forester/data/tol_117.xml

   1 <?xml version="1.0" encoding="UTF-8"?>
   2 <phyloxml xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.phyloxml.org http://www.phyloxml.org/1.10/phyloxml.xsd" xmlns="http://www.phyloxml.org">
   3 <phylogeny rooted="true" rerootable="false">
   4   <clade>
   5     <name>cellular_organisms</name>
   6     <clade>
   7       <name>Neomura</name>
   8       <clade>
   9         <taxonomy>
  10           <id provider="uniprot">2759</id>
  11           <scientific_name>Eukaryota</scientific_name>
  12           <rank>superkingdom</rank>
  13         </taxonomy>
  14         <clade>
  15           <name>Unikonta</name>
  16           <clade>
  17             <name>Opisthokonta &amp; Apusozoa</name>
  18             <clade>
  19               <taxonomy>
  20                 <scientific_name>Opisthokonta</scientific_name>
  21                 <common_name>Fungi/Metazoa group</common_name>
  22               </taxonomy>
  23               <clade>
  24                 <taxonomy>
  25                   <scientific_name>Holozoa</scientific_name>
  26                 </taxonomy>
  27                 <clade>
  28                   <name>Choanoflagellatea &amp; Metazoa</name>
  29                   <clade>
  30                     <name>Metazoa</name>
  31                     <taxonomy>
  32                       <id provider="uniprot">33208</id>
  33                       <scientific_name>Metazoa</scientific_name>
  34                       <rank>kingdom</rank>
  35                     </taxonomy>
  36                     <clade>
  37                       <name>Eumetazoa</name>
  38                       <reference doi="10.1038/nature06614">
  39                       </reference>
  40                       <clade>
  41                         <name>Bilateria_Cnidaria</name>
  42                         <clade>
  43                           <name>Bilateria</name>
  44                           <clade>
  45                             <name>Deuterostomia</name>
  46                             <reference doi="10.1038/nature04336">
  47                             </reference>
  48                             <clade>
  49                               <name>Chordata</name>
  50                               <taxonomy>
  51                                 <id provider="uniprot">7711</id>
  52                                 <scientific_name>Chordata</scientific_name>
  53                                 <rank>phylum</rank>
  54                               </taxonomy>
  55                               <clade>
  56                                 <name>Urochordata &amp; Vertebrata</name>
  57                                 <clade>
  58                                   <taxonomy>
  59                                     <id provider="uniprot">117571</id>
  60                                     <scientific_name>Euteleostomi</scientific_name>
  61                                   </taxonomy>
  62                                   <clade>
  63                                     <name>Tetrapoda</name>
  64                                     <clade>
  65                                       <name>Amniota</name>
  66                                       <clade>
  67                                         <taxonomy>
  68                                           <id provider="uniprot">40674</id>
  69                                           <scientific_name>Mammalia</scientific_name>
  70                                           <rank>class</rank>
  71                                         </taxonomy>
  72                                         <clade>
  73                                           <name>Theria</name>
  74                                           <clade>
  75                                             <taxonomy>
  76                                               <id provider="uniprot">9347</id>
  77                                               <scientific_name>Eutheria</scientific_name>
  78                                             </taxonomy>
  79                                             <clade>
  80                                               <taxonomy>
  81                                                 <id provider="uniprot">314146</id>
  82                                                 <scientific_name>Euarchontoglires</scientific_name>
  83                                                 <rank>superorder</rank>
  84                                               </taxonomy>
  85                                               <clade>
  86                                                 <taxonomy>
  87                                                   <id provider="uniprot">314147</id>
  88                                                   <scientific_name>Glires</scientific_name>
  89                                                   <common_name>Rodents and rabbits</common_name>
  90                                                 </taxonomy>
  91                                                 <clade>
  92                                                   <taxonomy>
  93                                                     <id provider="uniprot">9989</id>
  94                                                     <scientific_name>Rodentia</scientific_name>
  95                                                     <rank>order</rank>
  96                                                   </taxonomy>
  97                                                   <clade>
  98                                                     <taxonomy>
  99                                                       <id provider="uniprot">39107</id>
 100                                                       <scientific_name>Murinae</scientific_name>
 101                                                       <rank>subfamily</rank>
 102                                                     </taxonomy>
 103                                                     <clade>
 104                                                       <name>MOUSE</name>
 105                                                       <taxonomy>
 106                                                         <id provider="uniprot">10090</id>
 107                                                         <code>MOUSE</code>
 108                                                         <scientific_name>Mus musculus</scientific_name>
 109                                                         <common_name>Mouse</common_name>
 110                                                         <rank>species</rank>
 111                                                       </taxonomy>
 112                                                     </clade>
 113                                                     <clade>
 114                                                       <name>RAT</name>
 115                                                       <taxonomy>
 116                                                         <id provider="uniprot">10116</id>
 117                                                         <code>RAT</code>
 118                                                         <scientific_name>Rattus norvegicus</scientific_name>
 119                                                         <common_name>Rat</common_name>
 120                                                         <rank>species</rank>
 121                                                       </taxonomy>
 122                                                     </clade>
 123                                                   </clade>
 124                                                   <clade>
 125                                                     <name>CAVPO</name>
 126                                                     <taxonomy>
 127                                                       <id provider="uniprot">10141</id>
 128                                                       <code>CAVPO</code>
 129                                                       <scientific_name>Cavia porcellus</scientific_name>
 130                                                       <common_name>Guinea pig</common_name>
 131                                                       <rank>species</rank>
 132                                                     </taxonomy>
 133                                                   </clade>
 134                                                 </clade>
 135                                                 <clade>
 136                                                   <name>RABIT</name>
 137                                                   <taxonomy>
 138                                                     <id provider="uniprot">9986</id>
 139                                                     <code>RABIT</code>
 140                                                     <scientific_name>Oryctolagus cuniculus</scientific_name>
 141                                                     <common_name>Rabbit</common_name>
 142                                                     <rank>species</rank>
 143                                                   </taxonomy>
 144                                                 </clade>
 145                                               </clade>
 146                                               <clade>
 147                                                 <name>Primates</name>
 148                                                 <taxonomy>
 149                                                   <id provider="uniprot">9604</id>
 150                                                   <scientific_name>Hominidae</scientific_name>
 151                                                   <rank>family</rank>
 152                                                 </taxonomy>
 153                                                 <clade>
 154                                                   <name>HUMAN</name>
 155                                                   <taxonomy>
 156                                                     <id provider="uniprot">9606</id>
 157                                                     <code>HUMAN</code>
 158                                                     <scientific_name>Homo sapiens</scientific_name>
 159                                                     <common_name>Human</common_name>
 160                                                     <rank>species</rank>
 161                                                   </taxonomy>
 162                                                 </clade>
 163                                                 <clade>
 164                                                   <name>PANTR</name>
 165                                                   <taxonomy>
 166                                                     <id provider="uniprot">9598</id>
 167                                                     <code>PANTR</code>
 168                                                     <scientific_name>Pan troglodytes</scientific_name>
 169                                                     <common_name>Chimpanzee</common_name>
 170                                                     <rank>species</rank>
 171                                                   </taxonomy>
 172                                                 </clade>
 173                                               </clade>
 174                                             </clade>
 175                                             <clade>
 176                                               <name>Laurasiatheria</name>
 177                                               <taxonomy>
 178                                                 <id provider="uniprot">314145</id>
 179                                                 <scientific_name>Laurasiatheria</scientific_name>
 180                                                 <rank>superorder</rank>
 181                                               </taxonomy>
 182                                               <clade>
 183                                                 <name>Carnivora</name>
 184                                                 <taxonomy>
 185                                                   <id provider="uniprot">33554</id>
 186                                                   <scientific_name>Carnivora</scientific_name>
 187                                                   <rank>order</rank>
 188                                                 </taxonomy>
 189                                                 <clade>
 190                                                   <name>CANFA</name>
 191                                                   <taxonomy>
 192                                                     <id provider="uniprot">9615</id>
 193                                                     <code>CANFA</code>
 194                                                     <scientific_name>Canis familiaris</scientific_name>
 195                                                     <common_name>Dog</common_name>
 196                                                     <synonym>Canis lupus familiaris</synonym>
 197                                                     <rank>subspecies</rank>
 198                                                   </taxonomy>
 199                                                 </clade>
 200                                                 <clade>
 201                                                   <name>FELCA</name>
 202                                                   <taxonomy>
 203                                                     <id provider="uniprot">9685</id>
 204                                                     <code>FELCA</code>
 205                                                     <scientific_name>Felis catus</scientific_name>
 206                                                     <common_name>Cat</common_name>
 207                                                     <synonym>Felis silvestris catus</synonym>
 208                                                     <rank>species</rank>
 209                                                   </taxonomy>
 210                                                 </clade>
 211                                               </clade>
 212                                               <clade>
 213                                                 <name>BOVIN</name>
 214                                                 <taxonomy>
 215                                                   <id provider="uniprot">9913</id>
 216                                                   <code>BOVIN</code>
 217                                                   <scientific_name>Bos taurus</scientific_name>
 218                                                   <common_name>Bovine</common_name>
 219                                                   <synonym>Bos bovis</synonym>
 220                                                   <rank>species</rank>
 221                                                 </taxonomy>
 222                                               </clade>
 223                                             </clade>
 224                                           </clade>
 225                                           <clade>
 226                                             <name>MONDO</name>
 227                                             <taxonomy>
 228                                               <id provider="uniprot">13616</id>
 229                                               <code>MONDO</code>
 230                                               <scientific_name>Monodelphis domestica</scientific_name>
 231                                               <common_name>Short-tailed gray opossum</common_name>
 232                                               <rank>species</rank>
 233                                             </taxonomy>
 234                                           </clade>
 235                                         </clade>
 236                                         <clade>
 237                                           <name>ORNAN</name>
 238                                           <taxonomy>
 239                                             <id provider="uniprot">9258</id>
 240                                             <code>ORNAN</code>
 241                                             <scientific_name>Ornithorhynchus anatinus</scientific_name>
 242                                             <common_name>Duckbill platypus</common_name>
 243                                             <rank>species</rank>
 244                                           </taxonomy>
 245                                         </clade>
 246                                       </clade>
 247                                       <clade>
 248                                         <name>Diapsida</name>
 249                                         <clade>
 250                                           <name>Neognathae</name>
 251                                           <taxonomy>
 252                                             <id provider="uniprot">8825</id>
 253                                             <scientific_name>Neognathae</scientific_name>
 254                                             <rank>superorder</rank>
 255                                           </taxonomy>
 256                                           <clade>
 257                                             <name>CHICK</name>
 258                                             <taxonomy>
 259                                               <id provider="eol">10199408</id>
 260                                               <code>CHICK</code>
 261                                               <scientific_name>Gallus gallus</scientific_name>
 262                                               <common_name>Chicken</common_name>
 263                                               <synonym>Gallus domesticus</synonym>
 264                                               <rank>species</rank>
 265                                             </taxonomy>
 266                                           </clade>
 267                                           <clade>
 268                                             <name>TAEGU</name>
 269                                             <taxonomy>
 270                                               <id provider="uniprot">59729</id>
 271                                               <code>TAEGU</code>
 272                                               <scientific_name>Taeniopygia guttata</scientific_name>
 273                                               <common_name>Zebra finch</common_name>
 274                                               <synonym>Poephila guttata</synonym>
 275                                               <rank>species</rank>
 276                                             </taxonomy>
 277                                           </clade>
 278                                         </clade>
 279                                         <clade>
 280                                           <name>ANOCA</name>
 281                                           <taxonomy>
 282                                             <id provider="eol">795869</id>
 283                                             <code>ANOCA</code>
 284                                             <scientific_name>Anolis carolinensis</scientific_name>
 285                                             <authority>Voigt, 1832</authority>
 286                                             <common_name>Green anole</common_name>
 287                                             <synonym>American chameleon</synonym>
 288                                             <rank>species</rank>
 289                                           </taxonomy>
 290                                         </clade>
 291                                       </clade>
 292                                     </clade>
 293                                     <clade>
 294                                       <name>XENTR</name>
 295                                       <taxonomy>
 296                                         <id provider="uniprot">8364</id>
 297                                         <code>XENTR</code>
 298                                         <scientific_name>Xenopus tropicalis</scientific_name>
 299                                         <common_name>Western clawed frog</common_name>
 300                                         <synonym>Silurana tropicalis</synonym>
 301                                         <rank>species</rank>
 302                                       </taxonomy>
 303                                     </clade>
 304                                   </clade>
 305                                   <clade>
 306                                     <name>Teleostei</name>
 307                                     <taxonomy>
 308                                       <id provider="uniprot">32443</id>
 309                                       <scientific_name>Teleostei</scientific_name>
 310                                     </taxonomy>
 311                                     <clade>
 312                                       <taxonomy>
 313                                         <id provider="uniprot">32485</id>
 314                                         <scientific_name>Percomorpha</scientific_name>
 315                                       </taxonomy>
 316                                       <clade>
 317                                         <name>Smegmamorpha</name>
 318                                         <clade>
 319                                           <name>GASAC</name>
 320                                           <taxonomy>
 321                                             <id provider="uniprot">69293</id>
 322                                             <code>GASAC</code>
 323                                             <scientific_name>Gasterosteus aculeatus</scientific_name>
 324                                             <common_name>Three-spined stickleback</common_name>
 325                                             <rank>species</rank>
 326                                           </taxonomy>
 327                                         </clade>
 328                                         <clade>
 329                                           <name>ORYLA</name>
 330                                           <taxonomy>
 331                                             <id provider="uniprot">8090</id>
 332                                             <code>ORYLA</code>
 333                                             <scientific_name>Oryzias latipes</scientific_name>
 334                                             <common_name>Medaka fish</common_name>
 335                                             <synonym>Japanese ricefish</synonym>
 336                                             <rank>species</rank>
 337                                           </taxonomy>
 338                                         </clade>
 339                                       </clade>
 340                                       <clade>
 341                                         <taxonomy>
 342                                           <id provider="uniprot">31031</id>
 343                                           <scientific_name>Tetraodontidae</scientific_name>
 344                                           <common_name>puffers</common_name>
 345                                           <rank>family</rank>
 346                                         </taxonomy>
 347                                         <clade>
 348                                           <name>FUGRU</name>
 349                                           <taxonomy>
 350                                             <id provider="uniprot">31033</id>
 351                                             <code>FUGRU</code>
 352                                             <scientific_name>Takifugu rubripes</scientific_name>
 353                                             <common_name>Japanese pufferfish</common_name>
 354                                             <synonym>Fugu rubripes</synonym>
 355                                             <rank>species</rank>
 356                                           </taxonomy>
 357                                         </clade>
 358                                         <clade>
 359                                           <name>TETNG</name>
 360                                           <taxonomy>
 361                                             <id provider="uniprot">99883</id>
 362                                             <code>TETNG</code>
 363                                             <scientific_name>Tetraodon nigroviridis</scientific_name>
 364                                             <common_name>Green puffer</common_name>
 365                                             <rank>species</rank>
 366                                           </taxonomy>
 367                                         </clade>
 368                                       </clade>
 369                                     </clade>
 370                                     <clade>
 371                                       <name>DANRE</name>
 372                                       <taxonomy>
 373                                         <id provider="uniprot">7955</id>
 374                                         <code>DANRE</code>
 375                                         <scientific_name>Danio rerio</scientific_name>
 376                                         <common_name>Zebrafish</common_name>
 377                                         <synonym>Brachydanio rerio</synonym>
 378                                         <rank>species</rank>
 379                                       </taxonomy>
 380                                     </clade>
 381                                   </clade>
 382                                 </clade>
 383                                 <clade>
 384                                   <name>Urochordata</name>
 385                                   <taxonomy>
 386                                     <id provider="uniprot">7712</id>
 387                                     <scientific_name>Urochordata</scientific_name>
 388                                     <rank>subphylum</rank>
 389                                   </taxonomy>
 390                                   <clade>
 391                                     <taxonomy>
 392                                       <id provider="uniprot">7718</id>
 393                                       <scientific_name>Ciona</scientific_name>
 394                                       <rank>genus</rank>
 395                                     </taxonomy>
 396                                     <clade>
 397                                       <name>CIOIN</name>
 398                                       <taxonomy>
 399                                         <id provider="uniprot">7719</id>
 400                                         <code>CIOIN</code>
 401                                         <scientific_name>Ciona intestinalis</scientific_name>
 402                                         <common_name>Transparent sea squirt</common_name>
 403                                         <synonym>Ascidia intestinalis</synonym>
 404                                         <rank>species</rank>
 405                                       </taxonomy>
 406                                     </clade>
 407                                     <clade>
 408                                       <name>CIOSA</name>
 409                                       <taxonomy>
 410                                         <id provider="uniprot">51511</id>
 411                                         <code>CIOSA</code>
 412                                         <scientific_name>Ciona savignyi</scientific_name>
 413                                         <common_name>Pacific transparent sea squirt</common_name>
 414                                         <rank>species</rank>
 415                                       </taxonomy>
 416                                     </clade>
 417                                   </clade>
 418                                   <clade>
 419                                     <name>OIKDI</name>
 420                                     <taxonomy>
 421                                       <id provider="ncbi">34765</id>
 422                                       <code>OIKDI</code>
 423                                       <scientific_name>Oikopleura dioica</scientific_name>
 424                                       <common_name>Tunicate</common_name>
 425                                       <rank>species</rank>
 426                                     </taxonomy>
 427                                   </clade>
 428                                 </clade>
 429                               </clade>
 430                               <clade>
 431                                 <name>BRAFL</name>
 432                                 <taxonomy>
 433                                   <id provider="uniprot">7739</id>
 434                                   <code>BRAFL</code>
 435                                   <scientific_name>Branchiostoma floridae</scientific_name>
 436                                   <common_name>Florida lancelet</common_name>
 437                                   <synonym>Amphioxus</synonym>
 438                                   <rank>species</rank>
 439                                 </taxonomy>
 440                               </clade>
 441                             </clade>
 442                             <clade>
 443                               <name>Hemichordata &amp; Echinodermata</name>
 444                               <clade>
 445                                 <name>STRPU</name>
 446                                 <taxonomy>
 447                                   <id provider="uniprot">7668</id>
 448                                   <code>STRPU</code>
 449                                   <scientific_name>Strongylocentrotus purpuratus</scientific_name>
 450                                   <common_name>Purple sea urchin</common_name>
 451                                   <rank>species</rank>
 452                                 </taxonomy>
 453                               </clade>
 454                               <clade>
 455                                 <name>SACKO</name>
 456                                 <taxonomy>
 457                                   <id provider="uniprot">10224</id>
 458                                   <code>SACKO</code>
 459                                   <scientific_name>Saccoglossus kowalevskii</scientific_name>
 460                                   <authority>Agassiz, 1873</authority>
 461                                   <common_name>Acorn worm</common_name>
 462                                   <rank>species</rank>
 463                                 </taxonomy>
 464                               </clade>
 465                             </clade>
 466                           </clade>
 467                           <clade>
 468                             <name>Protostomia</name>
 469                             <clade>
 470                               <name>Ecdysozoa</name>
 471                               <clade>
 472                                 <taxonomy>
 473                                   <id provider="uniprot">6656</id>
 474                                   <scientific_name>Arthropoda</scientific_name>
 475                                   <rank>phylum</rank>
 476                                 </taxonomy>
 477                                 <clade>
 478                                   <name>Pancrustacea</name>
 479                                   <clade>
 480                                     <taxonomy>
 481                                       <id provider="uniprot">33340</id>
 482                                       <scientific_name>Neoptera</scientific_name>
 483                                       <rank>subclass</rank>
 484                                     </taxonomy>
 485                                     <clade>
