1 TRIAD /home/czmasek/DATA/SEQUENCES/GENOMES/JGI/Triad1_best_proteins.fasta
2 NEMVE /home/czmasek/DATA/SEQUENCES/GENOMES/JGI/Nemve1FilteredModels1.fasta
3 CAP /home/czmasek/DATA/SEQUENCES/GENOMES/JGI/CAP_FilteredModelsv1.0.aa.fasta
4 HELRO /home/czmasek/DATA/SEQUENCES/GENOMES/JGI/proteins.Helro1_FilteredModels3.fasta
5 LOTGI /home/czmasek/DATA/SEQUENCES/GENOMES/JGI/Lotgi1_GeneModels_FilteredModels1_aa.fasta
6 CAEBR /home/czmasek/DATA/SEQUENCES/GENOMES/SANGER/brigpep2.pep
7 CAEEL /home/czmasek/DATA/SEQUENCES/GENOMES/ENSEMBL/REL_45/Caenorhabditis_elegans.WB170.45.pep.all.fa
8 SCHMA /home/czmasek/DATA/SEQUENCES/GENOMES/TIGR/Smansoni_preliminary_annotation.pep
9 DAPPU /home/czmasek/DATA/SEQUENCES/GENOMES/JGI/DAPPU_FrozenGeneCatalog_2007_07_03.aa.fasta
10 ANOGA /home/czmasek/DATA/SEQUENCES/GENOMES/ENSEMBL/REL_45/Anopheles_gambiae.AgamP3.45.pep.all.fa
11 CULPI /home/czmasek/DATA/SEQUENCES/GENOMES/METAZOAN/culex_pipiens_3_proteins.fasta
12 AEDAE /home/czmasek/DATA/SEQUENCES/GENOMES/ENSEMBL/REL_45/Aedes_aegypti.AaegL1.45.pep.all.fa
13 DROPS /home/czmasek/DATA/SEQUENCES/GENOMES/BAYLOR/drops_freeze01_genscan.pep.fa
14 DROME /home/czmasek/DATA/SEQUENCES/GENOMES/ENSEMBL/REL_45/Drosophila_melanogaster.BDGP4.3.45.pep.all.fa
15 APIME /home/czmasek/DATA/SEQUENCES/GENOMES/BAYLOR/Amel_release1_OGS_pep.fa
16 NASVI /home/czmasek/DATA/SEQUENCES/GENOMES/METAZOAN/NASVI_protein.fa
17 BOMMO /home/czmasek/DATA/SEQUENCES/GENOMES/BGI/SW_ge2k_BGF.pep
18 TRICA /home/czmasek/DATA/SEQUENCES/GENOMES/BEETLEBASE/beetlebase-v2-fgenesh-predicted-proteins.fa
19 STRPU /home/czmasek/DATA/SEQUENCES/GENOMES/BAYLOR/STRPU_GLEAN3.fa
20 OIKDI /home/czmasek/DATA/SEQUENCES/GENOMES/METAZOAN/Oikopleura_dioica.SNAP.Od.fasta
21 CIOIN /home/czmasek/DATA/SEQUENCES/GENOMES/ENSEMBL/REL_45/Ciona_intestinalis.JGI2.45.pep.all.fa
22 CIOSA /home/czmasek/DATA/SEQUENCES/GENOMES/ENSEMBL/REL_45/Ciona_savignyi.CSAV2.0.45.pep.all.fa
23 BRAFL /home/czmasek/DATA/SEQUENCES/GENOMES/JGI/Brafl1.fasta
24 ORYLA /home/czmasek/DATA/SEQUENCES/GENOMES/ENSEMBL/REL_45/Oryzias_latipes.MEDAKA1.45.pep.all.fa
25 GASAC /home/czmasek/DATA/SEQUENCES/GENOMES/ENSEMBL/REL_45/Gasterosteus_aculeatus.BROADS1.45.pep.all.fa
26 DANRE /home/czmasek/DATA/SEQUENCES/GENOMES/ENSEMBL/REL_45/Danio_rerio.ZFISH6.45.pep.all.fa
27 FUGRU /home/czmasek/DATA/SEQUENCES/GENOMES/ENSEMBL/REL_45/Takifugu_rubripes.FUGU4.45.pep.all.fa
28 TETNG /home/czmasek/DATA/SEQUENCES/GENOMES/ENSEMBL/REL_45/Tetraodon_nigroviridis.TETRAODON7.45.pep.all.fa
29 XENTR /home/czmasek/DATA/SEQUENCES/GENOMES/METAZOAN/proteins.Xentr4.fasta
30 CHICK /home/czmasek/DATA/SEQUENCES/GENOMES/ENSEMBL/REL_45/Gallus_gallus.WASHUC2.45.pep.all.fa
31 ORNAN /home/czmasek/DATA/SEQUENCES/GENOMES/ENSEMBL/REL_46/Ornithorhynchus_anatinus.OANA5.46.pep.all.fa
32 MOUSE /home/czmasek/DATA/SEQUENCES/GENOMES/ENSEMBL/REL_45/Mus_musculus.NCBIM36.45.pep.all.fa
33 HUMAN /home/czmasek/DATA/SEQUENCES/GENOMES/METAZOAN/Homo_sapiens.NCBI36.50.pep.all.fa
34 PANTR /home/czmasek/DATA/SEQUENCES/GENOMES/ENSEMBL/REL_46/Pan_troglodytes.CHIMP2.1.46.pep.all.fa
35 RAT /home/czmasek/DATA/SEQUENCES/GENOMES/ENSEMBL/REL_46/Rattus_norvegicus.RGSC3.4.46.pep.all.fa
36 MONDO /home/czmasek/DATA/SEQUENCES/GENOMES/ENSEMBL/REL_46/Monodelphis_domestica.BROADO5.46.pep.all.fa
37 CANFA /home/czmasek/DATA/SEQUENCES/GENOMES/ENSEMBL/REL_45/Canis_familiaris.BROADD2.45.pep.all.fa
38 MONBE /home/czmasek/DATA/SEQUENCES/GENOMES/JGI/Monbr1_best_proteins.fasta
39 PHYBL /home/czmasek/DATA/SEQUENCES/GENOMES/JGI/Phybl1_best_proteins.fasta
40 RHIOR /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/rhizopus_oryzae_3_proteins.fasta
41 SCHJP /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/schizosaccharomyces_japonicus_1_proteins.fasta
42 SCHPO /home/czmasek/DATA/SEQUENCES/GENOMES/SANGER/pompep.fasta
43 SCHOT /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/schizosaccharomyces_octosporus_yfs286_2.fasta
44 ASHGO /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/982.A_gossypii.fasta
45 CANAL /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/candida_albicans_wo1_1_proteins.fasta
46 CANGA /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/Cagl-GL2r2.aa
47 CANTR /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/CANTR_candida_tropicalis_3_proteins.fasta
