clade>
2186                                     <taxonomy>
2187                                       <id provider="uniprot">656061</id>
2188                                       <code>TUBMM</code>
2189                                       <scientific_name>Tuber melanosporum (strain Mel28)</scientific_name>
2190                                       <common_name>Perigord black truffle</common_name>
2191                                       <synonym>Tuber melanosporum Mel28</synonym>
2192                                       <uri>http://www.gmvmonza.org/images%20parco/Tuber%20melanosporum%20p106.jpg</uri>
2193                                     </taxonomy>
2194                                   </clade>
2195                                 </clade>
2196                                 <clade>
2197                                   <taxonomy>
2198                                     <id provider="uniprot">4892</id>
2199                                     <scientific_name>Saccharomycetales</scientific_name>
2200                                     <common_name>budding yeasts</common_name>
2201                                     <rank>order</rank>
2202                                   </taxonomy>
2203                                   <clade>
2204                                     <name>Candida &amp; Debaryomyces &amp; Saccharomycetacea</name>
2205                                     <clade>
2206                                       <taxonomy>
2207                                         <id provider="uniprot">4893</id>
2208                                         <scientific_name>Saccharomycetaceae</scientific_name>
2209                                         <rank>family</rank>
2210                                       </taxonomy>
2211                                       <clade>
2212                                         <name>Saccharomyces_Pichia</name>
2213                                         <clade>
2214                                           <name>Saccharomyces</name>
2215                                           <clade>
2216                                             <name>YEAST</name>
2217                                             <taxonomy>
2218                                               <id provider="uniprot">4932</id>
2219                                               <code>YEAST</code>
2220                                               <scientific_name>Saccharomyces cerevisiae</scientific_name>
2221                                               <common_name>Baker&apos;s yeast</common_name>
2222                                               <rank>species</rank>
2223                                             </taxonomy>
2224                                           </clade>
2225                                           <clade>
2226                                             <name>SACCA</name>
2227                                             <taxonomy>
2228                                               <id provider="uniprot">27288</id>
2229                                               <code>SACCA</code>
2230                                               <scientific_name>Saccharomyces castellii</scientific_name>
2231                                               <common_name>Yeast</common_name>
2232                                               <synonym>Saccharomyces castellii</synonym>
2233                                               <rank>species</rank>
2234                                             </taxonomy>
2235                                           </clade>
2236                                         </clade>
2237                                         <clade>
2238                                           <name>PICAN</name>
2239                                           <taxonomy>
2240                                             <id provider="uniprot">4905</id>
2241                                             <code>PICAN</code>
2242                                             <scientific_name>Pichia angusta</scientific_name>
2243                                             <common_name>Yeast</common_name>
2244                                             <synonym>Hansenula polymorpha</synonym>
2245                                             <rank>species</rank>
2246                                           </taxonomy>
2247                                         </clade>
2248                                       </clade>
2249                                       <clade>
2250                                         <name>Kluyveromyces &amp; Ashbya</name>
2251                                         <clade>
2252                                           <name>ASHGO</name>
2253                                           <taxonomy>
2254                                             <id provider="uniprot">33169</id>
2255                                             <code>ASHGO</code>
2256                                             <scientific_name>Ashbya gossypii</scientific_name>
2257                                             <common_name>Yeast</common_name>
2258                                             <synonym>Eremothecium gossypii</synonym>
2259                                             <rank>species</rank>
2260                                           </taxonomy>
2261                                         </clade>
2262                                         <clade>
2263                                           <name>Kluyveromyces</name>
2264                                           <clade>
2265                                             <name>KLULA</name>
2266                                             <taxonomy>
2267                                               <id provider="uniprot">28985</id>
2268                                               <code>KLULA</code>
2269                                               <scientific_name>Kluyveromyces lactis</scientific_name>
2270                                               <common_name>Yeast</common_name>
2271                                               <synonym>Candida sphaerica</synonym>
2272                                               <rank>species</rank>
2273                                             </taxonomy>
2274                                           </clade>
2275                                           <clade>
2276                                             <name>KLUWA</name>
2277                                             <taxonomy>
2278                                               <id provider="uniprot">4914</id>
2279                                               <code>KLUWA</code>
2280                                               <scientific_name>Kluyveromyces waltii</scientific_name>
2281                                               <common_name>Yeast</common_name>
2282                                               <rank>species</rank>
2283                                             </taxonomy>
2284                                           </clade>
2285                                         </clade>
2286                                       </clade>
2287                                     </clade>
2288                                     <clade>
2289                                       <name>Candida &amp; Debaryomyces</name>
2290                                       <clade>
2291                                         <taxonomy>
2292                                           <id provider="uniprot">5475</id>
2293                                           <scientific_name>Candida</scientific_name>
2294                                           <rank>genus</rank>
2295                                         </taxonomy>
2296                                         <clade>
2297                                           <name>CANAL</name>
2298                                           <taxonomy>
2299                                             <id provider="uniprot">5476</id>
2300                                             <code>CANAL</code>
2301                                             <scientific_name>Candida albicans</scientific_name>
2302                                             <common_name>Yeast</common_name>
2303                                             <rank>species</rank>
2304                                           </taxonomy>
2305                                         </clade>
2306                                         <clade>
2307                                           <name>CANTR</name>
2308                                           <taxonomy>
2309                                             <id provider="uniprot">5482</id>
2310                                             <code>CANTR</code>
2311                                             <scientific_name>Candida tropicalis</scientific_name>
2312                                             <common_name>Yeast</common_name>
2313                                             <rank>species</rank>
2314                                           </taxonomy>
2315                                         </clade>
2316                                       </clade>
2317                                       <clade>
2318                                         <name>DEBHA</name>
2319                                         <taxonomy>
2320                                           <id provider="uniprot">4959</id>
2321                                           <code>DEBHA</code>
2322                                           <scientific_name>Debaryomyces hansenii</scientific_name>
2323                                           <common_name>Yeast</common_name>
2324                                           <synonym>Torulaspora hansenii</synonym>
2325                                           <rank>species</rank>
2326                                         </taxonomy>
2327                                       </clade>
2328                                     </clade>
2329                                   </clade>
2330                                   <clade>
2331                                     <name>YARLI</name>
2332                                     <taxonomy>
2333                                       <id provider="uniprot">4952</id>
2334                                       <code>YARLI</code>
2335                                       <scientific_name>Yarrowia lipolytica</scientific_name>
2336                                       <synonym>Candida lipolytica</synonym>
2337                                       <rank>species</rank>
2338                                     </taxonomy>
2339                                   </clade>
2340                                 </clade>
2341                               </clade>
2342                               <clade>
2343                                 <taxonomy>
2344                                   <id provider="uniprot">451866</id>
2345                                   <scientific_name>Taphrinomycotina</scientific_name>
2346                                   <rank>subphylum</rank>
2347                                 </taxonomy>
2348                                 <clade>
2349                                   <name>Pneumocystidomycetes &amp; Schizosaccharomycetes</name>
2350                                   <clade>
2351                                     <taxonomy>
2352                                       <id provider="uniprot">4895</id>
2353                                       <scientific_name>Schizosaccharomyces</scientific_name>
2354                                       <rank>genus</rank>
2355                                     </taxonomy>
2356                                     <clade>
2357                                       <name>SCHPO</name>
2358                                       <taxonomy>
2359                                         <id provider="uniprot">4896</id>
2360                                         <code>SCHPO</code>
2361                                         <scientific_name>Schizosaccharomyces pombe</scientific_name>
2362                                         <common_name>Fission yeast</common_name>
2363                                         <rank>species</rank>
2364                                       </taxonomy>
2365                                     </clade>
2366                                     <clade>
2367                                       <name>SCHJP</name>
2368                                       <taxonomy>
2369                                         <id provider="uniprot">4897</id>
2370                                         <code>SCHJP</code>
2371                                         <scientific_name>Schizosaccharomyces japonicus</scientific_name>
2372                                         <common_name>Fission yeast</common_name>
2373                                         <rank>species</rank>
2374                                       </taxonomy>
2375                                     </clade>
2376                                     <clade>
2377                                       <taxonomy>
2378                                         <id provider="uniprot">4899</id>
2379                                         <code>SCHOT</code>
2380                                         <scientific_name>Schizosaccharomyces octosporus</scientific_name>
2381                                         <common_name>Fission yeast</common_name>
2382                                         <rank>species</rank>
2383                                         <uri>http://www.dipbot.unict.it/sistematica/Immagini/12002.JPG</uri>
2384                                       </taxonomy>
2385                                     </clade>
2386                                   </clade>
2387                                   <clade>
2388                                     <name>PNECA</name>
2389                                     <taxonomy>
2390                                       <id provider="uniprot">4754</id>
2391                                       <code>PNECA</code>
2392                                       <scientific_name>Pneumocystis carinii</scientific_name>
2393                                       <rank>species</rank>
2394                                     </taxonomy>
2395                                   </clade>
2396                                 </clade>
2397                                 <clade>
2398                                   <name>SAICOM</name>
2399                                   <taxonomy>
2400                                     <id provider="uniprot">5606</id>
2401                                     <scientific_name>Saitoella complicata</scientific_name>
2402                                     <rank>species</rank>
2403                                   </taxonomy>
2404                                 </clade>
2405                               </clade>
2406                             </clade>
2407                             <clade>
2408                               <taxonomy>
2409                                 <id provider="uniprot">5204</id>
2410                                 <scientific_name>Basidiomycota</scientific_name>
2411                                 <rank>phylum</rank>
2412                               </taxonomy>
2413                               <clade>
2414                                 <name>Agaricomycotina &amp; Ustilaginomycotina &amp; Pucciniomycotina</name>
2415                                 <clade>
2416                                   <name>Agaricomycotina &amp; Ustilaginomycotina</name>
2417                                   <clade>
2418                                     <taxonomy>
