4 ([begin of Eukaryota]
\r
10 ([begin of eukaryote_crown_group]
\r
15 ([begin of Eumetazoa]
\r
16 ([begin of Bilateria]
\r
17 ([begin of Coelomata]
\r
18 ([begin of Deuterostomia]
\r
19 ([begin of Chordata]
\r
21 ([begin of Craniata]
\r
22 ([begin of Vertebrata]
\r
23 ([begin of Gnathostomata-jawed_vertebrates]
\r
24 ([begin of Teleostomi]
\r
25 ([begin of Tetrapoda]
\r
27 ([begin of Mammalia]
\r
29 ([begin of Eutheria]
\r
31 ([begin of Primates]
\r
33 ([begin of Catarrhini]
\r
34 (((([&&NHX:S=HUMAN],([&&NHX:S=PANPA],[&&NHX:S=PANTR])),([&&NHX:S=GORBE],[&&NHX:S=GORGO])),[&&NHX:S=PONPY])[&&NHX:S=Hominidae],
\r
35 ((([&&NHX:S=HYLAG],[&&NHX:S=HYLLA]),[&&NHX:S=HYLPI]),[&&NHX:S=HYLSY])[&&NHX:S=Hylobatidae-Gibbons]),
\r
36 ([begin of Cercopithecidae]
\r
39 ([&&NHX:S=MANSP-Mandrill],
\r
40 ([&&NHX:S=PAPHA-Hamadryas_baboon],[&&NHX:S=PAPAN-Olive_baboon])[&&NHX:S=Papio-Baboons:T=9554]
\r
42 ([&&NHX:S=MACMU-Rhesus_macaque],[&&NHX:S=MACFA-Crab_eating_macaque])[&&NHX:S=Macaca:T=9539]
\r
44 [&&NHX:S=CERAE-African-green-monkey:T=9534]
\r
45 )[&&NHX:S=Cercopithecinae:T=9528],
\r
46 ([&&NHX:S=COLGU-Guereza:T=33548],[&&NHX:S=PYGBI-Black_snub_nosed_monkey:T=61621])[&&NHX:S=Colobinae:T=9569]
\r
47 )[&&NHX:S=Cercopithecidae-Old_World_monkeys:T=9527]
\r
48 )[&&NHX:S=Catarrhini:T=9526],
\r
49 ([&&NHX:S=SAISC-Common_squirrel_monkey],[&&NHX:S=BRAAR-Woolly_spider_monkey])[&&NHX:S=Platyrrhini-New_World_Monkeys]),
\r
50 ([&&NHX:S=TARBA],[&&NHX:S=TARSY])[&&NHX:S=Tarsii-Tarsiers]),
\r
51 (((([&&NHX:S=CHEMA-Lemur],[&&NHX:S=CHEME-Fattailed_dwarf_lemur]),[&&NHX:S=HAPGR-Gray_gentle_lemur]),[&&NHX:S=LEPMU-Weasel_lemur]),([&&NHX:S=GALCR-Thicktailed_galago],[&&NHX:S=PERPO-Potto]))[&&NHX:S=Strepsirhini-lemurs;etc.]
\r
52 )[&&NHX:S=Primates:T=9443],
\r
54 ([begin of Rodentia]
\r
56 ([&&NHX:S=MOUSE:T=10090],[&&NHX:S=RAT:T=10116])[&&NHX:S=Murinae-Mice:T=39107],
\r
58 ([&&NHX:S=MESAU-Golden_hamster:T=10036],[&&NHX:S=MESBR-Turkish_hamster:T=10037]),
\r
59 ([&&NHX:S=CRIMI-Armenian_hamster:T=10032],[&&NHX:S=CRIGR-Chinese_hamster:T=10029])
\r
60 )[&&NHX:S=Cricetinae-Hamsters:T=10026]
\r
61 )[&&NHX:S=Muridae:T=10066],
\r
62 [&&NHX:S=CAVPO-Guinea_pig:T=10141]
\r
63 )[&&NHX:S=Rodentia:T=9989],
\r
64 [&&NHX:S=RABIT:T=9986])),
\r
65 ((([&&NHX:S=CANFA],[&&NHX:S=VULVU-Red_fox]),[&&NHX:S=FELCA-Cat])[&&NHX:S=Carnivora],
\r
