forester/archive/RIO/others/hmmer/testsuite/trace_test.seq

   1 >seq1 Basic traceback. SNB M ECT
   2 ACDEFGHIKL
   3 >seq2 C-terminal tail; one CC transition
   4 ACDEFGHIKLY
   5 >seq3 C-terminal tail; three CC transitions
   6 ACDEFGHIKLYYY
   7 >seq4 N-terminal tail; one NN transition
   8 YACDEFGHIKL
   9 >seq5 N-terminal tail; three NN transitions
  10 YYYACDEFGHIKL
  11 >seq6 one JJ
  12 ACDEFGHIKLYACDEFGHIKL
  13 >seq7 three JJ
  14 ACDEFGHIKLYYYACDEFGHIKL
  15 >seq8 D->E wing unfolding
  16 ACDEFGHIK
  17 >seq9 B->D wing unfolding
  18 CDEFGHIKL
  19 >seq10 MD, DD, DM transitions
  20 ACDEHIKL
  21 >seq11 MI, II, IM transitions
  22 ACDEFYYYGHIKL
  23 >seq12 bogosity
  24 Y
  25