forester/archive/RIO/others/hmmer/squid/Formats/phylip

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   2 GLB2_MORMR...PIVD..SGSVSPLSDAEKNKIRAAW.DIVYKNYEKNGVDILVKFFTG
   3 GLBZ_CHITHMKFIILALCVAAASALSGDQIGLVQST.YGKVKG....DSVGILYAVFKA
   4 HBA2_BOSMU...V...........LSAADKGNVKAAW.GKVGGHAAEYGAEALERMFLS
   5 HBA2_GALCR...V...........LSPTDKSNVKAAW.EKVGAHAGDYGAEALERMFLS
   6 HBA4_SALIR...S...........LSAKDKANVKAIW.GKILPKSDEIGEQALSRMLVV
   7 HBAD_CHLME...M...........LTADDKKLLTQLW.EKVAGHQEEFGSEALQRMFLT
   8 HBAD_PASMO...M...........LTAEDKKLIQQIW.GKLGGAEEEIGADALWRMFHS
   9 HBAZ_HORSE...S...........LTKAERTMVVSIW.GKISMQADAVGTEALQRLFSS
  10 HBA_AILME ...V...........LSPADKTNVKATW.DKIGGHAGEYGGEALERTFAS
  11 HBA_ANSSE ...V...........LSAADKGNVKTVF.GKIGGHAEEYGAETLQRMFQT
  12 HBA_COLLI ...V...........LSANDKSNVKAVF.AKIGGQAGDLGGEALERLFIT
  13 HBA_ERIEU ...V...........LSATDKANVKTFW.GKLGGHGGEYGGEALDRMFQA
  14 HBA_FRAPO ...V...........LSAADKNNVKGIF.GKISSHAEDYGAEALERMFIT
  15 HBA_MACFA ...V...........LSPADKTNVKAAW.GKVGGHAGEYGAEALERMFLS
  16 HBA_MACSI ...V...........LSPADKTNVKDAW.GKVGGHAGEYGAEALERMFLS
  17 HBA_MESAU ...V...........LSAKDKTNISEAW.GKIGGHAGEYGAEALERMFFV
  18 HBA_PAGLA ...V...........LSSADKNNIKATW.DKIGSHAGEYGAEALERTFIS
  19 HBA_PHACO ...V...........LSAADKNNVKGIF.TKIAGHAEEYGAEALERMFIT
  20 HBA_PONPY ...V...........LSPADKTNVKTAW.GKVGAHAGDYGAEALERMFLS
  21 HBA_PROLO ...V...........LSPADKANIKATW.DKIGGHAGEYGGEALERTFAS
  22 HBA_TRIOC ...V...........LSANDKTNVKTVF.TKITGHAEDYGAETLERMFIT
  23 HBB1_VAREX...V..........HWTAEEKQLICSLW.GKI..DVGLIGGETLAGLLVI
  24 HBB2_TRICR...V..........HLTAEDRKEIAAIL.GKV..NVDSLGGQCLARLIVV
  25 HBB2_XENTR...V..........HWTAEEKATIASVW.GKV..DIEQDGHDALSRLLVV
  26 HBBL_RANCA...V..........HWTAEEKAVINSVW.QKV..DVEQDGHEALTRLFIV
  27 HBB_CALAR ...V..........HLTGEEKSAVTALW.GKV..NVDEVGGEALGRLLVV
  28 HBB_COLLI ...V..........HWSAEEKQLITSIW.GKV..NVADCGAEALARLLIV
  29 HBB_EQUHE ...V..........QLSGEEKAAVLALW.DKV..NEEEVGGEALGRLLVV
  30 HBB_LARRI ...V..........HWSAEEKQLITGLW.GKV..NVADCGAEALARLLIV
  31 HBB_MANSP ...V..........HLTPEEKTAVTTLW.GKV..NVDEVGGEALGRLLVV