66 ([&&NHX:S=HORSE:T=9796],([&&NHX:S=PIG],([&&NHX:S=CEREL-Red_deer:T=9860],([&&NHX:S=BOVIN:T=9913],([&&NHX:S=SHEEP:T=9940],[&&NHX:S=CAPHI-Goat:T=9925])))[&&NHX:S=Ruminantia:T=9845])))
\r
67 )[&&NHX:S=Eutheria],
\r
68 (([&&NHX:S=DIDMA-North_American_opossum],[&&NHX:S=MONDO-Shorttailed_grey_opossum]),
\r
69 [&&NHX:S=SMIMA-Stripefaced_dunnart:T=9302])[&&NHX:S=Metatheria-Marsupials:T=9263 ]
\r
71 ([begin of Prototheria ]
\r
72 [&&NHX:S=ORNAN-Duckbill_platypus],
\r
73 ([&&NHX:S=ZAGBR-Longbeaked_echidna],[&&NHX:S=TACAC-Australian_echidna])[&&NHX:S=Tachyglossidae]
\r
74 )[&&NHX:S=Prototheria]
\r
75 )[&&NHX:S=Mammalia],
\r
77 ([begin of Sauropsida]
\r
78 ([begin of Testudines]
\r
79 [&&NHX:S=TRASC-Red-eared_slider_turtle],[&&NHX:S=CHESE-Snapping_turtle]
\r
80 )[&&NHX:S=Testudines-Turtles],
\r
83 ([begin of Archosauria]
\r
85 [&&NHX:S=CHICK],[&&NHX:S=ANAPL-Domestic_duck]
\r
87 ([begin of Crocodylidae]
\r
88 [&&NHX:S=ALLMI-American_alligator],[&&NHX:S=CRONI-Nile_crocodile]
\r
89 )[&&NHX:S=Crocodylidae]
\r
90 )[&&NHX:S=Archosauria],
\r
92 ([begin of Lepidosauria]
\r
94 ([&&NHX:S=BOACO-Boa_constrictor],[&&NHX:S=TRIAB-Green_pit_viper:T=8765])[&&NHX:S=Serpentes:T=8570],
\r
95 ([&&NHX:S=IGUIG-Common_iguana],[&&NHX:S=ANOCA-Green_anole:T=28377])[&&NHX:S=Iguania:T=8511]
\r
96 )[&&NHX:S=Squamata:T=8509],
\r
97 [&&NHX:S=SPHPU-Tuatara]
\r
98 )[&&NHX:S=Lepidosauria]
\r
100 )[&&NHX:S=Sauropsida]
\r
102 )[&&NHX:S=Amniota],
\r
104 ([begin of Amphibia]
\r
105 ([begin of Batrachia]
\r
106 ([&&NHX:S=XENLA],[&&NHX:S=RANCA-Bull_frog])[&&NHX:S=Anura],
\r
107 ([&&NHX:S=CYNPY-Japanese_common_newt],[&&NHX:S=NOTVI-Eastern_newt])[&&NHX:S=Caudata]
\r
108 )[&&NHX:S=Batrachia],
\r
109 ([&&NHX:S=DERME],[&&NHX:S=GRAAL])[&&NHX:S=Gymnophiona]
\r
110 )[&&NHX:S=Amphibia]
\r
112 )[&&NHX:S=Tetrapoda],
\r
115 ([&&NHX:S=ONCMY-Rainbow_trout:T=8022],[&&NHX:S=FUGRU:T=31033]),
\r
117 [&&NHX:S=BRARE-Zebrafish:T=7955],([&&NHX:S=CYPCA-Common_carp:T=7962],[&&NHX:S=CARAU-Goldfish:T=7957])[&&NHX:S=Cyprininae:T=39560]
\r
118 )[&&NHX:S=Ostariophysi:T=32519]
\r
119 )[&&NHX:S=Euteleostei:T=32447]
\r
120 )[&&NHX:S=Teleostomi:T=117570],
\r
122 ([&&NHX:S=ALOVU-Thresher_shark],[&&NHX:S=DASSA-Atlantic_stingray])[&&NHX:S=Chondrichthyes:T=7777]
\r
124 )[&&NHX:S=Gnathostomata-jawed_vertebrates],
\r
126 ([&&NHX:S=LAMFL-River_lamprey],[&&NHX:S=LAMJA-Japanese_lamprey])[&&NHX:S=Hyperoartia-lampreys ]
\r
128 )[&&NHX:S=Vertebrata],
\r
129 ([&&NHX:S=EPTBU-Inshore hagfish:T=7764],[&&NHX:S=EPTST-Pacific_hagfish:T=7765])[&&NHX:S=Hyperotreti]