48 CLALS /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/CLALS_candida_lusitaniae_1_proteins.fasta
49 DEBHA /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/Deha-GL2r1.aa
50 KLULA /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/Klla-GL2r2.aa
51 KLUWA /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/KLUWA_kluyveromyces_waltii.SNAP.aa
52 LODEL /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/lodderomyces_elongisporus_1_proteins.fasta
53 PICGU /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/PICGU_candida_guilliermondii_1_proteins.fasta
54 PICST /home/czmasek/DATA/SEQUENCES/GENOMES/JGI/PICST_FM1.aa.fasta
55 YEAST /home/czmasek/DATA/SEQUENCES/GENOMES/STANFORD/yeast_nrpep.fasta
56 SACCR /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/SACCR_saccharomyces_cerevisiae_rm11-1a_1_proteins.fasta
57 SACPA /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/SACPA_orf_trans.fasta
58 SACBA /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/SACBA_orf_trans.fasta
59 SACCA /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/SACCA_orf_trans.fasta
60 SACMI /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/SACMI_orf_trans.fasta
61 YARLI /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/Yali-GL2r2.aa
62 ASPCL /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/ASPCL_1_proteins.fasta
63 ASPFL /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/ASPFL_2_proteins.fasta
64 ASPFU /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/aspergillus_fumigatus_proteins.fasta
65 ASPNG /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/Aspni1_FilteredModels1.aa.fasta
66 ASPOR /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/ASPOR_1_proteins.fasta
67 ASPTE /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/aspergillus_terreus_1_proteins.fasta
68 COCIM /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/COCIM_rs_2_proteins.fasta
69 NEOFI /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/NEOFI_proteins.fasta
70 EMENI /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/aspergillus_nidulans_1_proteins.fasta
71 AJECA /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/AJECA_histoplasma_capsulatum_1_proteins.fasta
72 UNCRE /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/UNCRE_uncinocarpus_reesii_2_proteins.fasta
73 PARBR /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/paracoccidioides_brasiliensis_pb03_1_proteins.fasta
74 BOTFB /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/BOTFB_botrytis_cinerea_1_proteins.fasta
75 SCLSC /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/SCLSC_sclerotinia_sclerotiorum_1_proteins.fasta
76 CHAGB /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/chaetomium_globosum_1_proteins.fasta
77 FUSOX /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/fusarium_oxysporum_f._sp._lycopersici_2_proteins.fasta
78 GIBMO /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/GIBMO_fusarium_verticillioides_3_proteins.fasta
79 GIBZE /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/fusarium_graminearum_3_proteins.fasta
80 MAGGR /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/magnaporthe_grisea_5_proteins.fasta
81 FUSSH /home/czmasek/DATA/SEQUENCES/GENOMES/JGI/Necha2_best_proteins.fasta
82 NEUCR /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/neurospora_crassa_7_proteins.fasta
83 PODAN /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/cds_podo_v1
84 TRIRE /home/czmasek/DATA/SEQUENCES/GENOMES/JGI/TRIRE_proteins.FilteredModelsV2.0.fasta
85 TRIVE /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/TRIVE_proteins.FM3.fasta
86 TRIAT /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/Tatroviride.FilteredModels4.aa.fasta
87 CRYPA /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/Cparasitica.FilteredModels.aa.fasta
88 PHANO /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/stagonospora_nodorum_1_proteins.fasta
89 MYCFI /home/czmasek/DATA/SEQUENCES/GENOMES/JGI/MYCFI_FilteredModelsv1.0.aa.fasta
90 MYCGR /home/czmasek/DATA/SEQUENCES/GENOMES/JGI/MYCGR_proteins.FilteredModels1.fasta
91 PYRTR /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/pyrenophora_tritici-repentis_1_proteins.fasta
92 COCHE /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/CocheC5_1_GeneModels_FilteredModels1_aa.fasta