  32 HBB_ORNAN ...V..........HLSGGEKSAVTNLW.GKV..NINELGGEALGRLLVV
  33 HBB_RABIT ...V..........HLSSEEKSAVTALW.GKV..NVEEVGGEALGRLLVV
  34 HBB_SPECI ...V..........HLSDGEKNAISTAW.GKV..HAAEVGAEALGRLLVV
  35 HBB_SPETO ...V..........HLTDGEKNAISTAW.GKV..NAAEIGAEALGRLLVV
  36 HBB_SUNMU ...V..........HLSGEEKACVTGLW.GKV..NEDEVGAEALGRLLVV
  37 HBB_TACAC ...V..........HLSGSEKTAVTNLW.GHV..NVNELGGEALGRLLVV
  38 HBB_TRIIN ...V..........HLTPEEKALVIGLW.AKV..NVKEYGGEALGRLLVV
  39 HBB_TUPGL ...V..........HLSGEEKAAVTGLW.GKV..DLEKVGGQSLGSLLIV
  40 HBB_URSMA ...V..........HLTGEEKSLVTGLW.GKV..NVDEVGGEALGRLLVV
  41 HBE_PONPY ...V..........HFTAEEKAAVTSLW.SKM..NVEEAGGEALGRLLVV
  42 HBF1_URECA..............GLTTAQIKAIQDHWFLNIKGCLQAAADSIFFKYLTA
  43 LGB1_PEA  GFTDKQEALVNSSSE.FKQNLPGYSILFYTIVLEKAP..AAKGL......
  44 LGB1_VICFAGFTEKQEALVNSSSQLFKQNPSNYSVLFYTIILQKAP..TAKAM......
  45 MYG_ESCGI ...V...........LSDAEWQLVLNIW.AKVEADVAGHGQDILIRLFKG
  46 MYG_HORSE ...G...........LSDGEWQQVLNVW.GKVEADIAGHGQEVLIRLFTG
  47 MYG_LYCPI ...G...........LSDGEWQIVLNIW.GKVETDLAGHGQEVLIRLFKN
  48 MYG_MOUSE ...G...........LSDGEWQLVLNVW.GKVEADLAGHGQEVLIGLFKT
  49 MYG_MUSAN ..................VDWEKVNSVW.SAVESDLTAIGQNILLRLFEQ
  50 MYG_PROGU ...G...........LSDGEWQLVLNVW.GKVEGDLSGHGQEVLIRLFKG
  51 MYG_SAISC ...G...........LSDGEWQLVLNIW.GKVEADIPSHGQEVLISLFKG
  52
  53 TPAAQAFFPKFKGLTTADALKKSSDVRWHAERIINAVNDAVKSMDDTEKM
  54 DPTIQAAFPQFVGK.DLDAIKGGAEFSTHAGRIVGFLGGVIDDLP...NI
  55 FPTTKTYFPHFD.LSH.....GSAQVKGHGAKVAAALTKAVGHLDD...L
  56 FPTTKTYFPHFD.LSH.....GSTQVKGHGKKVADALTNAVLHVDD...M
  57 YPQTKAYFSHWASVAP.....GSAPVKKHGITIMNQIDDCVGHMDD...L
  58 YPQTKTYFPHFD.LHP.....GSEQVRGHGKKVAAALGNAVKSLDN...L
  59 YPSTKTYFPHFD.LSQ.....GSDQIRGHGKKVVAALSNAIKNLDN...L
  60 YPQTKTYFPHFD.LHE.....GSPQLRAHGSKVAAAVGDAVKSIDN...V
  61 FPTTKTYFPHFD.LSP.....GSAQVKAHGKKVADALTTAVGHLDD...L
  62 FPQTKTYFPHFD.LQP.....GSAQIKAHGKKVAAALVEAANHIDD...I
  63 YPQTKTYFPHFD.LSH.....GSAQIKGHGKKVAEALVEAANHIDD...I
  64 HPTTKTYFPHFD.LNP.....GSAQVKGHGKKVADALTTAVNNLDD...V
  65 YPSTKTYFPHFD.LSH.....GSAQVKGHGKKVVAALIEAANHIDD...I