2419                                       <id provider="uniprot">5302</id>
2420                                       <scientific_name>Agaricomycotina</scientific_name>
2421                                     </taxonomy>
2422                                     <clade>
2423                                       <taxonomy>
2424                                         <id provider="uniprot">155619</id>
2425                                         <scientific_name>Homobasidiomycetes</scientific_name>
2426                                         <rank>class</rank>
2427                                       </taxonomy>
2428                                       <reference doi="10.1098/rspb.2002.2123">
2429                                         <desc>Evolution of complex fruiting–body morphologies in homobasidiomycetes</desc>
2430                                       </reference>
2431                                       <clade>
2432                                         <name>Agaricomycetidae &amp; Gloeophyllum &amp; Aphyllophorales</name>
2433                                         <clade>
2434                                           <name>Agaricomycetidae &amp; Gloeophyllum</name>
2435                                           <clade>
2436                                             <taxonomy>
2437                                               <id provider="uniprot">452333</id>
2438                                               <scientific_name>Agaricomycetidae</scientific_name>
2439                                               <rank>subclass</rank>
2440                                             </taxonomy>
2441                                             <clade>
2442                                               <taxonomy>
2443                                                 <id provider="uniprot">5338</id>
2444                                                 <scientific_name>Agaricales</scientific_name>
2445                                                 <rank>order</rank>
2446                                               </taxonomy>
2447                                               <clade>
2448                                                 <name>Agaricus &amp; Coprinopsis &amp; Laccaria</name>
2449                                                 <clade>
2450                                                   <name>Agaricus &amp; Coprinopsis</name>
2451                                                   <clade>
2452                                                     <name>AGABB</name>
2453                                                     <taxonomy>
2454                                                       <id provider="uniprot">192524</id>
2455                                                       <scientific_name>Agaricus bisporus var. burnettii</scientific_name>
2456                                                     </taxonomy>
2457                                                   </clade>
2458                                                   <clade>
2459                                                     <name>COPCI</name>
2460                                                     <taxonomy>
2461                                                       <id provider="uniprot">5346</id>
2462                                                       <code>COPCI</code>
2463                                                       <scientific_name>Coprinopsis cinerea</scientific_name>
2464                                                       <common_name>Inky cap fungus</common_name>
2465                                                       <synonym>Hormographiella aspergillata</synonym>
2466                                                       <rank>species</rank>
2467                                                     </taxonomy>
2468                                                   </clade>
2469                                                 </clade>
2470                                                 <clade>
2471                                                   <name>LACBI</name>
2472                                                   <taxonomy>
2473                                                     <id provider="uniprot">29883</id>
2474                                                     <code>LACBI</code>
2475                                                     <scientific_name>Laccaria bicolor</scientific_name>
2476                                                     <common_name>Bicoloured deceiver</common_name>
2477                                                     <synonym>Laccaria laccata var. bicolor</synonym>
2478                                                     <rank>species</rank>
2479                                                   </taxonomy>
2480                                                 </clade>
2481                                               </clade>
2482                                               <clade>
2483                                                 <name>PLEOS</name>
2484                                                 <taxonomy>
2485                                                   <id provider="uniprot">5322</id>
2486                                                   <code>PLEOS</code>
2487                                                   <scientific_name>Pleurotus ostreatus</scientific_name>
2488                                                   <common_name>Oyster mushroom</common_name>
2489                                                   <synonym>White-rot fungus</synonym>
2490                                                   <rank>species</rank>
2491                                                 </taxonomy>
2492                                               </clade>
2493                                             </clade>
2494                                             <clade>
2495                                               <taxonomy>
2496                                                 <id provider="uniprot">68889</id>
2497                                                 <scientific_name>Boletales</scientific_name>
2498                                                 <synonym>Melanogastrales</synonym>
2499                                                 <synonym>Sclerodermatales</synonym>
2500                                                 <rank>order</rank>
2501                                               </taxonomy>
2502                                               <clade>
2503                                                 <taxonomy>
2504                                                   <id provider="uniprot">227334</id>
2505                                                   <scientific_name>Coniophorineae</scientific_name>
2506                                                   <rank>suborder</rank>
2507                                                 </taxonomy>
2508                                                 <clade>
2509                                                   <name>SERLAC</name>
2510                                                   <taxonomy>
2511                                                     <id provider="uniprot">85982</id>
2512                                                     <scientific_name>Serpula lacrymans</scientific_name>
2513                                                     <common_name>dry rot fungus</common_name>
2514                                                     <rank>species</rank>
2515                                                     <uri>http://www.biolib.cz/IMG/GAL/BIG/18135.jpg</uri>
2516                                                   </taxonomy>
2517                                                 </clade>
2518                                                 <clade>
2519                                                   <name>CONPUT</name>
2520                                                   <taxonomy>
2521                                                     <id provider="uniprot">80637</id>
2522                                                     <scientific_name>Coniophora puteana</scientific_name>
2523                                                     <authority>Schum. ex Fries</authority>
2524                                                     <common_name>cellar fungus</common_name>
2525                                                     <rank>species</rank>
2526                                                     <uri>http://genome.jgi-psf.org/public/Conpu1/P1240066_dp.jpg</uri>
2527                                                   </taxonomy>
2528                                                 </clade>
2529                                               </clade>
2530                                               <clade>
2531                                                 <name>HYDPIN</name>
2532                                                 <taxonomy>
2533                                                   <id provider="uniprot">388859</id>
2534                                                   <scientific_name>Hydnomerulius pinastri</scientific_name>
2535                                                   <common_name>Spiny dry rot fungus</common_name>
2536                                                   <rank>species</rank>
2537                                                   <uri>http://mycoweb-stv.narod.ru/fungi/Submitted/STV1/Hydnomerulius_pinastri_1_STV_20100913.jpg</uri>
2538                                                 </taxonomy>
2539                                               </clade>
2540                                             </clade>
2541                                           </clade>
2542                                           <clade>
2543                                             <name>GLOTR</name>
2544                                             <taxonomy>
2545                                               <id provider="uniprot">104355</id>
2546                                               <code>GLOTR</code>
2547                                               <scientific_name>Gloeophyllum trabeum</scientific_name>
2548                                               <common_name>Brown rot fungus</common_name>
2549                                               <rank>species</rank>
2550                                             </taxonomy>
2551                                           </clade>
2552                                         </clade>
2553                                         <clade>
2554                                           <taxonomy>
2555                                             <id provider="uniprot">5303</id>
2556                                             <scientific_name>Aphyllophorales</scientific_name>
2557                                             <authority>Gäum. (1926)</authority>
2558                                             <common_name>Shelf Fungi</common_name>
2559                                             <synonym>Polyporales</synonym>
2560                                             <rank>order</rank>
2561                                           </taxonomy>
2562                                           <clade>
2563                                             <taxonomy>
2564                                               <id provider="uniprot">83233</id>
2565                                               <scientific_name>Coriolaceae</scientific_name>
2566                                               <rank>family</rank>
2567                                             </taxonomy>
2568                                             <reference doi="10.1017/S1477200005001623">
2569                                               <desc>The phylogenetic distribution of resupinate forms across the major clades of mushroom-forming fungi (Homobasidiomycetes)</desc>
2570                                             </reference>
2571                                             <reference>
2572                                             </reference>
2573                                             <reference>
2574                                             </reference>
2575                                             <clade>
2576                                               <name>Postia &amp; Fomitopsis &amp; Wolfiporia &amp; Trametes</name>
2577                                               <clade>
2578                                                 <name>Antrodia clade</name>
2579                                                 <taxonomy>
2580                                                   <common_name>Antrodia clade</common_name>
2581                                                 </taxonomy>
2582                                                 <clade>
2583                                                   <name>POSPL</name>
2584                                                   <taxonomy>
2585                                                     <id provider="uniprot">104341</id>
2586                                                     <scientific_name>Postia placenta</scientific_name>
2587                                                     <rank>species</rank>
2588                                                     <uri>http://www.commanster.eu/commanster/Mushrooms/Polypore/SuPolypore/Postia.placenta.jpg</uri>
2589                                                   </taxonomy>
2590                                                 </clade>
2591                                                 <clade>
2592                                                   <name>FOMPIN</name>
2593                                                   <taxonomy>
2594                                                     <id provider="uniprot">40483</id>
2595                                                     <scientific_name>Fomitopsis pinicola</scientific_name>
2596                                                     <authority>P. Karst. 1881</authority>
2597                                                     <common_name>Red banded polypore</common_name>
2598                                                     <synonym>Fomes pinicola</synonym>
2599                                                     <rank>species</rank>
2600                                                     <uri>http://content6.eol.org/content/2009/06/07/01/48471_large.jpg</uri>
2601                                                   </taxonomy>
2602                                                 </clade>
2603                                               </clade>
2604                                               <clade>
2605                                                 <name>core polyporoid clade</name>
2606                                                 <taxonomy>
2607                                                   <common_name>core polyporoid clade</common_name>
2608                                                 </taxonomy>
2609                                                 <clade>
2610                                                   <name>WOLCOC</name>
2611                                                   <taxonomy>
2612                                                     <id provider="uniprot">81056</id>
2613                                                     <scientific_name>Wolfiporia cocos</scientific_name>
2614                                                     <rank>species</rank>
2615                                                     <uri>http://toolate.s7.coreserver.jp/kinoko/fungi/wolfiporia_cocos/w_cocos_002.jpg</uri>
2616                                                   </taxonomy>
2617                                                 </clade>