93 COPCI /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/coprinus_cinereus_1_proteins.fasta
94 CRYNE /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/cryptococcus_neoformans_1_proteins.fasta
95 LACBI /home/czmasek/DATA/SEQUENCES/GENOMES/JGI/LACBI_BestModelsv1.aa.fasta
96 PHACH /home/czmasek/DATA/SEQUENCES/GENOMES/JGI/PHACH_BestModels2.1.prot
97 POSPL /home/czmasek/DATA/SEQUENCES/GENOMES/JGI/Pospl1_FilteredModels2_proteins.fasta
98 SPORO /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/Sroseus.FilteredModels1.aa.fasta
99 MELLP /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/Mlaricis_populina.FilteredModels3.aa.fasta
100 PUCGR /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/PUCGR_puccinia_graminis_f._sp._tritici_2_proteins.fasta
101 USTMA /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/ustilago_maydis_1_proteins.fasta
102 BATDE /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/batrachochytrium_dendrobatidis_1_proteins.fasta
103 ENCCU /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/ENCCU.fasta
104 DICDI /home/czmasek/DATA/SEQUENCES/GENOMES/BAYLOR/dicty_primary_protein
105 DICPU /home/czmasek/DATA/SEQUENCES/GENOMES/PROTIST/Dicpu1_best_proteins.fasta
106 ENTHI /home/czmasek/DATA/SEQUENCES/GENOMES/PROTIST/EHA1.pep
107 PHYPA /home/czmasek/DATA/SEQUENCES/GENOMES/JGI/proteins.Phypa1_1.FilteredModels.fasta
108 SELMO /home/czmasek/DATA/SEQUENCES/GENOMES/JGI/Selmo1_GeneModels_FilteredModels3_aa.fasta
109 ARATH /home/czmasek/DATA/SEQUENCES/GENOMES/TAIR/TAIR7_pep_20070425
110 ARALY /home/czmasek/DATA/SEQUENCES/GENOMES/PLANTS/Araly1_GeneModels_FilteredModels6_aa.fasta
111 VITVI /home/czmasek/DATA/SEQUENCES/GENOMES/PLANTS/Vitis_vinifera_peptide_v1.fa
112 POPTR /home/czmasek/DATA/SEQUENCES/GENOMES/JGI/proteins.Poptr1_1.JamboreeModels.fasta
113 ORYSA /home/czmasek/DATA/SEQUENCES/GENOMES/PLANTS/osa1_5_chr1_12_tigr.fasta
114 ORYSJ /home/czmasek/DATA/SEQUENCES/GENOMES/PLANTS/os_japonica.cds-ami.300503
115 SORBI /home/czmasek/DATA/SEQUENCES/GENOMES/PLANTS/Sorbi1_GeneModels_FilteredModels6_aa.fasta
116 OSTLU /home/czmasek/DATA/SEQUENCES/GENOMES/JGI/OSTLU.FM.aa.fasta
117 OSTTA /home/czmasek/DATA/SEQUENCES/GENOMES/PLANTS/O.tauri.FM.aa.fasta
118 OSTRC /home/czmasek/DATA/SEQUENCES/GENOMES/PLANTS/OstRCC809.FM1.aa.fasta
119 MICPU /home/czmasek/DATA/SEQUENCES/GENOMES/PLANTS/MicromonasCCMP1545.FrozenGeneCatalog_20080206.aa.fasta
120 MIC99 /home/czmasek/DATA/SEQUENCES/GENOMES/PLANTS/MicromonasRCC299.FrozenGeneCatalog_20080206.aa.fasta
121 CHLRE /home/czmasek/DATA/SEQUENCES/GENOMES/JGI/Chlre3_1.GeneCatalogProteins.6JUL06.fasta
122 VOLCA /home/czmasek/DATA/SEQUENCES/GENOMES/JGI/VOLCA.proteins.FilteredModels2.fasta
123 CHLSP /home/czmasek/DATA/SEQUENCES/GENOMES/PLANTS/Chlorella_NC64A.best_proteins.fasta
124 CYAME /home/czmasek/DATA/SEQUENCES/GENOMES/PROTIST/CYAME_cds.fasta
125 PHATR /home/czmasek/DATA/SEQUENCES/GENOMES/JGI/Phatr2_geneModels_FilteredModels2_aa.fasta
126 THAPS /home/czmasek/DATA/SEQUENCES/GENOMES/JGI/Thaps3_geneModels_FilteredModels2_aa.fasta
127 AURAN /home/czmasek/DATA/SEQUENCES/GENOMES/JGI/proteins.Auran1_FilteredModels3.fasta
128 PHYSO /home/czmasek/DATA/SEQUENCES/GENOMES/JGI/proteins.FM_Physo1_1.fasta
129 PHYRM /home/czmasek/DATA/SEQUENCES/GENOMES/PROTIST/proteins.FM_Phyra1_1.fasta
130 PHYIN /home/czmasek/DATA/SEQUENCES/GENOMES/PROTIST/phytophthora_infestans_1_proteins.fasta
131 PHYCP /home/czmasek/DATA/SEQUENCES/GENOMES/PROTIST/PhycaF7_best_proteins.fasta
132 TETTH /home/czmasek/DATA/SEQUENCES/GENOMES/PROTIST/TTA1_08302006.pep
133 PARTE /home/czmasek/DATA/SEQUENCES/GENOMES/PROTIST/Paramecium_peptide_v1.fa
134 CRYHO /home/czmasek/DATA/SEQUENCES/GENOMES/PROTIST/ChominisAnnotatedProtein.fsa
135 CRYPV /home/czmasek/DATA/SEQUENCES/GENOMES/PROTIST/CparvumAnnotatedProtein.fsa
136 TOXGO /home/czmasek/DATA/SEQUENCES/GENOMES/PROTIST/TgondiiAnnotatedProteins_toxoDB-4.2.fasta
137 EIMTE /home/czmasek/DATA/SEQUENCES/GENOMES/PROTIST/GeneDB_Etenella_Proteins
138 PLACH /home/czmasek/DATA/SEQUENCES/GENOMES/PROTIST/PchabaudiAnnotatedProteins_plasmoDB-5.3.fasta
139 PLAFA /home/czmasek/DATA/SEQUENCES/GENOMES/PROTIST/PfalciparumAnnotatedProteins_plasmoDB-5.3.fasta
140 PLAYO /home/czmasek/DATA/SEQUENCES/GENOMES/PROTIST/PLAYO_PYA1.pep
141 PLAVI /home/czmasek/DATA/SEQUENCES/GENOMES/PROTIST/PvivaxAnnotatedProteins_PlasmoDB-5.5.fasta