\r
130 )[&&NHX:S=Craniata],
\r
131 ([&&NHX:S=BRAFL-Florida_lancelet:T=7739],[&&NHX:S=BRALA-Amphioxus:T=7740])[&&NHX:S=Cephalochordata]
\r
133 ([&&NHX:S=CIOIN:T=7719],[&&NHX:S=CIOSA:T=51511])[&&NHX:S=Urochordata-Tunicates:T=7712]
\r
134 )[&&NHX:S=Chordata],
\r
135 ([begin of Echinodermata]
\r
136 ([&&NHX:S=STRPU-Purple_sea_urchin:T=7668],[&&NHX:S=ANTCR:T=7629])[&&NHX:S=Echinoidea-Sea_urchins:T=7625],
\r
137 [&&NHX:S=ASTPE-Starfish:T=7594]
\r
138 )[&&NHX:S=Echinodermata:T=7586]
\r
139 )[&&NHX:S=Deuterostomia:T=33511],
\r
140 ([begin of Protostomia]
\r
142 [&&NHX:S=APLCA-California_sea_hare:T=6500],[&&NHX:S=LYMST-Great_pond_snail:T=6523]
\r
143 )[&&NHX:S=Mollusca:T=6447],
\r
144 [&&NHX:S=HIRME-Medicinal_leech:T=6421]
\r
145 )[&&NHX:S=Protostomia:T=33317]
\r
146 )[&&NHX:S=Coelomata:T=33316],
\r
148 ([begin of arthropod/nematode group]
\r
150 ([begin of Arthropoda]
\r
153 ([&&NHX:S=DROME:T=7227],[&&NHX:S=DROVI-Drosophila_virilis:T=7244]),
\r
154 [&&NHX:S=MUSDO-House_fly:T=7370]
\r
156 ,[&&NHX:S=BLAGE-German_cockroach:T=6973]
\r
157 )[&&NHX:S=Insecta:T=50557],
\r
159 ([&&NHX:S=HOMAM-American_lobster:T=6706],[&&NHX:S=CARMA-Green_crab:T=6759])[&&NHX:S=Crustacea:T=6657]
\r
160 ,[&&NHX:S=LIMPO-Atlantic_horseshoe_crab:T=6850]
\r
162 )[&&NHX:S=Arthropoda:T=6656],
\r
164 ([begin of Nematoda]
\r
166 ([&&NHX:S=CAEEL:T=6239],[&&NHX:S=CAEBR:T=6238])[&&NHX:S=Rhabditidae:T=6243],
\r
167 [&&NHX:S=HAECO-Haemonchus_contortus:T=6289]
\r
168 )[&&NHX:S=Rhabditida:T=6236],
\r
169 [&&NHX:S=ASCSU-Pig_roundworm:T=6253]
\r
170 )[&&NHX:S=Nematoda:T=6231]
\r
172 )[arthropod/nematode group]
\r
174 )[&&NHX:S=Bilateria:T=33213],
\r
177 ([&&NHX:S=ACTEQ-European_sea_anemone:T=6106],[&&NHX:S=ANTEL-Sea_anemone:T=6110])[&&NHX:S=Actiniaria-Sea_anemones:T=6103],
\r
178 [&&NHX:S=TRICY-Jellyfish:T=6141]
\r
179 )[&&NHX:S=Cnidaria:T=6073]
\r
182 )[&&NHX:S=Eumetazoa:T=6072],
\r
185 [&&NHX:S=EPHMU-Muellers_freshwater_sponge:T=6052],[&&NHX:S=GEOCY-Geodia_cydonium:T=6047]
\r
186 )[&&NHX:S=Porifera-Sponges:T=6040]
\r
188 )[&&NHX:S=Metazoa:T=33208],
\r
195 ([begin of Basidiomycota]
\r
197 ([&&NHX:S=LENED-Shiitake_mushroom:T=5353],[&&NHX:S=AGABI-Common_mushroom:T=5341])[&&NHX:S=Agaricales:T=5338],
\r
198 [&&NHX:S=PHACH-Phanerochaete_chrysosporium:T=5306]
\r
199 )[&&NHX:S=Hymenomycetes:T=5302],
\r
200 ([&&NHX:S=USTMA-Smut_fungus:T=5270],[&&NHX:S=USTSP-Smut_fungus:T=5271])[&&NHX:S=Ustilago:T=5269]