 486                                       <name>Endopterygota &amp; Aphidiformes</name>
 487                                       <clade>
 488                                         <taxonomy>
 489                                           <id provider="uniprot">33392</id>
 490                                           <scientific_name>Endopterygota</scientific_name>
 491                                           <rank>infraclass</rank>
 492                                         </taxonomy>
 493                                         <clade>
 494                                           <name>Lepidoptera_Diptera</name>
 495                                           <clade>
 496                                             <taxonomy>
 497                                               <id provider="uniprot">7147</id>
 498                                               <scientific_name>Diptera</scientific_name>
 499                                               <rank>order</rank>
 500                                             </taxonomy>
 501                                             <clade>
 502                                               <taxonomy>
 503                                                 <id provider="uniprot">7157</id>
 504                                                 <scientific_name>Culicidae</scientific_name>
 505                                                 <common_name>mosquitos</common_name>
 506                                                 <rank>family</rank>
 507                                               </taxonomy>
 508                                               <clade>
 509                                                 <name>AEDAE</name>
 510                                                 <taxonomy>
 511                                                   <id provider="uniprot">7159</id>
 512                                                   <code>AEDAE</code>
 513                                                   <scientific_name>Aedes aegypti</scientific_name>
 514                                                   <common_name>Yellowfever mosquito</common_name>
 515                                                   <synonym>Culex aegypti</synonym>
 516                                                   <rank>species</rank>
 517                                                 </taxonomy>
 518                                               </clade>
 519                                               <clade>
 520                                                 <name>ANOGA</name>
 521                                                 <taxonomy>
 522                                                   <id provider="uniprot">7165</id>
 523                                                   <code>ANOGA</code>
 524                                                   <scientific_name>Anopheles gambiae</scientific_name>
 525                                                   <common_name>African malaria mosquito</common_name>
 526                                                   <rank>species</rank>
 527                                                 </taxonomy>
 528                                               </clade>
 529                                               <clade>
 530                                                 <name>CULPI</name>
 531                                                 <taxonomy>
 532                                                   <id provider="uniprot">7175</id>
 533                                                   <code>CULPI</code>
 534                                                   <scientific_name>Culex pipiens</scientific_name>
 535                                                   <common_name>House mosquito</common_name>
 536                                                   <rank>species</rank>
 537                                                 </taxonomy>
 538                                               </clade>
 539                                             </clade>
 540                                             <clade>
 541                                               <taxonomy>
 542                                                 <id provider="uniprot">32341</id>
 543                                                 <scientific_name>Sophophora</scientific_name>
 544                                                 <rank>subgenus</rank>
 545                                               </taxonomy>
 546                                               <clade>
 547                                                 <name>DROME</name>
 548                                                 <taxonomy>
 549                                                   <id provider="uniprot">7227</id>
 550                                                   <code>DROME</code>
 551                                                   <scientific_name>Drosophila melanogaster</scientific_name>
 552                                                   <common_name>Fruit fly</common_name>
 553                                                   <rank>species</rank>
 554                                                 </taxonomy>
 555                                               </clade>
 556                                               <clade>
 557                                                 <name>DROPS</name>
 558                                                 <taxonomy>
 559                                                   <id provider="uniprot">46245</id>
 560                                                   <code>DROPS</code>
 561                                                   <scientific_name>Drosophila pseudoobscura pseudoobscura</scientific_name>
 562                                                   <common_name>Fruit fly</common_name>
 563                                                   <rank>subspecies</rank>
 564                                                 </taxonomy>
 565                                               </clade>
 566                                             </clade>
 567                                           </clade>
 568                                           <clade>
 569                                             <name>BOMMO</name>
 570                                             <taxonomy>
 571                                               <id provider="uniprot">7091</id>
 572                                               <code>BOMMO</code>
 573                                               <scientific_name>Bombyx mori</scientific_name>
 574                                               <common_name>Silk moth</common_name>
 575                                               <rank>species</rank>
 576                                             </taxonomy>
 577                                           </clade>
 578                                         </clade>
 579                                         <clade>
 580                                           <taxonomy>
 581                                             <id provider="uniprot">7400</id>
 582                                             <scientific_name>Apocrita</scientific_name>
 583                                             <common_name>wasps, ants and bees</common_name>
 584                                           </taxonomy>
 585                                           <clade>
 586                                             <name>APIME</name>
 587                                             <taxonomy>
 588                                               <id provider="uniprot">7460</id>
 589                                               <code>APIME</code>
 590                                               <scientific_name>Apis mellifera</scientific_name>
 591                                               <common_name>Honeybee</common_name>
 592                                               <rank>species</rank>
 593                                             </taxonomy>
 594                                           </clade>
 595                                           <clade>
 596                                             <name>NASVI</name>
 597                                             <taxonomy>
 598                                               <id provider="uniprot">7425</id>
 599                                               <code>NASVI</code>
 600                                               <scientific_name>Nasonia vitripennis</scientific_name>
 601                                               <common_name>Parasitic wasp</common_name>
 602                                               <rank>species</rank>
 603                                             </taxonomy>
 604                                           </clade>
 605                                         </clade>
 606                                       </clade>
 607                                       <clade>
 608                                         <name>ACYPI</name>
 609                                         <taxonomy>
 610                                           <id provider="uniprot">7029</id>
 611                                           <code>ACYPI</code>
 612                                           <scientific_name>Acyrthosiphon pisum</scientific_name>
 613                                           <common_name>Pea aphid</common_name>
 614                                           <synonym>Acyrhosiphum pisum</synonym>
 615                                           <rank>species</rank>
 616                                         </taxonomy>
 617                                       </clade>
 618                                     </clade>
 619                                     <clade>
 620                                       <name>TRICA</name>
 621                                       <taxonomy>
 622                                         <id provider="uniprot">7070</id>
 623                                         <code>TRICA</code>
 624                                         <scientific_name>Tribolium castaneum</scientific_name>
 625                                         <common_name>Red flour beetle</common_name>
 626                                         <rank>species</rank>
 627                                       </taxonomy>
 628                                     </clade>
 629                                   </clade>
 630                                   <clade>
 631                                     <name>DAPPU</name>
 632                                     <taxonomy>
 633                                       <id provider="uniprot">6669</id>
 634                                       <code>DAPPU</code>
 635                                       <scientific_name>Daphnia pulex</scientific_name>
 636                                       <common_name>Water flea</common_name>
 637                                       <rank>species</rank>
 638                                     </taxonomy>
 639                                   </clade>
 640                                 </clade>
 641                                 <clade>
 642                                   <name>IXOSC</name>
 643                                   <taxonomy>
 644                                     <id provider="uniprot">6945</id>
 645                                     <code>IXOSC</code>
 646                                     <scientific_name>Ixodes scapularis</scientific_name>
 647                                     <common_name>Black-legged tick</common_name>
 648                                     <synonym>Deer tick</synonym>
 649                                     <rank>species</rank>
 650                                   </taxonomy>
 651                                 </clade>
 652                               </clade>
 653                               <clade>
 654                                 <taxonomy>
 655                                   <id provider="uniprot">119089</id>
 656                                   <scientific_name>Chromadorea</scientific_name>
 657                                   <rank>class</rank>
 658                                 </taxonomy>
 659                                 <reference doi="10.1038/32160">
 660                                 </reference>
 661                                 <clade>
 662                                   <name>nematode Clade V</name>
 663                                   <clade>
 664                                     <name>Caenorhabditis</name>
 665                                     <taxonomy>
 666                                       <id provider="uniprot">6237</id>
 667                                       <scientific_name>Caenorhabditis</scientific_name>
 668                                       <rank>genus</rank>
 669                                     </taxonomy>
 670                                     <clade>
 671                                       <name>CAEEL</name>
 672                                       <taxonomy>
 673                                         <id provider="uniprot">6239</id>
 674                                         <code>CAEEL</code>
 675                                         <scientific_name>Caenorhabditis elegans</scientific_name>
 676                                         <rank>species</rank>
 677                                       </taxonomy>
 678                                     </clade>
 679                                     <clade>
 680                                       <name>CAEBR</name>
 681                                       <taxonomy>
 682                                         <id provider="uniprot">6238</id>
 683                                         <code>CAEBR</code>
 684                                         <scientific_name>Caenorhabditis briggsae</scientific_name>
 685                                         <rank>species</rank>
 686                                       </taxonomy>
 687                                     </clade>
 688                                   </clade>
 689                                   <clade>
 690                                     <name>PRIPA</name>
 691                                     <taxonomy>
 692                                       <id provider="uniprot">54126</id>
 693                                       <code>PRIPA</code>
 694                                       <scientific_name>Pristionchus pacificus</scientific_name>
 695                                       <rank>species</rank>
 696                                     </taxonomy>
 697                                   </clade>
 698                                 </clade>
 699                                 <clade>
 700                                   <name>BRUMA</name>
 701                                   <taxonomy>
 702                                     <id provider="uniprot">6279</id>
 703                                     <code>BRUMA</code>
 704                                     <scientific_name>Brugia malayi</scientific_name>
 705                                     <common_name>Filarial nematode worm</common_name>
 706                                     <rank>species</rank>
 707                                   </taxonomy>
 708                                 </clade>
 709                               </clade>
 710                             </clade>
 711                             <clade>
 712                               <name>Lophotrochozoa</name>
 713                               <clade>
 714                                 <name>Annelida &amp; Mollusca</name>
 715                                 <clade>
 716                                   <taxonomy>
 717                                     <id provider="uniprot">6340</id>
 718                                     <scientific_name>Annelida</scientific_name>
 719                                     <rank>phylum</rank>
 720                                   </taxonomy>
 721                                   <clade>
 722                                     <name>CAP</name>
 723                                     <taxonomy>
 724                                       <id provider="uniprot">283909</id>
 725                                       <scientific_name>Capitella teleta</scientific_name>
 726                                       <rank>species</rank>
 727                                     </taxonomy>
 728                                   </clade>
 729                                   <clade>
 730                                     <name>HELRO</name>
 731                                     <taxonomy>
 732                                       <id provider="uniprot">6412</id>
 733                                       <code>HELRO</code>
 734                                       <scientific_name>Helobdella robusta</scientific_name>
 735                                       <common_name>Californian leech</common_name>
 736                                       <rank>species</rank>
 737                                     </taxonomy>
 738                                   </clade>
 739                                 </clade>
 740                                 <clade>
 741                                   <name>LOTGI</name>
 742                                   <taxonomy>
 743                                     <id provider="uniprot">225164</id>
 744                                     <code>LOTGI</code>
 745                                     <scientific_name>Lottia gigantea</scientific_name>
 746                                     <common_name>Owl limpet</common_name>
 747                                     <rank>species</rank>
 748                                   </taxonomy>
 749                                 </clade>
 750                               </clade>
 751                               <clade>
 752                                 <taxonomy>
 753                                   <id provider="uniprot">6157</id>
 754                                   <scientific_name>Platyhelminthes</scientific_name>
 755                                   <rank>phylum</rank>
 756                                 </taxonomy>
 757                                 <clade>
 758                                   <name>SCHMA</name>
 759                                   <taxonomy>
 760                                     <id provider="uniprot">6183</id>
 761                                     <code>SCHMA</code>
 762                                     <scientific_name>Schistosoma mansoni</scientific_name>
 763                                     <common_name>Blood fluke</common_name>
 764                                     <rank>species</rank>
 765                                   </taxonomy>
 766                                 </clade>
 767                                 <clade>
 768                                   <name>SCHMD</name>
 769                                   <taxonomy>
 770                                     <id provider="uniprot">79327</id>
 771                                     <code>SCHMD</code>
 772                                     <scientific_name>Schmidtea mediterranea</scientific_name>
 773                                     <common_name>Freshwater planarian flatworm</common_name>
 774                                     <rank>species</rank>
 775                                   </taxonomy>
 776                                 </clade>
 777                               </clade>
 778                             </clade>
 779                           </clade>
 780                         </clade>
 781                         <clade>
 782                           <name>Cnidaria</name>
 783                           <taxonomy>
 784                             <id provider="uniprot">6073</id>
 785                             <scientific_name>Cnidaria</scientific_name>
 786                             <rank>phylum</rank>
 787                           </taxonomy>
 788                           <clade>
 789                             <name>NEMVE</name>
 790                             <taxonomy>
 791                               <id provider="uniprot">45351</id>
 792                               <code>NEMVE</code>
 793                               <scientific_name>Nematostella vectensis</scientific_name>
 794                               <common_name>Starlet sea anemone</common_name>
 795                               <rank>species</rank>
 796                             </taxonomy>
 797                           </clade>
 798                           <clade>
 799                             <name>HYDMA</name>
 800                             <taxonomy>
 801                               <id provider="eol">9119928</id>
 802                               <code>HYDMA</code>
 803                               <scientific_name>Hydra magnipapillata</scientific_name>
 804                               <authority>Ito, 1947</authority>
 805                               <rank>species</rank>
 806                               <uri>http://www.nig.ac.jp/labs/OntoGen/magni.html</uri>
 807                             </taxonomy>
 808                           </clade>
 809                         </clade>
 810                       </clade>
 811                       <clade>
 812                         <name>TRIAD</name>
 813                         <taxonomy>
 814                           <id provider="uniprot">10228</id>
 815                           <code>TRIAD</code>
 816                           <scientific_name>Trichoplax adhaerens</scientific_name>
 817                           <rank>species</rank>
 818                         </taxonomy>
 819                         <reference doi="10.1073/pnas.0602076103">
 820                         </reference>
 821                       </clade>
 822                     </clade>
 823                     <clade>
 824                       <name>AMPQU</name>
 825                       <taxonomy>
 826                         <id provider="uniprot">400682</id>
 827                         <code>AMPQU</code>
 828                         <scientific_name>Amphimedon queenslandica</scientific_name>
 829                         <rank>species</rank>
 830                       </taxonomy>
 831                     </clade>
 832                   </clade>
 833                   <clade>
 834                     <taxonomy>
 835                       <id provider="uniprot">81524</id>
 836                       <scientific_name>Codonosigidae</scientific_name>
 837                       <rank>family</rank>
 838                     </taxonomy>
 839                     <clade>
 840                       <name>MONBE</name>
 841                       <taxonomy>
 842                         <id provider="uniprot">81824</id>
 843                         <code>MONBE</code>
 844                         <scientific_name>Monosiga brevicollis</scientific_name>
 845                         <common_name>Choanoflagellate</common_name>
 846                         <rank>species</rank>
 847                       </taxonomy>
 848                     </clade>
 849                     <clade>
 850                       <name>SALROS</name>
 851                       <taxonomy>
 852                         <id provider="uniprot">222925</id>
 853                         <scientific_name>Salpingoeca rosetta</scientific_name>
 854                         <synonym>Proterospongia sp. ATCC 50818</synonym>
 855                         <rank>species</rank>
 856                       </taxonomy>
 857                     </clade>
 858                   </clade>
 859                 </clade>
 860                 <clade>
 861                   <name>Ichthyophonida &amp; Filasterea</name>
 862                   <clade>
 863                     <taxonomy>
 864                       <id provider="uniprot">198625</id>
 865                       <scientific_name>Ichthyophonida</scientific_name>
 866                       <rank>order</rank>
 867                     </taxonomy>
 868                     <clade>
 869                       <name>AMOPA</name>
 870                       <taxonomy>
 871                         <id provider="uniprot">4881</id>
 872                         <code>AMOPA</code>
 873                         <scientific_name>Amoebidium parasiticum</scientific_name>
 874                         <rank>species</rank>
 875                       </taxonomy>
 876                     </clade>
 877                     <clade>
 878                       <name>SPHARC</name>
 879                       <taxonomy>
 880                         <id provider="uniprot">72019</id>
 881                         <scientific_name>Sphaeroforma arctica</scientific_name>
 882                         <rank>species</rank>
 883                       </taxonomy>
 884                     </clade>
 885                   </clade>
 886                   <clade>
 887                     <taxonomy>
 888                       <scientific_name>Filasterea</scientific_name>
 889                     </taxonomy>
 890                     <reference doi="10.1371/journal.pone.0002098">
 891                     </reference>
 892                     <reference>
 893                     </reference>
 894                     <clade>
 895                       <name>MINVIB</name>
 896                       <taxonomy>
 897                         <id provider="uniprot">134558</id>
 898                         <scientific_name>Ministeria vibrans</scientific_name>
 899                         <rank>species</rank>
 900                       </taxonomy>
 901                     </clade>
 902                     <clade>
 903                       <name>CAPOWC</name>
 904                       <taxonomy>
 905                         <id provider="uniprot">192875</id>
 906                         <scientific_name>Capsaspora owczarzaki</scientific_name>
 907                         <rank>species</rank>
 908                       </taxonomy>
 909                     </clade>
 910                   </clade>
 911                 </clade>
 912               </clade>
 913               <clade>
 914                 <taxonomy>
 915                   <scientific_name>Holomycota</scientific_name>
 916                   <synonym>Nucletmycea</synonym>
 917                 </taxonomy>
 918                 <clade>
 919                   <name>Fungi</name>
 920                   <taxonomy>
 921                     <id provider="uniprot">4751</id>
 922                     <scientific_name>Fungi</scientific_name>
 923                     <rank>kingdom</rank>
 924                   </taxonomy>
 925                   <clade>
 926                     <name>Dikarya &amp; Mucoromycotina &amp; Blastocladiomycota &amp; Chytridiomycota</name>
 927                     <clade>
 928                       <name>Dikarya &amp; Mucoromycotina &amp; Blastocladiomycota</name>
 929                       <clade>
 930                         <name>Dikarya &amp; Mucoromycotina</name>
 931                         <clade>
 932                           <taxonomy>
 933                             <id provider="uniprot">451864</id>
 934                             <scientific_name>Dikarya</scientific_name>
 935                             <rank>subkingdom</rank>
 936                           </taxonomy>
 937                           <reference doi="10.1038/nature05110">
 938                           </reference>
 939                           <reference>
 940                           </reference>
 941                           <clade>
 942                             <taxonomy>
 943                               <id provider="uniprot">4890</id>
 944                               <scientific_name>Ascomycota</scientific_name>
 945                               <rank>phylum</rank>
 946                             </taxonomy>
 947                             <clade>
 948                               <name>Pezizomycotina_Saccharomycetales</name>
 949                               <clade>
 950                                 <taxonomy>
 951                                   <id provider="uniprot">147538</id>
 952                                   <scientific_name>Pezizomycotina</scientific_name>
 953                                   <rank>subphylum</rank>
 954                                 </taxonomy>
 955                                 <clade>
 956                                   <name>Sordariomycetes_Dothideomycetes_Eurotiales</name>
 957                                   <clade>
 958                                     <name>Sordariomycetes_Dothideomycetes</name>
 959                                     <clade>
 960                                       <taxonomy>
 961                                         <id provider="uniprot">147541</id>
 962                                         <scientific_name>Dothideomycetes</scientific_name>
 963                                         <rank>class</rank>
 964                                       </taxonomy>
 965                                       <clade>
 966                                         <taxonomy>
 967                                           <id provider="uniprot">41254</id>
 968                                           <scientific_name>Mycosphaerella</scientific_name>
 969                                           <rank>genus</rank>
 970                                         </taxonomy>
 971                                         <clade>
 972                                           <name>MYCFI</name>
 973                                           <taxonomy>
 974                                             <id provider="uniprot">83344</id>
 975                                             <scientific_name>Mycosphaerella fijiensis</scientific_name>
 976                                             <rank>species</rank>
 977                                           </taxonomy>
 978                                         </clade>
 979                                         <clade>
 980                                           <name>MYCGR</name>
 981                                           <taxonomy>
 982                                             <id provider="uniprot">54734</id>
 983                                             <code>MYCGR</code>
 984                                             <scientific_name>Mycosphaerella graminicola</scientific_name>
 985                                             <synonym>Septoria tritici</synonym>
 986                                             <rank>species</rank>
 987                                           </taxonomy>
 988                                         </clade>
 989                                         <clade>
 990                                           <name>MYCPOP</name>
 991                                           <taxonomy>
 992                                             <id provider="uniprot">85929</id>
 993                                             <scientific_name>Mycosphaerella populorum</scientific_name>
 994                                             <synonym>Septoria musiva</synonym>
 995                                             <rank>species</rank>
 996                                           </taxonomy>
 997                                         </clade>
 998                                         <clade>
 999                                           <name>MYCPJ</name>
1000                                           <taxonomy>
1001                                             <id provider="uniprot">64363</id>
1002                                             <code>MYCPJ</code>
1003                                             <scientific_name>Mycosphaerella pini</scientific_name>
1004                                             <common_name>Red band needle blight disease fungus</common_name>
1005                                             <synonym>Dothistroma septosporum</synonym>
1006                                             <synonym>Dothistroma pini</synonym>
1007                                             <rank>species</rank>
1008                                           </taxonomy>
1009                                         </clade>
1010                                       </clade>
1011                                       <clade>
1012                                         <taxonomy>
1013                                           <id provider="uniprot">715340</id>