142 THEPA /home/czmasek/DATA/SEQUENCES/GENOMES/PROTIST/THEPA.fasta
143 THEAN /home/czmasek/DATA/SEQUENCES/GENOMES/PROTIST/TANN.GeneDB.pep
144 EMIHU /home/czmasek/DATA/SEQUENCES/GENOMES/PROTIST/Emihu1_best_proteins.fasta
145 TRYBB /home/czmasek/DATA/SEQUENCES/GENOMES/PROTIST/TBA1.pep
146 LEIMA /home/czmasek/DATA/SEQUENCES/GENOMES/PROTIST/LEIMA_GeneDB_Protein_database_110506
147 GIALA /home/czmasek/DATA/SEQUENCES/GENOMES/PROTIST/GlambliaAnnotatedProteins_GiardiaDB-1.0.fasta
148 TRIVA /home/czmasek/DATA/SEQUENCES/GENOMES/PROTIST/TvaginalisAnnotatedProteins_TrichDB-1.0.fasta
149 NAEGR /home/czmasek/DATA/SEQUENCES/GENOMES/JGI/Naegr1_best_proteins.fasta
150 SULSO /home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/SULSO_AE006641.faa
151 SULTO /home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/SULTO_BA000023.faa
152 SULAC /home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/SULAC_CP000077.faa
153 METS5 /home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/METS5_NC_009440.faa
154 AERPE /home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/AERPE_BA000002.faa
155 HYPBU /home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/HYPBU_NC_008818.faa
156 IGNH4 /home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/IGNH4_NC_009776.faa
157 STAMF /home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/STAMF_NC_009033.faa
158 PYRAE /home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/PYRAE_AE009441.faa
159 PYRAR /home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/PYRAR_NC_009376.faa
160 PYRCJ /home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/PYRCJ_NC_009073.faa
161 PYRIL /home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/PYRIL_NC_008701.faa
162 CALMA /home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/CALMA_NC_009954.faa
163 THEPD /home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/THEPD_NC_008698.faa
164 THENV /home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/THENV_NC_010525.faa
165 NITMA /home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/NITMA_NC_010085.faa
166 METJA /home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/METJA_m_jannaschii_dsm2661.pep
167 METMP /home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/METMP_BX950229.faa
168 META3 /home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/META3_NC_009635.faa
169 METVS /home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/METVS_NC_009634.faa
170 PYRFU /home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/PYRFU_AE009950.faa
171 PYRAB /home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/PYRAB_AL096836.faa
172 PYRHO /home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/PYRHO_BA000001.faa
173 THEKO /home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/THEKO_AP006878.faa
174 THEON /home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/THEON_NC_011529.faa
175 METMA /home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/METMA_AE008384.faa
176 METAC /home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/METAC_AE010299.faa
177 METBF /home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/METBF_CP000099.faa
178 METBU /home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/METBU_CP000300.faa
179 METTP /home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/METTP_NC_008553.faa
180 METHU /home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/METHU_CP000254.faa
181 METLZ /home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/METLZ_NC_008942.faa
182 METMJ /home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/METMJ_NC_009051.faa
183 METB6 /home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/METB6_NC_009712.faa
184 NATPH /home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/NATPH_CR936257.faa
185 HALSP /home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/HALSP_AE004437.faa
186 HALS3 /home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/HALS3.fasta
187 HALMA /home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/HALMA_AY596297.faa
188 HALWD /home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/HALWD_AM180088.faa
189 ARCFU /home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/ARCFU_AE000782.faa
190 THEVO /home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/THEVO_BA000011.faa
