forester/data/tol_102.xml

   1 <?xml version="1.0" encoding="UTF-8"?>
   2 <phyloxml xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.phyloxml.org http://www.phyloxml.org/1.10/phyloxml.xsd" xmlns="http://www.phyloxml.org">
   3 <phylogeny rooted="true" rerootable="false">
   4   <clade>
   5     <name>cellular_organisms</name>
   6     <clade>
   7       <name>Neomura</name>
   8       <clade>
   9         <name>Eukaryota</name>
  10         <clade>
  11           <name>Unikonta</name>
  12           <clade>
  13             <name>Opisthokonta</name>
  14             <clade>
  15               <name>Metazoa_Choanoflagellata</name>
  16               <clade>
  17                 <name>Metazoa</name>
  18                 <reference doi="10.1038/nature06614">
  19                 </reference>
  20                 <clade>
  21                   <name>Bilateria_Cnidaria</name>
  22                   <clade>
  23                     <name>Bilateria</name>
  24                     <clade>
  25                       <name>Deuterostomia</name>
  26                       <reference doi="10.1038/nature04336">
  27                       </reference>
  28                       <clade>
  29                         <name>Chordata</name>
  30                         <clade>
  31                           <name>Urochordata_Vertebrata</name>
  32                           <clade>
  33                             <name>Vertebrata</name>
  34                             <clade>
  35                               <name>Tetrapoda</name>
  36                               <clade>
  37                                 <name>Amniota</name>
  38                                 <taxonomy>
  39                                   <id provider="tol">14990</id>
  40                                   <scientific_name>Amniota</scientific_name>
  41                                 </taxonomy>
  42                                 <clade>
  43                                   <name>Mammalia</name>
  44                                   <clade>
  45                                     <name>Theria</name>
  46                                     <clade>
  47                                       <name>Eutheria</name>
  48                                       <clade>
  49                                         <name>Euarchontoglires</name>
  50                                         <clade>
  51                                           <name>Primates</name>
  52                                           <clade>
  53                                             <name>HUMAN</name>
  54                                           </clade>
  55                                           <clade>
  56                                             <name>PANTR</name>
  57                                           </clade>
  58                                         </clade>
  59                                         <clade>
  60                                           <name>Rodentia</name>
  61                                           <clade>
  62                                             <name>MOUSE</name>
  63                                           </clade>
  64                                           <clade>
  65                                             <name>RAT</name>
  66                                           </clade>
  67                                         </clade>
  68                                       </clade>
  69                                       <clade>
  70                                         <name>CANFA</name>
  71                                       </clade>
  72                                     </clade>
  73                                     <clade>
  74                                       <name>MONDO</name>
  75                                     </clade>
  76                                   </clade>
  77                                   <clade>
  78                                     <name>ORNAN</name>
  79                                   </clade>
  80                                 </clade>
  81                                 <clade>
  82                                   <name>Diapsida</name>
  83                                   <taxonomy>
  84                                     <id provider="tol">14866</id>
  85                                     <scientific_name>Diapsida</scientific_name>
  86                                   </taxonomy>
  87                                   <clade>
  88                                     <name>Neognathae</name>
  89                                     <taxonomy>
  90                                       <id provider="uniprot">8825</id>
  91                                       <scientific_name>Neognathae</scientific_name>
  92                                       <rank>superorder</rank>
  93                                     </taxonomy>
  94                                     <clade>
  95                                       <name>CHICK</name>
  96                                       <taxonomy>
  97                                         <id provider="eol">10199408</id>
  98                                         <code>CHICK</code>
  99                                         <scientific_name>Gallus gallus</scientific_name>
 100                                         <common_name>Chicken</common_name>
 101                                         <synonym>Gallus domesticus</synonym>
 102                                       </taxonomy>
 103                                     </clade>
 104                                     <clade>
 105                                       <name>TAEGU</name>
 106                                       <taxonomy>
 107                                         <id provider="uniprot">59729</id>
 108                                         <code>TAEGU</code>
 109                                         <scientific_name>Taeniopygia guttata</scientific_name>
 110                                         <common_name>Zebra finch</common_name>
 111                                         <synonym>Poephila guttata</synonym>
 112                                         <rank>species</rank>
 113                                       </taxonomy>
 114                                     </clade>
 115                                   </clade>
 116                                   <clade>
 117                                     <name>ANOCA</name>
 118                                     <taxonomy>
 119                                       <id provider="eol">795869</id>
 120                                       <code>ANOCA</code>
 121                                       <scientific_name>Anolis carolinensis</scientific_name>
 122                                       <authority>Voigt, 1832</authority>
 123                                       <common_name>Green anole</common_name>
 124                                       <synonym>American chameleon</synonym>
 125                                       <rank>species</rank>
 126                                     </taxonomy>
 127                                   </clade>
 128                                 </clade>
 129                               </clade>
 130                               <clade>
 131                                 <name>XENTR</name>
 132                               </clade>
 133                             </clade>
 134                             <clade>
 135                               <name>Teleostei</name>
 136                               <clade>
 137                                 <name>Euteleostei</name>
 138                                 <clade>
 139                                   <name>Smegmamorpha</name>
 140                                   <taxonomy>
 141                                     <id provider="ncbi">129949</id>
 142                                   </taxonomy>
 143                                   <clade>
 144                                     <name>GASAC</name>
 145                                   </clade>
 146                                   <clade>
 147                                     <name>ORYLA</name>
 148                                   </clade>
 149                                 </clade>
 150                                 <clade>
 151                                   <name>Tetraodontiformes</name>
 152                                   <clade>
 153                                     <name>FUGRU</name>
 154                                   </clade>
 155                                   <clade>
 156                                     <name>TETNG</name>
 157                                   </clade>
 158                                 </clade>
 159                               </clade>
 160                               <clade>
 161                                 <name>DANRE</name>
 162                               </clade>
 163                             </clade>
 164                           </clade>
 165                           <clade>
 166                             <name>Urochordata</name>
 167                             <taxonomy>
 168                               <id provider="ncbi">7712</id>
 169                               <scientific_name>Urochordata</scientific_name>
 170                               <common_name>tunicates</common_name>
 171                             </taxonomy>
 172                             <clade>
 173                               <name>Ascidiacea</name>
 174                               <taxonomy>
 175                                 <id provider="ncbi">7713</id>
 176                                 <scientific_name>Ascidiacea</scientific_name>
 177                                 <common_name>sea squirts</common_name>
 178                               </taxonomy>
 179                               <clade>
 180                                 <name>CIOIN</name>
 181                               </clade>
 182                               <clade>
 183                                 <name>CIOSA</name>
 184                               </clade>
 185                             </clade>
 186                             <clade>
 187                               <name>OIKDI</name>
 188                               <taxonomy>
 189                                 <id provider="ncbi">34765</id>
 190                                 <scientific_name>Oikopleura dioica</scientific_name>
 191                               </taxonomy>
 192                             </clade>
 193                           </clade>
 194                         </clade>
 195                         <clade>
 196                           <name>BRAFL</name>
 197                         </clade>
 198                       </clade>
 199                       <clade>
 200                         <name>STRPU</name>
 201                       </clade>
 202                     </clade>
 203                     <clade>
 204                       <name>Protostomia</name>
 205                       <clade>
 206                         <name>Ecdysozoa</name>
 207                         <clade>
 208                           <name>Arthropoda</name>
 209                           <clade>
 210                             <name>Insecta</name>
 211                             <clade>
 212                               <name>Neoptera</name>
 213                               <taxonomy>
 214                                 <id provider="tol">8267</id>
 215                                 <scientific_name>Neoptera</scientific_name>
 216                                 <rank>subclass</rank>
 217                               </taxonomy>
 218                               <clade>
 219                                 <name>Endopterygota</name>
 220                                 <taxonomy>
 221                                   <id provider="eol">3016961</id>
 222                                   <scientific_name>Endopterygota</scientific_name>
 223                                   <synonym>Holometabola</synonym>
 224                                   <rank>infraclass</rank>
 225                                   <uri>http://tolweb.org/Endopterygota/</uri>
 226                                 </taxonomy>
 227                                 <clade>
 228                                   <name>Lepidoptera_Diptera</name>
 229                                   <clade>
 230                                     <name>Diptera</name>
 231                                     <clade>
 232                                       <name>Culicoidea</name>
 233                                       <clade>
 234                                         <name>AEDAE</name>
 235                                       </clade>
 236                                       <clade>
 237                                         <name>ANOGA</name>
 238                                       </clade>
 239                                       <clade>
 240                                         <name>CULPI</name>
 241                                       </clade>
 242                                     </clade>
 243                                     <clade>
 244                                       <name>Muscomorpha</name>
 245                                       <clade>
 246                                         <name>DROME</name>
 247                                       </clade>