2618                                                 <clade>
2619                                                   <name>TRAVE</name>
2620                                                   <taxonomy>
2621                                                     <id provider="uniprot">5325</id>
2622                                                     <code>TRAVE</code>
2623                                                     <scientific_name>Trametes versicolor</scientific_name>
2624                                                     <authority>(L.) Lloyd 1921</authority>
2625                                                     <common_name>White-rot fungus</common_name>
2626                                                     <synonym>Coriolus versicolor</synonym>
2627                                                     <synonym>Bjerkandera versicolor</synonym>
2628                                                     <rank>species</rank>
2629                                                     <uri>http://www.mykoweb.com/CAF/photos/Trametes_versicolor(bab-1).jpg</uri>
2630                                                     <uri>http://www.mykoweb.com/CAF/photos/Trametes_versicolor(bab-2).jpg</uri>
2631                                                     <uri>http://www.mykoweb.com/CAF/photos/Trametes_versicolor(mgw-01).jpg</uri>
2632                                                     <uri>http://genome.jgi-psf.org/public/Trave1/Trametes_versicolor.JPG</uri>
2633                                                   </taxonomy>
2634                                                 </clade>
2635                                               </clade>
2636                                             </clade>
2637                                             <clade>
2638                                               <name>CERSU</name>
2639                                               <taxonomy>
2640                                                 <id provider="uniprot">42742</id>
2641                                                 <code>CERSU</code>
2642                                                 <scientific_name>Ceriporiopsis subvermispora</scientific_name>
2643                                                 <rank>species</rank>
2644                                               </taxonomy>
2645                                             </clade>
2646                                           </clade>
2647                                           <clade>
2648                                             <name>DICSQU</name>
2649                                             <taxonomy>
2650                                               <id provider="uniprot">114155</id>
2651                                               <scientific_name>Dichomitus squalens</scientific_name>
2652                                               <authority>(P. Karst.) D. A. Reid 1965</authority>
2653                                               <common_name>Red rot</common_name>
2654                                               <synonym>Polyporus anceps</synonym>
2655                                               <rank>species</rank>
2656                                               <uri>http://www.fs.fed.us/r3/resources/health/field-guide/images/large/sds-f199-large.jpg</uri>
2657                                             </taxonomy>
2658                                           </clade>
2659                                         </clade>
2660                                       </clade>
2661                                       <clade>
2662                                         <name>HETAN</name>
2663                                         <taxonomy>
2664                                           <id provider="uniprot">13563</id>
2665                                           <code>HETAN</code>
2666                                           <scientific_name>Heterobasidion annosum</scientific_name>
2667                                           <common_name>Root rot fungus</common_name>
2668                                           <rank>species</rank>
2669                                         </taxonomy>
2670                                       </clade>
2671                                     </clade>
2672                                     <clade>
2673                                       <taxonomy>
2674                                         <id provider="uniprot">5215</id>
2675                                         <scientific_name>Tremellaceae</scientific_name>
2676                                         <rank>family</rank>
2677                                       </taxonomy>
2678                                       <clade>
2679                                         <name>CRYNE</name>
2680                                         <taxonomy>
2681                                           <id provider="uniprot">5207</id>
2682                                           <code>CRYNE</code>
2683                                           <scientific_name>Cryptococcus neoformans</scientific_name>
2684                                           <synonym>Filobasidiella neoformans</synonym>
2685                                           <rank>species</rank>
2686                                         </taxonomy>
2687                                       </clade>
2688                                       <clade>
2689                                         <name>TREME</name>
2690                                         <taxonomy>
2691                                           <id provider="eol">1029985</id>
2692                                           <code>TREME</code>
2693                                           <scientific_name>Tremella mesenterica</scientific_name>
2694                                           <authority>Pers. 1800</authority>
2695                                           <common_name>Jelly fungus</common_name>
2696                                           <synonym>Yellow Brain</synonym>
2697                                           <synonym>Tremella lutescens</synonym>
2698                                           <rank>species</rank>
2699                                         </taxonomy>
2700                                       </clade>
2701                                     </clade>
2702                                   </clade>
2703                                   <clade>
2704                                     <taxonomy>
2705                                       <id provider="uniprot">452284</id>
2706                                       <scientific_name>Ustilaginomycotina</scientific_name>
2707                                       <rank>subphylum</rank>
2708                                     </taxonomy>
2709                                     <clade>
2710                                       <name>USTMA</name>
2711                                       <taxonomy>
2712                                         <id provider="uniprot">5270</id>
2713                                         <code>USTMA</code>
2714                                         <scientific_name>Ustilago maydis</scientific_name>
2715                                         <common_name>Smut fungus</common_name>
2716                                         <rank>species</rank>
2717                                       </taxonomy>
2718                                     </clade>
2719                                     <clade>
2720                                       <taxonomy>
2721                                         <id provider="uniprot">425265</id>
2722                                         <code>MALGO</code>
2723                                         <scientific_name>Malassezia globosa (strain ATCC MYA-4612 / CBS 7966)</scientific_name>
2724                                         <common_name>Dandruff-associated fungus</common_name>
2725                                       </taxonomy>
2726                                     </clade>
2727                                   </clade>
2728                                 </clade>
2729                                 <clade>
2730                                   <taxonomy>
2731                                     <id provider="uniprot">29000</id>
2732                                     <scientific_name>Pucciniomycotina</scientific_name>
2733                                     <rank>subphylum</rank>
2734                                   </taxonomy>
2735                                   <clade>
2736                                     <taxonomy>
2737                                       <id provider="uniprot">5258</id>
2738                                       <scientific_name>Pucciniales</scientific_name>
2739                                       <common_name>rusts</common_name>
2740                                       <rank>order</rank>
2741                                     </taxonomy>
2742                                     <clade>
2743                                       <name>PUCGR</name>
2744                                       <taxonomy>
2745                                         <id provider="eol">1029947</id>
2746                                         <code>PUCGR</code>
2747                                         <scientific_name>Puccinia graminis</scientific_name>
2748                                         <authority>Pers. 1794</authority>
2749                                         <common_name>Black stem rust fungus</common_name>
2750                                         <synonym>Wheat rust</synonym>
2751                                         <rank>species</rank>
2752                                       </taxonomy>
2753                                     </clade>
2754                                     <clade>
2755                                       <name>MELLP</name>
2756                                       <taxonomy>
2757                                         <id provider="eol">156696</id>
2758                                         <code>MELLP</code>
2759                                         <scientific_name>Melampsora laricis-populina</scientific_name>
2760                                         <authority>Kleb. 1902</authority>
2761                                         <synonym>Melampsora larici-populina</synonym>
2762                                         <synonym>Melampsora laricipopulina</synonym>
2763                                         <rank>species</rank>
2764                                       </taxonomy>
2765                                     </clade>
2766                                   </clade>
2767                                   <clade>
2768                                     <taxonomy>
2769                                       <id provider="uniprot">89013</id>
2770                                       <scientific_name>mitosporic Sporidiobolales</scientific_name>
2771                                     </taxonomy>
2772                                     <clade>
2773                                       <name>SPORO</name>
2774                                       <taxonomy>
2775                                         <id provider="eol">1013696</id>
2776                                         <scientific_name>Sporobolomyces roseus</scientific_name>
2777                                         <authority>Kluyver &amp; C. B. Niel 1924</authority>
2778                                         <rank>species</rank>
2779                                       </taxonomy>
2780                                     </clade>
2781                                     <clade>
2782                                       <name>RHOGR</name>
2783                                       <taxonomy>
2784                                         <id provider="uniprot">29898</id>
2785                                         <code>RHOGR</code>
2786                                         <scientific_name>Rhodotorula graminis</scientific_name>
2787                                         <common_name>Yeast</common_name>
2788                                         <rank>species</rank>
2789                                       </taxonomy>
2790                                     </clade>
2791                                   </clade>
2792                                 </clade>
2793                               </clade>
2794                               <clade>
2795                                 <name>WALSE</name>
2796                                 <taxonomy>
2797                                   <id provider="uniprot">148960</id>
2798                                   <code>WALSE</code>
2799                                   <scientific_name>Wallemia sebi</scientific_name>
2800                                   <rank>species</rank>
2801                                 </taxonomy>
2802                               </clade>
2803                             </clade>
2804                           </clade>
2805                           <clade>
2806                             <taxonomy>
2807                               <id provider="uniprot">451507</id>
2808                               <scientific_name>Mucoromycotina</scientific_name>
2809                               <rank>subphylum</rank>
2810                             </taxonomy>
2811                             <clade>
2812                               <taxonomy>
2813                                 <id provider="uniprot">34489</id>
2814                                 <scientific_name>Mucoraceae</scientific_name>
2815                                 <rank>family</rank>
2816                               </taxonomy>
2817                               <clade>
2818                                 <name>MUCCI</name>
2819                                 <taxonomy>
2820                                   <id provider="uniprot">36080</id>
2821                                   <code>MUCCI</code>
2822                                   <scientific_name>Mucor circinelloides</scientific_name>
2823                                   <synonym>Mucor griseo-roseus</synonym>
2824                                   <rank>species</rank>
2825                                 </taxonomy>
2826                               </clade>
2827                               <clade>
2828                                 <name>PHYBL</name>
2829                                 <taxonomy>
2830                                   <id provider="uniprot">4837</id>
2831                                   <code>PHYBL</code>
2832                                   <scientific_name>Phycomyces blakesleeanus</scientific_name>
2833                                   <rank>species</rank>
2834                                 </taxonomy>
2835                               </clade>
2836                               <clade>
2837                                 <name>RHIOR</name>
2838                                 <taxonomy>
2839                                   <id provider="uniprot">64495</id>
2840                                   <code>RHIOR</code>
2841                                   <scientific_name>Rhizopus oryzae</scientific_name>
2842                                   <synonym>Rhizopus delemar</synonym>
2843                                   <rank>species</rank>
2844                                 </taxonomy>
2845                               </clade>
2846                             </clade>
2847                             <clade>
2848                               <name>MORVER</name>
2849                               <taxonomy>
2850                                 <id provider="uniprot">78898</id>