\r
201 )[&&NHX:S=Basidiomycota],
\r
202 ([begin of Ascomycota]
\r
206 ([&&NHX:S=YEAST:T=4932],[&&NHX:S=SACKL:T=4934])[&&NHX:S=Saccharomyces:T=4930],
\r
207 ([&&NHX:S=KLULA:T=28985],[&&NHX:S=KLUMA:T=4911])[&&NHX:S=Kluyveromyces:T=4910][,
\r
208 ([&&NHX:S=PICPA-Pichia_pastoris:T=4922],[&&NHX:S=PICJA-Pichia_jadinii:T=4903],[&&NHX:S=PICAN-Pichia_angusta:T=4905])[&&NHX:S=Pichia:T=4919]
\r
209 ,[&&NHX:S=YAMOH-Yamadazyma_ohmeri:T=34356]]
\r
210 )[&&NHX:S=Saccharomycetaceae:T=4893],
\r
212 [&&NHX:S=CANAL:T=5476],[&&NHX:S=CANTR:T=5482][,[&&NHX:S=CANGA-Candida_glabrata:T=5478],[&&NHX:S=CANMA-Candida_maltosa:T=5479],
\r
213 [&&NHX:S=CANBO-Candida boidinii:T=5477]]
\r
214 )[&&NHX:S=anamorphic_Saccharomycetales:T=118267]
\r
215 )[&&NHX:S=Saccharomycetes:T=4891],
\r
217 ([&&NHX:S=NEUCR:T=5141],[&&NHX:S=NEUIN:T=5142])[&&NHX:S=Sordariales:T=5139],
\r
218 ([&&NHX:S=ASPNG:T=5061],[&&NHX:S=EMENI:T=5072])[&&NHX:S=Eurotiales:T=5042])
\r
220 ([&&NHX:S=SCHPO:T=4896],[&&NHX:S=PNECA-Pneumocystis_carinii:T=4754])
\r
221 )[&&NHX:S=Ascomycota]
\r
224 [&&NHX:S=MORPI-Mortierella_alpina:T=64518],[&&NHX:S=MUCRO-Mucor_rouxii:T=29923]
\r
225 )[&&NHX:S=Zygomycota:T=4825]
\r
229 ([begin of Viridiplantae]
\r
230 ([begin of Streptophyta]
\r
231 ([begin of Charophyta/Embryophyta group]
\r
232 ([begin of Embryophyta]
\r
233 ([begin of Tracheophyta]
\r
234 ([begin of Spermatophyta]
\r
236 ([begin of Magnoliophyta]
\r
237 ([begin of Liliopsida]
\r
240 ([&&NHX:S=MAIZE:T=4577],[&&NHX:S=SORBI-Sorghum_bicolor:T=4558])[&&NHX:S=Panicoideae:T=147369],
\r
243 ([&&NHX:S=HORVU-Barley:T=4513],[&&NHX:S=WHEAT-Triticum_aestivum:T=4565])[&&NHX:S=Triticeae:T=147389],
\r
244 [&&NHX:S=AVESA-Oat:T=4498]
\r
245 )[&&NHX:S=Pooideae:T=147368],
\r
246 [&&NHX:S=ORYSA-Rice:T=4530]
\r
248 )[&&NHX:S=Poaceae-Grasses:T=4479],
\r
251 [&&NHX:S=ALLCE-Onion:T=4679],[&&NHX:S=ASPOF-Garden_asparagus:T=4686]
\r
252 )[&&NHX:S=Asparagales:T=73496]
\r
254 )[&&NHX:S=Liliopsida-Monocotyledons:T=4447],
\r
256 ([begin of eudicotyledons]
\r
257 (([&&NHX:S=TOBAC-Common_tobacco:T=4097],[&&NHX:S=NICPL-Curled_leaved_tobacco:T=4092])[&&NHX:S=Nicotiana:T=4085],
\r
258 ([&&NHX:S=LYCES-Tomato:T=4081],[&&NHX:S=SOLTU-Potato:T=4113])[&&NHX:S=Solanum:T=4107])[&&NHX:S=Asteridae:T=71274],
\r
261 ([begin of Rosidae]
\r
264 ([&&NHX:S=SOYBN:T=3847],[&&NHX:S=PEA:T=3888][,[&&NHX:S=MEDSA-Alfalfa:T=3879]])[&&NHX:S=Fabales:T=72025],