 248                                       <clade>
 249                                         <name>DROPS</name>
 250                                       </clade>
 251                                     </clade>
 252                                   </clade>
 253                                   <clade>
 254                                     <name>BOMMO</name>
 255                                   </clade>
 256                                 </clade>
 257                                 <clade>
 258                                   <name>Hymenoptera</name>
 259                                   <clade>
 260                                     <name>APIME</name>
 261                                   </clade>
 262                                   <clade>
 263                                     <name>NASVI</name>
 264                                   </clade>
 265                                 </clade>
 266                               </clade>
 267                               <clade>
 268                                 <name>ACYPI</name>
 269                                 <taxonomy>
 270                                   <id provider="uniprot">7029</id>
 271                                   <code>ACYPI</code>
 272                                   <scientific_name>Acyrthosiphon pisum</scientific_name>
 273                                   <common_name>Pea aphid</common_name>
 274                                   <synonym>Acyrhosiphum pisum</synonym>
 275                                   <rank>species</rank>
 276                                 </taxonomy>
 277                               </clade>
 278                             </clade>
 279                             <clade>
 280                               <name>TRICA</name>
 281                             </clade>
 282                           </clade>
 283                           <clade>
 284                             <name>DAPPU</name>
 285                           </clade>
 286                         </clade>
 287                         <clade>
 288                           <name>Nematoda</name>
 289                           <taxonomy>
 290                             <id provider="tol">2472</id>
 291                             <scientific_name>Nematoda</scientific_name>
 292                           </taxonomy>
 293                           <reference doi="10.1038/32160">
 294                           </reference>
 295                           <clade>
 296                             <name>nematode Clade V</name>
 297                             <clade>
 298                               <name>Caenorhabditis</name>
 299                               <taxonomy>
 300                                 <scientific_name>Caenorhabditis</scientific_name>
 301                               </taxonomy>
 302                               <clade>
 303                                 <name>CAEEL</name>
 304                               </clade>
 305                               <clade>
 306                                 <name>CAEBR</name>
 307                               </clade>
 308                             </clade>
 309                             <clade>
 310                               <name>PRIPA</name>
 311                               <taxonomy>
 312                                 <code>PRIPA</code>
 313                               </taxonomy>
 314                             </clade>
 315                           </clade>
 316                           <clade>
 317                             <name>BRUMA</name>
 318                             <taxonomy>
 319                               <code>BRUMA</code>
 320                             </taxonomy>
 321                           </clade>
 322                         </clade>
 323                       </clade>
 324                       <clade>
 325                         <name>Lophotrochozoa</name>
 326                         <clade>
 327                           <name>Annelida_Mollusca</name>
 328                           <clade>
 329                             <name>Annelida</name>
 330                             <clade>
 331                               <name>CAP</name>
 332                             </clade>
 333                             <clade>
 334                               <name>HELRO</name>
 335                             </clade>
 336                           </clade>
 337                           <clade>
 338                             <name>LOTGI</name>
 339                           </clade>
 340                         </clade>
 341                         <clade>
 342                           <name>Platyhelminthes</name>
 343                           <clade>
 344                             <name>SCHMA</name>
 345                           </clade>
 346                           <clade>
 347                             <name>SCHMD</name>
 348                           </clade>
 349                         </clade>
 350                       </clade>
 351                     </clade>
 352                   </clade>
 353                   <clade>
 354                     <name>Cnidaria</name>
 355                     <taxonomy>
 356                       <id provider="uniprot">6073</id>
 357                       <scientific_name>Cnidaria</scientific_name>
 358                     </taxonomy>
 359                     <clade>
 360                       <name>NEMVE</name>
 361                     </clade>
 362                     <clade>
 363                       <name>HYDMA</name>
 364                       <taxonomy>
 365                         <id provider="eol">9119928</id>
 366                         <code>HYDMA</code>
 367                         <scientific_name>Hydra magnipapillata</scientific_name>
 368                         <authority>Ito, 1947</authority>
 369                         <rank>species</rank>
 370                         <uri>http://www.nig.ac.jp/labs/OntoGen/magni.html</uri>
 371                       </taxonomy>
 372                     </clade>
 373                   </clade>
 374                 </clade>
 375                 <clade>
 376                   <name>TRIAD</name>
 377                   <reference doi="10.1073/pnas.0602076103">
 378                   </reference>
 379                 </clade>
 380               </clade>
 381               <clade>
 382                 <name>MONBE</name>
 383               </clade>
 384             </clade>
 385             <clade>
 386               <name>Fungi</name>
 387               <clade>
 388                 <name>Dikarya_Mucoromycotina_Chytridiomycota</name>
 389                 <clade>
 390                   <name>Dikarya_Mucoromycotina</name>
 391                   <clade>
 392                     <name>Dikarya</name>
 393                     <taxonomy>
 394                       <id provider="uniprot">451864</id>
 395                       <scientific_name>Dikarya</scientific_name>
 396                     </taxonomy>
 397                     <clade>
 398                       <name>Ascomycota</name>
 399                       <clade>
 400                         <name>Pezizomycotina</name>
 401                         <taxonomy>
 402                           <id provider="uniprot">147538</id>
 403                           <scientific_name>Pezizomycotina</scientific_name>
 404                           <synonym>Euascomycota</synonym>
 405                           <rank>subphylum</rank>
 406                         </taxonomy>
 407                         <clade>
 408                           <name>Sordariomycetes_Dothideomycetes_Eurotiales</name>
 409                           <clade>
 410                             <name>Sordariomycetes_Dothideomycetes</name>
 411                             <clade>
 412                               <name>Sordariomycetes</name>
 413                               <taxonomy>
 414                                 <id provider="uniprot">147550</id>
 415                                 <scientific_name>Sordariomycetes</scientific_name>
 416                                 <synonym>Pyrenomycetes</synonym>
 417                                 <rank>class</rank>
 418                               </taxonomy>
 419                               <clade>
 420                                 <name>Magnaporthales_Hypocreales</name>
 421                                 <clade>
 422                                   <name>Hypocreales</name>
 423                                   <taxonomy>
 424                                     <id provider="uniprot">5125</id>
 425                                     <scientific_name>Hypocreales</scientific_name>
 426                                     <synonym>pyrenomycetes</synonym>
 427                                     <rank>order</rank>
 428                                   </taxonomy>
 429                                   <clade>
 430                                     <name>TRIVE</name>
 431                                   </clade>
 432                                   <clade>
 433                                     <name>GIBZE</name>
 434                                   </clade>
 435                                 </clade>
 436                                 <clade>
 437                                   <name>MAGGR</name>
 438                                 </clade>
 439                               </clade>
 440                               <clade>
 441                                 <name>Sordariales</name>
 442                                 <taxonomy>
 443                                   <id provider="uniprot">5139</id>
 444                                   <scientific_name>Sordariales</scientific_name>
 445                                   <synonym>pyrenonmycetes</synonym>
 446                                   <rank>order</rank>
 447                                 </taxonomy>
 448                                 <clade>
 449                                   <name>Chaetomiaceae</name>
 450                                   <taxonomy>
 451                                     <id provider="uniprot">35718</id>
 452                                     <scientific_name>Chaetomiaceae</scientific_name>
 453                                     <rank>family</rank>
 454                                   </taxonomy>
 455                                   <clade>
 456                                     <name>CHAGB</name>
 457                                     <taxonomy>
 458                                       <id provider="eol">1029505</id>
 459                                       <code>CHAGB</code>
 460                                       <scientific_name>Chaetomium globosum</scientific_name>
 461                                       <authority>Kunze 1817</authority>
 462                                       <common_name>Soil fungus</common_name>
 463                                       <rank>species</rank>
 464                                     </taxonomy>
 465                                   </clade>
 466                                   <clade>
 467                                     <name>THITE</name>
 468                                     <taxonomy>
 469                                       <id provider="eol">193532</id>
 470                                       <code>THITE</code>
 471                                       <scientific_name>Thielavia terrestris</scientific_name>
 472                                       <authority>Malloch &amp; Cain 1972</authority>
 473                                       <synonym>Acremonium alabamense</synonym>
 474                                       <rank>species</rank>
 475                                     </taxonomy>
 476                                   </clade>
 477                                 </clade>
 478                                 <clade>
 479                                   <name>NEUCR</name>
 480                                 </clade>
 481                               </clade>
 482                             </clade>
 483                             <clade>
 484                               <name>Dothideomycetes</name>
 485                               <taxonomy>
 486                                 <id provider="uniprot">147541</id>
 487                                 <scientific_name>Dothideomycetes</scientific_name>
 488                                 <synonym>Loculoascomycetes</synonym>
 489                                 <synonym>bitunicate ascomycetes</synonym>
 490                                 <rank>class</rank>
 491                               </taxonomy>
 492                               <clade>
 493                                 <name>Pleosporales</name>
 494                                 <taxonomy>
 495                                   <id provider="uniprot">92860</id>
 496                                   <scientific_name>Pleosporales</scientific_name>
 497                                   <synonym>Melanommatales</synonym>
 498                                   <rank>order</rank>
 499                                 </taxonomy>
 500                                 <clade>
 501                                   <name>Pleosporaceae</name>
 502                                   <taxonomy>
 503                                     <id provider="uniprot">28556</id>
 504                                     <scientific_name>Pleosporaceae</scientific_name>