1014                                           <scientific_name>Pleosporineae</scientific_name>
1015                                           <rank>suborder</rank>
1016                                         </taxonomy>
1017                                         <clade>
1018                                           <taxonomy>
1019                                             <id provider="uniprot">28556</id>
1020                                             <scientific_name>Pleosporaceae</scientific_name>
1021                                             <rank>family</rank>
1022                                           </taxonomy>
1023                                           <clade>
1024                                             <name>PYRTR</name>
1025                                             <taxonomy>
1026                                               <id provider="uniprot">426418</id>
1027                                               <code>PYRTR</code>
1028                                               <scientific_name>Pyrenophora tritici-repentis (strain Pt-1C-BFP)</scientific_name>
1029                                               <common_name>Wheat tan spot fungus</common_name>
1030                                               <synonym>Drechslera tritici-repentis</synonym>
1031                                             </taxonomy>
1032                                           </clade>
1033                                           <clade>
1034                                             <name>COCHE</name>
1035                                             <taxonomy>
1036                                               <id provider="uniprot">5016</id>
1037                                               <code>COCHE</code>
1038                                               <scientific_name>Cochliobolus heterostrophus</scientific_name>
1039                                               <synonym>Drechslera maydis</synonym>
1040                                               <rank>species</rank>
1041                                             </taxonomy>
1042                                           </clade>
1043                                         </clade>
1044                                         <clade>
1045                                           <name>PHANO</name>
1046                                           <taxonomy>
1047                                             <id provider="uniprot">13684</id>
1048                                             <code>PHANO</code>
1049                                             <scientific_name>Phaeosphaeria nodorum</scientific_name>
1050                                             <common_name>Glume blotch fungus</common_name>
1051                                             <synonym>Septoria nodorum</synonym>
1052                                             <rank>species</rank>
1053                                           </taxonomy>
1054                                         </clade>
1055                                       </clade>
1056                                     </clade>
1057                                     <clade>
1058                                       <taxonomy>
1059                                         <id provider="uniprot">147550</id>
1060                                         <scientific_name>Sordariomycetes</scientific_name>
1061                                         <rank>class</rank>
1062                                       </taxonomy>
1063                                       <clade>
1064                                         <name>Magnaporthales_Hypocreales</name>
1065                                         <clade>
1066                                           <taxonomy>
1067                                             <id provider="uniprot">5125</id>
1068                                             <scientific_name>Hypocreales</scientific_name>
1069                                             <rank>order</rank>
1070                                           </taxonomy>
1071                                           <clade>
1072                                             <name>TRIVE</name>
1073                                             <taxonomy>
1074                                               <id provider="uniprot">29875</id>
1075                                               <code>TRIVE</code>
1076                                               <scientific_name>Trichoderma virens</scientific_name>
1077                                               <rank>species</rank>
1078                                             </taxonomy>
1079                                           </clade>
1080                                           <clade>
1081                                             <name>GIBZE</name>
1082                                             <taxonomy>
1083                                               <id provider="uniprot">5518</id>
1084                                               <code>GIBZE</code>
1085                                               <scientific_name>Gibberella zeae</scientific_name>
1086                                               <common_name>Wheat head blight fungus</common_name>
1087                                               <synonym>Fusarium graminearum</synonym>
1088                                               <rank>species</rank>
1089                                             </taxonomy>
1090                                           </clade>
1091                                         </clade>
1092                                         <clade>
1093                                           <name>MAGGR</name>
1094                                           <taxonomy>
1095                                             <id provider="uniprot">148305</id>
1096                                             <code>MAGGR</code>
1097                                             <scientific_name>Magnaporthe grisea</scientific_name>
1098                                             <common_name>Rice blast fungus</common_name>
1099                                             <synonym>Pyricularia grisea</synonym>
1100                                             <rank>species</rank>
1101                                           </taxonomy>
1102                                         </clade>
1103                                       </clade>
1104                                       <clade>
1105                                         <taxonomy>
1106                                           <id provider="uniprot">5139</id>
1107                                           <scientific_name>Sordariales</scientific_name>
1108                                           <rank>order</rank>
1109                                         </taxonomy>
1110                                         <clade>
1111                                           <taxonomy>
1112                                             <id provider="uniprot">35718</id>
1113                                             <scientific_name>Chaetomiaceae</scientific_name>
1114                                             <rank>family</rank>
1115                                           </taxonomy>
1116                                           <clade>
1117                                             <name>CHAGB</name>
1118                                             <taxonomy>
1119                                               <id provider="eol">1029505</id>
1120                                               <code>CHAGB</code>
1121                                               <scientific_name>Chaetomium globosum</scientific_name>
1122                                               <authority>Kunze 1817</authority>
1123                                               <common_name>Soil fungus</common_name>
1124                                               <rank>species</rank>
1125                                             </taxonomy>
1126                                           </clade>
1127                                           <clade>
1128                                             <name>THITE</name>
1129                                             <taxonomy>
1130                                               <id provider="eol">193532</id>
1131                                               <scientific_name>Thielavia terrestris</scientific_name>
1132                                               <authority>Malloch &amp; Cain 1972</authority>
1133                                               <synonym>Acremonium alabamense</synonym>
1134                                               <rank>species</rank>
1135                                             </taxonomy>
1136                                           </clade>
1137                                         </clade>
1138                                         <clade>
1139                                           <name>NEUCR</name>
1140                                           <taxonomy>
1141                                             <id provider="uniprot">5141</id>
1142                                             <code>NEUCR</code>
1143                                             <scientific_name>Neurospora crassa</scientific_name>
1144                                             <rank>species</rank>
1145                                           </taxonomy>
1146                                         </clade>
1147                                       </clade>
1148                                     </clade>
1149                                   </clade>
1150                                   <clade>
1151                                     <taxonomy>
1152                                       <id provider="uniprot">28568</id>
1153                                       <scientific_name>Trichocomaceae</scientific_name>
1154                                       <rank>family</rank>
1155                                     </taxonomy>
1156                                     <clade>
1157                                       <name>Neosartorya_Emericella</name>
1158                                       <clade>
1159                                         <name>NEOFI</name>
1160                                         <taxonomy>
1161                                           <id provider="uniprot">331117</id>
1162                                           <code>NEOFI</code>
1163                                           <scientific_name>Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181)</scientific_name>
1164                                           <synonym>Aspergillus fischerianus</synonym>
1165                                         </taxonomy>
1166                                       </clade>
1167                                       <clade>
1168                                         <name>EMENI</name>
1169                                         <taxonomy>
1170                                           <id provider="eol">195546</id>
1171                                           <code>EMENI</code>
1172                                           <scientific_name>Emericella nidulans</scientific_name>
1173                                           <authority>Vuill. 1927</authority>
1174                                           <synonym>Aspergillus nidulans</synonym>
1175                                           <rank>species</rank>
1176                                         </taxonomy>
1177                                       </clade>
1178                                     </clade>
1179                                     <clade>
1180                                       <taxonomy>
1181                                         <id provider="uniprot">5052</id>
1182                                         <scientific_name>Aspergillus</scientific_name>
1183                                         <rank>genus</rank>
1184                                       </taxonomy>
1185                                       <clade>
1186                                         <name>ASPFL</name>
1187                                         <taxonomy>
1188                                           <id provider="uniprot">5059</id>
1189                                           <code>ASPFL</code>
1190                                           <scientific_name>Aspergillus flavus</scientific_name>
1191                                           <rank>species</rank>
1192                                         </taxonomy>
1193                                       </clade>
1194                                       <clade>
1195                                         <name>ASPNG</name>
1196                                         <taxonomy>
1197                                           <id provider="uniprot">5061</id>
1198                                           <code>ASPNG</code>
1199                                           <scientific_name>Aspergillus niger</scientific_name>
1200                                           <rank>species</rank>
1201                                         </taxonomy>
1202                                       </clade>
1203                                     </clade>
1204                                   </clade>
1205                                 </clade>
1206                                 <clade>
1207                                   <taxonomy>
1208                                     <id provider="uniprot">33183</id>
1209                                     <scientific_name>Onygenales</scientific_name>
1210                                     <rank>order</rank>
1211                                   </taxonomy>
1212                                   <clade>
1213                                     <name>COCIM</name>
1214                                     <taxonomy>
1215                                       <id provider="uniprot">5501</id>
1216                                       <code>COCIM</code>
1217                                       <scientific_name>Coccidioides immitis</scientific_name>
1218                                       <common_name>Valley fever fungus</common_name>
1219                                       <rank>species</rank>
1220                                     </taxonomy>
1221                                   </clade>
1222                                   <clade>
1223                                     <name>UNCRE</name>
1224                                     <taxonomy>
1225                                       <id provider="uniprot">336963</id>
1226                                       <code>UNCRE</code>
1227                                       <scientific_name>Uncinocarpus reesii (strain UAMH 1704)</scientific_name>
1228                                     </taxonomy>
1229                                   </clade>
1230                                 </clade>
1231                               </clade>
1232                               <clade>
1233                                 <taxonomy>
1234                                   <id provider="uniprot">4892</id>
1235                                   <scientific_name>Saccharomycetales</scientific_name>
1236                                   <common_name>budding yeasts</common_name>
1237                                   <rank>order</rank>
1238                                 </taxonomy>
1239                                 <clade>
1240                                   <name>Candida_Debaryomyces_Saccharomycetacea</name>
1241                                   <clade>
1242                                     <taxonomy>
1243                                       <id provider="uniprot">4893</id>
1244                                       <scientific_name>Saccharomycetaceae</scientific_name>
1245                                       <rank>family</rank>
1246                                     </taxonomy>
1247                                     <clade>
1248                                       <name>Saccharomyces_Pichia</name>
1249                                       <clade>
1250                                         <name>Saccharomyces</name>
1251                                         <clade>
1252                                           <name>YEAST</name>
1253                                           <taxonomy>
1254                                             <id provider="uniprot">4932</id>
1255                                             <code>YEAST</code>
1256                                             <scientific_name>Saccharomyces cerevisiae</scientific_name>
1257                                             <common_name>Baker&apos;s yeast</common_name>
1258                                             <rank>species</rank>
1259                                           </taxonomy>
1260                                         </clade>
1261                                         <clade>
1262                                           <name>SACCA</name>
1263                                           <taxonomy>
1264                                             <id provider="uniprot">27288</id>
1265                                             <code>SACCA</code>
1266                                             <scientific_name>Saccharomyces castellii</scientific_name>
1267                                             <common_name>Yeast</common_name>
1268                                             <rank>species</rank>
1269                                           </taxonomy>
1270                                         </clade>
1271                                       </clade>
1272                                       <clade>
1273                                         <name>PICAN</name>
1274                                         <taxonomy>
1275                                           <id provider="uniprot">4905</id>
1276                                           <code>PICAN</code>
1277                                           <scientific_name>Pichia angusta</scientific_name>
1278                                           <common_name>Yeast</common_name>
1279                                           <synonym>Hansenula polymorpha</synonym>
1280                                           <rank>species</rank>
1281                                         </taxonomy>
1282                                       </clade>
1283                                     </clade>
1284                                     <clade>
1285                                       <name>Kluyveromyces_Ashbya</name>
1286                                       <clade>
1287                                         <name>ASHGO</name>
1288                                         <taxonomy>
1289                                           <id provider="uniprot">33169</id>
1290                                           <code>ASHGO</code>
1291                                           <scientific_name>Ashbya gossypii</scientific_name>
1292                                           <common_name>Yeast</common_name>
1293                                           <synonym>Eremothecium gossypii</synonym>
1294                                           <rank>species</rank>
1295                                         </taxonomy>
1296                                       </clade>
1297                                       <clade>
1298                                         <name>Kluyveromyces</name>
1299                                         <clade>
1300                                           <name>KLULA</name>
1301                                           <taxonomy>
1302                                             <id provider="uniprot">28985</id>
1303                                             <code>KLULA</code>
1304                                             <scientific_name>Kluyveromyces lactis</scientific_name>
1305                                             <common_name>Yeast</common_name>
1306                                             <synonym>Candida sphaerica</synonym>
1307                                             <rank>species</rank>
1308                                           </taxonomy>
1309                                         </clade>
1310                                         <clade>
1311                                           <name>KLUWA</name>
1312                                           <taxonomy>
1313                                             <id provider="uniprot">4914</id>
1314                                             <code>KLUWA</code>
1315                                             <scientific_name>Kluyveromyces waltii</scientific_name>
1316                                             <common_name>Yeast</common_name>
1317                                             <rank>species</rank>
1318                                           </taxonomy>
1319                                         </clade>
1320                                       </clade>
1321                                     </clade>
1322                                   </clade>
1323                                   <clade>
1324                                     <name>Candida_Debaryomyces</name>
1325                                     <clade>
1326                                       <taxonomy>
1327                                         <id provider="uniprot">5475</id>
1328                                         <scientific_name>Candida</scientific_name>
1329                                         <rank>genus</rank>
1330                                       </taxonomy>
1331                                       <clade>
1332                                         <name>CANAL</name>
1333                                         <taxonomy>
1334                                           <id provider="uniprot">5476</id>
1335                                           <code>CANAL</code>
1336                                           <scientific_name>Candida albicans</scientific_name>
1337                                           <common_name>Yeast</common_name>
1338                                           <rank>species</rank>
1339                                         </taxonomy>
1340                                       </clade>
1341                                       <clade>
1342                                         <name>CANTR</name>
1343                                         <taxonomy>
1344                                           <id provider="uniprot">5482</id>
1345                                           <code>CANTR</code>
1346                                           <scientific_name>Candida tropicalis</scientific_name>
1347                                           <common_name>Yeast</common_name>
1348                                           <rank>species</rank>
1349                                         </taxonomy>
1350                                       </clade>
1351                                     </clade>
1352                                     <clade>
1353                                       <name>DEBHA</name>
1354                                       <taxonomy>
1355                                         <id provider="uniprot">4959</id>
1356                                         <code>DEBHA</code>
1357                                         <scientific_name>Debaryomyces hansenii</scientific_name>
1358                                         <common_name>Yeast</common_name>
1359                                         <synonym>Torulaspora hansenii</synonym>
1360                                         <rank>species</rank>
1361                                       </taxonomy>
1362                                     </clade>
1363                                   </clade>
1364                                 </clade>
1365                                 <clade>
1366                                   <name>YARLI</name>
1367                                   <taxonomy>
1368                                     <id provider="uniprot">4952</id>
1369                                     <code>YARLI</code>
1370                                     <scientific_name>Yarrowia lipolytica</scientific_name>
1371                                     <synonym>Candida lipolytica</synonym>
1372                                     <rank>species</rank>
1373                                   </taxonomy>
1374                                 </clade>
1375                               </clade>
1376                             </clade>
1377                             <clade>
1378                               <taxonomy>
1379                                 <id provider="uniprot">451866</id>
1380                                 <scientific_name>Taphrinomycotina</scientific_name>
1381                                 <rank>subphylum</rank>
1382                               </taxonomy>
1383                               <clade>
1384                                 <taxonomy>
1385                                   <id provider="uniprot">4895</id>
1386                                   <scientific_name>Schizosaccharomyces</scientific_name>
1387                                   <rank>genus</rank>
1388                                 </taxonomy>
1389                                 <clade>
1390                                   <name>SCHPO</name>
1391                                   <taxonomy>
1392                                     <id provider="uniprot">4896</id>
1393                                     <code>SCHPO</code>
1394                                     <scientific_name>Schizosaccharomyces pombe</scientific_name>
1395                                     <common_name>Fission yeast</common_name>
1396                                     <rank>species</rank>
1397                                   </taxonomy>
1398                                 </clade>
1399                                 <clade>
1400                                   <name>SCHJP</name>
1401                                   <taxonomy>
1402                                     <id provider="uniprot">4897</id>
1403                                     <code>SCHJP</code>
1404                                     <scientific_name>Schizosaccharomyces japonicus</scientific_name>
1405                                     <common_name>Fission yeast</common_name>
1406                                     <rank>species</rank>
1407                                   </taxonomy>
1408                                 </clade>
1409                               </clade>
1410                               <clade>
1411                                 <name>PNECA</name>
1412                                 <taxonomy>
1413                                   <id provider="uniprot">4754</id>
1414                                   <code>PNECA</code>
1415                                   <scientific_name>Pneumocystis carinii</scientific_name>
1416                                   <rank>species</rank>
1417                                 </taxonomy>
1418                               </clade>
1419                             </clade>
1420                           </clade>
1421                           <clade>
1422                             <taxonomy>
1423                               <id provider="uniprot">5204</id>
1424                               <scientific_name>Basidiomycota</scientific_name>
1425                               <rank>phylum</rank>
1426                             </taxonomy>
1427                             <clade>
1428                               <name>Agaricomycotina &amp; Ustilago &amp; Pucciniomycotina</name>
1429                               <clade>
1430                                 <name>Agaricomycotina &amp; Ustilago</name>
1431                                 <clade>
1432                                   <taxonomy>
1433                                     <id provider="uniprot">5302</id>
1434                                     <scientific_name>Agaricomycotina</scientific_name>
1435                                   </taxonomy>
1436                                   <clade>
1437                                     <taxonomy>
1438                                       <id provider="uniprot">155619</id>
1439                                       <scientific_name>Homobasidiomycetes</scientific_name>
1440                                       <rank>class</rank>
1441                                     </taxonomy>
1442                                     <reference doi="10.1098/rspb.2002.2123">
1443                                       <desc>Evolution of complex fruiting–body morphologies in homobasidiomycetes</desc>
1444                                     </reference>
1445                                     <clade>
1446                                       <name>Agaricomycetidae &amp; Gloeophyllum &amp; Aphyllophorales</name>
1447                                       <clade>
1448                                         <name>Agaricomycetidae &amp; Gloeophyllum</name>
1449                                         <clade>
1450                                           <taxonomy>
1451                                             <id provider="uniprot">452333</id>
1452                                             <scientific_name>Agaricomycetidae</scientific_name>
1453                                             <rank>subclass</rank>
1454                                           </taxonomy>
1455                                           <clade>
1456                                             <taxonomy>
1457                                               <id provider="uniprot">5338</id>
1458                                               <scientific_name>Agaricales</scientific_name>
1459                                               <rank>order</rank>
1460                                             </taxonomy>
1461                                             <clade>
1462                                               <name>Agaricus &amp; Coprinopsis &amp; Laccaria</name>
1463                                               <clade>
1464                                                 <name>Agaricus &amp; Coprinopsis</name>
1465                                                 <clade>
1466                                                   <name>AGABB</name>
1467                                                   <taxonomy>
1468                                                     <id provider="uniprot">192524</id>
1469                                                     <scientific_name>Agaricus bisporus var. burnettii</scientific_name>
1470                                                   </taxonomy>
1471                                                 </clade>
1472                                                 <clade>
1473                                                   <name>COPCI</name>
1474                                                   <taxonomy>
1475                                                     <id provider="uniprot">5346</id>
1476                                                     <code>COPCI</code>
1477                                                     <scientific_name>Coprinopsis cinerea</scientific_name>
1478                                                     <common_name>Inky cap fungus</common_name>
1479                                                     <synonym>Hormographiella aspergillata</synonym>
1480                                                     <rank>species</rank>
1481                                                   </taxonomy>
1482                                                 </clade>
1483                                               </clade>
1484                                               <clade>
1485                                                 <name>LACBI</name>
1486                                                 <taxonomy>
1487                                                   <id provider="uniprot">29883</id>
1488                                                   <code>LACBI</code>
1489                                                   <scientific_name>Laccaria bicolor</scientific_name>
1490                                                   <common_name>Bicoloured deceiver</common_name>
1491                                                   <synonym>Laccaria laccata var. bicolor</synonym>
1492                                                   <rank>species</rank>
1493                                                 </taxonomy>
