forester/archive/RIO/others/hmmer/testsuite/Makefile.in

   1 ################################################################
   2 # Makefile for HMMER testsuite
   3 # CVS $Id: Makefile.in,v 1.1.1.1 2005/03/22 08:34:49 cmzmasek Exp $
   4 ##########
   5 # HMMER - Biological sequence analysis with profile HMMs
   6 # Copyright (C) 1992-1999 Washington University School of Medicine
   7 # All Rights Reserved
   8 #
   9 #     This source code is distributed under the terms of the
  10 #     GNU General Public License. See the files COPYING and LICENSE
  11 #     for details.
  12 ###########
  13
  14 CC        = @CC@
  15 CFLAGS    = @CFLAGS@
  16 MDEFS     = @MDEFS@ @DEFS@
  17
  18 # Configuration for optional pthreads multiprocessor support
  19 #
  20 PTHREAD_LIBS   = @PTHREAD_LIBS@
  21 PTHREAD_CFLAGS = @PTHREAD_CFLAGS@
  22
  23 SHELL     = /bin/sh
  24 MYLIBS    = -lhmmer -lsquid
  25 LIBS      = @LIBS@ -lm
  26
  27 SHIVA = alignalign_test\
  28         evd_test\
  29         masks_test\
  30         parsingviterbi_test\
  31         tophits_test\
  32         trace_test\
  33         viterbi_exercise\
  34         weeviterbi_test
  35
  36 #######
  37 ## Targets defining how to make Shiva executables.
  38 #######
  39
  40 .c.o:
  41         $(CC) $(CFLAGS) $(PTHREAD_CFLAGS) $(MDEFS) -I../squid -I../src -c $<
  42
  43 all:    $(SHIVA)
  44
  45 $(SHIVA): @EXEC_DEPENDENCY@
  46         $(CC) $(CFLAGS) $(PTHREAD_CFLAGS) $(MDEFS) -o $@ -L../squid -L../src $@.o $(MYLIBS) $(PTHREAD_LIBS) $(LIBS)
  47
  48 #######
  49 ## `make check` actually runs the tests.
  50 #######
  51
  52 check: $(SHIVA)
  53         @echo
  54         @echo Running compiled Shiva exercises:
  55         @echo Warning: some tests may take several minutes to complete.
  56         @for shivatest in $(SHIVA); do\
  57            if ./$$shivatest; then\
  58               echo $$shivatest: ok;\
  59            else\
  60               echo $$shivatest: FAILED;\
  61            fi;\
  62         done
  63         @echo
  64         @echo Running scripted Shiva exercises:
  65         @echo Warning: This also may take several minutes.
  66         perl ./Optiontests.pl
  67         sh ./Exercises.sh
  68
  69 #######
  70 ## Miscellaneous
  71 #######
  72
  73 clean:
  74         -rm -f *.o *~ Makefile.bak core $(SHIVA) TAGS gmon.out
  75
  76 distclean:
  77         make clean
  78         -rm -f Makefile
  79
  80 TAGS:
  81         etags -t *.c *.h Makefile.in
  82
  83