2851                                 <scientific_name>Mortierella verticillata</scientific_name>
2852                                 <rank>species</rank>
2853                                 <uri>http://www.diark.org/img/species_pict/Mortierella_verticillata</uri>
2854                               </taxonomy>
2855                             </clade>
2856                           </clade>
2857                         </clade>
2858                         <clade>
2859                           <name>COEREV</name>
2860                           <taxonomy>
2861                             <id provider="uniprot">61392</id>
2862                             <scientific_name>Coemansia reversa</scientific_name>
2863                             <rank>species</rank>
2864                           </taxonomy>
2865                         </clade>
2866                       </clade>
2867                       <clade>
2868                         <taxonomy>
2869                           <id provider="uniprot">28583</id>
2870                           <code>ALLMA</code>
2871                           <scientific_name>Allomyces macrogynus</scientific_name>
2872                           <rank>species</rank>
2873                         </taxonomy>
2874                       </clade>
2875                     </clade>
2876                     <clade>
2877                       <taxonomy>
2878                         <id provider="uniprot">4761</id>
2879                         <scientific_name>Chytridiomycota</scientific_name>
2880                         <common_name>chytrids</common_name>
2881                         <synonym>Mastigomycotina</synonym>
2882                         <rank>phylum</rank>
2883                       </taxonomy>
2884                       <clade>
2885                         <taxonomy>
2886                           <id provider="uniprot">451435</id>
2887                           <scientific_name>Chytridiomycetes</scientific_name>
2888                           <rank>class</rank>
2889                         </taxonomy>
2890                         <clade>
2891                           <taxonomy>
2892                             <id provider="uniprot">109871</id>
2893                             <code>BATDE</code>
2894                             <scientific_name>Batrachochytrium dendrobatidis</scientific_name>
2895                             <common_name>Frog chytrid fungus</common_name>
2896                             <rank>species</rank>
2897                           </taxonomy>
2898                         </clade>
2899                         <clade>
2900                           <taxonomy>
2901                             <id provider="uniprot">109760</id>
2902                             <code>SPIPN</code>
2903                             <scientific_name>Spizellomyces punctatus</scientific_name>
2904                             <rank>species</rank>
2905                           </taxonomy>
2906                         </clade>
2907                       </clade>
2908                       <clade>
2909                         <name>GONPRO</name>
2910                         <taxonomy>
2911                           <id provider="eol">157984</id>
2912                           <scientific_name>Gonapodya prolifera</scientific_name>
2913                           <authority>A. Fisch. 1892</authority>
2914                           <rank>species</rank>
2915                           <uri>http://genome.jgi-psf.org/public/Ganpr1/Picture5.jpg</uri>
2916                         </taxonomy>
2917                       </clade>
2918                     </clade>
2919                   </clade>
2920                   <clade>
2921                     <name>ENCCU</name>
2922                     <taxonomy>
2923                       <id provider="uniprot">6035</id>
2924                       <code>ENCCU</code>
2925                       <scientific_name>Encephalitozoon cuniculi</scientific_name>
2926                       <common_name>Microsporidian parasite</common_name>
2927                       <rank>species</rank>
2928                     </taxonomy>
2929                   </clade>
2930                 </clade>
2931                 <clade>
2932                   <name>Fonticula &amp; Nucleariidae</name>
2933                   <reference doi="10.1093/molbev/msp185">
2934                   </reference>
2935                   <clade>
2936                     <name>FONALB</name>
2937                     <taxonomy>
2938                       <id provider="uniprot">691883</id>
2939                       <scientific_name>Fonticula alba</scientific_name>
2940                       <synonym>Fonticula alba Worley, Raper &amp; Hohl. 1979</synonym>
2941                       <rank>species</rank>
2942                     </taxonomy>
2943                   </clade>
2944                   <clade>
2945                     <name>NUCSIM</name>
2946                     <taxonomy>
2947                       <id provider="uniprot">154970</id>
2948                       <scientific_name>Nuclearia simplex</scientific_name>
2949                       <rank>species</rank>
2950                     </taxonomy>
2951                   </clade>
2952                 </clade>
2953               </clade>
2954             </clade>
2955             <clade>
2956               <name>THETRA</name>
2957               <taxonomy>
2958                 <id provider="uniprot">529818</id>
2959                 <scientific_name>Thecamonas trahens</scientific_name>
2960                 <rank>species</rank>
2961               </taxonomy>
2962             </clade>
2963           </clade>
2964           <clade>
2965             <name>Amoebozoa</name>
2966             <taxonomy>
2967               <id provider="uniprot">554915</id>
2968               <scientific_name>Amoebozoa</scientific_name>
2969             </taxonomy>
2970             <clade>
2971               <name>Dictyostelium</name>
2972               <taxonomy>
2973                 <id provider="uniprot">5782</id>
2974                 <scientific_name>Dictyostelium</scientific_name>
2975                 <rank>genus</rank>
2976               </taxonomy>
2977               <clade>
2978                 <name>DICDI</name>
2979                 <taxonomy>
2980                   <id provider="uniprot">44689</id>
2981                   <code>DICDI</code>
2982                   <scientific_name>Dictyostelium discoideum</scientific_name>
2983                   <common_name>Slime mold</common_name>
2984                   <rank>species</rank>
2985                 </taxonomy>
2986               </clade>
2987               <clade>
2988                 <name>DICPU</name>
2989                 <taxonomy>
2990                   <id provider="uniprot">5786</id>
2991                   <code>DICPU</code>
2992                   <scientific_name>Dictyostelium purpureum</scientific_name>
2993                   <common_name>Slime mold</common_name>
2994                   <rank>species</rank>
2995                 </taxonomy>
2996               </clade>
2997             </clade>
2998             <clade>
2999               <name>ENTHI</name>
3000               <taxonomy>
3001                 <id provider="uniprot">5759</id>
3002                 <code>ENTHI</code>
3003                 <scientific_name>Entamoeba histolytica</scientific_name>
3004                 <rank>species</rank>
3005               </taxonomy>
3006             </clade>
3007           </clade>
3008         </clade>
3009         <clade>
3010           <name>Bikonta</name>
3011           <reference doi="10.1099/ijs.0.63216-0">
3012           </reference>
3013           <clade>
3014             <name>Corticata</name>
3015             <clade>
3016               <name>Archaeplastida</name>
3017               <clade>
3018                 <taxonomy>
3019                   <id provider="uniprot">33090</id>
3020                   <scientific_name>Viridiplantae</scientific_name>
3021                   <common_name>green plants</common_name>
3022                   <rank>kingdom</rank>
3023                 </taxonomy>
3024                 <clade>
3025                   <taxonomy>
3026                     <id provider="uniprot">3193</id>
3027                     <scientific_name>Embryophyta</scientific_name>
3028                   </taxonomy>
3029                   <clade>
3030                     <taxonomy>
3031                       <id provider="uniprot">58023</id>
3032                       <scientific_name>Tracheophyta</scientific_name>
3033                     </taxonomy>
3034                     <clade>
3035                       <taxonomy>
3036                         <id provider="uniprot">3398</id>
3037                         <scientific_name>Magnoliophyta</scientific_name>
3038                         <common_name>flowering plants</common_name>
3039                         <synonym>Angiospermae</synonym>
3040                       </taxonomy>
3041                       <clade>
3042                         <taxonomy>
3043                           <id provider="uniprot">71240</id>
3044                           <scientific_name>eudicotyledons</scientific_name>
3045                         </taxonomy>
3046                         <clade>
3047                           <taxonomy>
3048                             <id provider="uniprot">91827</id>
3049                             <scientific_name>core eudicotyledons</scientific_name>
3050                           </taxonomy>
3051                           <clade>
3052                             <taxonomy>
3053                               <id provider="uniprot">71275</id>
3054                               <scientific_name>rosids</scientific_name>
3055                               <synonym>Rosidae</synonym>
3056                               <rank>subclass</rank>
3057                             </taxonomy>
3058                             <clade>
3059                               <name>fabids &amp; malvids</name>
3060                               <clade>
3061                                 <taxonomy>
3062                                   <id provider="uniprot">91835</id>
3063                                   <scientific_name>fabids</scientific_name>
3064                                   <synonym>eurosids I</synonym>
3065                                 </taxonomy>
3066                                 <clade>
3067                                   <taxonomy>
3068                                     <id provider="uniprot">3646</id>
3069                                     <scientific_name>Malpighiales</scientific_name>
3070                                     <rank>order</rank>
3071                                   </taxonomy>
3072                                   <clade>
3073                                     <taxonomy>
3074                                       <id provider="uniprot">3977</id>
3075                                       <scientific_name>Euphorbiaceae</scientific_name>
3076                                       <common_name>spurge family</common_name>
3077                                       <rank>family</rank>
3078                                     </taxonomy>
3079                                     <clade>
3080                                       <name>MANES</name>
3081                                       <taxonomy>
3082                                         <id provider="uniprot">3983</id>
3083                                         <code>MANES</code>
3084                                         <scientific_name>Manihot esculenta</scientific_name>
3085                                         <common_name>Tapioca</common_name>
3086                                         <synonym>Jatropha manihot</synonym>
3087                                         <rank>species</rank>
3088                                         <uri>http://upload.wikimedia.org/wikipedia/commons/9/99/Iwata_kenichi_cassava.jpg</uri>
3089                                       </taxonomy>
3090                                     </clade>
3091                                     <clade>
3092                                       <name>RICCO</name>
3093                                       <taxonomy>
3094                                         <id provider="uniprot">3988</id>
3095                                         <code>RICCO</code>
3096                                         <scientific_name>Ricinus communis</scientific_name>
3097                                         <common_name>Castor bean</common_name>
3098                                         <synonym>Ricinus sanguineus</synonym>
3099                                         <rank>species</rank>
3100                                         <uri>http://nmorganics.net/wp-content/uploads/2011/09/castor.jpg</uri>
3101                                       </taxonomy>
3102                                     </clade>
3103                                   </clade>
3104                                   <clade>
3105                                     <name>POPTR</name>
3106                                     <taxonomy>
3107                                       <id provider="uniprot">3694</id>
3108                                       <code>POPTR</code>
3109                                       <scientific_name>Populus trichocarpa</scientific_name>
3110                                       <common_name>Western balsam poplar</common_name>
3111                                       <synonym>Populus balsamifera subsp. trichocarpa</synonym>
3112                                       <rank>species</rank>
3113                                     </taxonomy>
3114                                   </clade>
3115                                 </clade>
3116                                 <clade>
3117                                   <name>Rosales &amp; Cucurbitales &amp; Fabales</name>
3118                                   <clade>
3119                                     <taxonomy>
3120                                       <id provider="uniprot">3814</id>
3121                                       <scientific_name>Papilionoideae</scientific_name>
3122                                       <synonym>Faboideae</synonym>
3123                                       <rank>subfamily</rank>
3124                                     </taxonomy>
3125                                     <clade>
3126                                       <name>SOYBN</name>
3127                                       <taxonomy>
3128                                         <id provider="uniprot">3847</id>
3129                                         <code>SOYBN</code>
3130                                         <scientific_name>Glycine max</scientific_name>
3131                                         <authority>cv. Wye</authority>
3132                                         <common_name>Soybean</common_name>
3133                                         <synonym>Glycine hispida</synonym>
3134                                         <rank>species</rank>
3135                                       </taxonomy>
3136                                     </clade>
3137                                     <clade>
3138                                       <name>MEDTR</name>
3139                                       <taxonomy>
3140                                         <id provider="uniprot">3880</id>
3141                                         <code>MEDTR</code>
3142                                         <scientific_name>Medicago truncatula</scientific_name>
3143                                         <common_name>Barrel medic</common_name>