191 THEAC /home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/THEAC_AL139299.faa
192 PICTO /home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/PICTO_AE017261.faa
193 METTH /home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/METTH_AE000666.faa
194 METST /home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/METST_CP000102.faa
195 METS3 /home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/METS3_NC_009515.faa
196 METKA /home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/METKA_AE009439.faa
197 KORCR /home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/KORCR_NC_010482.faa
198 NANEQ /home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/NANEQ_AE017199.faa
199 BACSU /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/BACSU_SLR16.1_prot.txt
200 BACAN /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/BACAN_ames.pep
201 GEOKA /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/GEOKA_BA000043.faa
202 BACHD /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/BACHD_NC_002570.faa
203 LISMO /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/LISMO_4b_h7858.pep
204 STAAU /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/STAAU_AJ938182.faa
205 CLOP1 /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/CLOP1_c_perfringens_atcc13124.pep
206 DESHA /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/DESHA_AP008230.faa
207 CARHZ /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/CARHZ_2901.pep
208 THETN /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/THETN_AE008691.faa
209 LACAC /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/LACAC_CP000033.faa
210 STRPN /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/STRPN_s_pneumoniae_tigr4.pep
211 STRPY /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/STRPY_AE009949.faa
212 LACLA /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/LACLA_NC_002662.faa
213 MESFL /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/MESFL_AE017263.faa
214 MYCPN /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/MYCPN_U00089.faa
215 MYCGE /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/MYCGE_g_37.pep
216 UREPA /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/UREPA_NC_010503.faa
217 PELUB /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/PELUB_CP000084.faa
218 RICTY /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/RICTY_AE017197.faa
219 CAUCR /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/CAUCR_c_crescentus_cb15.pep
220 ROSDO /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/ROSDO_CP000362.faa
221 RHOS1 /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/RHOS1.faa
222 BRAJA /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/BRAJA_BA000040.faa
223 SINME /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/SINME.faa
224 RHIEC /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/RHIEC.faa
225 AGRT5 /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/AGRT5.faa
226 BARHE /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/BARHE_BX897699.faa
227 RHOPT /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/RHOPT_NC_011004.faa
228 RHORU /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/RHORU_CP000230.faa
229 ACICY /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/ACICY.fasta
230 THIDE /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/THIDE_CP000116.faa
231 NITMU /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/NITMU_CP000103.faa
232 NITEU /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/NITEU_AL954747.faa
233 DECAR /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/DECAR_CP000089.faa
234 RALME /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/RALME.faa
235 RHOFT /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/RHOFT_NC_007901.faa
236 NEIME /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/NEIME_AL157959.faa
237 DESDE /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/DESDE_CP000112.faa
238 GEOME /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/GEOME_CP000148.faa
239 GEOSL /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/GEOSL_AE017180.faa
240 ANADE /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/ANADE_CP000251.faa
241 MYXXA /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/MYXXA_CP000113.faa