  66 FPTTKTYFPHFD.LSH.....GSAQVKGHGKKVADALTLAVGHVDD...M
  67 FPTTKTYFPHFD.LSH.....GSAQVKGHGKKVADALTLAVGHVDD...M
  68 YPTTKTYFPHFD.VSH.....GSAQVKGHGKKVADALTNAVGHLDD...L
  69 FPTTKTYFPHFD.LSH.....GSAQVKAHGKKVADALTLAVGHLED...L
  70 YPSTKTYFPHFD.LSH.....GSAQIKGHGKKVVAALIEAVNHIDD...I
  71 FPTTKTYFPHFD.LSH.....GSAQVKDHGKKVADALTNAVAHVDD...M
  72 FPTTKTYFPHFD.LSP.....GSAQVKAHGKKVADALTLAVGHLDD...L
  73 YPPTKTYFPHFD.LHH.....GSAQIKAHGKKVVGALIEAVNHIDD...I
  74 YPWTQRQFSHFGNLSSPTAIAGNPRVKAHGKKVLTSFGDAIKNLDN...I
  75 NPWSRRYFHDFGDLSSCDAICRNPKVLAHGAKVMRSIVEATKHLDN...L
  76 YPWTQRYFSSFGNLSNVSAVSGNVKVKAHGNKVLSAVGSAIQHLDD...V
  77 YPWTQRYFSTFGDLSSPAAIAGNPKVHAHGKKILGAIDNAIHNLDD...V
  78 YPWTQRFFESFGDLSTPDAVMNNPKVKAHGKKVLGAFSDGLTHLDN...L
  79 YPWTQRFFSSFGNLSSATAISGNPNVKAHGKKVLTSFGDAVKNLDN...I
  80 YPWTQRFFDSFGDLSNPAAVMGNPKVKAHGKKVLHSFGEGVHHLDN...L
  81 YPWTQRFFASFGNLSSPTAINGNPMVRAHGKKVLTSFGEAVKNLDN...I
  82 YPWTQRFFDSFGDLSSPDAVMGNPKVKAHGKKVLGAFSDGLNHLDN...L
  83 YPWTQRFFEAFGDLSSAGAVMGNPKVKAHGAKVLTSFGDALKNLDD...L
  84 YPWTQRFFESFGDLSSANAVMNNPKVKAHGKKVLAAFSEGLSHLDN...L
  85 YPWTQRFFDSFGDLSSASAVMGNAKVKAHGKKVIDSFSNGLKHLDN...L
  86 YPWTQRFFDSFGDLSSASAVMGNAKVKAHGKKVIDSFSNGLKHLDN...L
  87 YPWTQRFFDSFGDLSSASAVMGNPKVKAHGKKVLHSLGEGVANLDN...L
  88 YPWTQRFFESFGDLSSADAVMGNAKVKAHGAKVLTSFGDALKNLDN...L
  89 YPWTQRFFEHFGDLSSASAIMNNPKVKAHGEKVFTSFGDGLKHLED...L
  90 YPWTQRFFDSFGDLSSPSAVMSNPKVKAHGKKVLTSFSDGLNHLDN...L
  91 YPWTQRFFDSFGDLSSADAIMNNPKVKAHGKKVLNSFSDGLKNLDN...L
  92 YPWTQRFFDSFGNLSSPSAILGNPKVKAHGKKVLTSFGDAIKNMDN...L
  93 YPGDLAFFHKFSSV.PLYGLRSNPAYKAQTLTVINYLDKVVDALGG..NA
  94 ..........FSFLKDTAGVEDSPKLQAHAEQVFGLVRDSAAQLRTKGEV
  95 ..........FSFLKDSAGVVDSPKLGAHAEKVFGMVRDSAVQLRATGEV
  96 HPETLEKFDKFKHLKTEAEMKASEDLKKHGNTVLTALGGILKKKGH...H
  97 HPETLEKFDKFKHLKTEAEMKASEDLKKHGTVVLTALGGILKKKGH...H
  98 HPETLDKFDKFKHLKTEDEMKGSEDLKKHGNTVLTALGGILKKKGH...H
  99 HPETLDKFDKFKNLKSEEDMKGSEDLKKHGCTVLTALGTILKKKGQ...H
 100 YPESQNHFPKFKN.KSLGELKDTADIKAQADTVLSALGNIVKKKGS...H
 101 HPETLEKFDKFKHLKAEDEMRASEELKKHGTTVLTALGGILKKKGQ...H
 102 HPETLEKFDKFKHLKSEDEMKASEELKKHGTTVLTALGGILKKKGQ...H
 103
 104 SMKLQELSVKHAQSFYVDRQYFKVLAGII.........ADTTAPGDAGFE