\r
265 ([&&NHX:S=CUCSA-Cucumber:T=3659],[&&NHX:S=CUCMA-Winter_squash:T=3661])[&&NHX:S=Cucurbitales:T=71239]
\r
266 )[&&NHX:S=eurosids I:T=91835],
\r
270 ([&&NHX:S=BRANA-Rape:T=3708],[&&NHX:S=BRACM-Field_mustard:T=3711])[&&NHX:S=Brassica:T=3705]
\r
271 ,[&&NHX:S=ARATH:T=3702]
\r
272 )[&&NHX:S=Brassicaceae-Mustard_family:T=3700],
\r
274 ([&&NHX:S=CITSI-Citrus_sinensis:T=2711],[&&NHX:S=CITUN-Citrus_unshiu:T=55188])[&&NHX:S=Sapindales:T=41937],
\r
275 ([&&NHX:S=GOSHI-Upland_cotton:T=3635],[&&NHX:S=THECC-Cacao:T=3641])[&&NHX:S=Malvales:T=41938]
\r
277 )[&&NHX:S=eurosids II:T=91836]
\r
279 )[&&NHX:S=Rosidae:T=71275],
\r
282 [&&NHX:S=BETVU-Beet:T=3555],[&&NHX:S=SPIOL-Spinach:T=3562]
\r
283 )[&&NHX:S=Caryophyllidae:T=71273]
\r
286 )[&&NHX:S=eudicotyledons:T=71240]
\r
287 )[&&NHX:S=Magnoliophyta-Flowering_plants:T=3398],
\r
290 [&&NHX:S=EPHTW-Ephedra_tweediana:T=3390],[&&NHX:S=WELMI-Welwitschia_mirabilis:T=3377]
\r
291 )[&&NHX:S=Gnetophyta:T=58022]
\r
293 )[a suspicious grouping],
\r
300 [&&NHX:S=PSEMZ-Douglas_fir:T=3357],[&&NHX:S=PINTH-Japanese_black_pine:T=3350]
\r
301 )[&&NHX:S=Pinaceae:T=3318],
\r
302 [&&NHX:S=JUNVI-Red_cedar:T=39584]
\r
303 )[&&NHX:S=Coniferales:T=3313],
\r
304 [&&NHX:S=GINBI-Ginkgo_biloba:T=3311]
\r
305 )[a suspicious grouping],
\r
307 ([&&NHX:S=ZAMFU-Zamia_furfuracea:T=42329],[&&NHX:S=ZAMFI-Zamia_fischeri:T=34342])[&&NHX:S=Cycadales:T=3297]
\r
308 )[a suspicious grouping]
\r
310 )[&&NHX:S=Spermatophyta-Seed_plants:T=58024],
\r
312 [&&NHX:S=EQUAR-Field_horsetail:T=3258]
\r
314 )[&&NHX:S=Tracheophyta-Vascular_plants:T=58023],
\r
316 ([begin of Bryophyta]
\r
317 [&&NHX:S=CERPU-Ceratodon_purpureus:T=3225],[&&NHX:S=PHYPA-Physcomitrella_patens:T=3218]
\r
318 )[&&NHX:S=Bryophyta-Mosses:T=3208]
\r
320 )[&&NHX:S=Embryophyta-Land_plants:T=3193],
\r
322 [&&NHX:S=COLOB-Coleochaete_orbicularis:T=3124]
\r
324 )[&&NHX:S=Charophyta_Embryophyta_group:T=131221],
\r
326 [&&NHX:S=MESVI-Mesostigma_viride:T=41882]
\r
328 )[&&NHX:S=Streptophyta:T=35493],
\r
330 ([begin of Chlorophyta]
\r
332 [&&NHX:S=VOLCA-Volvox_carteri:T=3067],
\r
333 ([&&NHX:S=CHLEU-Chlamydomonas_eugametos:T=3053],[&&NHX:S=CHLRE-Chlamydomonas_reinhardtii:T=3055])[&&NHX:S=Chlamydomonas:T=3052]
\r
334 )[&&NHX:S=Chlorophyceae:T=3166],
\r
335 [&&NHX:S=CHLVU-Chlorella_vulgaris:T=3077]
\r
336 )[&&NHX:S=Chlorophyta-Green_algae:T=3041]
\r
338 )[&&NHX:S=Viridiplantae:T=33090]