 505                                     <synonym>Pyrenophoraceae</synonym>
 506                                     <rank>family</rank>
 507                                   </taxonomy>
 508                                   <clade>
 509                                     <name>PYRTR</name>
 510                                   </clade>
 511                                   <clade>
 512                                     <name>COCHE</name>
 513                                   </clade>
 514                                 </clade>
 515                                 <clade>
 516                                   <name>PHANO</name>
 517                                 </clade>
 518                               </clade>
 519                               <clade>
 520                                 <name>Mycosphaerella</name>
 521                                 <taxonomy>
 522                                   <id provider="uniprot">41254</id>
 523                                   <scientific_name>Mycosphaerella</scientific_name>
 524                                   <rank>genus</rank>
 525                                 </taxonomy>
 526                                 <clade>
 527                                   <name>MYCFI</name>
 528                                 </clade>
 529                                 <clade>
 530                                   <name>MYCGR</name>
 531                                 </clade>
 532                               </clade>
 533                             </clade>
 534                           </clade>
 535                           <clade>
 536                             <name>Eurotiales</name>
 537                             <taxonomy>
 538                               <id provider="uniprot">5042</id>
 539                               <scientific_name>Eurotiales</scientific_name>
 540                               <common_name>green and blue molds</common_name>
 541                               <synonym>Elaphomycetales</synonym>
 542                               <rank>order</rank>
 543                             </taxonomy>
 544                             <clade>
 545                               <name>Neosartorya_Emericella</name>
 546                               <clade>
 547                                 <name>NEOFI</name>
 548                               </clade>
 549                               <clade>
 550                                 <name>EMENI</name>
 551                                 <taxonomy>
 552                                   <id provider="eol">195546</id>
 553                                   <code>EMENI</code>
 554                                   <scientific_name>Emericella nidulans</scientific_name>
 555                                   <authority>Vuill. 1927</authority>
 556                                   <synonym>Aspergillus nidulans</synonym>
 557                                   <rank>species</rank>
 558                                 </taxonomy>
 559                               </clade>
 560                             </clade>
 561                             <clade>
 562                               <name>Aspergillus</name>
 563                               <taxonomy>
 564                                 <id provider="uniprot">5052</id>
 565                                 <scientific_name>Aspergillus</scientific_name>
 566                               </taxonomy>
 567                               <clade>
 568                                 <name>ASPFL</name>
 569                               </clade>
 570                               <clade>
 571                                 <name>ASPNG</name>
 572                               </clade>
 573                             </clade>
 574                           </clade>
 575                         </clade>
 576                         <clade>
 577                           <name>Onygenales</name>
 578                           <taxonomy>
 579                             <id provider="uniprot">33183</id>
 580                             <scientific_name>Onygenales</scientific_name>
 581                             <synonym>Gymnoascales</synonym>
 582                             <rank>order</rank>
 583                           </taxonomy>
 584                           <clade>
 585                             <name>COCIM</name>
 586                           </clade>
 587                           <clade>
 588                             <name>UNCRE</name>
 589                           </clade>
 590                         </clade>
 591                       </clade>
 592                       <clade>
 593                         <name>Saccharomycotina_Taphrinomycotina</name>
 594                         <clade>
 595                           <name>Saccharomycotina</name>
 596                           <taxonomy>
 597                             <scientific_name>Saccharomycotina</scientific_name>
 598                             <rank>subphylum</rank>
 599                           </taxonomy>
 600                           <clade>
 601                             <name>Saccharomycetaceae</name>
 602                             <taxonomy>
 603                               <id provider="uniprot">4893</id>
 604                               <scientific_name>Saccharomycetaceae</scientific_name>
 605                             </taxonomy>
 606                             <clade>
 607                               <name>YEAST</name>
 608                             </clade>
 609                             <clade>
 610                               <name>SACCA</name>
 611                             </clade>
 612                           </clade>
 613                           <clade>
 614                             <name>YARLI</name>
 615                           </clade>
 616                         </clade>
 617                         <clade>
 618                           <name>Taphrinomycotina</name>
 619                           <clade>
 620                             <name>SCHPO</name>
 621                           </clade>
 622                           <clade>
 623                             <name>SCHJP</name>
 624                           </clade>
 625                         </clade>
 626                       </clade>
 627                     </clade>
 628                     <clade>
 629                       <name>Basidiomycota</name>
 630                       <taxonomy>
 631                         <id provider="uniprot">5204</id>
 632                         <scientific_name>Basidiomycota</scientific_name>
 633                         <rank>phylum</rank>
 634                       </taxonomy>
 635                       <clade>
 636                         <name>Pucciniomycotina_Agaricomycotina</name>
 637                         <clade>
 638                           <name>Agaricomycotina</name>
 639                           <taxonomy>
 640                             <id provider="uniprot">5302</id>
 641                             <scientific_name>Agaricomycotina</scientific_name>
 642                           </taxonomy>
 643                           <clade>
 644                             <name>Homobasidiomycetes</name>
 645                             <taxonomy>
 646                               <id provider="uniprot">155619</id>
 647                               <scientific_name>Homobasidiomycetes</scientific_name>
 648                             </taxonomy>
 649                             <clade>
 650                               <name>Agaricales</name>
 651                               <taxonomy>
 652                                 <id provider="uniprot">5338</id>
 653                                 <scientific_name>Agaricales</scientific_name>
 654                                 <rank>order</rank>
 655                               </taxonomy>
 656                               <clade>
 657                                 <name>COPCI</name>
 658                               </clade>
 659                               <clade>
 660                                 <name>LACBI</name>
 661                               </clade>
 662                               <clade>
 663                                 <name>PLEOS</name>
 664                                 <taxonomy>
 665                                   <id provider="uniprot">5322</id>
 666                                   <code>PLEOS</code>
 667                                   <scientific_name>Pleurotus ostreatus</scientific_name>
 668                                   <common_name>Oyster mushroom</common_name>
 669                                   <rank>species</rank>
 670                                 </taxonomy>
 671                               </clade>
 672                             </clade>
 673                             <clade>
 674                               <name>POSPL</name>
 675                               <taxonomy>
 676                                 <id provider="uniprot">104341</id>
 677                                 <scientific_name>Postia placenta</scientific_name>
 678                               </taxonomy>
 679                             </clade>
 680                           </clade>
 681                           <clade>
 682                             <name>Tremellomycetes</name>
 683                             <taxonomy>
 684                               <id provider="uniprot">155616</id>
 685                               <scientific_name>Tremellomycetes</scientific_name>
 686                               <rank>class</rank>
 687                             </taxonomy>
 688                             <clade>
 689                               <name>CRYNE</name>
 690                             </clade>
 691                             <clade>
 692                               <name>TREME</name>
 693                               <taxonomy>
 694                                 <id provider="eol">1029985</id>
 695                                 <code>TREME</code>
 696                                 <scientific_name>Tremella mesenterica</scientific_name>
 697                                 <authority>Pers. 1800</authority>
 698                                 <common_name>Jelly fungus</common_name>
 699                                 <synonym>Yellow Brain</synonym>
 700                                 <synonym>Tremella lutescens</synonym>
 701                                 <rank>species</rank>
 702                               </taxonomy>
 703                             </clade>
 704                           </clade>
 705                         </clade>
 706                         <clade>
 707                           <name>Pucciniomycotina</name>
 708                           <taxonomy>
 709                             <id provider="uniprot">29000</id>
 710                             <scientific_name>Pucciniomycotina</scientific_name>
 711                             <synonym>Urediniomycetes</synonym>
 712                             <rank>subphylum</rank>
 713                           </taxonomy>
 714                           <clade>
 715                             <name>Pucciniomycetes</name>
 716                             <taxonomy>
 717                               <id provider="uniprot">162484</id>
 718                               <scientific_name>Pucciniomycetes</scientific_name>
 719                               <synonym>Urediniomycetidae</synonym>
 720                               <rank>subclass</rank>
 721                             </taxonomy>
 722                             <clade>
 723                               <name>PUCGR</name>
 724                               <taxonomy>
 725                                 <id provider="eol">1029947</id>
 726                                 <code>PUCGR</code>
 727                                 <scientific_name>Puccinia graminis</scientific_name>
 728                                 <authority>Pers. 1794</authority>
 729                                 <common_name>Black stem rust fungus</common_name>
 730                                 <synonym>Wheat rust</synonym>
 731                                 <rank>species</rank>
 732                               </taxonomy>
 733                             </clade>
 734                             <clade>
 735                               <name>MELLP</name>
 736                               <taxonomy>
 737                                 <id provider="eol">156696</id>
 738                                 <code>MELLP</code>
 739                                 <scientific_name>Melampsora laricis-populina</scientific_name>
 740                                 <authority>Kleb. 1902</authority>
 741                                 <synonym>Melampsora larici-populina</synonym>
 742                                 <synonym>Melampsora laricipopulina</synonym>
 743                                 <rank>species</rank>
 744                               </taxonomy>
 745                             </clade>
 746                           </clade>
 747                           <clade>
 748                             <name>SPORO</name>
 749                             <taxonomy>
 750                               <id provider="eol">1013696</id>
 751                               <scientific_name>Sporobolomyces roseus</scientific_name>