3144                                         <synonym>Medicago tribuloides</synonym>
3145                                         <rank>species</rank>
3146                                         <uri>http://crdp.ac-besancon.fr/flore/FABACEAE/photos/medicago_truncatula_30.jpg</uri>
3147                                       </taxonomy>
3148                                     </clade>
3149                                   </clade>
3150                                   <clade>
3151                                     <name>Rosales &amp; Cucurbitales</name>
3152                                     <clade>
3153                                       <name>CUCSA</name>
3154                                       <taxonomy>
3155                                         <id provider="uniprot">3659</id>
3156                                         <code>CUCSA</code>
3157                                         <scientific_name>Cucumis sativus</scientific_name>
3158                                         <common_name>Cucumber</common_name>
3159                                         <rank>species</rank>
3160                                       </taxonomy>
3161                                     </clade>
3162                                     <clade>
3163                                       <taxonomy>
3164                                         <id provider="uniprot">3745</id>
3165                                         <scientific_name>Rosaceae</scientific_name>
3166                                         <common_name>rose family</common_name>
3167                                         <rank>family</rank>
3168                                       </taxonomy>
3169                                       <clade>
3170                                         <name>PRUPE</name>
3171                                         <taxonomy>
3172                                           <id provider="uniprot">3760</id>
3173                                           <code>PRUPE</code>
3174                                           <scientific_name>Prunus persica</scientific_name>
3175                                           <common_name>Peach</common_name>
3176                                           <synonym>Persica vulgaris</synonym>
3177                                           <synonym>Amygdalus persica</synonym>
3178                                           <rank>species</rank>
3179                                           <uri>http://www.mezhenskyjv.narod.ru/foto_sortov/dokaz.jpg</uri>
3180                                         </taxonomy>
3181                                       </clade>
3182                                       <clade>
3183                                         <name>FRAVE</name>
3184                                         <taxonomy>
3185                                           <id provider="uniprot">57918</id>
3186                                           <code>FRAVE</code>
3187                                           <scientific_name>Fragaria vesca</scientific_name>
3188                                           <common_name>Woodland strawberry</common_name>
3189                                           <synonym>Fragaria vesca L.</synonym>
3190                                           <synonym>European strawberry</synonym>
3191                                           <synonym>alpine strawberry</synonym>
3192                                           <rank>species</rank>
3193                                           <uri>http://www.boga.ruhr-uni-bochum.de/html/Fragaria.vesca.ja6.jpg</uri>
3194                                           <uri>http://caliban.mpiz-koeln.mpg.de/thome/band3/tafel_092_small.jpg</uri>
3195                                         </taxonomy>
3196                                       </clade>
3197                                     </clade>
3198                                   </clade>
3199                                 </clade>
3200                               </clade>
3201                               <clade>
3202                                 <taxonomy>
3203                                   <id provider="uniprot">91836</id>
3204                                   <scientific_name>malvids</scientific_name>
3205                                   <synonym>eurosids II</synonym>
3206                                 </taxonomy>
3207                                 <clade>
3208                                   <name>Brassicales &amp; Sapindales</name>
3209                                   <clade>
3210                                     <taxonomy>
3211                                       <id provider="uniprot">3699</id>
3212                                       <scientific_name>Brassicales</scientific_name>
3213                                       <synonym>Capparales</synonym>
3214                                       <rank>order</rank>
3215                                     </taxonomy>
3216                                     <clade>
3217                                       <taxonomy>
3218                                         <id provider="uniprot">3700</id>
3219                                         <scientific_name>Brassicaceae</scientific_name>
3220                                         <rank>family</rank>
3221                                       </taxonomy>
3222                                       <clade>
3223                                         <taxonomy>
3224                                           <id provider="uniprot">3701</id>
3225                                           <scientific_name>Arabidopsis</scientific_name>
3226                                           <rank>genus</rank>
3227                                         </taxonomy>
3228                                         <clade>
3229                                           <name>ARATH</name>
3230                                           <taxonomy>
3231                                             <id provider="uniprot">3702</id>
3232                                             <code>ARATH</code>
3233                                             <scientific_name>Arabidopsis thaliana</scientific_name>
3234                                             <common_name>Mouse-ear cress</common_name>
3235                                             <rank>species</rank>
3236                                           </taxonomy>
3237                                         </clade>
3238                                         <clade>
3239                                           <name>ARALY</name>
3240                                           <taxonomy>
3241                                             <id provider="uniprot">59689</id>
3242                                             <code>ARALY</code>
3243                                             <scientific_name>Arabidopsis lyrata</scientific_name>
3244                                             <common_name>Lyre-leaved rock-cress</common_name>
3245                                             <rank>species</rank>
3246                                           </taxonomy>
3247                                         </clade>
3248                                       </clade>
3249                                       <clade>
3250                                         <taxonomy>
3251                                           <id provider="uniprot">98038</id>
3252                                           <code>THEHA</code>
3253                                           <scientific_name>Thellungiella halophila</scientific_name>
3254                                           <common_name>Salt cress</common_name>
3255                                           <rank>species</rank>
3256                                           <uri>http://thellungiella.org/images/thellun1.jpg</uri>
3257                                         </taxonomy>
3258                                       </clade>
3259                                     </clade>
3260                                     <clade>
3261                                       <name>CARPA</name>
3262                                       <taxonomy>
3263                                         <id provider="uniprot">3649</id>
3264                                         <code>CARPA</code>
3265                                         <scientific_name>Carica papaya</scientific_name>
3266                                         <common_name>Papaya</common_name>
3267                                         <rank>species</rank>
3268                                         <uri>http://www.biopix.com/photos/jko-carica-papaya-00412.jpg</uri>
3269                                         <uri>http://www.texasriviera.com/greenthumbs/papaya10.jpg</uri>
3270                                       </taxonomy>
3271                                     </clade>
3272                                   </clade>
3273                                   <clade>
3274                                     <taxonomy>
3275                                       <id provider="uniprot">2706</id>
3276                                       <scientific_name>Citrus</scientific_name>
3277                                       <rank>genus</rank>
3278                                     </taxonomy>
3279                                     <clade>
3280                                       <name>CITSI</name>
3281                                       <taxonomy>
3282                                         <id provider="uniprot">2711</id>
3283                                         <code>CITSI</code>
3284                                         <scientific_name>Citrus sinensis</scientific_name>
3285                                         <common_name>Sweet orange</common_name>
3286                                         <synonym>Citrus x sinensis</synonym>
3287                                         <rank>species</rank>
3288                                         <uri>http://www.west-crete.com/flowers/photos/citrus_sinensis-1.jpg</uri>
3289                                       </taxonomy>
3290                                     </clade>
3291                                     <clade>
3292                                       <name>CITCLE</name>
3293                                       <taxonomy>
3294                                         <id provider="uniprot">85681</id>
3295                                         <scientific_name>Citrus clementina</scientific_name>
3296                                         <synonym>Citrus clementina hort. ex Tanaka</synonym>
3297                                         <rank>species</rank>
3298                                         <uri>http://palmen-bolschetz.de/images/citrus%20clementine.jpg</uri>
3299                                       </taxonomy>
3300                                     </clade>
3301                                   </clade>
3302                                 </clade>
3303                                 <clade>
3304                                   <name>EUCGR</name>
3305                                   <taxonomy>
3306                                     <id provider="uniprot">71139</id>
3307                                     <code>EUCGR</code>
3308                                     <scientific_name>Eucalyptus grandis</scientific_name>
3309                                     <common_name>Flooded gum</common_name>
3310                                     <rank>species</rank>
3311                                     <uri>http://www.calflora.net/losangelesarboretum/images/eucalyptus_grandis.jpg</uri>
3312                                     <uri>http://www.anbg.gov.au/projects/eucalypts/images/eucalyptus-grandis-bark.jpg</uri>
3313                                   </taxonomy>
3314                                 </clade>
3315                               </clade>
3316                             </clade>
3317                             <clade>
3318                               <name>VITVI</name>
3319                               <taxonomy>
3320                                 <id provider="eol">582304</id>
3321                                 <code>VITVI</code>
3322                                 <scientific_name>Vitis vinifera</scientific_name>
3323                                 <common_name>Grape</common_name>
3324                                 <rank>species</rank>
3325                               </taxonomy>
3326                             </clade>
3327                           </clade>
3328                           <clade>
3329                             <name>MIMGU</name>
3330                             <taxonomy>
3331                               <id provider="uniprot">4155</id>
3332                               <code>MIMGU</code>
3333                               <scientific_name>Mimulus guttatus</scientific_name>
3334                               <common_name>Yellow monkey flower</common_name>
3335                               <synonym>Yellow monkey flower</synonym>
3336                               <rank>species</rank>
3337                             </taxonomy>
3338                           </clade>
3339                         </clade>
3340                         <clade>
3341                           <name>AQUCA</name>
3342                           <taxonomy>
3343                             <id provider="uniprot">218851</id>
3344                             <code>AQUCA</code>
3345                             <scientific_name>Aquilegia caerulea</scientific_name>
3346                             <authority>E.James</authority>
3347                             <common_name>Rocky mountain columbine</common_name>
3348                             <synonym>Aquilegia coerulea</synonym>
3349                             <rank>species</rank>
3350                             <uri>http://content9.eol.org/content/2010/01/01/03/15137_large.jpg</uri>
3351                           </taxonomy>
3352                         </clade>
3353                       </clade>
3354                       <clade>
3355                         <taxonomy>
3356                           <id provider="uniprot">4479</id>
3357                           <scientific_name>Poaceae</scientific_name>
3358                           <common_name>grass family</common_name>
3359                           <synonym>Gramineae</synonym>
3360                           <rank>family</rank>
3361                         </taxonomy>
3362                         <clade>
3363                           <taxonomy>
3364                             <id provider="uniprot">359160</id>
3365                             <scientific_name>BEP clade</scientific_name>
3366                           </taxonomy>
3367                           <clade>
3368                             <taxonomy>
3369                               <id provider="uniprot">4527</id>
3370                               <scientific_name>Oryza</scientific_name>
3371                               <rank>genus</rank>
3372                             </taxonomy>
3373                             <clade>
3374                               <name>ORYSJ</name>
3375                               <taxonomy>
3376                                 <id provider="uniprot">39947</id>
3377                                 <code>ORYSJ</code>
3378                                 <scientific_name>Oryza sativa subsp. japonica</scientific_name>
3379                                 <common_name>Rice</common_name>
3380                               </taxonomy>
3381                             </clade>
3382                             <clade>