242 SYNAS /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/SYNAS_CP000252.faa
243 DESOL /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/DESOL_NC_009943.faa
244 DESPS /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/DESPS.faa
245 HELPH /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/HELPH_CP000241.faa
246 CAMJE /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/CAMJE_c_jejuni_rm1221.pep
247 THIDN /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/THIDN_CP000153.faa
248 NITSB /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/NITSB_NC_009662.faa
249 SULNB /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/SULNB_NC_009663.faa
250 ECOLI /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/ECOLI_U00096.faa
251 ECO57 /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/ECO57_AE005174.faa
252 PHOLU /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/PHOLU_BX470251.faa
253 SALTY /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/SALTY.faa
254 SHIFL /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/SHIFL_AE014073.faa
255 YERPE /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/YERPE.faa
256 PASMU /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/PASMU_AE004439.faa
257 HAEIN /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/HAEIN_kw20_rd.pep
258 LEGPN /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/LEGPN.faa
259 THICR /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/THICR_CP000109.faa
260 PHOPR /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/PHOPR_CR354531.faa
261 VIBCH /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/VIBCH_el_tor_n16961.pep
262 PSEF5 /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/PSEF5_pf_5.pep
263 PSEPF /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/PSEPF_CP000094.faa
264 PSEAE /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/PSEAE_AE004091.faa
265 CHRSD /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/CHRSD_CP000285.faa
266 XANAC /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/XANAC_AE008923.faa
267 XYLFT /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/XYLFT_AE009442.faa
268 ACIFE /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/ACIFE_atcc_23270.pep
269 NITOC /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/NITOC.faa
270 ALHEH /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/ALHEH_NC_008340.faa
271 HALHL /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/HALHL_NC_008789.faa
272 IDILO /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/IDILO_AE017340.faa
273 SHEDO /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/SHEDO_CP000302.faa
274 FRATU /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/FRATU_AJ749949.faa
275 BIFLO /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/BIFLO_AE014295.faa
276 CORJK /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/CORJK_CR931997.faa
277 MYCTU /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/MYCTU_m_tuberculosis_cdc1551.pep
278 STRCO /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/STRCO_48_82.faa
279 RHOR1 /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/RHOR1.faa
280 MYCLE /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/MYCLE_NC_002677.faa
281 THEFY /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/THEFY_CP000088.faa
282 KOCRD /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/KOCRD_NC_010617.faa
283 KINRD /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/KINRD
284 RUBXD /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/RUBXD_CP000386.faa
285 AQUAE /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/AQUAE_AE000657.faa
286 HYDY0 /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/HYDY0_NC_011126.faa
287 SULYO /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/SULYO_NC_010730.faa
288 THEMA /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/THEMA_t_maritima_msb8.pep
289 THELT /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/THELT_NC_009828.faa
290 FERNB /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/FERNB_NC_009718.faa
291 SALRD /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/SALRD_s_ruber.pep
292 CYTH3 /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/CYTH3_CP000383.faa