 752                               <authority>Kluyver &amp; C. B. Niel 1924</authority>
 753                               <rank>species</rank>
 754                             </taxonomy>
 755                           </clade>
 756                         </clade>
 757                       </clade>
 758                       <clade>
 759                         <name>USTMA</name>
 760                       </clade>
 761                     </clade>
 762                   </clade>
 763                   <clade>
 764                     <name>Mucoromycotina</name>
 765                     <taxonomy>
 766                       <id provider="uniprot">451507</id>
 767                       <scientific_name>Mucoromycotina</scientific_name>
 768                       <synonym>Zygomycota</synonym>
 769                       <rank>subphylum</rank>
 770                     </taxonomy>
 771                     <clade>
 772                       <name>MUCCI</name>
 773                       <taxonomy>
 774                         <id provider="uniprot">36080</id>
 775                         <code>MUCCI</code>
 776                         <scientific_name>Mucor circinelloides</scientific_name>
 777                         <synonym>Mucor griseo-roseus</synonym>
 778                         <rank>species</rank>
 779                       </taxonomy>
 780                     </clade>
 781                     <clade>
 782                       <name>PHYBL</name>
 783                     </clade>
 784                     <clade>
 785                       <name>RHIOR</name>
 786                     </clade>
 787                   </clade>
 788                 </clade>
 789                 <clade>
 790                   <name>BATDE</name>
 791                 </clade>
 792               </clade>
 793               <clade>
 794                 <name>ENCCU</name>
 795               </clade>
 796             </clade>
 797           </clade>
 798           <clade>
 799             <name>Amoebozoa</name>
 800             <clade>
 801               <name>Dictyostelium</name>
 802               <clade>
 803                 <name>DICDI</name>
 804               </clade>
 805               <clade>
 806                 <name>DICPU</name>
 807               </clade>
 808             </clade>
 809             <clade>
 810               <name>ENTHI</name>
 811             </clade>
 812           </clade>
 813         </clade>
 814         <clade>
 815           <name>Bikonta</name>
 816           <reference doi="10.1099/ijs.0.63216-0">
 817           </reference>
 818           <clade>
 819             <name>Corticata</name>
 820             <clade>
 821               <name>Archaeplastida</name>
 822               <clade>
 823                 <name>Viridiplantae</name>
 824                 <clade>
 825                   <name>Embryophyta</name>
 826                   <clade>
 827                     <name>Tracheophyta</name>
 828                     <clade>
 829                       <name>Magnoliophyta</name>
 830                       <clade>
 831                         <name>core eudicotyledons</name>
 832                         <taxonomy>
 833                           <id provider="uniprot">91827</id>
 834                           <scientific_name>core eudicotyledons</scientific_name>
 835                           <synonym>core eudicots</synonym>
 836                           <uri>http://tolweb.org/Core_Eudicots/20714</uri>
 837                         </taxonomy>
 838                         <clade>
 839                           <name>Rosids_Vitaceae</name>
 840                           <clade>
 841                             <name>rosids</name>
 842                             <taxonomy>
 843                               <id provider="uniprot">71275</id>
 844                               <scientific_name>rosids</scientific_name>
 845                               <synonym>Rosidae</synonym>
 846                               <rank>subclass</rank>
 847                               <uri>http://tolweb.org/Rosids/20701</uri>
 848                             </taxonomy>
 849                             <clade>
 850                               <name>fabids</name>
 851                               <taxonomy>
 852                                 <id provider="uniprot">91835</id>
 853                                 <scientific_name>fabids</scientific_name>
 854                                 <synonym>eurosids I</synonym>
 855                                 <uri>http://tolweb.org/Rosids/20701</uri>
 856                               </taxonomy>
 857                               <clade>
 858                                 <name>Malpighiales</name>
 859                                 <taxonomy>
 860                                   <id provider="uniprot">3646</id>
 861                                   <scientific_name>Malpighiales</scientific_name>
 862                                   <synonym>Balanopales</synonym>
 863                                   <rank>order</rank>
 864                                 </taxonomy>
 865                                 <clade>
 866                                   <name>POPTR</name>
 867                                 </clade>
 868                                 <clade>
 869                                   <name>MANES</name>
 870                                   <taxonomy>
 871                                     <id provider="uniprot">3983</id>
 872                                     <code>MANES</code>
 873                                     <scientific_name>Manihot esculenta</scientific_name>
 874                                     <common_name>Tapioca</common_name>
 875                                     <rank>species</rank>
 876                                   </taxonomy>
 877                                 </clade>
 878                               </clade>
 879                               <clade>
 880                                 <name>Fabales_Cucurbitales</name>
 881                                 <clade>
 882                                   <name>SOYBN</name>
 883                                   <taxonomy>
 884                                     <id provider="uniprot">3847</id>
 885                                     <code>SOYBN</code>
 886                                     <scientific_name>Glycine max</scientific_name>
 887                                     <authority>cv. Wye</authority>
 888                                     <common_name>Soybean</common_name>
 889                                   </taxonomy>
 890                                 </clade>
 891                                 <clade>
 892                                   <name>CUCSA</name>
 893                                   <taxonomy>
 894                                     <id provider="uniprot">3659</id>
 895                                     <code>CUCSA</code>
 896                                     <scientific_name>Cucumis sativus</scientific_name>
 897                                     <common_name>Cucumber</common_name>
 898                                     <rank>species</rank>
 899                                   </taxonomy>
 900                                 </clade>
 901                               </clade>
 902                             </clade>
 903                             <clade>
 904                               <name>Arabidopsis</name>
 905                               <clade>
 906                                 <name>ARATH</name>
 907                               </clade>
 908                               <clade>
 909                                 <name>ARALY</name>
 910                               </clade>
 911                             </clade>
 912                           </clade>
 913                           <clade>
 914                             <name>VITVI</name>
 915                             <taxonomy>
 916                               <id provider="eol">582304</id>
 917                               <code>VITVI</code>
 918                               <scientific_name>Vitis vinifera</scientific_name>
 919                             </taxonomy>
 920                           </clade>
 921                         </clade>
 922                         <clade>
 923                           <name>MIMGU</name>
 924                           <taxonomy>
 925                             <id provider="uniprot">4155</id>
 926                             <code>MIMGU</code>
 927                             <scientific_name>Mimulus guttatus</scientific_name>
 928                             <common_name>Yellow monkey flower</common_name>
 929                             <rank>species</rank>
 930                           </taxonomy>
 931                         </clade>
 932                       </clade>
 933                       <clade>
 934                         <name>Poales</name>
 935                         <clade>
 936                           <name>Oryza</name>
 937                           <clade>
 938                             <name>ORYSJ</name>
 939                           </clade>
 940                           <clade>
 941                             <name>ORYSA</name>
 942                           </clade>
 943                         </clade>
 944                         <clade>
 945                           <name>SORBI</name>
 946                         </clade>
 947                       </clade>
 948                     </clade>
 949                     <clade>
 950                       <name>SELMO</name>
 951                     </clade>
 952                   </clade>
 953                   <clade>
 954                     <name>PHYPA</name>
 955                   </clade>
 956                 </clade>
 957                 <clade>
 958                   <name>Chlorophyta</name>
 959                   <clade>
 960                     <name>Prasinophyceae</name>
 961                     <clade>
 962                       <name>Ostreococcus</name>
 963                       <clade>
 964                         <name>OSTLU</name>
 965                       </clade>
 966                       <clade>
 967                         <name>OSTTA</name>
 968                       </clade>
 969                       <clade>
 970                         <name>OSTRC</name>
 971                       </clade>
 972                     </clade>
 973                     <clade>
 974                       <name>Micromonas</name>
 975                       <clade>
 976                         <name>MICPU</name>
 977                       </clade>
 978                       <clade>
 979                         <name>MIC99</name>
 980                       </clade>
 981                     </clade>
 982                   </clade>
 983                   <clade>
 984                     <name>Trebouxiophyceae_Chlorophyceae</name>
 985                     <clade>
 986                       <name>Chlorophyceae</name>
 987                       <clade>
 988                         <name>CHLRE</name>
 989                       </clade>
 990                       <clade>
 991                         <name>VOLCA</name>
 992                       </clade>
 993                     </clade>
 994                     <clade>
 995                       <name>CHLSP</name>
 996                       <taxonomy>
 997                         <id provider="uniprot">310507</id>
 998                         <code>CHLSP</code>
 999                         <scientific_name>Chlorella sp. NC64A</scientific_name>
1000                       </taxonomy>
1001                     </clade>
1002                   </clade>
1003                 </clade>
1004               </clade>
1005               <clade>
1006                 <name>CYAME</name>
1007                 <taxonomy>
1008                   <id provider="uniprot">45157</id>
1009                   <code>CYAME</code>
1010                   <scientific_name>Cyanidioschyzon merolae</scientific_name>
1011                   <common_name>Red alga</common_name>
1012                   <rank>species</rank>
1013                   <uri>http://merolae.biol.s.u-tokyo.ac.jp/</uri>
1014                 </taxonomy>
1015               </clade>
1016             </clade>
1017             <clade>
1018               <name>Chromalveolate</name>
1019               <reference doi="10.1073/pnas.0712248105">
1020               </reference>
1021               <clade>
1022                 <name>Heterokonta_Alveolata</name>
1023                 <clade>
1024                   <name>Alveolata</name>
1025                   <clade>
1026                     <name>Apicomplexa</name>
1027                     <clade>
1028                       <name>Aconoidasida</name>
1029                       <clade>
1030                         <name>Plasmodium</name>
1031                         <clade>
1032                           <name>PLAFA</name>
1033                         </clade>
1034                         <clade>
1035                           <name>PLAYO</name>
1036                         </clade>
1037                         <clade>
1038                           <name>PLACH</name>
1039                         </clade>
1040                       </clade>
1041                       <clade>
1042                         <name>Theileria</name>
1043                         <clade>
1044                           <name>THEPA</name>
1045                         </clade>