\r
340 ([&&NHX:S=ACHAM-Achlya_ambisexualis:T=4768],[&&NHX:S=COSCS-Costaria_costata:T=2872])[&&NHX:S=Stramenopiles:T=33634]
\r
343 ([&&NHX:S=BABBO-Babesia_bovis:T=5865],[&&NHX:S=PLAFA-Plasmodium_falciparum:T=5833])
\r
344 ,[&&NHX:S=PARTE-Paramecium_tetraurelia:T=5888]
\r
345 )[&&NHX:S=Alveolata:T=33630]
\r
347 ([&&NHX:S=PORPU-Porphyra_purpurea:T=2787],[&&NHX:S=CYACA-Cyanidium_caldarium:T=2771])[&&NHX:S=Rhodophyta-Red_algae:T=2763]
\r
348 )[&&NHX:S=eukaryote_crown_group:T=33089],
\r
349 [&&NHX:S=DICDI-Dictyostelium_discoideum:T=44689]
\r
351 [&&NHX:S=ENTHI-Entamoeba_histolytica:T=5759]),
\r
353 ([&&NHX:S=TRYBB-Trypanosoma_brucei_brucei:T=5702],[&&NHX:S=LEIMA-Leishmania_major:T=5664])
\r
354 ,[&&NHX:S=EUGGR-Euglena_gracilis:T=3039])[&&NHX:S=Euglenozoa:T=33682]
\r
356 [&&NHX:S=PHYPO-Physarum_polycephalum:T=5791]
\r
358 ([&&NHX:S=GIALA-Giardia_intestinalis:T=5741],[&&NHX:S=SPIVO-Spironucleus_vortens:T=58336])[&&NHX:S=Diplomonadida:T=5738]
\r
360 )[&&NHX:S=Eukaryota:T=2759],
\r
362 ([begin of Archaea]
\r
364 ([begin of Crenarchaeota]
\r
365 ([&&NHX:S=SULAC-Sulfolobus_acidocaldarius:T=2285],[&&NHX:S=SULSO-Sulfolobus_solfataricus:T=2287])[&&NHX:S=Sulfolobus:T=2284],
\r
366 [&&NHX:S=AERPE-Aeropyrum_pernix:T=56636]
\r
367 )[&&NHX:S=Crenarchaeota:T=28889],
\r
369 ([begin of Euryarchaeota]
\r
372 ([&&NHX:S=METJA-Methanococcus_jannaschii:T=2190],[&&NHX:S=METVA-Methanococcus_vannielii:T=2187])[&&NHX:S=Methanococcales:T=2182],
\r
374 [&&NHX:S=ARCFU-Archaeoglobus_fulgidus:T=2234],
\r
375 [&&NHX:S=THEAC-Thermoplasma_acidophilum:T=2303]
\r
378 ([&&NHX:S=PYRFU-Pyrococcus_furiosus:T=2261],[&&NHX:S=PYRHO-Pyrococcus_horikoshii:T=53953])[&&NHX:S=Thermococcales:T=2258]
\r
380 ([&&NHX:S=METTH-Methanobacterium_thermoautotrophicum:T=2166],[&&NHX:S=METFE-Methanothermus_fervidus:T=2180])[&&NHX:S=Methanobacteriales:T=2158]
\r
381 )[&&NHX:S=Euryarchaeota:T=28890]
\r
383 )[&&NHX:S=Archaea:T=2157]
\r
388 ([begin of Bacteria]
\r
390 ([&&NHX:S=AQUAE-Aquifex_aeolicus:T=63363],[&&NHX:S=AQUPY-Aquifex_pyrophilus:T=2714])[&&NHX:S=Aquificales:T=32069],
\r
392 ([&&NHX:S=THEMA-Thermotoga_maritima:T=2336],[&&NHX:S=THENE-Thermotoga_neapolitana:T=2337])[&&NHX:S=Thermotogales:T=2419],
\r
394 (([&&NHX:S=THEAQ-Thermus_aquaticus:T=271],[&&NHX:S=THETH-Thermus_thermophilus:T=274])[&&NHX:S=Thermus_group:T=68933],
\r
395 [&&NHX:S=DEIRA-Deinococcus_radiodurans:T=1299])[&&NHX:S=Thermus/Deinococcus_group:T=1297],