 105 GKHVDALVATH.KPRGVTHAQFNNFRAAFIAYLKGHV..DYTAAVEAAWG
 106 PGALSELSDLHAHKLRVDPVNFKLLSHSLLVTLASHLPSDFTPAVHASLD
 107 PSALSALSDLHAHKLRVDPVNFKLLRHCLLVTLACHHPAEFTPAVHASLD
 108 FGFLTKLSELHATKLRVDPTNFKILAHNLIVVIAAYFPAEFTPEIHLSVD
 109 SQALSELSNLHAYNLRVDPANFKLLAQCFQVVLATHLGKDYSPEMHAAFD
 110 SQALSELSNLHAYNLRVDPVNFKFLSQCLQVSLATRLGKEYSPEVHSAVD
 111 AGALAKLSELHAYILRVDPVNFKFLSHCLLVTLASRLPADFTADAHAAWD
 112 PGALSALSDLHAHKLRVDPVNFKLLSHCLLVTLASHHPAEFTPAVHASLD
 113 AGALSKLSDLHAQKLRVDPVNFKFLGHCFLVVLAIHHPSLLTPEVHASMD
 114 AGALSKLSDLHAQKLRVDPVNFKLLGHCFLVVVAVHFPSLLTPEVHASLD
 115 PGALSALSDLHAHKLRVDPVNFKLLSHCLLVTLALHHPADFTPAVHASLD
 116 AGTLSKLSDLHAHKLRVDPVNFKLLGQCFLVVVAIHHPSALTPEVHASLD
 117 PQALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTPAVHASLD
 118 PQALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTPAVHASLD
 119 PGALSALSDLHAHKLRVDPVNFKLLSHCLLVTLANHHPADFTPAVHASLD
 120 PNALSALSDLHAYKLRVDPVNFKLLSHCLLVTLACHHPAEFTPAVHSALD
 121 TGTLSKLSDLHAHKLRVDPVNFKLLGQCFLVVVAIHHPSALTPEVHASLD
 122 PNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTPAVHASLD
 123 PGALSALSDLHAYKLRVDPVNFKLLSHCLLVTLACHHPAEFTPAVHASLD
 124 AGALSKLSDLHAQKLRVDPVNFKLLGQCFLVVVAIHHPSVLTPEVHASLD
 125 KDTFAKLSELHCDKLHVDPTNFKLLGNVLVIVLADHHGKEFTPAHHAAYQ
 126 REYYADLSVTHSLKFYVDPENFKLFSGIVIVCLALTLQTDFSCHKQLAFE
 127 KSHLKGLSKSHAEDLHVDPENFKRLADVLVIVLAAKLGSAFTPQVQAVWE
 128 KGTLHDLSEEHANELHVDPENFRRLGEVLIVVLGAKLGKAFSPQVQHVWE
 129 KGTFAHLSELHCDKLHVDPENFRLLGNVLVCVLAHHFGKEFTPVVQAAYQ
 130 KGTFAQLSELHCDKLHVDPENFRLLGDILVIILAAHFGKDFTPECQAAWQ
 131 KGTFAQLSELHCDKLHVDPENFRLLGNVLVVVLARHFGKDFTPELQASYQ
 132 KNTFAQLSELHCDKLHVDPENFRLLGDILIIVLAAHFAKDFTPDSQAAWQ
 133 KGTFAQLSELHCDKLHVDPENFKLLGNVLVCVLAHHFGKEFTPQVQAAYQ
 134 KGTFAKLSELHCDKLHVDPENFNRLGNVLIVVLARHFSKDFSPEVQAAWQ
 135 KGTFAKLSELHCDKLHVDPENFRLLGNVLVIVLSHHFGKEFTPQVQAAYQ
 136 KGTFASLSELHCDKLHVDPENFKLLGNMIVIVMAHHLGKDFTPEAQAAFQ
 137 KGTFASLSELHCDKLHVDPENFKLLGNMIVIVMAHHLGKDFTPEAQAAFQ
 138 KGTFAKLSELHCDKLHVDPENFRLLGNVLVVVLASKFGKEFTPPVQAAFQ
 139 KGTFAKLSELHCDKLHVDPENFNRLGNVLVVVLARHFSKEFTPEAQAAWQ
 140 KGAFAELSELHCDKLHVDPENFRLLGNVLVCVLARHFGKEFSPEAQAAYQ