1046                         <clade>
1047                           <name>THEAN</name>
1048                         </clade>
1049                       </clade>
1050                     </clade>
1051                     <clade>
1052                       <name>Coccidia</name>
1053                       <clade>
1054                         <name>Cryptosporidium</name>
1055                         <clade>
1056                           <name>CRYHO</name>
1057                         </clade>
1058                         <clade>
1059                           <name>CRYPV</name>
1060                         </clade>
1061                       </clade>
1062                       <clade>
1063                         <name>TOXGO</name>
1064                       </clade>
1065                     </clade>
1066                   </clade>
1067                   <clade>
1068                     <name>Ciliophora</name>
1069                     <clade>
1070                       <name>TETTH</name>
1071                     </clade>
1072                     <clade>
1073                       <name>PARTE</name>
1074                     </clade>
1075                   </clade>
1076                 </clade>
1077                 <clade>
1078                   <name>Heterokonta</name>
1079                   <taxonomy>
1080                     <scientific_name>Heterokonta</scientific_name>
1081                     <common_name>Stramenophiles</common_name>
1082                   </taxonomy>
1083                   <clade>
1084                     <name>Pelagophyceae_Bacillariophyta</name>
1085                     <clade>
1086                       <name>Bacillariophyta</name>
1087                       <taxonomy>
1088                         <scientific_name>Bacillariophyta</scientific_name>
1089                         <common_name>Diatoms</common_name>
1090                         <rank>phylum</rank>
1091                       </taxonomy>
1092                       <clade>
1093                         <name>Bacillariophycidae</name>
1094                         <taxonomy>
1095                           <id provider="uniprot">33850</id>
1096                           <scientific_name>Bacillariophycidae</scientific_name>
1097                         </taxonomy>
1098                         <clade>
1099                           <name>PHATR</name>
1100                           <taxonomy>
1101                             <id provider="eol">912693</id>
1102                             <code>PHATR</code>
1103                             <scientific_name>Phaeodactylum tricornutum</scientific_name>
1104                             <authority>Bohlin</authority>
1105                             <rank>species</rank>
1106                           </taxonomy>
1107                         </clade>
1108                         <clade>
1109                           <name>FRACY</name>
1110                           <taxonomy>
1111                             <id provider="eol">911694</id>
1112                             <code>FRACY</code>
1113                             <scientific_name>Fragilariopsis cylindrus</scientific_name>
1114                             <authority>Krieger</authority>
1115                             <synonym>Nitzschia cylindrus</synonym>
1116                             <rank>species</rank>
1117                           </taxonomy>
1118                         </clade>
1119                       </clade>
1120                       <clade>
1121                         <name>THAPS</name>
1122                         <taxonomy>
1123                           <id provider="eol">916868</id>
1124                           <code>THAPS</code>
1125                           <scientific_name>Thalassiosira pseudonana</scientific_name>
1126                           <authority>Hasle &amp; Heimdal</authority>
1127                           <common_name>Marine diatom</common_name>
1128                           <rank>species</rank>
1129                         </taxonomy>
1130                       </clade>
1131                     </clade>
1132                     <clade>
1133                       <name>AURAN</name>
1134                       <taxonomy>
1135                         <id provider="eol">912461</id>
1136                         <code>AURAN</code>
1137                         <scientific_name>Aureococcus anophagefferens</scientific_name>
1138                         <authority>Hargraves &amp; Sieburth</authority>
1139                         <rank>species</rank>
1140                       </taxonomy>
1141                     </clade>
1142                   </clade>
1143                   <clade>
1144                     <name>Oomycetes</name>
1145                     <taxonomy>
1146                       <scientific_name>Oomycetes</scientific_name>
1147                       <common_name>water molds</common_name>
1148                     </taxonomy>
1149                     <clade>
1150                       <name>PHYIN</name>
1151                     </clade>
1152                     <clade>
1153                       <name>PHYRM</name>
1154                     </clade>
1155                     <clade>
1156                       <name>PHYSO</name>
1157                     </clade>
1158                   </clade>
1159                 </clade>
1160               </clade>
1161               <clade>
1162                 <name>EMIHU</name>
1163               </clade>
1164             </clade>
1165           </clade>
1166           <clade>
1167             <name>Excavata</name>
1168             <reference doi="10.1038/nature04546">
1169             </reference>
1170             <clade>
1171               <name>Kinetoplastida_Heterolobosea</name>
1172               <clade>
1173                 <name>Kinetoplastida</name>
1174                 <clade>
1175                   <name>LEIMA</name>
1176                 </clade>
1177                 <clade>
1178                   <name>TRYBB</name>
1179                 </clade>
1180               </clade>
1181               <clade>
1182                 <name>NAEGR</name>
1183               </clade>
1184             </clade>
1185             <clade>
1186               <name>Metamonada</name>
1187               <clade>
1188                 <name>GIALA</name>
1189               </clade>
1190               <clade>
1191                 <name>TRIVA</name>
1192               </clade>
1193             </clade>
1194           </clade>
1195         </clade>
1196       </clade>
1197       <clade>
1198         <name>Archaea</name>
1199         <clade>
1200           <name>a_62</name>
1201           <clade>
1202             <name>a_56</name>
1203             <clade>
1204               <name>a_52</name>
1205               <clade>
1206                 <name>a_44</name>
1207                 <clade>
1208                   <name>a_28</name>
1209                   <clade>
1210                     <name>a_26</name>
1211                     <clade>
1212                       <name>a_16</name>
1213                       <clade>
1214                         <name>a_14</name>
1215                         <clade>
1216                           <name>a_12</name>
1217                           <clade>
1218                             <name>a_6</name>
1219                             <clade>
1220                               <name>a_4</name>
1221                               <clade>
1222                                 <name>a_2</name>
1223                                 <clade>
1224                                   <name>METAC</name>
1225                                 </clade>
1226                                 <clade>
1227                                   <name>METBF</name>
1228                                 </clade>
1229                               </clade>
1230                               <clade>
1231                                 <name>METMA</name>
1232                               </clade>
1233                             </clade>
1234                             <clade>
1235                               <name>METBU</name>
1236                             </clade>
1237                           </clade>
1238                           <clade>
1239                             <name>a_11</name>
1240                             <clade>
1241                               <name>a_9</name>
1242                               <clade>
1243                                 <name>METHU</name>
1244                               </clade>
1245                               <clade>
1246                                 <name>METB6</name>
1247                               </clade>
1248                             </clade>
1249                             <clade>
1250                               <name>METMJ</name>
1251                             </clade>
1252                           </clade>
1253                         </clade>
1254                         <clade>
1255                           <name>METLZ</name>
1256                         </clade>
1257                       </clade>
1258                       <clade>
1259                         <name>METTP</name>
1260                       </clade>
1261                     </clade>
1262                     <clade>
1263                       <name>a_25</name>
1264                       <clade>
1265                         <name>a_23</name>
1266                         <clade>
1267                           <name>a_19</name>
1268                           <clade>
1269                             <name>NATPH</name>
1270                           </clade>
1271                           <clade>
1272                             <name>HALMA</name>
1273                           </clade>
1274                         </clade>
1275                         <clade>
1276                           <name>a_22</name>
1277                           <clade>
1278                             <name>HALSP</name>
1279                           </clade>
1280                           <clade>
1281                             <name>HALS3</name>
1282                           </clade>
1283                         </clade>
1284                       </clade>
1285                       <clade>
1286                         <name>HALWD</name>
1287                       </clade>
1288                     </clade>
1289                   </clade>
1290                   <clade>
1291                     <name>ARCFU</name>
1292                   </clade>
1293                 </clade>
1294                 <clade>
1295                   <name>a_43</name>
1296                   <clade>
1297                     <name>a_41</name>
1298                     <clade>
1299                       <name>a_35</name>
1300                       <clade>
1301                         <name>a_31</name>
1302                         <clade>
1303                           <name>METJA</name>
1304                         </clade>
1305                         <clade>
1306                           <name>META3</name>
1307                         </clade>
1308                       </clade>
1309                       <clade>
1310                         <name>a_34</name>
1311                         <clade>
1312                           <name>METMP</name>
1313                         </clade>
1314                         <clade>
1315                           <name>METVS</name>
1316                         </clade>
1317                       </clade>
1318                     </clade>
1319                     <clade>
1320                       <name>a_40</name>
1321                       <clade>
1322                         <name>a_38</name>
1323                         <clade>
1324                           <name>METST</name>
1325                         </clade>
1326                         <clade>
1327                           <name>METS3</name>
1328                         </clade>
1329                       </clade>
1330                       <clade>
1331                         <name>METTH</name>
1332                       </clade>
1333                     </clade>
1334                   </clade>
1335                   <clade>
1336                     <name>METKA</name>
1337                   </clade>
1338                 </clade>
1339               </clade>
1340               <clade>
1341                 <name>a_51</name>
1342                 <clade>
1343                   <name>a_47</name>
1344                   <clade>
1345                     <name>PYRFU</name>
1346                   </clade>
1347                   <clade>
1348                     <name>THEKO</name>
1349                   </clade>
1350                 </clade>
1351                 <clade>
1352                   <name>a_50</name>
1353                   <clade>
1354                     <name>PYRAB</name>
1355                   </clade>
1356                   <clade>
1357                     <name>PYRHO</name>
1358                   </clade>
1359                 </clade>
1360               </clade>
1361             </clade>
1362             <clade>
1363               <name>a_55</name>
1364               <clade>
1365                 <name>NITMA</name>
1366               </clade>
1367               <clade>
1368                 <name>NANEQ</name>
1369               </clade>
1370             </clade>
1371           </clade>
1372           <clade>
1373             <name>a_61</name>
1374             <clade>
1375               <name>a_59</name>