1494                                               </clade>
1495                                             </clade>
1496                                             <clade>
1497                                               <name>PLEOS</name>
1498                                               <taxonomy>
1499                                                 <id provider="uniprot">5322</id>
1500                                                 <code>PLEOS</code>
1501                                                 <scientific_name>Pleurotus ostreatus</scientific_name>
1502                                                 <common_name>Oyster mushroom</common_name>
1503                                                 <synonym>White-rot fungus</synonym>
1504                                                 <rank>species</rank>
1505                                               </taxonomy>
1506                                             </clade>
1507                                           </clade>
1508                                           <clade>
1509                                             <name>SERLA</name>
1510                                             <taxonomy>
1511                                               <id provider="uniprot">85982</id>
1512                                               <scientific_name>Serpula lacrymans</scientific_name>
1513                                               <common_name>dry rot fungus</common_name>
1514                                               <rank>species</rank>
1515                                             </taxonomy>
1516                                           </clade>
1517                                         </clade>
1518                                         <clade>
1519                                           <name>GLOTR</name>
1520                                           <taxonomy>
1521                                             <id provider="uniprot">104355</id>
1522                                             <code>GLOTR</code>
1523                                             <scientific_name>Gloeophyllum trabeum</scientific_name>
1524                                             <common_name>Brown rot fungus</common_name>
1525                                             <rank>species</rank>
1526                                           </taxonomy>
1527                                         </clade>
1528                                       </clade>
1529                                       <clade>
1530                                         <taxonomy>
1531                                           <id provider="uniprot">5303</id>
1532                                           <scientific_name>Aphyllophorales</scientific_name>
1533                                           <authority>Gäum. (1926)</authority>
1534                                           <common_name>Shelf Fungi</common_name>
1535                                           <synonym>Polyporales</synonym>
1536                                           <rank>order</rank>
1537                                         </taxonomy>
1538                                         <clade>
1539                                           <name>Postia &amp; Fomitopsis &amp; Wolfiporia</name>
1540                                           <clade>
1541                                             <name>Postia &amp; Fomitopsis</name>
1542                                             <clade>
1543                                               <name>POSPL</name>
1544                                               <taxonomy>
1545                                                 <id provider="uniprot">104341</id>
1546                                                 <scientific_name>Postia placenta</scientific_name>
1547                                                 <rank>species</rank>
1548                                               </taxonomy>
1549                                             </clade>
1550                                             <clade>
1551                                               <name>FOMPIN</name>
1552                                               <taxonomy>
1553                                                 <id provider="uniprot">40483</id>
1554                                                 <scientific_name>Fomitopsis pinicola</scientific_name>
1555                                                 <authority>P. Karst. 1881</authority>
1556                                                 <common_name>Red banded polypore</common_name>
1557                                                 <synonym>Fomes pinicola</synonym>
1558                                                 <rank>species</rank>
1559                                               </taxonomy>
1560                                             </clade>
1561                                           </clade>
1562                                           <clade>
1563                                             <name>WOLCOC</name>
1564                                             <taxonomy>
1565                                               <id provider="uniprot">81056</id>
1566                                               <scientific_name>Wolfiporia cocos</scientific_name>
1567                                               <rank>species</rank>
1568                                             </taxonomy>
1569                                           </clade>
1570                                         </clade>
1571                                         <clade>
1572                                           <name>CERSU</name>
1573                                           <taxonomy>
1574                                             <id provider="uniprot">42742</id>
1575                                             <code>CERSU</code>
1576                                             <scientific_name>Ceriporiopsis subvermispora</scientific_name>
1577                                             <rank>species</rank>
1578                                           </taxonomy>
1579                                         </clade>
1580                                       </clade>
1581                                     </clade>
1582                                     <clade>
1583                                       <name>HETAN</name>
1584                                       <taxonomy>
1585                                         <id provider="uniprot">13563</id>
1586                                         <code>HETAN</code>
1587                                         <scientific_name>Heterobasidion annosum</scientific_name>
1588                                         <common_name>Root rot fungus</common_name>
1589                                         <rank>species</rank>
1590                                       </taxonomy>
1591                                     </clade>
1592                                   </clade>
1593                                   <clade>
1594                                     <taxonomy>
1595                                       <id provider="uniprot">5215</id>
1596                                       <scientific_name>Tremellaceae</scientific_name>
1597                                       <rank>family</rank>
1598                                     </taxonomy>
1599                                     <clade>
1600                                       <name>CRYNE</name>
1601                                       <taxonomy>
1602                                         <id provider="uniprot">5207</id>
1603                                         <code>CRYNE</code>
1604                                         <scientific_name>Cryptococcus neoformans</scientific_name>
1605                                         <synonym>Filobasidiella neoformans</synonym>
1606                                         <rank>species</rank>
1607                                       </taxonomy>
1608                                     </clade>
1609                                     <clade>
1610                                       <name>TREME</name>
1611                                       <taxonomy>
1612                                         <id provider="eol">1029985</id>
1613                                         <code>TREME</code>
1614                                         <scientific_name>Tremella mesenterica</scientific_name>
1615                                         <authority>Pers. 1800</authority>
1616                                         <common_name>Jelly fungus</common_name>
1617                                         <synonym>Yellow Brain</synonym>
1618                                         <synonym>Tremella lutescens</synonym>
1619                                         <rank>species</rank>
1620                                       </taxonomy>
1621                                     </clade>
1622                                   </clade>
1623                                 </clade>
1624                                 <clade>
1625                                   <name>USTMA</name>
1626                                   <taxonomy>
1627                                     <id provider="uniprot">5270</id>
1628                                     <code>USTMA</code>
1629                                     <scientific_name>Ustilago maydis</scientific_name>
1630                                     <common_name>Smut fungus</common_name>
1631                                     <rank>species</rank>
1632                                   </taxonomy>
1633                                 </clade>
1634                               </clade>
1635                               <clade>
1636                                 <taxonomy>
1637                                   <id provider="uniprot">29000</id>
1638                                   <scientific_name>Pucciniomycotina</scientific_name>
1639                                   <rank>subphylum</rank>
1640                                 </taxonomy>
1641                                 <clade>
1642                                   <taxonomy>
1643                                     <id provider="uniprot">5258</id>
1644                                     <scientific_name>Pucciniales</scientific_name>
1645                                     <common_name>rusts</common_name>
1646                                     <rank>order</rank>
1647                                   </taxonomy>
1648                                   <clade>
1649                                     <name>PUCGR</name>
1650                                     <taxonomy>
1651                                       <id provider="eol">1029947</id>
1652                                       <code>PUCGR</code>
1653                                       <scientific_name>Puccinia graminis</scientific_name>
1654                                       <authority>Pers. 1794</authority>
1655                                       <common_name>Black stem rust fungus</common_name>
1656                                       <synonym>Wheat rust</synonym>
1657                                       <rank>species</rank>
1658                                     </taxonomy>
1659                                   </clade>
1660                                   <clade>
1661                                     <name>MELLP</name>
1662                                     <taxonomy>
1663                                       <id provider="eol">156696</id>
1664                                       <code>MELLP</code>
1665                                       <scientific_name>Melampsora laricis-populina</scientific_name>
1666                                       <authority>Kleb. 1902</authority>
1667                                       <synonym>Melampsora larici-populina</synonym>
1668                                       <synonym>Melampsora laricipopulina</synonym>
1669                                       <rank>species</rank>
1670                                     </taxonomy>
1671                                   </clade>
1672                                 </clade>
1673                                 <clade>
1674                                   <taxonomy>
1675                                     <id provider="uniprot">89013</id>
1676                                     <scientific_name>mitosporic Sporidiobolales</scientific_name>
1677                                   </taxonomy>
1678                                   <clade>
1679                                     <name>SPORO</name>
1680                                     <taxonomy>
1681                                       <id provider="eol">1013696</id>
1682                                       <scientific_name>Sporobolomyces roseus</scientific_name>
1683                                       <authority>Kluyver &amp; C. B. Niel 1924</authority>
1684                                       <rank>species</rank>
1685                                     </taxonomy>
1686                                   </clade>
1687                                   <clade>
1688                                     <name>RHOGR</name>
1689                                     <taxonomy>
1690                                       <id provider="uniprot">29898</id>
1691                                       <code>RHOGR</code>
1692                                       <scientific_name>Rhodotorula graminis</scientific_name>
1693                                       <common_name>Yeast</common_name>
1694                                       <rank>species</rank>
1695                                     </taxonomy>
1696                                   </clade>
1697                                 </clade>
1698                               </clade>
1699                             </clade>
1700                             <clade>
1701                               <name>WALSE</name>
1702                               <taxonomy>
1703                                 <id provider="uniprot">148960</id>
1704                                 <code>WALSE</code>
1705                                 <scientific_name>Wallemia sebi</scientific_name>
1706                                 <rank>species</rank>
1707                               </taxonomy>
1708                             </clade>
1709                           </clade>
1710                         </clade>
1711                         <clade>
1712                           <taxonomy>
1713                             <id provider="uniprot">451507</id>
1714                             <scientific_name>Mucoromycotina</scientific_name>
1715                             <rank>subphylum</rank>
1716                           </taxonomy>
1717                           <clade>
1718                             <taxonomy>
1719                               <id provider="uniprot">34489</id>
1720                               <scientific_name>Mucoraceae</scientific_name>
1721                               <rank>family</rank>
1722                             </taxonomy>
1723                             <clade>
1724                               <name>MUCCI</name>
1725                               <taxonomy>
1726                                 <id provider="uniprot">36080</id>
1727                                 <code>MUCCI</code>
1728                                 <scientific_name>Mucor circinelloides</scientific_name>
1729                                 <synonym>Mucor griseo-roseus</synonym>
1730                                 <rank>species</rank>
1731                               </taxonomy>
1732                             </clade>
1733                             <clade>
1734                               <name>PHYBL</name>
1735                               <taxonomy>
1736                                 <id provider="uniprot">4837</id>
1737                                 <code>PHYBL</code>
1738                                 <scientific_name>Phycomyces blakesleeanus</scientific_name>
1739                                 <rank>species</rank>
1740                               </taxonomy>
1741                             </clade>
1742                             <clade>
1743                               <name>RHIOR</name>
1744                               <taxonomy>
1745                                 <id provider="uniprot">64495</id>
1746                                 <code>RHIOR</code>
1747                                 <scientific_name>Rhizopus oryzae</scientific_name>
1748                                 <synonym>Rhizopus delemar</synonym>
1749                                 <rank>species</rank>
1750                               </taxonomy>
1751                             </clade>
1752                           </clade>
1753                           <clade>
1754                             <name>MORVER</name>
1755                             <taxonomy>
1756                               <id provider="uniprot">78898</id>
1757                               <scientific_name>Mortierella verticillata</scientific_name>
1758                               <rank>species</rank>
1759                             </taxonomy>
1760                           </clade>
1761                         </clade>
1762                       </clade>
1763                       <clade>
1764                         <name>ALLMA</name>
1765                         <taxonomy>
1766                           <id provider="uniprot">28583</id>
1767                           <code>ALLMA</code>
1768                           <scientific_name>Allomyces macrogynus</scientific_name>
1769                           <rank>species</rank>
1770                         </taxonomy>
1771                       </clade>
1772                     </clade>
1773                     <clade>
1774                       <taxonomy>
1775                         <id provider="uniprot">451435</id>
1776                         <scientific_name>Chytridiomycetes</scientific_name>
1777                         <rank>class</rank>
1778                       </taxonomy>
1779                       <clade>
1780                         <name>BATDE</name>
1781                         <taxonomy>
1782                           <id provider="uniprot">109871</id>
1783                           <code>BATDE</code>
1784                           <scientific_name>Batrachochytrium dendrobatidis</scientific_name>
1785                           <common_name>Frog chytrid fungus</common_name>
1786                           <rank>species</rank>
1787                         </taxonomy>
1788                       </clade>
1789                       <clade>
1790                         <name>SPIPN</name>
1791                         <taxonomy>
1792                           <code>SPIPN</code>
1793                           <scientific_name>Spizellomyces punctatus</scientific_name>
1794                           <rank>species</rank>
1795                         </taxonomy>
1796                       </clade>
1797                     </clade>
1798                   </clade>
1799                   <clade>
1800                     <name>ENCCU</name>
1801                     <taxonomy>
1802                       <id provider="uniprot">6035</id>
1803                       <code>ENCCU</code>
1804                       <scientific_name>Encephalitozoon cuniculi</scientific_name>
1805                       <common_name>Microsporidian parasite</common_name>
1806                       <rank>species</rank>
1807                     </taxonomy>
1808                   </clade>
1809                 </clade>
1810                 <clade>
1811                   <name>Fonticula &amp; Nucleariidae</name>
1812                   <reference doi="10.1093/molbev/msp185">
1813                   </reference>
1814                   <clade>
1815                     <name>FONALB</name>
1816                     <taxonomy>
1817                       <id provider="uniprot">691883</id>
1818                       <scientific_name>Fonticula alba</scientific_name>
1819                       <synonym>Fonticula alba Worley, Raper &amp; Hohl. 1979</synonym>
1820                       <rank>species</rank>
1821                     </taxonomy>
1822                   </clade>
1823                   <clade>
1824                     <name>NUCSIM</name>
1825                     <taxonomy>
1826                       <id provider="uniprot">154970</id>
1827                       <scientific_name>Nuclearia simplex</scientific_name>
1828                       <rank>species</rank>
1829                     </taxonomy>
1830                   </clade>
1831                 </clade>
1832               </clade>
1833             </clade>
1834             <clade>
1835               <name>THETRA</name>
1836               <taxonomy>
1837                 <id provider="uniprot">529818</id>
1838                 <scientific_name>Thecamonas trahens</scientific_name>
1839                 <rank>species</rank>
1840               </taxonomy>
1841             </clade>
1842           </clade>
1843           <clade>
1844             <name>Amoebozoa</name>
1845             <taxonomy>
1846               <id provider="uniprot">554915</id>
1847               <scientific_name>Amoebozoa</scientific_name>
1848             </taxonomy>
1849             <clade>
1850               <name>Dictyostelium</name>
1851               <taxonomy>
1852                 <id provider="uniprot">5782</id>
1853                 <scientific_name>Dictyostelium</scientific_name>
1854                 <rank>genus</rank>
1855               </taxonomy>
1856               <clade>
1857                 <name>DICDI</name>
1858                 <taxonomy>
1859                   <id provider="uniprot">44689</id>
1860                   <code>DICDI</code>
1861                   <scientific_name>Dictyostelium discoideum</scientific_name>
1862                   <common_name>Slime mold</common_name>
1863                   <rank>species</rank>
1864                 </taxonomy>
1865               </clade>
1866               <clade>
1867                 <name>DICPU</name>
1868                 <taxonomy>
1869                   <id provider="uniprot">5786</id>
1870                   <code>DICPU</code>
1871                   <scientific_name>Dictyostelium purpureum</scientific_name>
1872                   <common_name>Slime mold</common_name>
1873                   <rank>species</rank>
1874                 </taxonomy>
1875               </clade>
1876             </clade>
1877             <clade>
1878               <name>ENTHI</name>
1879               <taxonomy>
1880                 <id provider="uniprot">5759</id>
1881                 <code>ENTHI</code>
1882                 <scientific_name>Entamoeba histolytica</scientific_name>
1883                 <rank>species</rank>
1884               </taxonomy>
1885             </clade>
1886           </clade>
1887         </clade>
1888         <clade>
1889           <name>Bikonta</name>
1890           <reference doi="10.1099/ijs.0.63216-0">
1891           </reference>
1892           <clade>
1893             <name>Corticata</name>
1894             <clade>
1895               <name>Archaeplastida</name>
1896               <clade>
1897                 <taxonomy>
1898                   <id provider="uniprot">33090</id>
1899                   <scientific_name>Viridiplantae</scientific_name>
1900                   <common_name>green plants</common_name>
1901                   <rank>kingdom</rank>
1902                 </taxonomy>
1903                 <clade>
1904                   <taxonomy>
1905                     <id provider="uniprot">3193</id>
1906                     <scientific_name>Embryophyta</scientific_name>
1907                   </taxonomy>
1908                   <clade>
1909                     <taxonomy>
1910                       <id provider="uniprot">58023</id>
1911                       <scientific_name>Tracheophyta</scientific_name>
1912                     </taxonomy>
1913                     <clade>
1914                       <taxonomy>
1915                         <id provider="uniprot">3398</id>
1916                         <scientific_name>Magnoliophyta</scientific_name>
1917                       </taxonomy>
1918                       <clade>
1919                         <taxonomy>
1920                           <id provider="uniprot">91827</id>
1921                           <scientific_name>core eudicotyledons</scientific_name>
1922                         </taxonomy>
1923                         <clade>
1924                           <taxonomy>
1925                             <id provider="uniprot">71275</id>
1926                             <scientific_name>rosids</scientific_name>
1927                             <rank>subclass</rank>
1928                           </taxonomy>
1929                           <clade>
1930                             <name>fabids &amp; Brassicales</name>
1931                             <clade>
1932                               <taxonomy>
1933                                 <id provider="uniprot">91835</id>
1934                                 <scientific_name>fabids</scientific_name>
1935                               </taxonomy>
1936                               <clade>
1937                                 <taxonomy>
1938                                   <id provider="uniprot">3646</id>
1939                                   <scientific_name>Malpighiales</scientific_name>
1940                                   <rank>order</rank>
1941                                 </taxonomy>
1942                                 <clade>
1943                                   <name>POPTR</name>
1944                                   <taxonomy>
1945                                     <id provider="uniprot">3694</id>
1946                                     <code>POPTR</code>
1947                                     <scientific_name>Populus trichocarpa</scientific_name>
1948                                     <common_name>Western balsam poplar</common_name>
1949                                     <synonym>Populus balsamifera subsp. trichocarpa</synonym>
1950                                     <rank>species</rank>
1951                                   </taxonomy>
1952                                 </clade>
1953                                 <clade>
1954                                   <name>MANES</name>
1955                                   <taxonomy>
1956                                     <id provider="uniprot">3983</id>
1957                                     <code>MANES</code>
1958                                     <scientific_name>Manihot esculenta</scientific_name>
1959                                     <common_name>Tapioca</common_name>
1960                                     <synonym>Jatropha manihot</synonym>
1961                                     <rank>species</rank>
1962                                   </taxonomy>
1963                                 </clade>
1964                               </clade>
1965                               <clade>
1966                                 <name>Fabales &amp; Cucurbitales</name>
1967                                 <clade>
1968                                   <name>SOYBN</name>
1969                                   <taxonomy>
1970                                     <id provider="uniprot">3847</id>
1971                                     <code>SOYBN</code>
1972                                     <scientific_name>Glycine max</scientific_name>
1973                                     <authority>cv. Wye</authority>
1974                                     <common_name>Soybean</common_name>
1975                                     <synonym>Glycine hispida</synonym>
1976                                     <rank>species</rank>
1977                                   </taxonomy>
1978                                 </clade>
1979                                 <clade>
1980                                   <name>CUCSA</name>
1981                                   <taxonomy>
1982                                     <id provider="uniprot">3659</id>
1983                                     <code>CUCSA</code>
1984                                     <scientific_name>Cucumis sativus</scientific_name>
1985                                     <common_name>Cucumber</common_name>
1986                                     <rank>species</rank>
1987                                   </taxonomy>
1988                                 </clade>
1989                               </clade>
1990                             </clade>
1991                             <clade>
1992                               <taxonomy>
1993                                 <id provider="uniprot">3701</id>
1994                                 <scientific_name>Arabidopsis</scientific_name>
1995                                 <rank>genus</rank>
1996                               </taxonomy>
1997                               <clade>
1998                                 <name>ARATH</name>
1999                                 <taxonomy>
2000                                   <id provider="uniprot">3702</id>
2001                                   <code>ARATH</code>
2002                                   <scientific_name>Arabidopsis thaliana</scientific_name>
2003                                   <common_name>Mouse-ear cress</common_name>
2004                                   <rank>species</rank>
2005                                 </taxonomy>
2006                               </clade>
2007                               <clade>
2008                                 <name>ARALY</name>
2009                                 <taxonomy>
2010                                   <id provider="uniprot">59689</id>
2011                                   <code>ARALY</code>
2012                                   <scientific_name>Arabidopsis lyrata</scientific_name>
2013                                   <common_name>Lyre-leaved rock-cress</common_name>
2014                                   <rank>species</rank>
2015                                 </taxonomy>
2016                               </clade>
2017                             </clade>
2018                           </clade>
2019                           <clade>
2020                             <name>VITVI</name>
2021                             <taxonomy>
2022                               <id provider="eol">582304</id>
2023                               <code>VITVI</code>
2024                               <scientific_name>Vitis vinifera</scientific_name>
2025                               <common_name>Grape</common_name>
2026                               <rank>species</rank>
2027                             </taxonomy>
2028                           </clade>
2029                         </clade>
2030                         <clade>
2031                           <name>MIMGU</name>
2032                           <taxonomy>
2033                             <id provider="uniprot">4155</id>
2034                             <code>MIMGU</code>
2035                             <scientific_name>Mimulus guttatus</scientific_name>
2036                             <common_name>Yellow monkey flower</common_name>
2037                             <synonym>Yellow monkey flower</synonym>
2038                             <rank>species</rank>
2039                           </taxonomy>
2040                         </clade>
2041                       </clade>
2042                       <clade>
2043                         <taxonomy>
2044                           <id provider="uniprot">4479</id>
2045                           <scientific_name>Poaceae</scientific_name>
2046                           <rank>family</rank>
2047                         </taxonomy>
2048                         <clade>
2049                           <taxonomy>
2050                             <id provider="uniprot">359160</id>
2051                             <scientific_name>BEP clade</scientific_name>
2052                           </taxonomy>
2053                           <clade>
2054                             <taxonomy>
2055                               <id provider="uniprot">4527</id>
2056                               <scientific_name>Oryza</scientific_name>
2057                               <rank>genus</rank>
2058                             </taxonomy>
2059                             <clade>
2060                               <name>ORYSJ</name>
2061                               <taxonomy>
