1 RIO - Phylogenomic Protein Function Analysis
2 ----------------------------------------------------------------
5 RIO contains modified versions of programs written by others:
8 (Strimmer, K., and A. von Haeseler. 1996. Quartet puzzling: A quartet maximum
9 likelihood method for reconstructing tree topologies. Mol. Biol. Evol. 13: 964-969.)
13 (Felsenstein, J. 1993. PHYLIP (Phylogeny Inference Package) version 3.5c.
14 Distributed by the author.
15 Department of Genetics, University of Washington, Seattle.)
21 1. RIO uses modifications of these programs, the original versions were
24 TREE-PUZZLE: Heiko A. Schmidt, Korbinian Strimmer, Martin Vingron, Arndt von Haeseler
26 PHYLIP: Joseph Felsenstein, see also http://evolution.genetics.washington.edu/phylip/credits.html
29 2. The programs in the RIO distribution have been modified specifically
30 to work within RIO and cannot be used for any other purpose.
33 3. I am responsible for any accidentally introduced errors.
36 4. The original can be downloaded from the following sites:
37 TREE-PUZZLE: http://www.tree-puzzle.de/
38 PHYLIP: http://evolution.genetics.washington.edu/phylip.html
41 RIO also contains hmmer (version 2.2g).
42 hmmer can be downloaded at: http://hmmer.wustl.edu/
46 Christian Zmasek, 03/09/02