1376               <clade>
1377                 <name>THEVO</name>
1378               </clade>
1379               <clade>
1380                 <name>THEAC</name>
1381               </clade>
1382             </clade>
1383             <clade>
1384               <name>PICTO</name>
1385             </clade>
1386           </clade>
1387         </clade>
1388         <clade>
1389           <name>a_93</name>
1390           <clade>
1391             <name>a_91</name>
1392             <clade>
1393               <name>a_83</name>
1394               <clade>
1395                 <name>a_81</name>
1396                 <clade>
1397                   <name>a_73</name>
1398                   <clade>
1399                     <name>a_71</name>
1400                     <clade>
1401                       <name>a_67</name>
1402                       <clade>
1403                         <name>a_65</name>
1404                         <clade>
1405                           <name>PYRAR</name>
1406                         </clade>
1407                         <clade>
1408                           <name>PYRCJ</name>
1409                         </clade>
1410                       </clade>
1411                       <clade>
1412                         <name>PYRAE</name>
1413                       </clade>
1414                     </clade>
1415                     <clade>
1416                       <name>a_70</name>
1417                       <clade>
1418                         <name>PYRIL</name>
1419                       </clade>
1420                       <clade>
1421                         <name>THENV</name>
1422                       </clade>
1423                     </clade>
1424                   </clade>
1425                   <clade>
1426                     <name>CALMA</name>
1427                   </clade>
1428                 </clade>
1429                 <clade>
1430                   <name>a_80</name>
1431                   <clade>
1432                     <name>a_78</name>
1433                     <clade>
1434                       <name>a_76</name>
1435                       <clade>
1436                         <name>SULTO</name>
1437                       </clade>
1438                       <clade>
1439                         <name>SULAC</name>
1440                       </clade>
1441                     </clade>
1442                     <clade>
1443                       <name>SULSO</name>
1444                     </clade>
1445                   </clade>
1446                   <clade>
1447                     <name>METS5</name>
1448                   </clade>
1449                 </clade>
1450               </clade>
1451               <clade>
1452                 <name>AERPE</name>
1453               </clade>
1454             </clade>
1455             <clade>
1456               <name>a_90</name>
1457               <clade>
1458                 <name>a_88</name>
1459                 <clade>
1460                   <name>a_86</name>
1461                   <clade>
1462                     <name>STAMF</name>
1463                   </clade>
1464                   <clade>
1465                     <name>THEPD</name>
1466                   </clade>
1467                 </clade>
1468                 <clade>
1469                   <name>HYPBU</name>
1470                 </clade>
1471               </clade>
1472               <clade>
1473                 <name>IGNH4</name>
1474               </clade>
1475             </clade>
1476           </clade>
1477           <clade>
1478             <name>KORCR</name>
1479           </clade>
1480         </clade>
1481       </clade>
1482     </clade>
1483     <clade>
1484       <name>Bacteria</name>
1485       <clade>
1486         <name>b_278</name>
1487         <clade>
1488           <name>b_268</name>
1489           <clade>
1490             <name>b_226</name>
1491             <clade>
1492               <name>b_200</name>
1493               <clade>
1494                 <name>b_194</name>
1495                 <clade>
1496                   <name>b_104</name>
1497                   <clade>
1498                     <name>b_80</name>
1499                     <clade>
1500                       <name>b_72</name>
1501                       <clade>
1502                         <name>b_52</name>
1503                         <clade>
1504                           <name>b_44</name>
1505                           <clade>
1506                             <name>b_30</name>
1507                             <clade>
1508                               <name>b_24</name>
1509                               <clade>
1510                                 <name>b_16</name>
1511                                 <clade>
1512                                   <name>b_10</name>
1513                                   <clade>
1514                                     <name>b_8</name>
1515                                     <clade>
1516                                       <name>b_6</name>
1517                                       <clade>
1518                                         <name>b_4</name>
1519                                         <clade>
1520                                           <name>b_2</name>
1521                                           <clade>
1522                                             <name>ECOLI</name>
1523                                           </clade>
1524                                           <clade>
1525                                             <name>ECO57</name>
1526                                           </clade>
1527                                         </clade>
1528                                         <clade>
1529                                           <name>SHIFL</name>
1530                                         </clade>
1531                                       </clade>
1532                                       <clade>
1533                                         <name>SALTY</name>
1534                                       </clade>
1535                                     </clade>
1536                                     <clade>
1537                                       <name>YERPE</name>
1538                                     </clade>
1539                                   </clade>
1540                                   <clade>
1541                                     <name>PHOLU</name>
1542                                   </clade>
1543                                 </clade>
1544                                 <clade>
1545                                   <name>b_15</name>
1546                                   <clade>
1547                                     <name>b_13</name>
1548                                     <clade>
1549                                       <name>PHOPR</name>
1550                                     </clade>
1551                                     <clade>
1552                                       <name>VIBCH</name>
1553                                     </clade>
1554                                   </clade>
1555                                   <clade>
1556                                     <name>SHEDO</name>
1557                                   </clade>
1558                                 </clade>
1559                               </clade>
1560                               <clade>
1561                                 <name>b_23</name>
1562                                 <clade>
1563                                   <name>b_21</name>
1564                                   <clade>
1565                                     <name>b_19</name>
1566                                     <clade>
1567                                       <name>PSEF5</name>
1568                                     </clade>
1569                                     <clade>
1570                                       <name>PSEPF</name>
1571                                     </clade>
1572                                   </clade>
1573                                   <clade>
1574                                     <name>PSEAE</name>
1575                                   </clade>
1576                                 </clade>
1577                                 <clade>
1578                                   <name>CHRSD</name>
1579                                 </clade>
1580                               </clade>
1581                             </clade>
1582                             <clade>
1583                               <name>b_29</name>
1584                               <clade>
1585                                 <name>b_27</name>
1586                                 <clade>
1587                                   <name>RALME</name>
1588                                 </clade>
1589                                 <clade>
1590                                   <name>RHOFT</name>
1591                                 </clade>
1592                               </clade>
1593                               <clade>
1594                                 <name>DECAR</name>
1595                               </clade>
1596                             </clade>
1597                           </clade>
1598                           <clade>
1599                             <name>b_43</name>
1600                             <clade>
1601                               <name>b_41</name>
1602                               <clade>
1603                                 <name>b_35</name>
1604                                 <clade>
1605                                   <name>b_33</name>
1606                                   <clade>
1607                                     <name>NITMU</name>
1608                                   </clade>
1609                                   <clade>
1610                                     <name>NITEU</name>
1611                                   </clade>
1612                                 </clade>
1613                                 <clade>
1614                                   <name>THIDE</name>
1615                                 </clade>
1616                               </clade>
1617                               <clade>
1618                                 <name>b_40</name>
1619                                 <clade>
1620                                   <name>b_38</name>
1621                                   <clade>
1622                                     <name>ALHEH</name>
1623                                   </clade>
1624                                   <clade>
1625                                     <name>HALHL</name>
1626                                   </clade>
1627                                 </clade>
1628                                 <clade>
1629                                   <name>NITOC</name>
1630                                 </clade>
1631                               </clade>
1632                             </clade>
1633                             <clade>
1634                               <name>THICR</name>
1635                             </clade>
1636                           </clade>
1637                         </clade>
1638                         <clade>
1639                           <name>b_51</name>
1640                           <clade>
1641                             <name>b_47</name>
1642                             <clade>
1643                               <name>LEGPN</name>
1644                             </clade>
1645                             <clade>
1646                               <name>IDILO</name>
1647                             </clade>
1648                           </clade>
1649                           <clade>
1650                             <name>b_50</name>
1651                             <clade>
1652                               <name>XANAC</name>
1653                             </clade>
1654                             <clade>
1655                               <name>XYLFT</name>
1656                             </clade>
1657                           </clade>
1658                         </clade>
1659                       </clade>
1660                       <clade>
1661                         <name>b_71</name>
1662                         <clade>
1663                           <name>b_67</name>
1664                           <clade>
1665                             <name>b_65</name>
1666                             <clade>
1667                               <name>b_61</name>
1668                               <clade>
1669                                 <name>b_57</name>
1670                                 <clade>
1671                                   <name>b_55</name>
1672                                   <clade>
1673                                     <name>SINME</name>
1674                                   </clade>
1675                                   <clade>
1676                                     <name>RHIEC</name>
1677                                   </clade>
1678                                 </clade>
1679                                 <clade>
1680                                   <name>AGRT5</name>
1681                                 </clade>
1682                               </clade>
1683                               <clade>
1684                                 <name>b_60</name>
1685                                 <clade>
1686                                   <name>BRAJA</name>
1687                                 </clade>
1688                                 <clade>