2062                                 <id provider="uniprot">39947</id>
2063                                 <code>ORYSJ</code>
2064                                 <scientific_name>Oryza sativa subsp. japonica</scientific_name>
2065                                 <common_name>Rice</common_name>
2066                               </taxonomy>
2067                             </clade>
2068                             <clade>
2069                               <name>ORYSA</name>
2070                               <taxonomy>
2071                                 <id provider="uniprot">4530</id>
2072                                 <code>ORYSA</code>
2073                                 <scientific_name>Oryza sativa</scientific_name>
2074                                 <common_name>Rice</common_name>
2075                                 <rank>species</rank>
2076                               </taxonomy>
2077                             </clade>
2078                           </clade>
2079                           <clade>
2080                             <name>BRADI</name>
2081                             <taxonomy>
2082                               <code>BRADI</code>
2083                               <scientific_name>Brachypodium distachyon</scientific_name>
2084                               <common_name>Purple false brome</common_name>
2085                               <synonym>Trachynia distachya</synonym>
2086                               <rank>species</rank>
2087                             </taxonomy>
2088                           </clade>
2089                         </clade>
2090                         <clade>
2091                           <name>SORBI</name>
2092                           <taxonomy>
2093                             <id provider="uniprot">4558</id>
2094                             <code>SORBI</code>
2095                             <scientific_name>Sorghum bicolor</scientific_name>
2096                             <common_name>Sorghum</common_name>
2097                             <synonym>Sorghum vulgare</synonym>
2098                             <rank>species</rank>
2099                           </taxonomy>
2100                         </clade>
2101                       </clade>
2102                     </clade>
2103                     <clade>
2104                       <name>SELMO</name>
2105                       <taxonomy>
2106                         <id provider="uniprot">34167</id>
2107                         <code>SELMO</code>
2108                         <scientific_name>Selaginella mollis</scientific_name>
2109                         <common_name>Moss</common_name>
2110                         <rank>species</rank>
2111                       </taxonomy>
2112                     </clade>
2113                   </clade>
2114                   <clade>
2115                     <name>PHYPA</name>
2116                     <taxonomy>
2117                       <id provider="uniprot">145481</id>
2118                       <code>PHYPA</code>
2119                       <scientific_name>Physcomitrella patens subsp. patens</scientific_name>
2120                       <common_name>Moss</common_name>
2121                       <rank>subspecies</rank>
2122                     </taxonomy>
2123                   </clade>
2124                 </clade>
2125                 <clade>
2126                   <taxonomy>
2127                     <id provider="uniprot">3041</id>
2128                     <scientific_name>Chlorophyta</scientific_name>
2129                     <rank>phylum</rank>
2130                   </taxonomy>
2131                   <clade>
2132                     <taxonomy>
2133                       <id provider="uniprot">13792</id>
2134                       <scientific_name>Mamiellales</scientific_name>
2135                       <rank>order</rank>
2136                     </taxonomy>
2137                     <clade>
2138                       <taxonomy>
2139                         <id provider="uniprot">70447</id>
2140                         <scientific_name>Ostreococcus</scientific_name>
2141                         <rank>genus</rank>
2142                       </taxonomy>
2143                       <clade>
2144                         <name>OSTLU</name>
2145                         <taxonomy>
2146                           <id provider="uniprot">436017</id>
2147                           <code>OSTLU</code>
2148                           <scientific_name>Ostreococcus lucimarinus (strain CCE9901)</scientific_name>
2149                         </taxonomy>
2150                       </clade>
2151                       <clade>
2152                         <name>OSTTA</name>
2153                         <taxonomy>
2154                           <id provider="uniprot">70448</id>
2155                           <code>OSTTA</code>
2156                           <scientific_name>Ostreococcus tauri</scientific_name>
2157                           <rank>species</rank>
2158                         </taxonomy>
2159                       </clade>
2160                       <clade>
2161                         <name>OSTRC</name>
2162                         <taxonomy>
2163                           <id provider="uniprot">385169</id>
2164                           <scientific_name>Ostreococcus sp. RCC809</scientific_name>
2165                           <rank>species</rank>
2166                         </taxonomy>
2167                       </clade>
2168                     </clade>
2169                     <clade>
2170                       <taxonomy>
2171                         <id provider="uniprot">38832</id>
2172                         <scientific_name>Micromonas</scientific_name>
2173                         <rank>genus</rank>
2174                       </taxonomy>
2175                       <clade>
2176                         <name>MICPC</name>
2177                         <taxonomy>
2178                           <id provider="uniprot">564608</id>
2179                           <code>MICPC</code>
2180                           <scientific_name>Micromonas pusilla (strain CCMP1545)</scientific_name>
2181                           <common_name>Picoplanktonic green alga</common_name>
2182                         </taxonomy>
2183                       </clade>
2184                       <clade>
2185                         <name>MICSR</name>
2186                         <taxonomy>
2187                           <id provider="uniprot">296587</id>
2188                           <code>MICSR</code>
2189                           <scientific_name>Micromonas sp. (strain RCC299 / NOUM17)</scientific_name>
2190                           <common_name>Picoplanktonic green alga</common_name>
2191                           <synonym>Micromonas sp. RCC299</synonym>
2192                           <rank>species</rank>
2193                         </taxonomy>
2194                       </clade>
2195                     </clade>
2196                   </clade>
2197                   <clade>
2198                     <name>Trebouxiophyceae_Chlorophyceae</name>
2199                     <clade>
2200                       <taxonomy>
2201                         <id provider="uniprot">3042</id>
2202                         <scientific_name>Chlamydomonadales</scientific_name>
2203                         <rank>order</rank>
2204                       </taxonomy>
2205                       <clade>
2206                         <name>CHLRE</name>
2207                         <taxonomy>
2208                           <id provider="uniprot">3055</id>
2209                           <code>CHLRE</code>
2210                           <scientific_name>Chlamydomonas reinhardtii</scientific_name>
2211                           <rank>species</rank>
2212                         </taxonomy>
2213                       </clade>
2214                       <clade>
2215                         <name>VOLCA</name>
2216                         <taxonomy>
2217                           <id provider="uniprot">3067</id>
2218                           <code>VOLCA</code>
2219                           <scientific_name>Volvox carteri</scientific_name>
2220                           <rank>species</rank>
2221                         </taxonomy>
2222                       </clade>
2223                     </clade>
2224                     <clade>
2225                       <taxonomy>
2226                         <id provider="uniprot">75966</id>
2227                         <scientific_name>Trebouxiophyceae</scientific_name>
2228                         <rank>class</rank>
2229                       </taxonomy>
2230                       <clade>
2231                         <name>CHLSP</name>
2232                         <taxonomy>
2233                           <id provider="uniprot">554065</id>
2234                           <scientific_name>Chlorella variabilis</scientific_name>
2235                           <synonym>Chlorella sp. NC64A</synonym>
2236                           <rank>species</rank>
2237                         </taxonomy>
2238                       </clade>
2239                       <clade>
2240                         <name>CHLVUL</name>
2241                         <taxonomy>
2242                           <id provider="uniprot">574566</id>
2243                           <scientific_name>Coccomyxa sp. C-169</scientific_name>
2244                           <synonym>Chlorella vulgaris C-169</synonym>
2245                           <rank>species</rank>
2246                         </taxonomy>
2247                       </clade>
2248                     </clade>
2249                   </clade>
2250                 </clade>
2251               </clade>
2252               <clade>
2253                 <name>CYAME</name>
2254                 <taxonomy>
2255                   <id provider="uniprot">45157</id>
2256                   <code>CYAME</code>
2257                   <scientific_name>Cyanidioschyzon merolae</scientific_name>
2258                   <common_name>Red alga</common_name>
2259                   <rank>species</rank>
2260                   <uri>http://merolae.biol.s.u-tokyo.ac.jp/</uri>
2261                 </taxonomy>
2262               </clade>
2263             </clade>
2264             <clade>
2265               <name>Chromalveolate</name>
2266               <reference doi="10.1073/pnas.0712248105">
2267               </reference>
2268               <clade>
2269                 <name>Heterokonta_Alveolata</name>
2270                 <clade>
2271                   <name>Alveolata</name>
2272                   <taxonomy>
2273                     <id provider="uniprot">33630</id>
2274                     <scientific_name>Alveolata</scientific_name>
2275                   </taxonomy>
2276                   <clade>
2277                     <taxonomy>
2278                       <id provider="uniprot">5794</id>
2279                       <scientific_name>Apicomplexa</scientific_name>
2280                       <rank>phylum</rank>
2281                     </taxonomy>
2282                     <clade>
2283                       <taxonomy>
2284                         <id provider="uniprot">422676</id>
2285                         <scientific_name>Aconoidasida</scientific_name>
2286                         <rank>class</rank>
2287                       </taxonomy>
2288                       <clade>
2289                         <taxonomy>
2290                           <id provider="uniprot">5820</id>
2291                           <scientific_name>Plasmodium</scientific_name>
2292                           <rank>genus</rank>
2293                         </taxonomy>
2294                         <clade>
2295                           <name>PLAFA</name>
2296                           <taxonomy>
2297                             <id provider="uniprot">5833</id>
2298                             <code>PLAFA</code>
2299                             <scientific_name>Plasmodium falciparum</scientific_name>
2300                             <rank>species</rank>
2301                           </taxonomy>
2302                         </clade>
2303                         <clade>
2304                           <name>PLAYO</name>
2305                           <taxonomy>
2306                             <id provider="uniprot">73239</id>
2307                             <code>PLAYO</code>
2308                             <scientific_name>Plasmodium yoelii yoelii</scientific_name>
2309                             <rank>subspecies</rank>
2310                           </taxonomy>
2311                         </clade>
2312                         <clade>
2313                           <name>PLACH</name>
2314                           <taxonomy>
2315                             <id provider="uniprot">5825</id>
2316                             <code>PLACH</code>
2317                             <scientific_name>Plasmodium chabaudi</scientific_name>
2318                             <rank>species</rank>
2319                           </taxonomy>
2320                         </clade>
2321                       </clade>
2322                       <clade>
2323                         <name>Theileria</name>
2324                         <taxonomy>
2325                           <id provider="uniprot">5873</id>
2326                           <scientific_name>Theileria</scientific_name>
2327                           <rank>genus</rank>
2328                         </taxonomy>
2329                         <clade>
2330                           <name>THEPA</name>
2331                           <taxonomy>
2332                             <id provider="uniprot">5875</id>
2333                             <code>THEPA</code>
2334                             <scientific_name>Theileria parva</scientific_name>
2335                             <rank>species</rank>
2336                           </taxonomy>
2337                         </clade>
2338                         <clade>
2339                           <name>THEAN</name>
2340                           <taxonomy>
2341                             <id provider="uniprot">5874</id>
2342                             <code>THEAN</code>
2343                             <scientific_name>Theileria annulata</scientific_name>
2344                             <rank>species</rank>
2345                           </taxonomy>
2346                         </clade>
2347                       </clade>
2348                     </clade>
2349                     <clade>
2350                       <taxonomy>
2351                         <id provider="uniprot">423054</id>
2352                         <scientific_name>Eimeriorina</scientific_name>
2353                         <rank>suborder</rank>
2354                       </taxonomy>
2355                       <clade>
2356                         <taxonomy>
2357                           <id provider="uniprot">5806</id>
2358                           <scientific_name>Cryptosporidium</scientific_name>
2359                           <rank>genus</rank>
2360                         </taxonomy>
2361                         <clade>
2362                           <name>CRYHO</name>
2363                           <taxonomy>
2364                             <id provider="uniprot">237895</id>
2365                             <code>CRYHO</code>
2366                             <scientific_name>Cryptosporidium hominis</scientific_name>
2367                             <rank>species</rank>
2368                           </taxonomy>
2369                         </clade>
2370                         <clade>
2371                           <name>CRYPV</name>
2372                           <taxonomy>
2373                             <id provider="uniprot">5807</id>
2374                             <code>CRYPV</code>
2375                             <scientific_name>Cryptosporidium parvum</scientific_name>
2376                             <rank>species</rank>
2377                           </taxonomy>
2378                         </clade>
2379                       </clade>
2380                       <clade>
2381                         <name>TOXGO</name>
2382                         <taxonomy>
2383                           <id provider="uniprot">5811</id>
2384                           <code>TOXGO</code>
2385                           <scientific_name>Toxoplasma gondii</scientific_name>
2386                           <rank>species</rank>
2387                         </taxonomy>
2388                       </clade>
2389                     </clade>
2390                   </clade>
2391                   <clade>
2392                     <taxonomy>
2393                       <id provider="uniprot">6020</id>
2394                       <scientific_name>Oligohymenophorea</scientific_name>
2395                       <rank>class</rank>
2396                     </taxonomy>
2397                     <clade>
2398                       <name>TETTH</name>
2399                       <taxonomy>
2400                         <id provider="uniprot">5911</id>
2401                         <code>TETTH</code>
2402                         <scientific_name>Tetrahymena thermophila</scientific_name>
2403                         <rank>species</rank>
2404                       </taxonomy>
2405                     </clade>
2406                     <clade>
2407                       <name>PARTE</name>
2408                       <taxonomy>
2409                         <id provider="uniprot">5888</id>
2410                         <code>PARTE</code>
2411                         <scientific_name>Paramecium tetraurelia</scientific_name>
2412                         <rank>species</rank>
2413                       </taxonomy>
2414                     </clade>
2415                   </clade>
2416                 </clade>
2417                 <clade>
2418                   <name>Heterokonta</name>
2419                   <taxonomy>
2420                     <id provider="uniprot">33634</id>
2421                     <scientific_name>stramenopiles</scientific_name>
2422                     <synonym>Chromophyta</synonym>
2423                   </taxonomy>
2424                   <clade>
2425                     <name>Pelagophyceae_Bacillariophyta</name>
2426                     <clade>
2427                       <taxonomy>
2428                         <id provider="uniprot">2836</id>
2429                         <scientific_name>Bacillariophyta</scientific_name>
2430                         <common_name>diatoms</common_name>
2431                         <rank>phylum</rank>
2432                       </taxonomy>
2433                       <clade>
2434                         <taxonomy>
2435                           <id provider="uniprot">33850</id>
2436                           <scientific_name>Bacillariophycidae</scientific_name>
2437                         </taxonomy>
2438                         <clade>
2439                           <name>PHATR</name>
2440                           <taxonomy>
2441                             <id provider="eol">912693</id>
2442                             <code>PHATR</code>
2443                             <scientific_name>Phaeodactylum tricornutum</scientific_name>
2444                             <authority>Bohlin</authority>
2445                             <rank>species</rank>
2446                           </taxonomy>
2447                         </clade>
2448                         <clade>
2449                           <name>FRACY</name>
2450                           <taxonomy>
2451                             <id provider="eol">911694</id>
2452                             <code>FRACY</code>
2453                             <scientific_name>Fragilariopsis cylindrus</scientific_name>
2454                             <authority>Krieger</authority>
2455                             <synonym>Nitzschia cylindrus</synonym>
2456                             <rank>species</rank>
2457                           </taxonomy>
2458                         </clade>
2459                       </clade>
2460                       <clade>
2461                         <name>THAPS</name>
2462                         <taxonomy>
2463                           <id provider="eol">916868</id>
2464                           <code>THAPS</code>
2465                           <scientific_name>Thalassiosira pseudonana</scientific_name>
2466                           <authority>Hasle &amp; Heimdal</authority>
2467                           <common_name>Marine diatom</common_name>
2468                           <rank>species</rank>
2469                         </taxonomy>
2470                       </clade>
2471                     </clade>
2472                     <clade>
2473                       <name>AURAN</name>
2474                       <taxonomy>
2475                         <id provider="eol">912461</id>
2476                         <code>AURAN</code>
2477                         <scientific_name>Aureococcus anophagefferens</scientific_name>
2478                         <authority>Hargraves &amp; Sieburth</authority>
2479                         <rank>species</rank>
2480                       </taxonomy>
2481                     </clade>
2482                   </clade>
2483                   <clade>
2484                     <taxonomy>
2485                       <id provider="uniprot">4783</id>
2486                       <scientific_name>Phytophthora</scientific_name>
2487                       <rank>genus</rank>
2488                     </taxonomy>
2489                     <clade>
2490                       <name>PHYIN</name>
2491                       <taxonomy>
2492                         <id provider="uniprot">4787</id>
2493                         <code>PHYIN</code>
2494                         <scientific_name>Phytophthora infestans</scientific_name>
2495                         <common_name>Potato late blight fungus</common_name>
2496                         <rank>species</rank>
2497                       </taxonomy>
2498                     </clade>
2499                     <clade>
2500                       <name>PHYRM</name>
2501                       <taxonomy>
2502                         <id provider="uniprot">164328</id>
2503                         <code>PHYRM</code>
2504                         <scientific_name>Phytophthora ramorum</scientific_name>
2505                         <common_name>Sudden oak death agent</common_name>
2506                         <rank>species</rank>
2507                       </taxonomy>
2508                     </clade>
2509                     <clade>
2510                       <name>PHYSO</name>
2511                       <taxonomy>
2512                         <id provider="uniprot">67593</id>
2513                         <scientific_name>Phytophthora sojae</scientific_name>
2514                         <rank>species</rank>
2515                       </taxonomy>
2516                     </clade>
2517                   </clade>
2518                 </clade>
2519               </clade>
2520               <clade>
2521                 <name>EMIHU</name>
2522                 <taxonomy>
2523                   <id provider="uniprot">2903</id>
2524                   <code>EMIHU</code>
2525                   <scientific_name>Emiliania huxleyi</scientific_name>
2526                   <rank>species</rank>
2527                 </taxonomy>
2528               </clade>
2529             </clade>
2530           </clade>
2531           <clade>
2532             <name>Excavata</name>
2533             <reference doi="10.1038/nature04546">
2534             </reference>
2535             <clade>
2536               <name>Kinetoplastida_Heterolobosea</name>
2537               <clade>
2538                 <taxonomy>
2539                   <id provider="uniprot">5654</id>
2540                   <scientific_name>Trypanosomatidae</scientific_name>
2541                   <rank>family</rank>
2542                 </taxonomy>
2543                 <clade>
2544                   <name>LEIMA</name>
2545                   <taxonomy>
2546                     <id provider="uniprot">5664</id>
2547                     <code>LEIMA</code>
2548                     <scientific_name>Leishmania major</scientific_name>
2549                     <rank>species</rank>
2550                   </taxonomy>
2551                 </clade>
2552                 <clade>
2553                   <name>TRYBB</name>
2554                   <taxonomy>
2555                     <id provider="uniprot">5702</id>
2556                     <code>TRYBB</code>
2557                     <scientific_name>Trypanosoma brucei brucei</scientific_name>
2558                     <rank>subspecies</rank>
2559                   </taxonomy>
2560                 </clade>
2561               </clade>
2562               <clade>
2563                 <name>NAEGR</name>
2564                 <taxonomy>
2565                   <id provider="uniprot">5762</id>
2566                   <code>NAEGR</code>
2567                   <scientific_name>Naegleria gruberi</scientific_name>
2568                   <common_name>Amoeba</common_name>
2569                   <rank>species</rank>
2570                 </taxonomy>
2571               </clade>
2572             </clade>
2573             <clade>
2574               <name>Metamonada</name>
2575               <clade>
2576                 <name>GIALA</name>
2577                 <taxonomy>
2578                   <id provider="uniprot">5741</id>
2579                   <code>GIALA</code>
2580                   <scientific_name>Giardia lamblia</scientific_name>
2581                   <synonym>Giardia intestinalis</synonym>
2582                   <synonym>Giardia lamblia</synonym>
2583                   <rank>species</rank>
2584                 </taxonomy>
2585               </clade>
2586               <clade>
2587                 <name>TRIVA</name>
2588                 <taxonomy>
2589                   <id provider="uniprot">5722</id>
2590                   <code>TRIVA</code>
2591                   <scientific_name>Trichomonas vaginalis</scientific_name>
2592                   <rank>species</rank>
2593                 </taxonomy>
2594               </clade>
2595             </clade>
2596           </clade>
2597         </clade>
2598       </clade>
2599       <clade>
2600         <name>Archaea</name>
2601         <clade>
2602           <name>a_62</name>
2603           <clade>
2604             <name>a_56</name>
2605             <clade>
2606               <name>a_52</name>
2607               <clade>
2608                 <name>a_44</name>
2609                 <clade>
2610                   <name>a_28</name>
2611                   <clade>
2612                     <name>a_26</name>
2613                     <clade>
2614                       <name>a_16</name>
2615                       <clade>
2616                         <name>a_14</name>
2617                         <clade>
2618                           <name>a_12</name>
2619                           <clade>
2620                             <name>a_6</name>
2621                             <clade>
2622                               <name>a_4</name>
2623                               <clade>
2624                                 <name>a_2</name>
2625                                 <clade>
2626                                   <name>METAC</name>
2627                                   <taxonomy>
2628                                     <id provider="uniprot">2214</id>
2629                                     <code>METAC</code>
2630                                     <scientific_name>Methanosarcina acetivorans</scientific_name>
2631                                     <rank>species</rank>
2632                                   </taxonomy>
2633                                 </clade>
2634                                 <clade>
2635                                   <name>METBF</name>
2636                                   <taxonomy>
2637                                     <id provider="uniprot">269797</id>
2638                                     <code>METBF</code>
2639                                     <scientific_name>Methanosarcina barkeri (strain Fusaro / DSM 804)</scientific_name>
2640                                   </taxonomy>
2641                                 </clade>
2642                               </clade>
2643                               <clade>
2644                                 <name>METMA</name>
2645                                 <taxonomy>
2646                                   <id provider="uniprot">2209</id>
2647                                   <code>METMA</code>
2648                                   <scientific_name>Methanosarcina mazei</scientific_name>
2649                                   <synonym>Methanosarcina frisia</synonym>
2650                                   <rank>species</rank>
2651                                 </taxonomy>
2652                               </clade>
2653                             </clade>
2654                             <clade>
2655                               <name>METBU</name>
2656                               <taxonomy>
2657                                 <id provider="uniprot">259564</id>
2658                                 <code>METBU</code>
2659                                 <scientific_name>Methanococcoides burtonii (strain DSM 6242)</scientific_name>
2660                               </taxonomy>
2661                             </clade>
2662                           </clade>
2663                           <clade>
2664                             <name>a_11</name>
2665                             <clade>
2666                               <name>a_9</name>
2667                               <clade>
2668                                 <name>METHU</name>
2669                                 <taxonomy>
2670                                   <id provider="uniprot">2203</id>
2671                                   <code>METHU</code>
2672                                   <scientific_name>Methanospirillum hungatei</scientific_name>
2673                                   <rank>species</rank>
2674                                 </taxonomy>
2675                               </clade>
2676                               <clade>
2677                                 <name>METB6</name>
2678                                 <taxonomy>
2679                                   <id provider="uniprot">456442</id>
2680                                   <code>METB6</code>
2681                                   <scientific_name>Methanoregula boonei (strain 6A8)</scientific_name>
2682                                 </taxonomy>
2683                               </clade>
2684                             </clade>
2685                             <clade>
2686                               <name>METMJ</name>
2687                               <taxonomy>
2688                                 <id provider="uniprot">368407</id>
2689                                 <code>METMJ</code>
2690                                 <scientific_name>Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1)</scientific_name>
2691                               </taxonomy>
2692                             </clade>
2693                           </clade>
2694                         </clade>
2695                         <clade>
2696                           <name>METLZ</name>
2697                           <taxonomy>
2698                             <id provider="uniprot">410358</id>
2699                             <code>METLZ</code>
2700                             <scientific_name>Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z)</scientific_name>
2701                           </taxonomy>
2702                         </clade>
2703                       </clade>
2704                       <clade>
2705                         <name>METTP</name>
2706                         <taxonomy>
2707                           <id provider="uniprot">349307</id>
2708                           <code>METTP</code>
2709                           <scientific_name>Methanosaeta thermophila (strain DSM 6194 / PT)</scientific_name>
2710                           <synonym>Methanothrix thermophila (strain DSM 6194 / PT)</synonym>
2711                         </taxonomy>
2712                       </clade>
2713                     </clade>
2714                     <clade>
2715                       <name>a_25</name>
2716                       <clade>