\r
399 ([begin of Firmicutes-grampositive_bacteria]
\r
400 ([begin of Bacillus/Clostridium_group]
\r
405 [&&NHX:S=BACSU-Bacillus_subtilis:T=1423],[&&NHX:S=BACST-Bacillus_stearothermophilus:T=1422][,[&&NHX:S=BACCO-Bacillus_coagulans:T=1398]
\r
406 ,[&&NHX:S=BACCA-Bacillus_caldotenax:T=1395],[&&NHX:S=BACME-Bacillus megaterium:T=1404]]
\r
407 )[&&NHX:S=Bacillus:T=1386],
\r
408 [&&NHX:S=STAAU-Staphylococcus_aureus:T=1280]
\r
409 )[&&NHX:S=Bacillus/Staphylococcus_group:T=1385],
\r
411 ([&&NHX:S=STRMU-Streptococcus_mutans:T=1309],[&&NHX:S=STRPN-Streptococcus_pneumoniae:T=1313])[&&NHX:S=Streptococcus:T=1301],
\r
412 [&&NHX:S=LACLA-Lactococcus_lactis_lactis:T=1360]
\r
413 )[&&NHX:S=Streptococcaceae:T=1300]
\r
414 )[&&NHX:S=Bacillus/Lactobacillus/Streptococcus_group:T=91061],
\r
415 [&&NHX:S=CLOPA-Clostridium_pasteurianum:T=1501]
\r
416 ),[these paranthesis are -- even more -- questionable]
\r
418 ([&&NHX:S=MYCGE-Mycoplasma_genitalium:T=2097],[&&NHX:S=MYCPN-Mycoplasma_pneumoniae:T=2104])[&&NHX:S=Mycoplasmatales:T=2085],
\r
419 [&&NHX:S=ACHLA-Acholeplasma_laidlawii:T=2148]
\r
420 )[&&NHX:S=Mollicutes:T=31969]
\r
421 )[&&NHX:S=Bacillus/Clostridium_group:T=31968],
\r
422 ([begin of Actinobacteria]
\r
425 ([&&NHX:S=MYCTU-Mycobacterium_tuberculosis:T=1773],[&&NHX:S=MYCBO-Mycobacterium_bovis:T=1765])[&&NHX:S=Mycobacterium_tuberculosis_complex:T=77643],
\r
426 [&&NHX:S=MYCLE-Mycobacterium_leprae:T=1769]
\r
427 [,[&&NHX:S=MYCSM-Mycobacterium_smegmatis:T=1772]]
\r
428 )[&&NHX:S=Mycobacterium:T=1763],
\r
429 [&&NHX:S=CORGL-Corynebacterium_glutamicum:T=1718]
\r
430 )[&&NHX:S=Corynebacterineae:T=85007],
\r
431 [&&NHX:S=PROFR-Propionibacterium_freudenreichii_shermanii:T=1752]
\r
432 )[&&NHX:S=Actinobacteria:T=1760]
\r
433 )[&&NHX:S=Firmicutes-grampositive_bacteria:T=1239],
\r
435 ([begin of group of Cyanobacteria, Proteobacteria, Chlamydiales, Green_sulfur, Spirochaetales ?]
\r
438 ([&&NHX:S=CHLPN-Chlamydophila_pneumoniae:T=83558],[&&NHX:S=CHLTR-Chlamydia_trachomatis:T=813])[&&NHX:S=Chlamydiales/Verrucomicrobia_group:T=51290],
\r
439 ([&&NHX:S=CHLLI-Chlorobium_limicola:T=1092],[&&NHX:S=CHLVI-Chlorobium_vibrioforme:T=1098])[&&NHX:S=Green_sulfur_bacteria:T=1090]
\r
441 ([&&NHX:S=LEPIN-Leptospira_interrogans:T=173],[&&NHX:S=BORBU-Borrelia_burgdorferi:T=139])[&&NHX:S=Spirochaetales:T=136]
\r
444 ([begin of group of Cyanobacteria and Proteobacteria ?]