1689                                   <name>RHOPT</name>
1690                                 </clade>
1691                               </clade>
1692                             </clade>
1693                             <clade>
1694                               <name>b_64</name>
1695                               <clade>
1696                                 <name>ROSDO</name>
1697                               </clade>
1698                               <clade>
1699                                 <name>RHOS1</name>
1700                               </clade>
1701                             </clade>
1702                           </clade>
1703                           <clade>
1704                             <name>CAUCR</name>
1705                           </clade>
1706                         </clade>
1707                         <clade>
1708                           <name>b_70</name>
1709                           <clade>
1710                             <name>RHORU</name>
1711                           </clade>
1712                           <clade>
1713                             <name>ACICY</name>
1714                           </clade>
1715                         </clade>
1716                       </clade>
1717                     </clade>
1718                     <clade>
1719                       <name>b_79</name>
1720                       <clade>
1721                         <name>b_77</name>
1722                         <clade>
1723                           <name>b_75</name>
1724                           <clade>
1725                             <name>PASMU</name>
1726                           </clade>
1727                           <clade>
1728                             <name>HAEIN</name>
1729                           </clade>
1730                         </clade>
1731                         <clade>
1732                           <name>NEIME</name>
1733                         </clade>
1734                       </clade>
1735                       <clade>
1736                         <name>ACIFE</name>
1737                       </clade>
1738                     </clade>
1739                   </clade>
1740                   <clade>
1741                     <name>b_103</name>
1742                     <clade>
1743                       <name>b_91</name>
1744                       <clade>
1745                         <name>b_87</name>
1746                         <clade>
1747                           <name>b_83</name>
1748                           <clade>
1749                             <name>DESDE</name>
1750                           </clade>
1751                           <clade>
1752                             <name>DESPS</name>
1753                           </clade>
1754                         </clade>
1755                         <clade>
1756                           <name>b_86</name>
1757                           <clade>
1758                             <name>SYNAS</name>
1759                           </clade>
1760                           <clade>
1761                             <name>DESOL</name>
1762                           </clade>
1763                         </clade>
1764                       </clade>
1765                       <clade>
1766                         <name>b_90</name>
1767                         <clade>
1768                           <name>GEOME</name>
1769                         </clade>
1770                         <clade>
1771                           <name>GEOSL</name>
1772                         </clade>
1773                       </clade>
1774                     </clade>
1775                     <clade>
1776                       <name>b_102</name>
1777                       <clade>
1778                         <name>b_98</name>
1779                         <clade>
1780                           <name>b_94</name>
1781                           <clade>
1782                             <name>ANADE</name>
1783                           </clade>
1784                           <clade>
1785                             <name>MYXXA</name>
1786                           </clade>
1787                         </clade>
1788                         <clade>
1789                           <name>b_97</name>
1790                           <clade>
1791                             <name>SOLUS</name>
1792                           </clade>
1793                           <clade>
1794                             <name>ACIBL</name>
1795                           </clade>
1796                         </clade>
1797                       </clade>
1798                       <clade>
1799                         <name>b_101</name>
1800                         <clade>
1801                           <name>RHOBA</name>
1802                         </clade>
1803                         <clade>
1804                           <name>OPITE</name>
1805                         </clade>
1806                       </clade>
1807                     </clade>
1808                   </clade>
1809                 </clade>
1810                 <clade>
1811                   <name>b_193</name>
1812                   <clade>
1813                     <name>b_163</name>
1814                     <clade>
1815                       <name>b_133</name>
1816                       <clade>
1817                         <name>b_127</name>
1818                         <clade>
1819                           <name>b_119</name>
1820                           <clade>
1821                             <name>b_115</name>
1822                             <clade>
1823                               <name>b_113</name>
1824                               <clade>
1825                                 <name>b_111</name>
1826                                 <clade>
1827                                   <name>b_109</name>
1828                                   <clade>
1829                                     <name>b_107</name>
1830                                     <clade>
1831                                       <name>MYCTU</name>
1832                                     </clade>
1833                                     <clade>
1834                                       <name>MYCLE</name>
1835                                     </clade>
1836                                   </clade>
1837                                   <clade>
1838                                     <name>RHOR1</name>
1839                                   </clade>
1840                                 </clade>
1841                                 <clade>
1842                                   <name>STRCO</name>
1843                                 </clade>
1844                               </clade>
1845                               <clade>
1846                                 <name>KINRD</name>
1847                               </clade>
1848                             </clade>
1849                             <clade>
1850                               <name>THEFY</name>
1851                             </clade>
1852                           </clade>
1853                           <clade>
1854                             <name>b_118</name>
1855                             <clade>
1856                               <name>CORJK</name>
1857                             </clade>
1858                             <clade>
1859                               <name>KOCRD</name>
1860                             </clade>
1861                           </clade>
1862                         </clade>
1863                         <clade>
1864                           <name>b_126</name>
1865                           <clade>
1866                             <name>b_124</name>
1867                             <clade>
1868                               <name>b_122</name>
1869                               <clade>
1870                                 <name>CHLAU</name>
1871                               </clade>
1872                               <clade>
1873                                 <name>ROSCA</name>
1874                               </clade>
1875                             </clade>
1876                             <clade>
1877                               <name>HERAU</name>
1878                             </clade>
1879                           </clade>
1880                           <clade>
1881                             <name>RUBXD</name>
1882                           </clade>
1883                         </clade>
1884                       </clade>
1885                       <clade>
1886                         <name>b_132</name>
1887                         <clade>
1888                           <name>b_130</name>
1889                           <clade>
1890                             <name>DEIRA</name>
1891                           </clade>
1892                           <clade>
1893                             <name>DEIGD</name>
1894                           </clade>
1895                         </clade>
1896                         <clade>
1897                           <name>THETH</name>
1898                         </clade>
1899                       </clade>
1900                     </clade>
1901                     <clade>
1902                       <name>b_162</name>
1903                       <clade>
1904                         <name>b_154</name>
1905                         <clade>
1906                           <name>b_152</name>
1907                           <clade>
1908                             <name>b_146</name>
1909                             <clade>
1910                               <name>b_144</name>
1911                               <clade>
1912                                 <name>b_142</name>
1913                                 <clade>
1914                                   <name>b_140</name>
1915                                   <clade>
1916                                     <name>b_138</name>
1917                                     <clade>
1918                                       <name>b_136</name>
1919                                       <clade>
1920                                         <name>NOSS7</name>
1921                                       </clade>
1922                                       <clade>
1923                                         <name>ANAVA</name>
1924                                       </clade>
1925                                     </clade>
1926                                     <clade>
1927                                       <name>NOSP7</name>
1928                                     </clade>
1929                                   </clade>
1930                                   <clade>
1931                                     <name>CYAA2</name>
1932                                   </clade>
1933                                 </clade>
1934                                 <clade>
1935                                   <name>ACAMR</name>
1936                                 </clade>
1937                               </clade>
1938                               <clade>
1939                                 <name>MICAN</name>
1940                               </clade>
1941                             </clade>
1942                             <clade>
1943                               <name>TRIER</name>
1944                             </clade>
1945                           </clade>
1946                           <clade>
1947                             <name>b_151</name>
1948                             <clade>
1949                               <name>b_149</name>
1950                               <clade>
1951                                 <name>SYNEL</name>
1952                               </clade>
1953                               <clade>
1954                                 <name>SYNY3</name>
1955                               </clade>
1956                             </clade>
1957                             <clade>
1958                               <name>THEEL</name>
1959                             </clade>
1960                           </clade>
1961                         </clade>
1962                         <clade>
1963                           <name>GLOVI</name>
1964                         </clade>
1965                       </clade>
1966                       <clade>
1967                         <name>b_161</name>
1968                         <clade>
1969                           <name>b_159</name>
1970                           <clade>
1971                             <name>b_157</name>
1972                             <clade>
1973                               <name>PROMA</name>
1974                             </clade>
1975                             <clade>
1976                               <name>PROMP</name>
1977                             </clade>
1978                           </clade>
1979                           <clade>
1980                             <name>PROMM</name>
1981                           </clade>
1982                         </clade>
1983                         <clade>
1984                           <name>SYNS3</name>
1985                         </clade>
1986                       </clade>
1987                     </clade>
1988                   </clade>
1989                   <clade>
1990                     <name>b_192</name>
1991                     <clade>
1992                       <name>b_190</name>
1993                       <clade>
1994                         <name>b_178</name>
1995                         <clade>