2717                         <name>a_23</name>
2718                         <clade>
2719                           <name>a_19</name>
2720                           <clade>
2721                             <name>NATPH</name>
2722                             <taxonomy>
2723                               <id provider="uniprot">2257</id>
2724                               <code>NATPH</code>
2725                               <scientific_name>Natronomonas pharaonis</scientific_name>
2726                               <common_name>Natronobacterium pharaonis</common_name>
2727                               <rank>species</rank>
2728                             </taxonomy>
2729                           </clade>
2730                           <clade>
2731                             <name>HALMA</name>
2732                             <taxonomy>
2733                               <id provider="uniprot">2238</id>
2734                               <code>HALMA</code>
2735                               <scientific_name>Haloarcula marismortui</scientific_name>
2736                               <synonym>Halobacterium marismortui</synonym>
2737                               <rank>species</rank>
2738                             </taxonomy>
2739                           </clade>
2740                         </clade>
2741                         <clade>
2742                           <name>a_22</name>
2743                           <clade>
2744                             <name>HALSP</name>
2745                             <taxonomy>
2746                               <id provider="uniprot">2243</id>
2747                               <code>HALSP</code>
2748                               <scientific_name>Halobacterium sp.</scientific_name>
2749                               <rank>species</rank>
2750                             </taxonomy>
2751                           </clade>
2752                           <clade>
2753                             <name>HALS3</name>
2754                             <taxonomy>
2755                               <id provider="uniprot">478009</id>
2756                               <code>HALS3</code>
2757                               <scientific_name>Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1)</scientific_name>
2758                             </taxonomy>
2759                           </clade>
2760                         </clade>
2761                       </clade>
2762                       <clade>
2763                         <name>HALWD</name>
2764                         <taxonomy>
2765                           <id provider="uniprot">362976</id>
2766                           <code>HALWD</code>
2767                           <scientific_name>Haloquadratum walsbyi (strain DSM 16790)</scientific_name>
2768                         </taxonomy>
2769                       </clade>
2770                     </clade>
2771                   </clade>
2772                   <clade>
2773                     <name>ARCFU</name>
2774                     <taxonomy>
2775                       <id provider="uniprot">2234</id>
2776                       <code>ARCFU</code>
2777                       <scientific_name>Archaeoglobus fulgidus</scientific_name>
2778                       <rank>species</rank>
2779                     </taxonomy>
2780                   </clade>
2781                 </clade>
2782                 <clade>
2783                   <name>a_43</name>
2784                   <clade>
2785                     <name>a_41</name>
2786                     <clade>
2787                       <name>a_35</name>
2788                       <clade>
2789                         <name>a_31</name>
2790                         <clade>
2791                           <name>METJA</name>
2792                           <taxonomy>
2793                             <id provider="uniprot">2190</id>
2794                             <code>METJA</code>
2795                             <scientific_name>Methanocaldococcus jannaschii</scientific_name>
2796                             <synonym>Methanococcus jannaschii</synonym>
2797                             <rank>species</rank>
2798                           </taxonomy>
2799                         </clade>
2800                         <clade>
2801                           <name>META3</name>
2802                           <taxonomy>
2803                             <id provider="uniprot">419665</id>
2804                             <code>META3</code>
2805                             <scientific_name>Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280)</scientific_name>
2806                           </taxonomy>
2807                         </clade>
2808                       </clade>
2809                       <clade>
2810                         <name>a_34</name>
2811                         <clade>
2812                           <name>METMP</name>
2813                           <taxonomy>
2814                             <id provider="uniprot">39152</id>
2815                             <code>METMP</code>
2816                             <scientific_name>Methanococcus maripaludis</scientific_name>
2817                             <rank>species</rank>
2818                           </taxonomy>
2819                         </clade>
2820                         <clade>
2821                           <name>METVS</name>
2822                           <taxonomy>
2823                             <id provider="uniprot">406327</id>
2824                             <code>METVS</code>
2825                             <scientific_name>Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224)</scientific_name>
2826                           </taxonomy>
2827                         </clade>
2828                       </clade>
2829                     </clade>
2830                     <clade>
2831                       <name>a_40</name>
2832                       <clade>
2833                         <name>a_38</name>
2834                         <clade>
2835                           <name>METST</name>
2836                           <taxonomy>
2837                             <id provider="uniprot">339860</id>
2838                             <code>METST</code>
2839                             <scientific_name>Methanosphaera stadtmanae (strain DSM 3091)</scientific_name>
2840                           </taxonomy>
2841                         </clade>
2842                         <clade>
2843                           <name>METS3</name>
2844                           <taxonomy>
2845                             <id provider="uniprot">420247</id>
2846                             <code>METS3</code>
2847                             <scientific_name>Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861)</scientific_name>
2848                           </taxonomy>
2849                         </clade>
2850                       </clade>
2851                       <clade>
2852                         <name>METTH</name>
2853                         <taxonomy>
2854                           <id provider="uniprot">187420</id>
2855                           <code>METTH</code>
2856                           <scientific_name>Methanobacterium thermoautotrophicum</scientific_name>
2857                         </taxonomy>
2858                       </clade>
2859                     </clade>
2860                   </clade>
2861                   <clade>
2862                     <name>METKA</name>
2863                     <taxonomy>
2864                       <id provider="uniprot">2320</id>
2865                       <code>METKA</code>
2866                       <scientific_name>Methanopyrus kandleri</scientific_name>
2867                       <rank>species</rank>
2868                     </taxonomy>
2869                   </clade>
2870                 </clade>
2871               </clade>
2872               <clade>
2873                 <name>a_51</name>
2874                 <clade>
2875                   <name>a_47</name>
2876                   <clade>
2877                     <name>PYRFU</name>
2878                     <taxonomy>
2879                       <id provider="uniprot">2261</id>
2880                       <code>PYRFU</code>
2881                       <scientific_name>Pyrococcus furiosus</scientific_name>
2882                       <rank>species</rank>
2883                     </taxonomy>
2884                   </clade>
2885                   <clade>
2886                     <name>THEKO</name>
2887                     <taxonomy>
2888                       <code>THEKO</code>
2889                     </taxonomy>
2890                   </clade>
2891                 </clade>
2892                 <clade>
2893                   <name>a_50</name>
2894                   <clade>
2895                     <name>PYRAB</name>
2896                     <taxonomy>
2897                       <id provider="uniprot">29292</id>
2898                       <code>PYRAB</code>
2899                       <scientific_name>Pyrococcus abyssi</scientific_name>
2900                       <rank>species</rank>
2901                     </taxonomy>
2902                   </clade>
2903                   <clade>
2904                     <name>PYRHO</name>
2905                     <taxonomy>
2906                       <id provider="uniprot">53953</id>
2907                       <code>PYRHO</code>
2908                       <scientific_name>Pyrococcus horikoshii</scientific_name>
2909                       <rank>species</rank>
2910                     </taxonomy>
2911                   </clade>
2912                 </clade>
2913               </clade>
2914             </clade>
2915             <clade>
2916               <name>a_55</name>
2917               <clade>
2918                 <name>NITMA</name>
2919                 <taxonomy>
2920                   <code>NITMA</code>
2921                 </taxonomy>
2922               </clade>
2923               <clade>
2924                 <name>NANEQ</name>
2925                 <taxonomy>
2926                   <id provider="uniprot">228908</id>
2927                   <code>NANEQ</code>
2928                   <scientific_name>Nanoarchaeum equitans (strain Kin4-M)</scientific_name>
2929                 </taxonomy>
2930               </clade>
2931             </clade>
2932           </clade>
2933           <clade>
2934             <name>a_61</name>
2935             <clade>
2936               <name>a_59</name>
2937               <clade>
2938                 <name>THEVO</name>
2939                 <taxonomy>
2940                   <id provider="uniprot">273116</id>
2941                   <code>THEVO</code>
2942                   <scientific_name>Thermoplasma volcanium (strain ATCC 51530 / DSM 4299 / IFO 15438 / JCM 9571 / GSS1)</scientific_name>
2943                 </taxonomy>
2944               </clade>
2945               <clade>
2946                 <name>THEAC</name>
2947                 <taxonomy>
2948                   <id provider="uniprot">273075</id>
2949                   <code>THEAC</code>
2950                   <scientific_name>Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)</scientific_name>
2951                 </taxonomy>
2952               </clade>
2953             </clade>
2954             <clade>
2955               <name>PICTO</name>
2956               <taxonomy>
2957                 <id provider="uniprot">263820</id>
2958                 <code>PICTO</code>
2959                 <scientific_name>Picrophilus torridus (strain ATCC 700027 / DSM 9790 / JCM 10055 / NBRC 100828)</scientific_name>
2960               </taxonomy>
2961             </clade>
2962           </clade>
2963         </clade>
2964         <clade>
2965           <name>a_93</name>
2966           <clade>
2967             <name>a_91</name>
2968             <clade>
2969               <name>a_83</name>
2970               <clade>
2971                 <name>a_81</name>
2972                 <clade>
2973                   <name>a_73</name>
2974                   <clade>
2975                     <name>a_71</name>
2976                     <clade>
2977                       <name>a_67</name>
2978                       <clade>
2979                         <name>a_65</name>
2980                         <clade>
2981                           <name>PYRAR</name>
2982                           <taxonomy>
2983                             <id provider="uniprot">340102</id>
2984                             <code>PYRAR</code>
2985                             <scientific_name>Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321)</scientific_name>
2986                           </taxonomy>
2987                         </clade>
2988                         <clade>
2989                           <name>PYRCJ</name>
2990                           <taxonomy>
2991                             <id provider="uniprot">410359</id>
2992                             <code>PYRCJ</code>
2993                             <scientific_name>Pyrobaculum calidifontis (strain JCM 11548 / VA1)</scientific_name>
2994                           </taxonomy>
2995                         </clade>
2996                       </clade>
2997                       <clade>
2998                         <name>PYRAE</name>
2999                         <taxonomy>
3000                           <id provider="uniprot">13773</id>
3001                           <code>PYRAE</code>
3002                           <scientific_name>Pyrobaculum aerophilum</scientific_name>
3003                           <rank>species</rank>
3004                         </taxonomy>
3005                       </clade>
3006                     </clade>
3007                     <clade>
3008                       <name>a_70</name>
3009                       <clade>
3010                         <name>PYRIL</name>
3011                         <taxonomy>
3012                           <id provider="uniprot">384616</id>
3013                           <code>PYRIL</code>
3014                           <scientific_name>Pyrobaculum islandicum (strain DSM 4184 / JCM 9189)</scientific_name>
3015                         </taxonomy>
3016                       </clade>
3017                       <clade>
3018                         <name>THENV</name>
3019                         <taxonomy>
3020                           <id provider="uniprot">444157</id>
3021                           <code>THENV</code>
3022                           <scientific_name>Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta)</scientific_name>
3023                         </taxonomy>
3024                       </clade>
3025                     </clade>
3026                   </clade>
3027                   <clade>
3028                     <name>CALMA</name>
3029                     <taxonomy>
3030                       <id provider="uniprot">28682</id>
3031                       <code>CALMA</code>
3032                       <scientific_name>Calidris maritima</scientific_name>
3033                       <common_name>Purple sandpiper</common_name>
3034                       <synonym>Erolia maritima</synonym>
3035                       <rank>species</rank>
3036                     </taxonomy>
3037                   </clade>
3038                 </clade>
3039                 <clade>
3040                   <name>a_80</name>
3041                   <clade>
3042                     <name>a_78</name>
3043                     <clade>
3044                       <name>a_76</name>
3045                       <clade>
3046                         <name>SULTO</name>
3047                         <taxonomy>
3048                           <id provider="uniprot">273063</id>
3049                           <code>SULTO</code>
3050                           <scientific_name>Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)</scientific_name>
3051                         </taxonomy>
3052                       </clade>
3053                       <clade>
3054                         <name>SULAC</name>
3055                         <taxonomy>
3056                           <id provider="uniprot">2285</id>
3057                           <code>SULAC</code>
3058                           <scientific_name>Sulfolobus acidocaldarius</scientific_name>
3059                           <rank>species</rank>
3060                         </taxonomy>
3061                       </clade>
3062                     </clade>
3063                     <clade>
3064                       <name>SULSO</name>
3065                       <taxonomy>
3066                         <id provider="uniprot">2287</id>
3067                         <code>SULSO</code>
3068                         <scientific_name>Sulfolobus solfataricus</scientific_name>
3069                         <rank>species</rank>
3070                       </taxonomy>
3071                     </clade>
3072                   </clade>
3073                   <clade>
3074                     <name>METS5</name>
3075                     <taxonomy>
3076                       <id provider="uniprot">399549</id>
3077                       <code>METS5</code>
3078                       <scientific_name>Metallosphaera sedula (strain ATCC 51363 / DSM 5348)</scientific_name>
3079                     </taxonomy>
3080                   </clade>
3081                 </clade>
3082               </clade>
3083               <clade>
3084                 <name>AERPE</name>
3085                 <taxonomy>
3086                   <id provider="uniprot">56636</id>
3087                   <code>AERPE</code>
3088                   <scientific_name>Aeropyrum pernix</scientific_name>
3089                   <rank>species</rank>
3090                 </taxonomy>
3091               </clade>
3092             </clade>
3093             <clade>
3094               <name>a_90</name>
3095               <clade>
3096                 <name>a_88</name>
3097                 <clade>
3098                   <name>a_86</name>
3099                   <clade>
3100                     <name>STAMF</name>
3101                     <taxonomy>
3102                       <id provider="uniprot">399550</id>
3103                       <code>STAMF</code>
3104                       <scientific_name>Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1)</scientific_name>
3105                     </taxonomy>
3106                   </clade>
3107                   <clade>
3108                     <name>THEPD</name>
3109                     <taxonomy>
3110                       <id provider="uniprot">368408</id>
3111                       <code>THEPD</code>
3112                       <scientific_name>Thermofilum pendens (strain Hrk 5)</scientific_name>
3113                     </taxonomy>
3114                   </clade>
3115                 </clade>
3116                 <clade>
3117                   <name>HYPBU</name>
3118                   <taxonomy>
3119                     <id provider="uniprot">415426</id>
3120                     <code>HYPBU</code>
3121                     <scientific_name>Hyperthermus butylicus (strain DSM 5456 / JCM 9403)</scientific_name>
3122                   </taxonomy>
3123                 </clade>
3124               </clade>
3125               <clade>
3126                 <name>IGNH4</name>
3127                 <taxonomy>
3128                   <id provider="uniprot">453591</id>
3129                   <code>IGNH4</code>
3130                   <scientific_name>Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125)</scientific_name>
3131                 </taxonomy>
3132               </clade>
3133             </clade>
3134           </clade>
3135           <clade>
3136             <name>KORCR</name>
3137             <taxonomy>
3138               <code>KORCR</code>
3139             </taxonomy>
3140           </clade>
3141         </clade>
3142       </clade>
3143     </clade>
3144     <clade>
3145       <name>Bacteria</name>
3146       <clade>
3147         <name>b_278</name>
3148         <clade>
3149           <name>b_268</name>
3150           <clade>
3151             <name>b_226</name>
3152             <clade>
3153               <name>b_200</name>
3154               <clade>
3155                 <name>b_194</name>
3156                 <clade>
3157                   <name>b_104</name>
3158                   <clade>
3159                     <name>b_80</name>
3160                     <clade>
3161                       <name>b_72</name>
3162                       <clade>
3163                         <name>b_52</name>
3164                         <clade>
3165                           <name>b_44</name>
3166                           <clade>
3167                             <name>b_30</name>
3168                             <clade>
3169                               <name>b_24</name>
3170                               <clade>
3171                                 <name>b_16</name>
3172                                 <clade>
3173                                   <name>b_10</name>
3174                                   <clade>
3175                                     <name>b_8</name>
3176                                     <clade>
3177                                       <name>b_6</name>
3178                                       <clade>
3179                                         <name>b_4</name>
3180                                         <clade>
3181                                           <name>b_2</name>
3182                                           <clade>
3183                                             <name>ECOLI</name>
3184                                             <taxonomy>
3185                                               <id provider="uniprot">83333</id>
3186                                               <code>ECOLI</code>
3187                                               <scientific_name>Escherichia coli (strain K12)</scientific_name>
3188                                             </taxonomy>
3189                                           </clade>
3190                                           <clade>
3191                                             <name>ECO57</name>
3192                                             <taxonomy>
3193                                               <id provider="uniprot">83334</id>
3194                                               <code>ECO57</code>
3195                                               <scientific_name>Escherichia coli O157:H7</scientific_name>
3196                                             </taxonomy>
3197                                           </clade>
3198                                         </clade>
3199                                         <clade>
3200                                           <name>SHIFL</name>
3201                                           <taxonomy>
3202                                             <id provider="uniprot">623</id>
3203                                             <code>SHIFL</code>
3204                                             <scientific_name>Shigella flexneri</scientific_name>
3205                                             <rank>species</rank>
3206                                           </taxonomy>
3207                                         </clade>
3208                                       </clade>
3209                                       <clade>
3210                                         <name>SALTY</name>
3211                                         <taxonomy>
3212                                           <id provider="uniprot">90371</id>
3213                                           <code>SALTY</code>
3214                                           <scientific_name>Salmonella typhimurium</scientific_name>
3215                                         </taxonomy>
3216                                       </clade>
3217                                     </clade>
3218                                     <clade>
3219                                       <name>YERPE</name>
3220                                       <taxonomy>
3221                                         <id provider="uniprot">632</id>
3222                                         <code>YERPE</code>
3223                                         <scientific_name>Yersinia pestis</scientific_name>
3224                                         <rank>species</rank>
3225                                       </taxonomy>
3226                                     </clade>
3227                                   </clade>
3228                                   <clade>
3229                                     <name>PHOLU</name>
3230                                     <taxonomy>
3231                                       <id provider="uniprot">29488</id>
3232                                       <code>PHOLU</code>
3233                                       <scientific_name>Photorhabdus luminescens</scientific_name>
3234                                       <synonym>Xenorhabdus luminescens</synonym>
3235                                       <rank>species</rank>
3236                                     </taxonomy>
3237                                   </clade>
3238                                 </clade>
3239                                 <clade>
3240                                   <name>b_15</name>
3241                                   <clade>
3242                                     <name>b_13</name>
3243                                     <clade>
3244                                       <name>PHOPR</name>
3245                                       <taxonomy>
3246                                         <id provider="uniprot">74109</id>
3247                                         <code>PHOPR</code>
3248                                         <scientific_name>Photobacterium profundum</scientific_name>
3249                                         <synonym>Photobacterium sp. (strain SS9)</synonym>
3250                                         <rank>species</rank>
3251                                       </taxonomy>
3252                                     </clade>
3253                                     <clade>
3254                                       <name>VIBCH</name>
3255                                       <taxonomy>
3256                                         <id provider="uniprot">666</id>
3257                                         <code>VIBCH</code>
3258                                         <scientific_name>Vibrio cholerae</scientific_name>
3259                                         <rank>species</rank>
3260                                       </taxonomy>
3261                                     </clade>
3262                                   </clade>
3263                                   <clade>
3264                                     <name>SHEDO</name>
3265                                     <taxonomy>
3266                                       <id provider="uniprot">318161</id>
3267                                       <code>SHEDO</code>
3268                                       <scientific_name>Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013)</scientific_name>
3269                                     </taxonomy>
3270                                   </clade>
3271                                 </clade>
3272                               </clade>
3273                               <clade>
3274                                 <name>b_23</name>
3275                                 <clade>
3276                                   <name>b_21</name>
3277                                   <clade>
3278                                     <name>b_19</name>
3279                                     <clade>
3280                                       <name>PSEF5</name>
3281                                       <taxonomy>
3282                                         <id provider="uniprot">220664</id>
3283                                         <code>PSEF5</code>
3284                                         <scientific_name>Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477)</scientific_name>
3285                                       </taxonomy>
3286                                     </clade>
3287                                     <clade>
3288                                       <name>PSEPF</name>
3289                                       <taxonomy>
3290                                         <id provider="uniprot">205922</id>
3291                                         <code>PSEPF</code>
3292                                         <scientific_name>Pseudomonas fluorescens (strain Pf0-1)</scientific_name>
3293                                       </taxonomy>
3294                                     </clade>
3295                                   </clade>
3296                                   <clade>
3297                                     <name>PSEAE</name>
3298                                     <taxonomy>
3299                                       <id provider="uniprot">287</id>
3300                                       <code>PSEAE</code>
3301                                       <scientific_name>Pseudomonas aeruginosa</scientific_name>
3302                                       <rank>species</rank>
3303                                     </taxonomy>
3304                                   </clade>
3305                                 </clade>
3306                                 <clade>
3307                                   <name>CHRSD</name>
3308                                   <taxonomy>
3309                                     <id provider="uniprot">290398</id>
3310                                     <code>CHRSD</code>
3311                                     <scientific_name>Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768)</scientific_name>
3312                                   </taxonomy>
3313                                 </clade>
3314                               </clade>
3315                             </clade>
3316                             <clade>
3317                               <name>b_29</name>
3318                               <clade>
3319                                 <name>b_27</name>
3320                                 <clade>
3321                                   <name>RALME</name>
3322                                   <taxonomy>
3323                                     <id provider="uniprot">266264</id>
3324                                     <code>RALME</code>
3325                                     <scientific_name>Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839)</scientific_name>
3326                                   </taxonomy>
3327                                 </clade>
3328                                 <clade>
3329                                   <name>RHOFT</name>
3330                                   <taxonomy>
3331                                     <code>RHOFT</code>
3332                                   </taxonomy>
3333                                 </clade>
3334                               </clade>
3335                               <clade>
3336                                 <name>DECAR</name>
3337                                 <taxonomy>
3338                                   <id provider="uniprot">159087</id>
3339                                   <code>DECAR</code>
3340                                   <scientific_name>Dechloromonas aromatica (strain RCB)</scientific_name>
3341                                 </taxonomy>
3342                               </clade>
3343                             </clade>
3344                           </clade>
3345                           <clade>
3346                             <name>b_43</name>
3347                             <clade>
3348                               <name>b_41</name>
3349                               <clade>
3350                                 <name>b_35</name>
3351                                 <clade>
3352                                   <name>b_33</name>
3353                                   <clade>
3354                                     <name>NITMU</name>
3355                                     <taxonomy>
3356                                       <id provider="uniprot">323848</id>
3357                                       <code>NITMU</code>
3358                                       <scientific_name>Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849)</scientific_name>
3359                                     </taxonomy>
3360                                   </clade>
3361                                   <clade>
3362                                     <name>NITEU</name>