 141 KGTFAKLSELHCDKLHVDPENFRLLGNVLVRVLACNFGPEFTPQVQAAFQ
 142 KGTFAKLSELHCDKLHVDPENFKLLGNVLVCVLAHHFGKEFTPQVQAAYQ
 143 KTTFAKLSELHCDKLHVDPENFKLLGNVMVIILATHFGKEFTPEVQAAWQ
 144 GALMKAKVPSH.DAMGITPKHFGQLLKLVGGVFQEEF..SADPTTVAAWG
 145 VLGNATLGAIHVQKGVTNP.HFVVVKEALLQTIKKASGNNWSEELNTAWE
 146 VLDGKD.GSIHIQKGVLDP.HFVVVKEALLKTIKEASGDKWSEELSAAWE
 147 EAELKPLAQSHATKHKIPIKYLEFISDAIIHVLHSRHPGDFGADAQAAMN
 148 EAELKPLAQSHATKHKIPIKYLEFISDAIIHVLHSKHPGNFGADAQGAMT
 149 EAELKPLAQSHATKHKIPVKYLEFISDAIIQVLQNKHSGDFHADTEAAMK
 150 AAEIQPLAQSHATKHKIPVKYLEFISEIIIEVLKKRHSGDFGADAQGAMS
 151 SQPVKALAATHITTHKIPPHYFTKITTIAVDVLSEMYPSEMNAQVQAAFS
 152 AAELAPLAQSHATKHKIPVKYLEFISEAIIQVLQSKHPGDFGADAQGAMS
 153 EAELKPLAQSHATKHKIPVKYLELISDAIVHVLQKKHPGDFGADAQGAMK
 154
 155 KLMSMICILLSSAY.......
 156 ATFDAFFGAVFAK.......M
 157 KFLANVSTVLTSKYR......
 158 KFMASVSTVLTSKYR......
 159 KFLQQLALALAEKYR......
 160 KFLSAVAAVLAEKYR......
 161 KFMSAVASVLAEKYR......
 162 KFLSIVSSVLTEKYR......
 163 KFFSAVSTVLTSKYR......
 164 KFLCAVATVLTAKYR......
 165 KFVLAVGTVLTAKYR......
 166 KFLATVATVLTSKYR......
 167 KFLCAVGNVLTAKYR......
 168 KFLASVSTVLTSKYR......
 169 KFLASVSTVLTSKYR......
 170 KFFASVSTVLTSKYR......
 171 KFFSAVSTVLTSKYR......
 172 KFLCAVGTVLTAKYR......
 173 KFLASVSTVLTSKYR......
 174 KFFTSVSTVLTSKYR......
 175 KFLCAVGNVLSAKYR......
 176 KLVNVVSHSLARRYH......
 177 KLMKGVSHALGHGY.......
 178 KLNATLVAALSHGYF......
 179 KFIAVLVDALSHSYH......
 180 KVVAGVANALAHKYH......
 181 KLVRVVAHALARKYH......
 182 KVVAGVANALAHKYH......
 183 KLVRVVAHALARKYH......
 184 KVVAGVANALAHKYH......
 185 KLVSGVAHALGHKYH......
 186 KVVAGVANALAHKYH......
 187 KVVAGVANALAHKYH......
 188 KVVAGVANALSHKYH......
 189 KVVAGVANALAHKYH......
 190 KLVSGVSHALAHKYH......
 191 KVVAGVANALAHKYH......
 192 KVVAGVANALAHKYH......
 193 KVVAGVANALAHKYH......
 194 KLVSAVAIALAHKYH......
 195 DAAGVLVAAM..........K
 196 VAYDGLATAIKKAMKT....A
 197 VAYDGLATAIK....A....A
 198 KALELFRKDIAAKYKELGFQG
 199 KALELFRNDIAAKYKELGFQG
 200 KALELFRNDIAAKYKELGFQG
 201 KALELFRNDIAAKYKELGFQG
 202 GAFKIICSDIEKEYKAANFQG
 203 KALELFRNDIAAKYKELGFQG
 204 KALELFRNDMAAKYKELGFQG