3383                               <name>ORYSA</name>
3384                               <taxonomy>
3385                                 <id provider="uniprot">4530</id>
3386                                 <code>ORYSA</code>
3387                                 <scientific_name>Oryza sativa</scientific_name>
3388                                 <common_name>Rice</common_name>
3389                                 <rank>species</rank>
3390                               </taxonomy>
3391                             </clade>
3392                           </clade>
3393                           <clade>
3394                             <name>BRADI</name>
3395                             <taxonomy>
3396                               <id provider="uniprot">15368</id>
3397                               <code>BRADI</code>
3398                               <scientific_name>Brachypodium distachyon</scientific_name>
3399                               <common_name>Purple false brome</common_name>
3400                               <synonym>Trachynia distachya</synonym>
3401                               <rank>species</rank>
3402                               <uri>http://content5.eol.org/content/2011/01/15/20/16311_large.jpg</uri>
3403                             </taxonomy>
3404                           </clade>
3405                         </clade>
3406                         <clade>
3407                           <taxonomy>
3408                             <id provider="uniprot">147369</id>
3409                             <scientific_name>Panicoideae</scientific_name>
3410                             <authority>Link, 1827</authority>
3411                             <synonym>Centothecoideae</synonym>
3412                             <rank>subfamily</rank>
3413                           </taxonomy>
3414                           <clade>
3415                             <taxonomy>
3416                               <id provider="uniprot">147429</id>
3417                               <scientific_name>Andropogoneae</scientific_name>
3418                               <authority>Dumort., 1824</authority>
3419                               <rank>tribe</rank>
3420                             </taxonomy>
3421                             <clade>
3422                               <name>SORBI</name>
3423                               <taxonomy>
3424                                 <id provider="uniprot">4558</id>
3425                                 <code>SORBI</code>
3426                                 <scientific_name>Sorghum bicolor</scientific_name>
3427                                 <common_name>Sorghum</common_name>
3428                                 <synonym>Sorghum vulgare</synonym>
3429                                 <rank>species</rank>
3430                               </taxonomy>
3431                             </clade>
3432                             <clade>
3433                               <name>MAIZE</name>
3434                               <taxonomy>
3435                                 <id provider="uniprot">4577</id>
3436                                 <code>MAIZE</code>
3437                                 <scientific_name>Zea mays</scientific_name>
3438                                 <common_name>Maize</common_name>
3439                                 <rank>species</rank>
3440                               </taxonomy>
3441                             </clade>
3442                           </clade>
3443                           <clade>
3444                             <name>SETIT</name>
3445                             <taxonomy>
3446                               <id provider="uniprot">4555</id>
3447                               <code>SETIT</code>
3448                               <scientific_name>Setaria italica</scientific_name>
3449                               <common_name>Foxtail millet</common_name>
3450                               <synonym>Panicum italicum</synonym>
3451                               <rank>species</rank>
3452                               <uri>http://en.academic.ru/pictures/enwiki/83/Setaria_italica0.jpg</uri>
3453                             </taxonomy>
3454                           </clade>
3455                         </clade>
3456                       </clade>
3457                     </clade>
3458                     <clade>
3459                       <name>SELMO</name>
3460                       <taxonomy>
3461                         <id provider="uniprot">34167</id>
3462                         <code>SELMO</code>
3463                         <scientific_name>Selaginella mollis</scientific_name>
3464                         <common_name>Moss</common_name>
3465                         <rank>species</rank>
3466                       </taxonomy>
3467                     </clade>
3468                   </clade>
3469                   <clade>
3470                     <name>PHYPA</name>
3471                     <taxonomy>
3472                       <id provider="uniprot">145481</id>
3473                       <code>PHYPA</code>
3474                       <scientific_name>Physcomitrella patens subsp. patens</scientific_name>
3475                       <common_name>Moss</common_name>
3476                       <rank>subspecies</rank>
3477                     </taxonomy>
3478                   </clade>
3479                 </clade>
3480                 <clade>
3481                   <taxonomy>
3482                     <id provider="uniprot">3041</id>
3483                     <scientific_name>Chlorophyta</scientific_name>
3484                     <rank>phylum</rank>
3485                   </taxonomy>
3486                   <clade>
3487                     <taxonomy>
3488                       <id provider="uniprot">13792</id>
3489                       <scientific_name>Mamiellales</scientific_name>
3490                       <rank>order</rank>
3491                     </taxonomy>
3492                     <clade>
3493                       <taxonomy>
3494                         <id provider="uniprot">70447</id>
3495                         <scientific_name>Ostreococcus</scientific_name>
3496                         <rank>genus</rank>
3497                       </taxonomy>
3498                       <clade>
3499                         <name>OSTLU</name>
3500                         <taxonomy>
3501                           <id provider="uniprot">436017</id>
3502                           <code>OSTLU</code>
3503                           <scientific_name>Ostreococcus lucimarinus (strain CCE9901)</scientific_name>
3504                         </taxonomy>
3505                       </clade>
3506                       <clade>
3507                         <name>OSTTA</name>
3508                         <taxonomy>
3509                           <id provider="uniprot">70448</id>
3510                           <code>OSTTA</code>
3511                           <scientific_name>Ostreococcus tauri</scientific_name>
3512                           <rank>species</rank>
3513                         </taxonomy>
3514                       </clade>
3515                       <clade>
3516                         <name>OSTRC</name>
3517                         <taxonomy>
3518                           <id provider="uniprot">385169</id>
3519                           <scientific_name>Ostreococcus sp. RCC809</scientific_name>
3520                           <rank>species</rank>
3521                         </taxonomy>
3522                       </clade>
3523                     </clade>
3524                     <clade>
3525                       <taxonomy>
3526                         <id provider="uniprot">38832</id>
3527                         <scientific_name>Micromonas</scientific_name>
3528                         <rank>genus</rank>
3529                       </taxonomy>
3530                       <clade>
3531                         <name>MICPC</name>
3532                         <taxonomy>
3533                           <id provider="uniprot">564608</id>
3534                           <code>MICPC</code>
3535                           <scientific_name>Micromonas pusilla (strain CCMP1545)</scientific_name>
3536                           <common_name>Picoplanktonic green alga</common_name>
3537                         </taxonomy>
3538                       </clade>
3539                       <clade>
3540                         <name>MICSR</name>
3541                         <taxonomy>
3542                           <id provider="uniprot">296587</id>
3543                           <code>MICSR</code>
3544                           <scientific_name>Micromonas sp. (strain RCC299 / NOUM17)</scientific_name>
3545                           <common_name>Picoplanktonic green alga</common_name>
3546                           <synonym>Micromonas sp. RCC299</synonym>
3547                           <rank>species</rank>
3548                         </taxonomy>
3549                       </clade>
3550                     </clade>
3551                   </clade>
3552                   <clade>
3553                     <name>Trebouxiophyceae_Chlorophyceae</name>
3554                     <clade>
3555                       <taxonomy>
3556                         <id provider="uniprot">3042</id>
3557                         <scientific_name>Chlamydomonadales</scientific_name>
3558                         <rank>order</rank>
3559                       </taxonomy>
3560                       <clade>
3561                         <name>CHLRE</name>
3562                         <taxonomy>
3563                           <id provider="uniprot">3055</id>
3564                           <code>CHLRE</code>
3565                           <scientific_name>Chlamydomonas reinhardtii</scientific_name>
3566                           <synonym>Chlamydomonas smithii</synonym>
3567                           <rank>species</rank>
3568                         </taxonomy>
3569                       </clade>
3570                       <clade>
3571                         <name>VOLCA</name>
3572                         <taxonomy>
3573                           <id provider="uniprot">3067</id>
3574                           <code>VOLCA</code>
3575                           <scientific_name>Volvox carteri</scientific_name>
3576                           <common_name>Green alga</common_name>
3577                           <rank>species</rank>
3578                         </taxonomy>
3579                       </clade>
3580                     </clade>
3581                     <clade>
3582                       <taxonomy>
3583                         <id provider="uniprot">75966</id>
3584                         <scientific_name>Trebouxiophyceae</scientific_name>
3585                         <rank>class</rank>
3586                       </taxonomy>
3587                       <clade>
3588                         <name>CHLSP</name>
3589                         <taxonomy>
3590                           <id provider="uniprot">554065</id>
3591                           <scientific_name>Chlorella variabilis</scientific_name>
3592                           <synonym>Chlorella sp. NC64A</synonym>
3593                           <rank>species</rank>
3594                         </taxonomy>
3595                       </clade>
3596                       <clade>
3597                         <name>CHLVUL</name>
3598                         <taxonomy>
3599                           <id provider="uniprot">574566</id>
3600                           <scientific_name>Coccomyxa sp. C-169</scientific_name>
3601                           <synonym>Chlorella vulgaris C-169</synonym>
3602                           <rank>species</rank>
3603                         </taxonomy>
3604                       </clade>
3605                     </clade>
3606                   </clade>
3607                 </clade>
3608               </clade>
3609               <clade>
3610                 <name>CYAME</name>
3611                 <taxonomy>
3612                   <id provider="uniprot">45157</id>
3613                   <code>CYAME</code>
3614                   <scientific_name>Cyanidioschyzon merolae</scientific_name>
3615                   <common_name>Red alga</common_name>
3616                   <rank>species</rank>
3617                   <uri>http://merolae.biol.s.u-tokyo.ac.jp/</uri>
3618                 </taxonomy>
3619               </clade>
3620             </clade>
3621             <clade>
3622               <name>Chromalveolate</name>
3623               <reference doi="10.1073/pnas.0712248105">
3624               </reference>
3625               <clade>
3626                 <name>Heterokonta_Alveolata</name>
3627                 <clade>
3628                   <name>Alveolata</name>
3629                   <taxonomy>
3630                     <id provider="uniprot">33630</id>
3631                     <scientific_name>Alveolata</scientific_name>
3632                   </taxonomy>
3633                   <clade>
3634                     <taxonomy>
3635                       <id provider="uniprot">5794</id>
3636                       <scientific_name>Apicomplexa</scientific_name>
3637                       <rank>phylum</rank>
3638                     </taxonomy>
3639                     <clade>
3640                       <taxonomy>
3641                         <id provider="uniprot">422676</id>
3642                         <scientific_name>Aconoidasida</scientific_name>
3643                         <rank>class</rank>
3644                       </taxonomy>
3645                       <clade>
3646                         <taxonomy>
3647                           <id provider="uniprot">5820</id>
3648                           <scientific_name>Plasmodium</scientific_name>
3649                           <rank>genus</rank>
3650                         </taxonomy>
3651                         <clade>
3652                           <name>PLAFA</name>
3653                           <taxonomy>
3654                             <id provider="uniprot">5833</id>
3655                             <code>PLAFA</code>
3656                             <scientific_name>Plasmodium falciparum</scientific_name>
3657                             <rank>species</rank>
3658                           </taxonomy>
3659                         </clade>
3660                         <clade>
3661                           <name>PLAYO</name>
3662                           <taxonomy>
3663                             <id provider="uniprot">73239</id>
3664                             <code>PLAYO</code>
3665                             <scientific_name>Plasmodium yoelii yoelii</scientific_name>
3666                             <rank>subspecies</rank>
3667                           </taxonomy>
3668                         </clade>
3669                         <clade>
3670                           <name>PLACH</name>
3671                           <taxonomy>
3672                             <id provider="uniprot">5825</id>
3673                             <code>PLACH</code>
3674                             <scientific_name>Plasmodium chabaudi</scientific_name>
3675                             <rank>species</rank>
3676                           </taxonomy>
3677                         </clade>
3678                       </clade>
3679                       <clade>
3680                         <name>Theileria</name>
3681                         <taxonomy>
3682                           <id provider="uniprot">5873</id>
3683                           <scientific_name>Theileria</scientific_name>
3684                           <rank>genus</rank>
3685                         </taxonomy>