293 BACFR /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/BACFR_AP006841.faa
294 BACTN /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/BACTN_AE015928.faa
295 PORGI /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/PORGI_w83.pep
296 FLAJO /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/FLAJO_NC_009441.faa
297 GRAFK /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/GRAFK_NC_008571.faa
298 CHLTE /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/CHLTE_c_tepidum_tls.pep
299 CHLP8 /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/CHLP8_NC_011027.faa
300 CHLTA /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/CHLTA_NC_011026.faa
301 CHLPB /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/CHLPB_NC_010831.faa
302 PROVI /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/PROVI_NC_009337.faa
303 CHLCH /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/CHLCH_CP000108.faa
304 PELLU /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/PELLU_CP000096.faa
305 PROAE /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/PROAE
306 DEHE1 /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/DEHE1_d_ethenogenes_195.pep
307 DEHSB /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/DEHSB_NC_009455.faa
308 CHLAU /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/CHLAU_NC_010175.faa
309 ROSCA /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/ROSCA_NC_009767.faa
310 HERAU /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/HERAU.faa
311 DEIRA /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/DEIRA_d_radiodurans_r1.pep
312 DEIGD /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/DEIGD_58_59_56.faa
313 THETH /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/THETH_AE01722x.faa
314 SYNEL /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/SYNEL_AP008231.faa
315 SYNS3 /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/SYNS3_synechococcus_cc9311.pep
316 CYAA2 /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/CYAA2
317 MICAN /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/MICAN_NC_010296.faa
318 SYNY3 /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/SYNY3
319 THEEL /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/THEEL_NC_004113.faa
320 NOSS7 /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/NOSS7_BA000019.faa
321 NOSP7 /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/NOSP7
322 ANAVA /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/ANAVA.faa
323 GLOVI /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/GLOVI_NC_005125.faa
324 PROMA /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/PROMA_NC_008816.faa
325 PROMP /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/PROMP_NC_005072.faa
326 PROMM /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/PROMM_NC_005042.faa
327 TRIER /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/TRIER_NC_008312.faa
328 ACAMR /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/ACAMR.fasta
329 BORBU /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/BORBU_b_burgdorferi_b31.pep
330 TREPA /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/TREPA_t_pallidum_nichols.pep
331 LEPIC /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/LEPIC
332 CHLPN /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/CHLPN_c_pneumoniae_ar39.pep
333 CHLMU /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/CHLMU_NC_002620.faa
334 CHLFF /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/CHLFF_AP006861.faa
335 FUSNU /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/FUSNU_AE009951.faa
336 SOLUS /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/SOLUS_NC_008536.faa
337 ACIBL /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/ACIBL_NC_008009.faa
338 RHOBA /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/RHOBA_NC_005027.faa
339 OPITE /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/OPITE_NC_010571.faa
340 METI4 /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/METI4_NC_010794.faa
341 AKKM8 /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/AKKM8_NC_010655.faa
342 DICT6 /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/DICT6_NC_011297.faa
343 THEYD /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/THEYD_NC_011296.faa
git://source.jalview.org / jalview.git / blob