1996                           <name>b_176</name>
1997                           <clade>
1998                             <name>b_170</name>
1999                             <clade>
2000                               <name>b_166</name>
2001                               <clade>
2002                                 <name>CHLPB</name>
2003                               </clade>
2004                               <clade>
2005                                 <name>PROAE</name>
2006                               </clade>
2007                             </clade>
2008                             <clade>
2009                               <name>b_169</name>
2010                               <clade>
2011                                 <name>PROVI</name>
2012                               </clade>
2013                               <clade>
2014                                 <name>PELLU</name>
2015                               </clade>
2016                             </clade>
2017                           </clade>
2018                           <clade>
2019                             <name>b_175</name>
2020                             <clade>
2021                               <name>b_173</name>
2022                               <clade>
2023                                 <name>CHLTE</name>
2024                               </clade>
2025                               <clade>
2026                                 <name>CHLP8</name>
2027                               </clade>
2028                             </clade>
2029                             <clade>
2030                               <name>CHLCH</name>
2031                             </clade>
2032                           </clade>
2033                         </clade>
2034                         <clade>
2035                           <name>CHLTA</name>
2036                         </clade>
2037                       </clade>
2038                       <clade>
2039                         <name>b_189</name>
2040                         <clade>
2041                           <name>b_183</name>
2042                           <clade>
2043                             <name>b_181</name>
2044                             <clade>
2045                               <name>FLAJO</name>
2046                             </clade>
2047                             <clade>
2048                               <name>GRAFK</name>
2049                             </clade>
2050                           </clade>
2051                           <clade>
2052                             <name>CYTH3</name>
2053                           </clade>
2054                         </clade>
2055                         <clade>
2056                           <name>b_188</name>
2057                           <clade>
2058                             <name>b_186</name>
2059                             <clade>
2060                               <name>BACFR</name>
2061                             </clade>
2062                             <clade>
2063                               <name>BACTN</name>
2064                             </clade>
2065                           </clade>
2066                           <clade>
2067                             <name>PORGI</name>
2068                           </clade>
2069                         </clade>
2070                       </clade>
2071                     </clade>
2072                     <clade>
2073                       <name>SALRD</name>
2074                     </clade>
2075                   </clade>
2076                 </clade>
2077               </clade>
2078               <clade>
2079                 <name>b_199</name>
2080                 <clade>
2081                   <name>b_197</name>
2082                   <clade>
2083                     <name>METI4</name>
2084                   </clade>
2085                   <clade>
2086                     <name>AKKM8</name>
2087                   </clade>
2088                 </clade>
2089                 <clade>
2090                   <name>LEPIC</name>
2091                 </clade>
2092               </clade>
2093             </clade>
2094             <clade>
2095               <name>b_225</name>
2096               <clade>
2097                 <name>b_219</name>
2098                 <clade>
2099                   <name>b_213</name>
2100                   <clade>
2101                     <name>b_211</name>
2102                     <clade>
2103                       <name>b_207</name>
2104                       <clade>
2105                         <name>b_203</name>
2106                         <clade>
2107                           <name>BACSU</name>
2108                         </clade>
2109                         <clade>
2110                           <name>BACAN</name>
2111                         </clade>
2112                       </clade>
2113                       <clade>
2114                         <name>b_206</name>
2115                         <clade>
2116                           <name>GEOKA</name>
2117                         </clade>
2118                         <clade>
2119                           <name>BACHD</name>
2120                         </clade>
2121                       </clade>
2122                     </clade>
2123                     <clade>
2124                       <name>b_210</name>
2125                       <clade>
2126                         <name>LISMO</name>
2127                       </clade>
2128                       <clade>
2129                         <name>STAAU</name>
2130                       </clade>
2131                     </clade>
2132                   </clade>
2133                   <clade>
2134                     <name>CLOP1</name>
2135                   </clade>
2136                 </clade>
2137                 <clade>
2138                   <name>Clostridia</name>
2139                   <taxonomy>
2140                     <id provider="uniprot">186801</id>
2141                     <scientific_name>Clostridia</scientific_name>
2142                     <rank>class</rank>
2143                   </taxonomy>
2144                   <clade>
2145                     <name>b_218</name>
2146                     <clade>
2147                       <name>b_216</name>
2148                       <clade>
2149                         <name>CARHZ</name>
2150                       </clade>
2151                       <clade>
2152                         <name>THETN</name>
2153                       </clade>
2154                     </clade>
2155                     <clade>
2156                       <name>DESHA</name>
2157                     </clade>
2158                   </clade>
2159                   <clade>
2160                     <name>EUBR3</name>
2161                     <taxonomy>
2162                       <code>EUBR3</code>
2163                     </taxonomy>
2164                   </clade>
2165                 </clade>
2166               </clade>
2167               <clade>
2168                 <name>b_224</name>
2169                 <clade>
2170                   <name>b_222</name>
2171                   <clade>
2172                     <name>THELT</name>
2173                   </clade>
2174                   <clade>
2175                     <name>FERNB</name>
2176                   </clade>
2177                 </clade>
2178                 <clade>
2179                   <name>THEMA</name>
2180                 </clade>
2181               </clade>
2182             </clade>
2183           </clade>
2184           <clade>
2185             <name>b_267</name>
2186             <clade>
2187               <name>b_263</name>
2188               <clade>
2189                 <name>b_251</name>
2190                 <clade>
2191                   <name>b_249</name>
2192                   <clade>
2193                     <name>b_245</name>
2194                     <clade>
2195                       <name>b_237</name>
2196                       <clade>
2197                         <name>b_233</name>
2198                         <clade>
2199                           <name>b_231</name>
2200                           <clade>
2201                             <name>b_229</name>
2202                             <clade>
2203                               <name>MYCPN</name>
2204                             </clade>
2205                             <clade>
2206                               <name>MYCGE</name>
2207                             </clade>
2208                           </clade>
2209                           <clade>
2210                             <name>MESFL</name>
2211                           </clade>
2212                         </clade>
2213                         <clade>
2214                           <name>UREPA</name>
2215                         </clade>
2216                       </clade>
2217                       <clade>
2218                         <name>b_236</name>
2219                         <clade>
2220                           <name>BORBU</name>
2221                         </clade>
2222                         <clade>
2223                           <name>TREPA</name>
2224                         </clade>
2225                       </clade>
2226                     </clade>
2227                     <clade>
2228                       <name>b_244</name>
2229                       <clade>
2230                         <name>b_242</name>
2231                         <clade>
2232                           <name>b_240</name>
2233                           <clade>
2234                             <name>CHLPN</name>
2235                           </clade>
2236                           <clade>
2237                             <name>CHLFF</name>
2238                           </clade>
2239                         </clade>
2240                         <clade>
2241                           <name>CHLMU</name>
2242                         </clade>
2243                       </clade>
2244                       <clade>
2245                         <name>RICTY</name>
2246                       </clade>
2247                     </clade>
2248                   </clade>
2249                   <clade>
2250                     <name>b_248</name>
2251                     <clade>
2252                       <name>PELUB</name>
2253                     </clade>
2254                     <clade>
2255                       <name>BARHE</name>
2256                     </clade>
2257                   </clade>
2258                 </clade>
2259                 <clade>
2260                   <name>FRATU</name>
2261                 </clade>
2262               </clade>
2263               <clade>
2264                 <name>b_262</name>
2265                 <clade>
2266                   <name>b_260</name>
2267                   <clade>
2268                     <name>b_258</name>
2269                     <clade>
2270                       <name>b_256</name>
2271                       <clade>
2272                         <name>b_254</name>
2273                         <clade>
2274                           <name>STRPN</name>
2275                         </clade>
2276                         <clade>
2277                           <name>STRPY</name>
2278                         </clade>
2279                       </clade>
2280                       <clade>
2281                         <name>LACLA</name>
2282                       </clade>
2283                     </clade>
2284                     <clade>
2285                       <name>LACAC</name>
2286                     </clade>
2287                   </clade>
2288                   <clade>
2289                     <name>BIFLO</name>
2290                   </clade>
2291                 </clade>
2292                 <clade>
2293                   <name>FUSNU</name>
2294                 </clade>
2295               </clade>
2296             </clade>
2297             <clade>
2298               <name>b_266</name>
2299               <clade>
2300                 <name>DEHE1</name>
2301               </clade>
2302               <clade>
2303                 <name>DEHSB</name>
2304               </clade>
2305             </clade>
2306           </clade>
2307         </clade>
2308         <clade>
2309           <name>b_277</name>
2310           <clade>
2311             <name>b_273</name>
2312             <clade>
2313               <name>b_271</name>
2314               <clade>
2315                 <name>THIDN</name>
2316               </clade>
2317               <clade>
2318                 <name>NITSB</name>
2319               </clade>
2320             </clade>
2321             <clade>
2322               <name>SULNB</name>
2323             </clade>
2324           </clade>
2325           <clade>
2326             <name>b_276</name>
2327             <clade>
2328               <name>HELPH</name>
2329             </clade>
2330             <clade>
2331               <name>CAMJE</name>
2332             </clade>
2333           </clade>
2334         </clade>
2335       </clade>
2336       <clade>
2337         <name>b_283</name>
2338         <clade>
2339           <name>b_281</name>
2340           <clade>
2341             <name>AQUAE</name>
2342           </clade>
2343           <clade>
2344             <name>HYDY0</name>
2345           </clade>
2346         </clade>
2347         <clade>
2348           <name>SULYO</name>
2349         </clade>
2350       </clade>
2351     </clade>
2352   </clade>
2353 </phylogeny>
2354 </phyloxml>