3363                                     <taxonomy>
3364                                       <id provider="uniprot">915</id>
3365                                       <code>NITEU</code>
3366                                       <scientific_name>Nitrosomonas europaea</scientific_name>
3367                                       <rank>species</rank>
3368                                     </taxonomy>
3369                                   </clade>
3370                                 </clade>
3371                                 <clade>
3372                                   <name>THIDE</name>
3373                                   <taxonomy>
3374                                     <id provider="uniprot">36861</id>
3375                                     <code>THIDE</code>
3376                                     <scientific_name>Thiobacillus denitrificans</scientific_name>
3377                                     <rank>species</rank>
3378                                   </taxonomy>
3379                                 </clade>
3380                               </clade>
3381                               <clade>
3382                                 <name>b_40</name>
3383                                 <clade>
3384                                   <name>b_38</name>
3385                                   <clade>
3386                                     <name>ALHEH</name>
3387                                     <taxonomy>
3388                                       <id provider="uniprot">187272</id>
3389                                       <code>ALHEH</code>
3390                                       <scientific_name>Alkalilimnicola ehrlichei (strain MLHE-1)</scientific_name>
3391                                     </taxonomy>
3392                                   </clade>
3393                                   <clade>
3394                                     <name>HALHL</name>
3395                                     <taxonomy>
3396                                       <id provider="uniprot">349124</id>
3397                                       <code>HALHL</code>
3398                                       <scientific_name>Halorhodospira halophila (strain DSM 244 / SL1)</scientific_name>
3399                                       <synonym>Ectothiorhodospira halophila (strain DSM 244 / SL1)</synonym>
3400                                     </taxonomy>
3401                                   </clade>
3402                                 </clade>
3403                                 <clade>
3404                                   <name>NITOC</name>
3405                                   <taxonomy>
3406                                     <id provider="uniprot">323261</id>
3407                                     <code>NITOC</code>
3408                                     <scientific_name>Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848)</scientific_name>
3409                                   </taxonomy>
3410                                 </clade>
3411                               </clade>
3412                             </clade>
3413                             <clade>
3414                               <name>THICR</name>
3415                               <taxonomy>
3416                                 <id provider="uniprot">317025</id>
3417                                 <code>THICR</code>
3418                                 <scientific_name>Thiomicrospira crunogena (strain XCL-2)</scientific_name>
3419                               </taxonomy>
3420                             </clade>
3421                           </clade>
3422                         </clade>
3423                         <clade>
3424                           <name>b_51</name>
3425                           <clade>
3426                             <name>b_47</name>
3427                             <clade>
3428                               <name>LEGPN</name>
3429                               <taxonomy>
3430                                 <id provider="uniprot">446</id>
3431                                 <code>LEGPN</code>
3432                                 <scientific_name>Legionella pneumophila</scientific_name>
3433                                 <rank>species</rank>
3434                               </taxonomy>
3435                             </clade>
3436                             <clade>
3437                               <name>IDILO</name>
3438                               <taxonomy>
3439                                 <id provider="uniprot">135577</id>
3440                                 <code>IDILO</code>
3441                                 <scientific_name>Idiomarina loihiensis</scientific_name>
3442                                 <rank>species</rank>
3443                               </taxonomy>
3444                             </clade>
3445                           </clade>
3446                           <clade>
3447                             <name>b_50</name>
3448                             <clade>
3449                               <name>XANAC</name>
3450                               <taxonomy>
3451                                 <id provider="uniprot">92829</id>
3452                                 <code>XANAC</code>
3453                                 <scientific_name>Xanthomonas axonopodis pv. citri</scientific_name>
3454                                 <common_name>Citrus canker</common_name>
3455                               </taxonomy>
3456                             </clade>
3457                             <clade>
3458                               <name>XYLFT</name>
3459                               <taxonomy>
3460                                 <id provider="uniprot">183190</id>
3461                                 <code>XYLFT</code>
3462                                 <scientific_name>Xylella fastidiosa (strain Temecula1 / ATCC 700964)</scientific_name>
3463                               </taxonomy>
3464                             </clade>
3465                           </clade>
3466                         </clade>
3467                       </clade>
3468                       <clade>
3469                         <name>b_71</name>
3470                         <clade>
3471                           <name>b_67</name>
3472                           <clade>
3473                             <name>b_65</name>
3474                             <clade>
3475                               <name>b_61</name>
3476                               <clade>
3477                                 <name>b_57</name>
3478                                 <clade>
3479                                   <name>b_55</name>
3480                                   <clade>
3481                                     <name>SINME</name>
3482                                     <taxonomy>
3483                                       <code>SINME</code>
3484                                     </taxonomy>
3485                                   </clade>
3486                                   <clade>
3487                                     <name>RHIEC</name>
3488                                     <taxonomy>
3489                                       <id provider="uniprot">347834</id>
3490                                       <code>RHIEC</code>
3491                                       <scientific_name>Rhizobium etli (strain CFN 42 / ATCC 51251)</scientific_name>
3492                                     </taxonomy>
3493                                   </clade>
3494                                 </clade>
3495                                 <clade>
3496                                   <name>AGRT5</name>
3497                                   <taxonomy>
3498                                     <id provider="uniprot">176299</id>
3499                                     <code>AGRT5</code>
3500                                     <scientific_name>Agrobacterium tumefaciens (strain C58 / ATCC 33970)</scientific_name>
3501                                   </taxonomy>
3502                                 </clade>
3503                               </clade>
3504                               <clade>
3505                                 <name>b_60</name>
3506                                 <clade>
3507                                   <name>BRAJA</name>
3508                                   <taxonomy>
3509                                     <id provider="uniprot">375</id>
3510                                     <code>BRAJA</code>
3511                                     <scientific_name>Bradyrhizobium japonicum</scientific_name>
3512                                     <rank>species</rank>
3513                                   </taxonomy>
3514                                 </clade>
3515                                 <clade>
3516                                   <name>RHOPT</name>
3517                                   <taxonomy>
3518                                     <id provider="uniprot">395960</id>
3519                                     <code>RHOPT</code>
3520                                     <scientific_name>Rhodopseudomonas palustris (strain TIE-1)</scientific_name>
3521                                   </taxonomy>
3522                                 </clade>
3523                               </clade>
3524                             </clade>
3525                             <clade>
3526                               <name>b_64</name>
3527                               <clade>
3528                                 <name>ROSDO</name>
3529                                 <taxonomy>
3530                                   <id provider="uniprot">375451</id>
3531                                   <code>ROSDO</code>
3532                                   <scientific_name>Roseobacter denitrificans (strain ATCC 33942 / OCh 114)</scientific_name>
3533                                   <common_name>Erythrobacter sp. (strain OCh 114)</common_name>
3534                                   <synonym>Roseobacter denitrificans</synonym>
3535                                 </taxonomy>
3536                               </clade>
3537                               <clade>
3538                                 <name>RHOS1</name>
3539                                 <taxonomy>
3540                                   <id provider="uniprot">349101</id>
3541                                   <code>RHOS1</code>
3542                                   <scientific_name>Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9)</scientific_name>
3543                                 </taxonomy>
3544                               </clade>
3545                             </clade>
3546                           </clade>
3547                           <clade>
3548                             <name>CAUCR</name>
3549                             <taxonomy>
3550                               <id provider="uniprot">155892</id>
3551                               <code>CAUCR</code>
3552                               <scientific_name>Caulobacter crescentus</scientific_name>
3553                               <synonym>Caulobacter vibrioides</synonym>
3554                               <rank>species</rank>
3555                             </taxonomy>
3556                           </clade>
3557                         </clade>
3558                         <clade>
3559                           <name>b_70</name>
3560                           <clade>
3561                             <name>RHORU</name>
3562                             <taxonomy>
3563                               <id provider="uniprot">1085</id>
3564                               <code>RHORU</code>
3565                               <scientific_name>Rhodospirillum rubrum</scientific_name>
3566                               <rank>species</rank>
3567                             </taxonomy>
3568                           </clade>
3569                           <clade>
3570                             <name>ACICY</name>
3571                             <taxonomy>
3572                               <id provider="uniprot">524</id>
3573                               <code>ACICY</code>
3574                               <scientific_name>Acidiphilium cryptum</scientific_name>
3575                               <rank>species</rank>
3576                             </taxonomy>
3577                           </clade>
3578                         </clade>
3579                       </clade>
3580                     </clade>
3581                     <clade>
3582                       <name>b_79</name>
3583                       <clade>
3584                         <name>b_77</name>
3585                         <clade>
3586                           <name>b_75</name>
3587                           <clade>
3588                             <name>PASMU</name>
3589                             <taxonomy>
3590                               <id provider="uniprot">747</id>
3591                               <code>PASMU</code>
3592                               <scientific_name>Pasteurella multocida</scientific_name>
3593                               <rank>species</rank>
3594                             </taxonomy>
3595                           </clade>
3596                           <clade>
3597                             <name>HAEIN</name>
3598                             <taxonomy>
3599                               <id provider="uniprot">727</id>
3600                               <code>HAEIN</code>
3601                               <scientific_name>Haemophilus influenzae</scientific_name>
3602                               <rank>species</rank>
3603                             </taxonomy>
3604                           </clade>
3605                         </clade>
3606                         <clade>
3607                           <name>NEIME</name>
3608                           <taxonomy>
3609                             <id provider="uniprot">487</id>
3610                             <code>NEIME</code>
3611                             <scientific_name>Neisseria meningitidis</scientific_name>
3612                             <rank>species</rank>
3613                           </taxonomy>
3614                         </clade>
3615                       </clade>
3616                       <clade>
3617                         <name>ACIFE</name>
3618                         <taxonomy>
3619                           <id provider="uniprot">905</id>
3620                           <code>ACIFE</code>
3621                           <scientific_name>Acidaminococcus fermentans</scientific_name>
3622                           <rank>species</rank>
3623                         </taxonomy>
3624                       </clade>
3625                     </clade>
3626                   </clade>
3627                   <clade>
3628                     <name>b_103</name>
3629                     <clade>
3630                       <name>b_91</name>
3631                       <clade>
3632                         <name>b_87</name>
3633                         <clade>
3634                           <name>b_83</name>
3635                           <clade>
3636                             <name>DESDE</name>
3637                             <taxonomy>
3638                               <id provider="uniprot">876</id>
3639                               <code>DESDE</code>
3640                               <scientific_name>Desulfovibrio desulfuricans</scientific_name>
3641                               <rank>species</rank>
3642                             </taxonomy>
3643                           </clade>
3644                           <clade>
3645                             <name>DESPS</name>
3646                             <taxonomy>
3647                               <id provider="uniprot">84980</id>
3648                               <code>DESPS</code>
3649                               <scientific_name>Desulfotalea psychrophila</scientific_name>
3650                               <rank>species</rank>
3651                             </taxonomy>
3652                           </clade>
3653                         </clade>
3654                         <clade>
3655                           <name>b_86</name>
3656                           <clade>
3657                             <name>SYNAS</name>
3658                             <taxonomy>
3659                               <id provider="uniprot">56780</id>
3660                               <code>SYNAS</code>
3661                               <scientific_name>Syntrophus aciditrophicus (strain SB)</scientific_name>
3662                             </taxonomy>
3663                           </clade>
3664                           <clade>
3665                             <name>DESOL</name>
3666                             <taxonomy>
3667                               <code>DESOL</code>
3668                             </taxonomy>
3669                           </clade>
3670                         </clade>
3671                       </clade>
3672                       <clade>
3673                         <name>b_90</name>
3674                         <clade>
3675                           <name>GEOME</name>
3676                           <taxonomy>
3677                             <id provider="uniprot">28232</id>
3678                             <code>GEOME</code>
3679                             <scientific_name>Geobacter metallireducens</scientific_name>
3680                             <rank>species</rank>
3681                           </taxonomy>
3682                         </clade>
3683                         <clade>
3684                           <name>GEOSL</name>
3685                           <taxonomy>
3686                             <id provider="uniprot">35554</id>
3687                             <code>GEOSL</code>
3688                             <scientific_name>Geobacter sulfurreducens</scientific_name>
3689                             <rank>species</rank>
3690                           </taxonomy>
3691                         </clade>
3692                       </clade>
3693                     </clade>
3694                     <clade>
3695                       <name>b_102</name>
3696                       <clade>
3697                         <name>b_98</name>
3698                         <clade>
3699                           <name>b_94</name>
3700                           <clade>
3701                             <name>ANADE</name>
3702                             <taxonomy>
3703                               <id provider="uniprot">290397</id>
3704                               <code>ANADE</code>
3705                               <scientific_name>Anaeromyxobacter dehalogenans (strain 2CP-C)</scientific_name>
3706                             </taxonomy>
3707                           </clade>
3708                           <clade>
3709                             <name>MYXXA</name>
3710                             <taxonomy>
3711                               <id provider="uniprot">34</id>
3712                               <code>MYXXA</code>
3713                               <scientific_name>Myxococcus xanthus</scientific_name>
3714                               <rank>species</rank>
3715                             </taxonomy>
3716                           </clade>
3717                         </clade>
3718                         <clade>
3719                           <name>b_97</name>
3720                           <clade>
3721                             <name>SOLUS</name>
3722                             <taxonomy>
3723                               <id provider="uniprot">332163</id>
3724                               <code>SOLUS</code>
3725                               <scientific_name>Solibacter usitatus</scientific_name>
3726                               <rank>species</rank>
3727                             </taxonomy>
3728                           </clade>
3729                           <clade>
3730                             <name>ACIBL</name>
3731                             <taxonomy>
3732                               <id provider="uniprot">204669</id>
3733                               <code>ACIBL</code>
3734                               <scientific_name>Acidobacteria bacterium (strain Ellin345)</scientific_name>
3735                             </taxonomy>
3736                           </clade>
3737                         </clade>
3738                       </clade>
3739                       <clade>
3740                         <name>b_101</name>
3741                         <clade>
3742                           <name>RHOBA</name>
3743                           <taxonomy>
3744                             <id provider="uniprot">265606</id>
3745                             <code>RHOBA</code>
3746                             <scientific_name>Rhodopirellula baltica</scientific_name>
3747                             <rank>species</rank>
3748                           </taxonomy>
3749                         </clade>
3750                         <clade>
3751                           <name>OPITE</name>
3752                           <taxonomy>
3753                             <code>OPITE</code>
3754                           </taxonomy>
3755                         </clade>
3756                       </clade>
3757                     </clade>
3758                   </clade>
3759                 </clade>
3760                 <clade>
3761                   <name>b_193</name>
3762                   <clade>
3763                     <name>b_163</name>
3764                     <clade>
3765                       <name>b_133</name>
3766                       <clade>
3767                         <name>b_127</name>
3768                         <clade>
3769                           <name>b_119</name>
3770                           <clade>
3771                             <name>b_115</name>
3772                             <clade>
3773                               <name>b_113</name>
3774                               <clade>
3775                                 <name>b_111</name>
3776                                 <clade>
3777                                   <name>b_109</name>
3778                                   <clade>
3779                                     <name>b_107</name>
3780                                     <clade>
3781                                       <name>MYCTU</name>
3782                                       <taxonomy>
3783                                         <id provider="uniprot">1773</id>
3784                                         <code>MYCTU</code>
3785                                         <scientific_name>Mycobacterium tuberculosis</scientific_name>
3786                                         <rank>species</rank>
3787                                       </taxonomy>
3788                                     </clade>
3789                                     <clade>
3790                                       <name>MYCLE</name>
3791                                       <taxonomy>
3792                                         <id provider="uniprot">1769</id>
3793                                         <code>MYCLE</code>
3794                                         <scientific_name>Mycobacterium leprae</scientific_name>
3795                                         <rank>species</rank>
3796                                       </taxonomy>
3797                                     </clade>
3798                                   </clade>
3799                                   <clade>
3800                                     <name>RHOR1</name>
3801                                     <taxonomy>
3802                                       <code>RHOR1</code>
3803                                     </taxonomy>
3804                                   </clade>
3805                                 </clade>
3806                                 <clade>
3807                                   <name>STRCO</name>
3808                                   <taxonomy>
3809                                     <id provider="uniprot">1902</id>
3810                                     <code>STRCO</code>
3811                                     <scientific_name>Streptomyces coelicolor</scientific_name>
3812                                     <rank>species</rank>
3813                                   </taxonomy>
3814                                 </clade>
3815                               </clade>
3816                               <clade>
3817                                 <name>KINRD</name>
3818                                 <taxonomy>
3819                                   <id provider="uniprot">266940</id>
3820                                   <code>KINRD</code>
3821                                   <scientific_name>Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216)</scientific_name>
3822                                 </taxonomy>
3823                               </clade>
3824                             </clade>
3825                             <clade>
3826                               <name>THEFY</name>
3827                               <taxonomy>
3828                                 <id provider="uniprot">269800</id>
3829                                 <code>THEFY</code>
3830                                 <scientific_name>Thermobifida fusca (strain YX)</scientific_name>
3831                               </taxonomy>
3832                             </clade>
3833                           </clade>
3834                           <clade>
3835                             <name>b_118</name>
3836                             <clade>
3837                               <name>CORJK</name>
3838                               <taxonomy>
3839                                 <id provider="uniprot">306537</id>
3840                                 <code>CORJK</code>
3841                                 <scientific_name>Corynebacterium jeikeium (strain K411)</scientific_name>
3842                               </taxonomy>
3843                             </clade>
3844                             <clade>
3845                               <name>KOCRD</name>
3846                               <taxonomy>
3847                                 <id provider="uniprot">378753</id>
3848                                 <code>KOCRD</code>
3849                                 <scientific_name>Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201)</scientific_name>
3850                               </taxonomy>
3851                             </clade>
3852                           </clade>
3853                         </clade>
3854                         <clade>
3855                           <name>b_126</name>
3856                           <clade>
3857                             <name>b_124</name>
3858                             <clade>
3859                               <name>b_122</name>
3860                               <clade>
3861                                 <name>CHLAU</name>
3862                                 <taxonomy>
3863                                   <id provider="uniprot">1108</id>
3864                                   <code>CHLAU</code>
3865                                   <scientific_name>Chloroflexus aurantiacus</scientific_name>
3866                                   <rank>species</rank>
3867                                 </taxonomy>
3868                               </clade>
3869                               <clade>
3870                                 <name>ROSCA</name>
3871                                 <taxonomy>
3872                                   <id provider="uniprot">74638</id>
3873                                   <code>ROSCA</code>
3874                                   <scientific_name>Rosa carolina</scientific_name>
3875                                   <common_name>Pasture rose</common_name>
3876                                   <rank>species</rank>
3877                                 </taxonomy>
3878                               </clade>
3879                             </clade>
3880                             <clade>
3881                               <name>HERAU</name>
3882                               <taxonomy>
3883                                 <id provider="uniprot">65</id>
3884                                 <code>HERAU</code>
3885                                 <scientific_name>Herpetosiphon aurantiacus</scientific_name>
3886                                 <synonym>Herpetosiphon giganteus</synonym>
3887                                 <rank>species</rank>
3888                               </taxonomy>
3889                             </clade>
3890                           </clade>
3891                           <clade>
3892                             <name>RUBXD</name>
3893                             <taxonomy>
3894                               <id provider="uniprot">266117</id>
3895                               <code>RUBXD</code>
3896                               <scientific_name>Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129)</scientific_name>
3897                             </taxonomy>
3898                           </clade>
3899                         </clade>
3900                       </clade>
3901                       <clade>
3902                         <name>b_132</name>
3903                         <clade>
3904                           <name>b_130</name>
3905                           <clade>
3906                             <name>DEIRA</name>
3907                             <taxonomy>
3908                               <id provider="uniprot">1299</id>
3909                               <code>DEIRA</code>
3910                               <scientific_name>Deinococcus radiodurans</scientific_name>
3911                               <rank>species</rank>
3912                             </taxonomy>
3913                           </clade>
3914                           <clade>
3915                             <name>DEIGD</name>
3916                             <taxonomy>
3917                               <id provider="uniprot">319795</id>
3918                               <code>DEIGD</code>
3919                               <scientific_name>Deinococcus geothermalis (strain DSM 11300)</scientific_name>
3920                             </taxonomy>
3921                           </clade>
3922                         </clade>
3923                         <clade>
3924                           <name>THETH</name>
3925                           <taxonomy>
3926                             <id provider="uniprot">274</id>
3927                             <code>THETH</code>
3928                             <scientific_name>Thermus thermophilus</scientific_name>
3929                             <rank>species</rank>
3930                           </taxonomy>
3931                         </clade>
3932                       </clade>
3933                     </clade>
3934                     <clade>
3935                       <name>b_162</name>
3936                       <clade>
3937                         <name>b_154</name>
3938                         <clade>
3939                           <name>b_152</name>
3940                           <clade>
3941                             <name>b_146</name>
3942                             <clade>
3943                               <name>b_144</name>
3944                               <clade>
3945                                 <name>b_142</name>
3946                                 <clade>
3947                                   <name>b_140</name>
3948                                   <clade>
3949                                     <name>b_138</name>
3950                                     <clade>
3951                                       <name>b_136</name>
3952                                       <clade>
3953                                         <name>NOSS7</name>
3954                                         <taxonomy>
3955                                           <id provider="uniprot">28072</id>
3956                                           <code>NOSS7</code>
3957                                           <scientific_name>Nostoc sp. (strain PCC 7524)</scientific_name>
3958                                           <rank>species</rank>
3959                                         </taxonomy>
3960                                       </clade>
3961                                       <clade>
3962                                         <name>ANAVA</name>