\r
446 ([begin of Cyanobacteria]
\r
448 ([&&NHX:S=SYNP2-PCC_7002:T=32049],[&&NHX:S=SYNP6-PCC_6301:T=1139][,[&&NHX:S=SYNEL:T=32046],[&&NHX:S=SYNLI:T=33070]])[&&NHX:S=Synechococcus:T=1129],
\r
449 ([&&NHX:S=SYNY1-PCC_6701:T=1144],[&&NHX:S=SYNY3-PCC_6803:T=1148][,[&&NHX:S=SYNY4-PCC_6714:T=1147],[&&NHX:S=SYNY8-PCC_6308:T=113355]])[&&NHX:S=Synechocystis:T=1142]
\r
450 )[&&NHX:S=Chroococcales:T=1118],
\r
451 [&&NHX:S=ANASP-Anabaena_PCC_7120:T=1174]
\r
452 [,[&&NHX:S=SPIPL-Spirulina_platensis:T=1156]]
\r
453 )[&&NHX:S=Cyanobacteria:T=1117],
\r
455 ([begin of Proteobacteria]
\r
460 ([begin of gamma_subdivision]
\r
464 [&&NHX:S=SALTY-Salmonella_typhimurium:T=602],[&&NHX:S=ECOLI-Escherichia_coli:T=562][,[&&NHX:S=KLEPN-Klebsiella_pneumoniae:T=573]]
\r
465 )[&&NHX:S=Enterobacteriaceae:T=91347],
\r
466 [&&NHX:S=BUCAP-Buchnera_aphidicola:T=98794]
\r
467 )[&&NHX:S=Enterobacteriaceae_and_related_endosymbionts:T=91347],
\r
468 [&&NHX:S=HAEIN-Haemophilus_influenzae:T=727]
\r
469 [,[&&NHX:S=AZOVI-Azotobacter_vinelandii:T=354]
\r
470 ,([&&NHX:S=COXBU-Coxiella_burnetii:T=777],[&&NHX:S=LEGPN-Legionella_pneumophila:T=446])[&&NHX:S=Legionellaceae_group:T=118969]]
\r
471 ),[these paranthesis are -- even more -- questionable]
\r
473 [&&NHX:S=PSEPU-Pseudomonas_putida:T=303],[&&NHX:S=PSEAE-Pseudomonas_aeruginosa:T=287]
\r
474 )[&&NHX:S=Pseudomonas_group:T=72274]
\r
475 )[&&NHX:S=gamma_subdivision:T=1236],
\r
477 ([begin of beta_subdivision]
\r
478 [&&NHX:S=ALCEU-Alcaligenes_eutrophus:T=510],
\r
479 ([&&NHX:S=NEIME-Neisseria_meningitidis:T=487],[&&NHX:S=NEILA-Neisseria_lactamica:T=486])
\r
480 )[&&NHX:S=beta_subdivision:T=28216]
\r
484 ([begin of alpha_subdivision]
\r
487 ([&&NHX:S=RHOCA-Rhodobacter_capsulatus:T=1061],[&&NHX:S=RHOSH-Rhodobacter_sphaeroides:T=1063])[&&NHX:S=Rhodobacter:T=1060],
\r
488 [&&NHX:S=PARDE-Paracoccus_denitrificans:T=266]
\r
489 )[&&NHX:S=Rhodobacter_group:T=31989],
\r
493 ([&&NHX:S=RHILE-Rhizobium_leguminosarum:T=384],[&&NHX:S=RHITR-Rhizobium_tropici:T=398])[&&NHX:S=Rhizobium:T=379],
\r
494 [&&NHX:S=AGRTU-Agrobacterium_tumefaciens:T=362]
\r
495 )[&&NHX:S=Rhizobiaceae:T=82115],
\r
497 [&&NHX:S=BARBA-Bartonella_bacilliformis:T=774],[&&NHX:S=BARQU-Bartonella_quintana:T=803]
\r
498 )[&&NHX:S=Bartonellaceae:T=772]
\r
499 )[&&NHX:S=Rhizobiaceae_group:T=356]
\r
502 ([&&NHX:S=RICPR-Rickettsia_prowazekii:T=782],[&&NHX:S=RICTY-Rickettsia_typhi:T=785])[&&NHX:S=typhus_group:T=114292],
\r
503 [&&NHX:S=RICRI-Rickettsia_rickettsii:T=783]
\r
504 )[&&NHX:S=Rickettsiales:T=766]
\r
505 )[&&NHX:S=alpha_subdivision:T=28211]
\r
508 ([begin of delta/epsilon_subdivisions]
\r
509 ([&&NHX:S=MYXXA-Myxococcus_xanthus:T=34],[&&NHX:S=DESDE-Desulfovibrio_desulfuricans:T=876])[&&NHX:S=delta_subdivision:T=28221],
\r
510 ([&&NHX:S=CAMCO-Campylobacter_coli:T=195],[&&NHX:S=HELPY-Helicobacter_pylori:T=210])[&&NHX:S=epsilon_subdivision:T=29547]
\r
511 )[&&NHX:S=delta/epsilon_subdivisions:T=68525]
\r
513 )[&&NHX:S=Proteobacteria:T=1224]
\r
515 )[group of Cyanobacteria and Proteobacteria ?]
\r
517 )[group of Cyanobacteria, Proteobacteria, Chlamydiales, Green_sulfur, Spirochaetales ?]
\r
522 )[&&NHX:S=Bacteria:T=2]);
\r