3686                         <clade>
3687                           <name>THEPA</name>
3688                           <taxonomy>
3689                             <id provider="uniprot">5875</id>
3690                             <code>THEPA</code>
3691                             <scientific_name>Theileria parva</scientific_name>
3692                             <rank>species</rank>
3693                           </taxonomy>
3694                         </clade>
3695                         <clade>
3696                           <name>THEAN</name>
3697                           <taxonomy>
3698                             <id provider="uniprot">5874</id>
3699                             <code>THEAN</code>
3700                             <scientific_name>Theileria annulata</scientific_name>
3701                             <rank>species</rank>
3702                           </taxonomy>
3703                         </clade>
3704                       </clade>
3705                     </clade>
3706                     <clade>
3707                       <taxonomy>
3708                         <id provider="uniprot">423054</id>
3709                         <scientific_name>Eimeriorina</scientific_name>
3710                         <rank>suborder</rank>
3711                       </taxonomy>
3712                       <clade>
3713                         <taxonomy>
3714                           <id provider="uniprot">5806</id>
3715                           <scientific_name>Cryptosporidium</scientific_name>
3716                           <rank>genus</rank>
3717                         </taxonomy>
3718                         <clade>
3719                           <name>CRYHO</name>
3720                           <taxonomy>
3721                             <id provider="uniprot">237895</id>
3722                             <code>CRYHO</code>
3723                             <scientific_name>Cryptosporidium hominis</scientific_name>
3724                             <rank>species</rank>
3725                           </taxonomy>
3726                         </clade>
3727                         <clade>
3728                           <name>CRYPV</name>
3729                           <taxonomy>
3730                             <id provider="uniprot">5807</id>
3731                             <code>CRYPV</code>
3732                             <scientific_name>Cryptosporidium parvum</scientific_name>
3733                             <rank>species</rank>
3734                           </taxonomy>
3735                         </clade>
3736                       </clade>
3737                       <clade>
3738                         <name>Eimeria &amp; Toxoplasma</name>
3739                         <distribution>
3740                           <point geodetic_datum="?" alt_unit="?">
3741                             <lat>0</lat>
3742                             <long>0</long>
3743                             <alt>0</alt>
3744                           </point>
3745                         </distribution>
3746                         <reference doi="10.1093/molbev/msn213">
3747                           <desc>The Apicomplexan Whole-Genome Phylogeny: An Analysis of Incongruence among Gene Trees</desc>
3748                         </reference>
3749                         <reference>
3750                         </reference>
3751                         <clade>
3752                           <name>TOXGO</name>
3753                           <taxonomy>
3754                             <id provider="uniprot">5811</id>
3755                             <code>TOXGO</code>
3756                             <scientific_name>Toxoplasma gondii</scientific_name>
3757                             <rank>species</rank>
3758                           </taxonomy>
3759                         </clade>
3760                         <clade>
3761                           <taxonomy>
3762                             <id provider="uniprot">5802</id>
3763                             <code>EIMTE</code>
3764                             <scientific_name>Eimeria tenella</scientific_name>
3765                             <common_name>Coccidian parasite</common_name>
3766                             <rank>species</rank>
3767                             <uri>http://www.k-state.edu/parasitology/625tutorials/FIGtenella.jpg</uri>
3768                           </taxonomy>
3769                         </clade>
3770                       </clade>
3771                     </clade>
3772                   </clade>
3773                   <clade>
3774                     <taxonomy>
3775                       <id provider="uniprot">6020</id>
3776                       <scientific_name>Oligohymenophorea</scientific_name>
3777                       <rank>class</rank>
3778                     </taxonomy>
3779                     <clade>
3780                       <name>TETTH</name>
3781                       <taxonomy>
3782                         <id provider="uniprot">5911</id>
3783                         <code>TETTH</code>
3784                         <scientific_name>Tetrahymena thermophila</scientific_name>
3785                         <rank>species</rank>
3786                       </taxonomy>
3787                     </clade>
3788                     <clade>
3789                       <name>PARTE</name>
3790                       <taxonomy>
3791                         <id provider="uniprot">5888</id>
3792                         <code>PARTE</code>
3793                         <scientific_name>Paramecium tetraurelia</scientific_name>
3794                         <rank>species</rank>
3795                       </taxonomy>
3796                     </clade>
3797                   </clade>
3798                 </clade>
3799                 <clade>
3800                   <name>Heterokonta</name>
3801                   <taxonomy>
3802                     <id provider="uniprot">33634</id>
3803                     <scientific_name>stramenopiles</scientific_name>
3804                     <synonym>Chromophyta</synonym>
3805                   </taxonomy>
3806                   <clade>
3807                     <name>Pelagophyceae_Bacillariophyta</name>
3808                     <clade>
3809                       <taxonomy>
3810                         <id provider="uniprot">2836</id>
3811                         <scientific_name>Bacillariophyta</scientific_name>
3812                         <common_name>diatoms</common_name>
3813                         <rank>phylum</rank>
3814                       </taxonomy>
3815                       <clade>
3816                         <taxonomy>
3817                           <id provider="uniprot">33850</id>
3818                           <scientific_name>Bacillariophycidae</scientific_name>
3819                         </taxonomy>
3820                         <clade>
3821                           <name>PHATR</name>
3822                           <taxonomy>
3823                             <id provider="eol">912693</id>
3824                             <code>PHATR</code>
3825                             <scientific_name>Phaeodactylum tricornutum</scientific_name>
3826                             <authority>Bohlin</authority>
3827                             <rank>species</rank>
3828                           </taxonomy>
3829                         </clade>
3830                         <clade>
3831                           <name>FRACY</name>
3832                           <taxonomy>
3833                             <id provider="eol">911694</id>
3834                             <code>FRACY</code>
3835                             <scientific_name>Fragilariopsis cylindrus</scientific_name>
3836                             <authority>Krieger</authority>
3837                             <synonym>Nitzschia cylindrus</synonym>
3838                             <rank>species</rank>
3839                           </taxonomy>
3840                         </clade>
3841                       </clade>
3842                       <clade>
3843                         <name>THAPS</name>
3844                         <taxonomy>
3845                           <id provider="eol">916868</id>
3846                           <code>THAPS</code>
3847                           <scientific_name>Thalassiosira pseudonana</scientific_name>
3848                           <authority>Hasle &amp; Heimdal</authority>
3849                           <common_name>Marine diatom</common_name>
3850                           <synonym>Cyclotella nana</synonym>
3851                           <rank>species</rank>
3852                         </taxonomy>
3853                       </clade>
3854                     </clade>
3855                     <clade>
3856                       <name>AURAN</name>
3857                       <taxonomy>
3858                         <id provider="eol">912461</id>
3859                         <code>AURAN</code>
3860                         <scientific_name>Aureococcus anophagefferens</scientific_name>
3861                         <authority>Hargraves &amp; Sieburth</authority>
3862                         <rank>species</rank>
3863                       </taxonomy>
3864                     </clade>
3865                   </clade>
3866                   <clade>
3867                     <taxonomy>
3868                       <id provider="uniprot">4783</id>
3869                       <scientific_name>Phytophthora</scientific_name>
3870                       <rank>genus</rank>
3871                     </taxonomy>
3872                     <clade>
3873                       <name>PHYIN</name>
3874                       <taxonomy>
3875                         <id provider="uniprot">4787</id>
3876                         <code>PHYIN</code>
3877                         <scientific_name>Phytophthora infestans</scientific_name>
3878                         <common_name>Potato late blight fungus</common_name>
3879                         <rank>species</rank>
3880                       </taxonomy>
3881                     </clade>
3882                     <clade>
3883                       <name>PHYRM</name>
3884                       <taxonomy>
3885                         <id provider="uniprot">164328</id>
3886                         <code>PHYRM</code>
3887                         <scientific_name>Phytophthora ramorum</scientific_name>
3888                         <common_name>Sudden oak death agent</common_name>
3889                         <rank>species</rank>
3890                       </taxonomy>
3891                     </clade>
3892                     <clade>
3893                       <name>PHYSO</name>
3894                       <taxonomy>
3895                         <id provider="uniprot">67593</id>
3896                         <scientific_name>Phytophthora sojae</scientific_name>
3897                         <rank>species</rank>
3898                       </taxonomy>
3899                     </clade>
3900                   </clade>
3901                 </clade>
3902               </clade>
3903               <clade>
3904                 <name>EMIHU</name>
3905                 <taxonomy>
3906                   <id provider="uniprot">2903</id>
3907                   <code>EMIHU</code>
3908                   <scientific_name>Emiliania huxleyi</scientific_name>
3909                   <rank>species</rank>
3910                 </taxonomy>
3911               </clade>
3912             </clade>
3913           </clade>
3914           <clade>
3915             <name>Excavata</name>
3916             <reference doi="10.1038/nature04546">
3917             </reference>
3918             <clade>
3919               <name>Kinetoplastida_Heterolobosea</name>
3920               <clade>
3921                 <taxonomy>
3922                   <id provider="uniprot">5654</id>
3923                   <scientific_name>Trypanosomatidae</scientific_name>
3924                   <rank>family</rank>
3925                 </taxonomy>
3926                 <clade>
3927                   <name>LEIMA</name>
3928                   <taxonomy>
3929                     <id provider="uniprot">5664</id>
3930                     <code>LEIMA</code>
3931                     <scientific_name>Leishmania major</scientific_name>
3932                     <rank>species</rank>
3933                   </taxonomy>
3934                 </clade>
3935                 <clade>
3936                   <name>TRYBB</name>
3937                   <taxonomy>
3938                     <id provider="uniprot">5702</id>
3939                     <code>TRYBB</code>
3940                     <scientific_name>Trypanosoma brucei brucei</scientific_name>
3941                     <rank>subspecies</rank>
3942                   </taxonomy>
3943                 </clade>
3944               </clade>
3945               <clade>
3946                 <name>NAEGR</name>
3947                 <taxonomy>
3948                   <id provider="uniprot">5762</id>
3949                   <code>NAEGR</code>
3950                   <scientific_name>Naegleria gruberi</scientific_name>
3951                   <common_name>Amoeba</common_name>
3952                   <rank>species</rank>
3953                 </taxonomy>
3954               </clade>
3955             </clade>
3956             <clade>
3957               <name>Metamonada</name>
3958               <clade>
3959                 <name>GIALA</name>
3960                 <taxonomy>
3961                   <id provider="uniprot">5741</id>
3962                   <code>GIALA</code>
3963                   <scientific_name>Giardia lamblia</scientific_name>
3964                   <synonym>Giardia intestinalis</synonym>
3965                   <synonym>Giardia lamblia</synonym>
3966                   <rank>species</rank>
3967                 </taxonomy>
3968               </clade>
3969               <clade>
3970                 <name>TRIVA</name>
3971                 <taxonomy>
3972                   <id provider="uniprot">5722</id>
3973                   <code>TRIVA</code>
3974                   <scientific_name>Trichomonas vaginalis</scientific_name>
3975                   <rank>species</rank>
3976                 </taxonomy>
3977               </clade>
3978             </clade>
3979           </clade>
3980         </clade>
3981       </clade>
3982       <clade>
3983         <taxonomy>
3984           <id provider="uniprot">2157</id>
3985           <scientific_name>Archaea</scientific_name>
3986           <rank>superkingdom</rank>
3987         </taxonomy>
3988         <clade>
3989           <name>a5</name>
3990           <clade>
3991             <name>a1</name>
3992             <clade>
3993               <taxonomy>
3994                 <id provider="uniprot">183924</id>
3995                 <scientific_name>Thermoprotei</scientific_name>
3996                 <rank>class</rank>
3997               </taxonomy>
3998               <clade>
3999                 <name>AERPE</name>
4000                 <taxonomy>
4001                   <id provider="uniprot">272557</id>
4002                   <code>AERPE</code>
4003                   <scientific_name>Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)</scientific_name>
4004                 </taxonomy>
4005               </clade>
4006               <clade>
4007                 <name>SULSO</name>
4008                 <taxonomy>
4009                   <id provider="uniprot">273057</id>
4010                   <code>SULSO</code>
4011                   <scientific_name>Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)</scientific_name>
4012                 </taxonomy>
4013               </clade>
4014             </clade>
4015             <clade>
4016               <taxonomy>
4017                 <id provider="uniprot">2302</id>
4018                 <scientific_name>Thermoplasma</scientific_name>
4019                 <rank>genus</rank>
4020               </taxonomy>
4021               <clade>
4022                 <name>THEVO</name>
4023                 <taxonomy>
4024                   <id provider="uniprot">273116</id>
4025                   <code>THEVO</code>
4026                   <scientific_name>Thermoplasma volcanium (strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1)</scientific_name>
4027                 </taxonomy>
4028               </clade>
4029               <clade>
4030                 <name>THEAC</name>
4031                 <taxonomy>
4032                   <id provider="uniprot">273075</id>
4033                   <code>THEAC</code>
4034                   <scientific_name>Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)</scientific_name>
4035                 </taxonomy>
4036               </clade>
4037             </clade>
4038           </clade>
4039           <clade>
4040             <taxonomy>
4041               <id provider="uniprot">28890</id>
4042               <scientific_name>Euryarchaeota</scientific_name>
4043               <rank>phylum</rank>
4044             </taxonomy>
4045             <clade>
4046               <name>a4</name>
4047               <clade>
4048                 <name>a3</name>
4049                 <clade>
4050                   <name>a2</name>
4051                   <clade>
4052                     <name>METKA</name>
4053                     <taxonomy>
4054                       <id provider="uniprot">190192</id>
4055                       <code>METKA</code>
4056                       <scientific_name>Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938)</scientific_name>
4057                     </taxonomy>
4058                   </clade>
4059                   <clade>
4060                     <name>METJA</name>
4061                     <taxonomy>
4062                       <id provider="uniprot">243232</id>
4063                       <code>METJA</code>
4064                       <scientific_name>Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)</scientific_name>
4065                       <synonym>Methanococcus jannaschii</synonym>
4066                     </taxonomy>
4067                   </clade>
4068                 </clade>
4069                 <clade>
4070                   <name>METTH</name>
4071                   <taxonomy>
4072                     <id provider="uniprot">187420</id>
4073                     <code>METTH</code>
4074                     <scientific_name>Methanobacterium thermoautotrophicum (strain Delta H)</scientific_name>
4075                   </taxonomy>
4076                 </clade>
4077               </clade>
4078               <clade>
4079                 <name>ARCFU</name>
4080                 <taxonomy>
4081                   <id provider="uniprot">224325</id>
4082                   <code>ARCFU</code>
4083                   <scientific_name>Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)</scientific_name>
4084                 </taxonomy>
4085               </clade>
4086             </clade>
4087             <clade>
4088               <taxonomy>
4089                 <id provider="uniprot">2260</id>
4090                 <scientific_name>Pyrococcus</scientific_name>
4091                 <rank>genus</rank>
4092               </taxonomy>
4093               <clade>
4094                 <name>PYRAB</name>
4095                 <taxonomy>
4096                   <id provider="uniprot">272844</id>
4097                   <code>PYRAB</code>
4098                   <scientific_name>Pyrococcus abyssi (strain GE5 / Orsay)</scientific_name>
4099                 </taxonomy>
4100               </clade>
4101               <clade>
4102                 <name>PYRHO</name>
4103                 <taxonomy>
4104                   <id provider="uniprot">70601</id>
4105                   <code>PYRHO</code>
4106                   <scientific_name>Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)</scientific_name>
4107                 </taxonomy>
4108               </clade>
4109             </clade>
4110           </clade>
4111         </clade>
4112         <clade>
4113           <name>HALSP</name>
4114           <taxonomy>
4115             <id provider="uniprot">2243</id>
4116             <code>HALSP</code>
4117             <scientific_name>Halobacterium sp.</scientific_name>
4118             <rank>species</rank>
4119           </taxonomy>
4120         </clade>
4121       </clade>
4122     </clade>
4123     <clade>
4124       <taxonomy>
4125         <id provider="uniprot">2</id>
4126         <scientific_name>Bacteria</scientific_name>
4127         <rank>superkingdom</rank>
4128       </taxonomy>
4129       <clade>
4130         <name>b9</name>
4131         <clade>
4132           <name>b2</name>
4133           <clade>
4134             <name>b1</name>
4135             <clade>
4136               <taxonomy>
4137                 <id provider="uniprot">213849</id>
4138                 <scientific_name>Campylobacterales</scientific_name>
4139                 <rank>order</rank>
4140               </taxonomy>
4141               <clade>
4142                 <name>HELPH</name>
4143                 <taxonomy>
4144                   <id provider="uniprot">357544</id>
4145                   <code>HELPH</code>
4146                   <scientific_name>Helicobacter pylori (strain HPAG1)</scientific_name>
4147                   <synonym>Campylobacter pylori</synonym>
4148                   <rank>species</rank>
4149                 </taxonomy>
4150               </clade>
4151               <clade>
4152                 <name>CAMJE</name>
4153                 <taxonomy>
4154                   <id provider="uniprot">197</id>
4155                   <code>CAMJE</code>
4156                   <scientific_name>Campylobacter jejuni</scientific_name>
4157                   <rank>species</rank>
4158                 </taxonomy>
4159               </clade>
4160             </clade>
4161             <clade>
4162               <name>AQUAE</name>
4163               <taxonomy>
4164                 <id provider="uniprot">63363</id>
4165                 <code>AQUAE</code>
4166                 <scientific_name>Aquifex aeolicus</scientific_name>
4167                 <rank>species</rank>
4168               </taxonomy>
4169             </clade>
4170           </clade>
4171           <clade>
4172             <name>b3</name>
4173             <clade>
4174               <taxonomy>
4175                 <id provider="uniprot">2092</id>
4176                 <scientific_name>Mycoplasmataceae</scientific_name>
4177                 <rank>family</rank>
4178               </taxonomy>
4179               <clade>
4180                 <taxonomy>
4181                   <scientific_name>Mycoplasma</scientific_name>
4182                 </taxonomy>
4183                 <clade>
4184                   <name>MYCGE</name>
4185                   <taxonomy>
4186                     <id provider="uniprot">243273</id>
4187                     <code>MYCGE</code>
4188                     <scientific_name>Mycoplasma genitalium (strain ATCC 33530 / G-37 / NCTC 10195)</scientific_name>
4189                   </taxonomy>
4190                 </clade>
4191                 <clade>
4192                   <name>MYCPN</name>
4193                   <taxonomy>
4194                     <id provider="uniprot">272634</id>
4195                     <code>MYCPN</code>
4196                     <scientific_name>Mycoplasma pneumoniae (strain ATCC 29342 / M129)</scientific_name>
4197                   </taxonomy>
4198                 </clade>
4199               </clade>
4200               <clade>
4201                 <name>UREPA</name>
4202                 <taxonomy>
4203                   <id provider="uniprot">134821</id>
4204                   <code>UREPA</code>
4205                   <scientific_name>Ureaplasma parvum</scientific_name>
4206                   <synonym>Ureaplasma urealyticum biotype 1</synonym>
4207                   <rank>species</rank>
4208                 </taxonomy>
4209               </clade>
4210             </clade>
4211             <clade>
4212               <name>BORBU</name>
4213               <taxonomy>
4214                 <id provider="uniprot">139</id>
4215                 <code>BORBU</code>
4216                 <scientific_name>Borrelia burgdorferi</scientific_name>
4217                 <common_name>Lyme disease spirochete</common_name>
4218                 <rank>species</rank>
4219               </taxonomy>
4220             </clade>
4221           </clade>
4222         </clade>
4223         <clade>
4224           <name>b8</name>
4225           <clade>
4226             <name>b6</name>
4227             <clade>
4228               <name>b5</name>
4229               <clade>
4230                 <name>b4</name>
4231                 <clade>
4232                   <taxonomy>
4233                     <id provider="uniprot">1117</id>
4234                     <scientific_name>Cyanobacteria</scientific_name>
4235                     <rank>phylum</rank>
4236                   </taxonomy>
4237                   <clade>
4238                     <name>NOSS7</name>
4239                     <taxonomy>
4240                       <id provider="uniprot">28072</id>
4241                       <code>NOSS7</code>
4242                       <scientific_name>Nostoc sp. (strain PCC 7524)</scientific_name>
4243                       <rank>species</rank>
4244                     </taxonomy>
4245                   </clade>
4246                   <clade>
4247                     <name>SYNY3</name>
4248                     <taxonomy>
4249                       <id provider="uniprot">1148</id>
4250                       <code>SYNY3</code>
4251                       <scientific_name>Synechocystis sp. (strain ATCC 27184 / PCC 6803 / N-1)</scientific_name>
4252                       <rank>species</rank>
4253                     </taxonomy>
4254                   </clade>
4255                 </clade>
4256                 <clade>
4257                   <name>DEIRA</name>
4258                   <taxonomy>
4259                     <id provider="uniprot">1299</id>
4260                     <code>DEIRA</code>
4261                     <scientific_name>Deinococcus radiodurans</scientific_name>
4262                     <rank>species</rank>
4263                   </taxonomy>
4264                 </clade>
4265               </clade>
4266               <clade>
4267                 <name>MYCTU</name>
4268                 <taxonomy>
4269                   <id provider="uniprot">1773</id>
4270                   <code>MYCTU</code>
4271                   <scientific_name>Mycobacterium tuberculosis</scientific_name>
4272                   <rank>species</rank>
4273                 </taxonomy>
4274               </clade>
4275             </clade>
4276             <clade>
4277               <taxonomy>
4278                 <id provider="uniprot">1236</id>
4279                 <scientific_name>Gammaproteobacteria</scientific_name>
4280                 <rank>class</rank>
4281               </taxonomy>
4282               <clade>
4283                 <name>b7</name>
4284                 <clade>
4285                   <taxonomy>
4286                     <id provider="uniprot">543</id>
4287                     <scientific_name>Enterobacteriaceae</scientific_name>
4288                     <rank>family</rank>
4289                   </taxonomy>
4290                   <clade>
4291                     <name>ECOLI</name>
4292                     <taxonomy>
4293                       <id provider="uniprot">83333</id>
4294                       <code>ECOLI</code>
4295                       <scientific_name>Escherichia coli (strain K12)</scientific_name>
4296                     </taxonomy>
4297                   </clade>
4298                   <clade>
4299                     <name>SALTY</name>
4300                     <taxonomy>
4301                       <id provider="uniprot">90371</id>
4302                       <code>SALTY</code>
4303                       <scientific_name>Salmonella typhimurium</scientific_name>
4304                     </taxonomy>
4305                   </clade>
4306                 </clade>
4307                 <clade>
4308                   <name>VIBCH</name>
4309                   <taxonomy>
4310                     <id provider="uniprot">666</id>
4311                     <code>VIBCH</code>
4312                     <scientific_name>Vibrio cholerae</scientific_name>
4313                     <rank>species</rank>
4314                   </taxonomy>
4315                 </clade>
4316               </clade>
4317               <clade>
4318                 <name>HAEIN</name>
4319                 <taxonomy>
4320                   <id provider="uniprot">71421</id>
4321                   <code>HAEIN</code>
4322                   <scientific_name>Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)</scientific_name>
4323                 </taxonomy>
4324               </clade>
4325             </clade>
4326           </clade>
4327           <clade>
4328             <taxonomy>
4329               <id provider="uniprot">1239</id>
4330               <scientific_name>Firmicutes</scientific_name>
4331               <rank>phylum</rank>
4332             </taxonomy>
4333             <clade>
4334               <taxonomy>
4335                 <id provider="uniprot">91061</id>
4336                 <scientific_name>Bacilli</scientific_name>
4337                 <synonym>Bacillus/Lactobacillus/Streptococcus group</synonym>
4338                 <rank>class</rank>
4339               </taxonomy>
4340               <clade>
4341                 <name>STRPN</name>
4342                 <taxonomy>
4343                   <id provider="uniprot">1313</id>
4344                   <code>STRPN</code>
4345                   <scientific_name>Streptococcus pneumoniae</scientific_name>
4346                   <rank>species</rank>
4347                 </taxonomy>
4348               </clade>
4349               <clade>
4350                 <name>BACSU</name>
4351                 <taxonomy>
4352                   <id provider="uniprot">1423</id>
4353                   <code>BACSU</code>
4354                   <scientific_name>Bacillus subtilis</scientific_name>
4355                   <rank>species</rank>
4356                 </taxonomy>
4357               </clade>
4358             </clade>
4359             <clade>
4360               <name>EUBR3</name>
4361               <taxonomy>
4362                 <id provider="uniprot">515619</id>
4363                 <code>EUBR3</code>
4364                 <scientific_name>Eubacterium rectale (strain ATCC 33656 / VPI 0990)</scientific_name>
4365               </taxonomy>
4366             </clade>
4367           </clade>
4368         </clade>
4369         <clade>
4370           <name>BACTN</name>
4371           <taxonomy>
4372             <id provider="uniprot">818</id>
4373             <code>BACTN</code>
4374             <scientific_name>Bacteroides thetaiotaomicron</scientific_name>
4375             <rank>species</rank>
4376           </taxonomy>
4377         </clade>
4378       </clade>
4379       <clade>
4380         <name>THEMA</name>
4381         <taxonomy>
4382           <id provider="uniprot">2336</id>
4383           <code>THEMA</code>
4384           <scientific_name>Thermotoga maritima</scientific_name>
4385           <rank>species</rank>
4386         </taxonomy>
4387       </clade>
4388     </clade>
4389   </clade>
4390 </phylogeny>
4391 </phyloxml>