3963                                         <taxonomy>
3964                                           <id provider="uniprot">1172</id>
3965                                           <code>ANAVA</code>
3966                                           <scientific_name>Anabaena variabilis</scientific_name>
3967                                           <rank>species</rank>
3968                                         </taxonomy>
3969                                       </clade>
3970                                     </clade>
3971                                     <clade>
3972                                       <name>NOSP7</name>
3973                                       <taxonomy>
3974                                         <id provider="uniprot">63737</id>
3975                                         <code>NOSP7</code>
3976                                         <scientific_name>Nostoc punctiforme (strain ATCC 29133 / PCC 73102)</scientific_name>
3977                                       </taxonomy>
3978                                     </clade>
3979                                   </clade>
3980                                   <clade>
3981                                     <name>CYAA2</name>
3982                                     <taxonomy>
3983                                       <code>CYAA2</code>
3984                                     </taxonomy>
3985                                   </clade>
3986                                 </clade>
3987                                 <clade>
3988                                   <name>ACAMR</name>
3989                                   <taxonomy>
3990                                     <id provider="uniprot">155978</id>
3991                                     <code>ACAMR</code>
3992                                     <scientific_name>Acaryochloris marina</scientific_name>
3993                                     <rank>species</rank>
3994                                   </taxonomy>
3995                                 </clade>
3996                               </clade>
3997                               <clade>
3998                                 <name>MICAN</name>
3999                                 <taxonomy>
4000                                   <id provider="uniprot">449447</id>
4001                                   <code>MICAN</code>
4002                                   <scientific_name>Microcystis aeruginosa (strain NIES-843)</scientific_name>
4003                                 </taxonomy>
4004                               </clade>
4005                             </clade>
4006                             <clade>
4007                               <name>TRIER</name>
4008                               <taxonomy>
4009                                 <id provider="uniprot">1206</id>
4010                                 <code>TRIER</code>
4011                                 <scientific_name>Trichodesmium erythraeum</scientific_name>
4012                                 <rank>species</rank>
4013                               </taxonomy>
4014                             </clade>
4015                           </clade>
4016                           <clade>
4017                             <name>b_151</name>
4018                             <clade>
4019                               <name>b_149</name>
4020                               <clade>
4021                                 <name>SYNEL</name>
4022                                 <taxonomy>
4023                                   <id provider="uniprot">32046</id>
4024                                   <code>SYNEL</code>
4025                                   <scientific_name>Synechococcus elongatus</scientific_name>
4026                                   <rank>species</rank>
4027                                 </taxonomy>
4028                               </clade>
4029                               <clade>
4030                                 <name>SYNY3</name>
4031                                 <taxonomy>
4032                                   <id provider="uniprot">1148</id>
4033                                   <code>SYNY3</code>
4034                                   <scientific_name>Synechocystis sp. (strain PCC 6803)</scientific_name>
4035                                   <rank>species</rank>
4036                                 </taxonomy>
4037                               </clade>
4038                             </clade>
4039                             <clade>
4040                               <name>THEEL</name>
4041                               <taxonomy>
4042                                 <code>THEEL</code>
4043                               </taxonomy>
4044                             </clade>
4045                           </clade>
4046                         </clade>
4047                         <clade>
4048                           <name>GLOVI</name>
4049                           <taxonomy>
4050                             <id provider="uniprot">33072</id>
4051                             <code>GLOVI</code>
4052                             <scientific_name>Gloeobacter violaceus</scientific_name>
4053                             <rank>species</rank>
4054                           </taxonomy>
4055                         </clade>
4056                       </clade>
4057                       <clade>
4058                         <name>b_161</name>
4059                         <clade>
4060                           <name>b_159</name>
4061                           <clade>
4062                             <name>b_157</name>
4063                             <clade>
4064                               <name>PROMA</name>
4065                               <taxonomy>
4066                                 <id provider="uniprot">1219</id>
4067                                 <code>PROMA</code>
4068                                 <scientific_name>Prochlorococcus marinus</scientific_name>
4069                                 <rank>species</rank>
4070                               </taxonomy>
4071                             </clade>
4072                             <clade>
4073                               <name>PROMP</name>
4074                               <taxonomy>
4075                                 <id provider="uniprot">59919</id>
4076                                 <code>PROMP</code>
4077                                 <scientific_name>Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4)</scientific_name>
4078                               </taxonomy>
4079                             </clade>
4080                           </clade>
4081                           <clade>
4082                             <name>PROMM</name>
4083                             <taxonomy>
4084                               <id provider="uniprot">74547</id>
4085                               <code>PROMM</code>
4086                               <scientific_name>Prochlorococcus marinus (strain MIT 9313)</scientific_name>
4087                             </taxonomy>
4088                           </clade>
4089                         </clade>
4090                         <clade>
4091                           <name>SYNS3</name>
4092                           <taxonomy>
4093                             <id provider="uniprot">64471</id>
4094                             <code>SYNS3</code>
4095                             <scientific_name>Synechococcus sp. (strain CC9311)</scientific_name>
4096                             <rank>species</rank>
4097                           </taxonomy>
4098                         </clade>
4099                       </clade>
4100                     </clade>
4101                   </clade>
4102                   <clade>
4103                     <name>b_192</name>
4104                     <clade>
4105                       <name>b_190</name>
4106                       <clade>
4107                         <name>b_178</name>
4108                         <clade>
4109                           <name>b_176</name>
4110                           <clade>
4111                             <name>b_170</name>
4112                             <clade>
4113                               <name>b_166</name>
4114                               <clade>
4115                                 <name>CHLPB</name>
4116                                 <taxonomy>
4117                                   <id provider="uniprot">331678</id>
4118                                   <code>CHLPB</code>
4119                                   <scientific_name>Chlorobium phaeobacteroides (strain BS1)</scientific_name>
4120                                 </taxonomy>
4121                               </clade>
4122                               <clade>
4123                                 <name>PROAE</name>
4124                                 <taxonomy>
4125                                   <id provider="uniprot">1102</id>
4126                                   <code>PROAE</code>
4127                                   <scientific_name>Prosthecochloris aestuarii</scientific_name>
4128                                   <rank>species</rank>
4129                                 </taxonomy>
4130                               </clade>
4131                             </clade>
4132                             <clade>
4133                               <name>b_169</name>
4134                               <clade>
4135                                 <name>PROVI</name>
4136                                 <taxonomy>
4137                                   <id provider="uniprot">290318</id>
4138                                   <code>PROVI</code>
4139                                   <scientific_name>Prosthecochloris vibrioformis (strain DSM 265)</scientific_name>
4140                                   <common_name>Chlorobium vibrioforme subsp. thiosulfatophilum (strain DSM 265)</common_name>
4141                                   <synonym>Chlorobium phaeovibrioides (strain DSM 265)</synonym>
4142                                 </taxonomy>
4143                               </clade>
4144                               <clade>
4145                                 <name>PELLU</name>
4146                                 <taxonomy>
4147                                   <id provider="uniprot">1100</id>
4148                                   <code>PELLU</code>
4149                                   <scientific_name>Pelodictyon luteolum</scientific_name>
4150                                   <rank>species</rank>
4151                                 </taxonomy>
4152                               </clade>
4153                             </clade>
4154                           </clade>
4155                           <clade>
4156                             <name>b_175</name>
4157                             <clade>
4158                               <name>b_173</name>
4159                               <clade>
4160                                 <name>CHLTE</name>
4161                                 <taxonomy>
4162                                   <id provider="uniprot">1097</id>
4163                                   <code>CHLTE</code>
4164                                   <scientific_name>Chlorobium tepidum</scientific_name>
4165                                   <rank>species</rank>
4166                                 </taxonomy>
4167                               </clade>
4168                               <clade>
4169                                 <name>CHLP8</name>
4170                                 <taxonomy>
4171                                   <id provider="uniprot">517417</id>
4172                                   <code>CHLP8</code>
4173                                   <scientific_name>Chlorobaculum parvum (strain NCIB 8327)</scientific_name>
4174                                   <synonym>Chlorobium vibrioforme subsp. thiosulfatophilum (strain DSM 263 / NCIB 8327)</synonym>
4175                                 </taxonomy>
4176                               </clade>
4177                             </clade>
4178                             <clade>
4179                               <name>CHLCH</name>
4180                               <taxonomy>
4181                                 <id provider="uniprot">340177</id>
4182                                 <code>CHLCH</code>
4183                                 <scientific_name>Chlorobium chlorochromatii (strain CaD3)</scientific_name>
4184                               </taxonomy>
4185                             </clade>
4186                           </clade>
4187                         </clade>
4188                         <clade>
4189                           <name>CHLTA</name>
4190                           <taxonomy>
4191                             <id provider="uniprot">315277</id>
4192                             <code>CHLTA</code>
4193                             <scientific_name>Chlamydia trachomatis serovar A (strain HAR-13 / ATCC VR-571B)</scientific_name>
4194                           </taxonomy>
4195                         </clade>
4196                       </clade>
4197                       <clade>
4198                         <name>b_189</name>
4199                         <clade>
4200                           <name>b_183</name>
4201                           <clade>
4202                             <name>b_181</name>
4203                             <clade>
4204                               <name>FLAJO</name>
4205                               <taxonomy>
4206                                 <id provider="uniprot">986</id>
4207                                 <code>FLAJO</code>
4208                                 <scientific_name>Flavobacterium johnsoniae</scientific_name>
4209                                 <synonym>Cytophaga johnsonae</synonym>
4210                                 <rank>species</rank>
4211                               </taxonomy>
4212                             </clade>
4213                             <clade>
4214                               <name>GRAFK</name>
4215                               <taxonomy>
4216                                 <id provider="uniprot">411154</id>
4217                                 <code>GRAFK</code>
4218                                 <scientific_name>Gramella forsetii (strain KT0803)</scientific_name>
4219                               </taxonomy>
4220                             </clade>
4221                           </clade>
4222                           <clade>
4223                             <name>CYTH3</name>
4224                             <taxonomy>
4225                               <id provider="uniprot">269798</id>
4226                               <code>CYTH3</code>
4227                               <scientific_name>Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469)</scientific_name>
4228                             </taxonomy>
4229                           </clade>
4230                         </clade>
4231                         <clade>
4232                           <name>b_188</name>
4233                           <clade>
4234                             <name>b_186</name>
4235                             <clade>
4236                               <name>BACFR</name>
4237                               <taxonomy>
4238                                 <id provider="uniprot">817</id>
4239                                 <code>BACFR</code>
4240                                 <scientific_name>Bacteroides fragilis</scientific_name>
4241                                 <rank>species</rank>
4242                               </taxonomy>
4243                             </clade>
4244                             <clade>
4245                               <name>BACTN</name>
4246                               <taxonomy>
4247                                 <id provider="uniprot">818</id>
4248                                 <code>BACTN</code>
4249                                 <scientific_name>Bacteroides thetaiotaomicron</scientific_name>
4250                                 <rank>species</rank>
4251                               </taxonomy>
4252                             </clade>
4253                           </clade>
4254                           <clade>
4255                             <name>PORGI</name>
4256                             <taxonomy>
4257                               <id provider="uniprot">837</id>
4258                               <code>PORGI</code>
4259                               <scientific_name>Porphyromonas gingivalis</scientific_name>
4260                               <synonym>Bacteroides gingivalis</synonym>
4261                               <rank>species</rank>
4262                             </taxonomy>
4263                           </clade>
4264                         </clade>
4265                       </clade>
4266                     </clade>
4267                     <clade>
4268                       <name>SALRD</name>
4269                       <taxonomy>
4270                         <id provider="uniprot">309807</id>
4271                         <code>SALRD</code>
4272                         <scientific_name>Salinibacter ruber (strain DSM 13855 / M31)</scientific_name>
4273                       </taxonomy>
4274                     </clade>
4275                   </clade>
4276                 </clade>
4277               </clade>
4278               <clade>
4279                 <name>b_199</name>
4280                 <clade>
4281                   <name>b_197</name>
4282                   <clade>
4283                     <name>METI4</name>
4284                     <taxonomy>
4285                       <id provider="uniprot">481448</id>
4286                       <code>METI4</code>
4287                       <scientific_name>Methylacidiphilum infernorum (isolate V4)</scientific_name>
4288                       <synonym>Methylokorus infernorum (strain V4)</synonym>
4289                     </taxonomy>
4290                   </clade>
4291                   <clade>
4292                     <name>AKKM8</name>
4293                     <taxonomy>
4294                       <id provider="uniprot">349741</id>
4295                       <code>AKKM8</code>
4296                       <scientific_name>Akkermansia muciniphila (strain ATCC BAA-835)</scientific_name>
4297                     </taxonomy>
4298                   </clade>
4299                 </clade>
4300                 <clade>
4301                   <name>LEPIC</name>
4302                   <taxonomy>
4303                     <id provider="uniprot">44275</id>
4304                     <code>LEPIC</code>
4305                     <scientific_name>Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni</scientific_name>
4306                   </taxonomy>
4307                 </clade>
4308               </clade>
4309             </clade>
4310             <clade>
4311               <name>b_225</name>
4312               <clade>
4313                 <name>b_219</name>
4314                 <clade>
4315                   <name>b_213</name>
4316                   <clade>
4317                     <name>b_211</name>
4318                     <clade>
4319                       <name>b_207</name>
4320                       <clade>
4321                         <name>b_203</name>
4322                         <clade>
4323                           <name>BACSU</name>
4324                           <taxonomy>
4325                             <id provider="uniprot">1423</id>
4326                             <code>BACSU</code>
4327                             <scientific_name>Bacillus subtilis</scientific_name>
4328                             <rank>species</rank>
4329                           </taxonomy>
4330                         </clade>
4331                         <clade>
4332                           <name>BACAN</name>
4333                           <taxonomy>
4334                             <id provider="uniprot">1392</id>
4335                             <code>BACAN</code>
4336                             <scientific_name>Bacillus anthracis</scientific_name>
4337                             <rank>species</rank>
4338                           </taxonomy>
4339                         </clade>
4340                       </clade>
4341                       <clade>
4342                         <name>b_206</name>
4343                         <clade>
4344                           <name>GEOKA</name>
4345                           <taxonomy>
4346                             <id provider="uniprot">1462</id>
4347                             <code>GEOKA</code>
4348                             <scientific_name>Geobacillus kaustophilus</scientific_name>
4349                             <rank>species</rank>
4350                           </taxonomy>
4351                         </clade>
4352                         <clade>
4353                           <name>BACHD</name>
4354                           <taxonomy>
4355                             <id provider="uniprot">86665</id>
4356                             <code>BACHD</code>
4357                             <scientific_name>Bacillus halodurans</scientific_name>
4358                             <rank>species</rank>
4359                           </taxonomy>
4360                         </clade>
4361                       </clade>
4362                     </clade>
4363                     <clade>
4364                       <name>b_210</name>
4365                       <clade>
4366                         <name>LISMO</name>
4367                         <taxonomy>
4368                           <id provider="uniprot">1639</id>
4369                           <code>LISMO</code>
4370                           <scientific_name>Listeria monocytogenes</scientific_name>
4371                           <rank>species</rank>
4372                         </taxonomy>
4373                       </clade>
4374                       <clade>
4375                         <name>STAAU</name>
4376                         <taxonomy>
4377                           <id provider="uniprot">1280</id>
4378                           <code>STAAU</code>
4379                           <scientific_name>Staphylococcus aureus</scientific_name>
4380                           <rank>species</rank>
4381                         </taxonomy>
4382                       </clade>
4383                     </clade>
4384                   </clade>
4385                   <clade>
4386                     <name>CLOP1</name>
4387                     <taxonomy>
4388                       <id provider="uniprot">195103</id>
4389                       <code>CLOP1</code>
4390                       <scientific_name>Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A)</scientific_name>
4391                     </taxonomy>
4392                   </clade>
4393                 </clade>
4394                 <clade>
4395                   <name>Clostridia</name>
4396                   <taxonomy>
4397                     <id provider="uniprot">186801</id>
4398                     <scientific_name>Clostridia</scientific_name>
4399                     <rank>class</rank>
4400                   </taxonomy>
4401                   <clade>
4402                     <name>b_218</name>
4403                     <clade>
4404                       <name>b_216</name>
4405                       <clade>
4406                         <name>CARHZ</name>
4407                         <taxonomy>
4408                           <id provider="uniprot">246194</id>
4409                           <code>CARHZ</code>
4410                           <scientific_name>Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008)</scientific_name>
4411                         </taxonomy>
4412                       </clade>
4413                       <clade>
4414                         <name>THETN</name>
4415                         <taxonomy>
4416                           <id provider="uniprot">119072</id>
4417                           <code>THETN</code>
4418                           <scientific_name>Thermoanaerobacter tengcongensis</scientific_name>
4419                           <rank>species</rank>
4420                         </taxonomy>
4421                       </clade>
4422                     </clade>
4423                     <clade>
4424                       <name>DESHA</name>
4425                       <taxonomy>
4426                         <id provider="uniprot">49338</id>
4427                         <code>DESHA</code>
4428                         <scientific_name>Desulfitobacterium hafniense</scientific_name>
4429                         <synonym>Desulfitobacterium frappieri</synonym>
4430                         <rank>species</rank>
4431                       </taxonomy>
4432                     </clade>
4433                   </clade>
4434                   <clade>
4435                     <name>EUBR3</name>
4436                     <taxonomy>
4437                       <id provider="uniprot">515619</id>
4438                       <code>EUBR3</code>
4439                       <scientific_name>Eubacterium rectale (strain ATCC 33656 / VPI 0990)</scientific_name>
4440                     </taxonomy>
4441                   </clade>
4442                 </clade>
4443               </clade>
4444               <clade>
4445                 <name>b_224</name>
4446                 <clade>
4447                   <name>b_222</name>
4448                   <clade>
4449                     <name>THELT</name>
4450                     <taxonomy>
4451                       <id provider="uniprot">416591</id>
4452                       <code>THELT</code>
4453                       <scientific_name>Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO)</scientific_name>
4454                     </taxonomy>
4455                   </clade>
4456                   <clade>
4457                     <name>FERNB</name>
4458                     <taxonomy>
4459                       <id provider="uniprot">381764</id>
4460                       <code>FERNB</code>
4461                       <scientific_name>Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1)</scientific_name>
4462                     </taxonomy>
4463                   </clade>
4464                 </clade>
4465                 <clade>
4466                   <name>THEMA</name>
4467                   <taxonomy>
4468                     <id provider="uniprot">2336</id>
4469                     <code>THEMA</code>
4470                     <scientific_name>Thermotoga maritima</scientific_name>
4471                     <rank>species</rank>
4472                   </taxonomy>
4473                 </clade>
4474               </clade>
4475             </clade>
4476           </clade>
4477           <clade>
4478             <name>b_267</name>
4479             <clade>
4480               <name>b_263</name>
4481               <clade>
4482                 <name>b_251</name>
4483                 <clade>
4484                   <name>b_249</name>
4485                   <clade>
4486                     <name>b_245</name>
4487                     <clade>
4488                       <name>b_237</name>
4489                       <clade>
4490                         <name>b_233</name>
4491                         <clade>
4492                           <name>b_231</name>
4493                           <clade>
4494                             <name>b_229</name>
4495                             <clade>
4496                               <name>MYCPN</name>
4497                               <taxonomy>
4498                                 <id provider="uniprot">2104</id>
4499                                 <code>MYCPN</code>
4500                                 <scientific_name>Mycoplasma pneumoniae</scientific_name>
4501                                 <rank>species</rank>
4502                               </taxonomy>
4503                             </clade>
4504                             <clade>
4505                               <name>MYCGE</name>
4506                               <taxonomy>
4507                                 <id provider="uniprot">2097</id>
4508                                 <code>MYCGE</code>
4509                                 <scientific_name>Mycoplasma genitalium</scientific_name>
4510                                 <rank>species</rank>
4511                               </taxonomy>
4512                             </clade>
4513                           </clade>
4514                           <clade>
4515                             <name>MESFL</name>
4516                             <taxonomy>
4517                               <id provider="uniprot">2151</id>
4518                               <code>MESFL</code>
4519                               <scientific_name>Mesoplasma florum</scientific_name>
4520                               <synonym>Acholeplasma florum</synonym>
4521                               <rank>species</rank>
4522                             </taxonomy>
4523                           </clade>
4524                         </clade>
4525                         <clade>
4526                           <name>UREPA</name>
4527                           <taxonomy>
4528                             <id provider="uniprot">134821</id>
4529                             <code>UREPA</code>
4530                             <scientific_name>Ureaplasma parvum</scientific_name>
4531                             <synonym>Ureaplasma urealyticum biotype 1</synonym>
4532                             <rank>species</rank>
4533                           </taxonomy>
4534                         </clade>
4535                       </clade>
4536                       <clade>
4537                         <name>b_236</name>
4538                         <clade>
4539                           <name>BORBU</name>
4540                           <taxonomy>
4541                             <id provider="uniprot">139</id>
4542                             <code>BORBU</code>
4543                             <scientific_name>Borrelia burgdorferi</scientific_name>
4544                             <common_name>Lyme disease spirochete</common_name>
4545                             <rank>species</rank>
4546                           </taxonomy>
4547                         </clade>
4548                         <clade>
4549                           <name>TREPA</name>
4550                           <taxonomy>
4551                             <id provider="uniprot">160</id>
4552                             <code>TREPA</code>
4553                             <scientific_name>Treponema pallidum</scientific_name>
4554                             <rank>species</rank>
4555                           </taxonomy>
4556                         </clade>
4557                       </clade>
4558                     </clade>
4559                     <clade>
4560                       <name>b_244</name>
4561                       <clade>
4562                         <name>b_242</name>
4563                         <clade>
4564                           <name>b_240</name>
4565                           <clade>
4566                             <name>CHLPN</name>
4567                             <taxonomy>
4568                               <id provider="uniprot">83558</id>
4569                               <code>CHLPN</code>
4570                               <scientific_name>Chlamydia pneumoniae</scientific_name>
4571                               <synonym>Chlamydophila pneumoniae</synonym>
4572                               <rank>species</rank>
4573                             </taxonomy>
4574                           </clade>
4575                           <clade>
4576                             <name>CHLFF</name>
4577                             <taxonomy>
4578                               <id provider="uniprot">264202</id>
4579                               <code>CHLFF</code>
4580                               <scientific_name>Chlamydophila felis (strain Fe/C-56)</scientific_name>
4581                             </taxonomy>
4582                           </clade>
4583                         </clade>
4584                         <clade>
4585                           <name>CHLMU</name>
4586                           <taxonomy>
4587                             <id provider="uniprot">83560</id>
4588                             <code>CHLMU</code>
4589                             <scientific_name>Chlamydia muridarum</scientific_name>
4590                             <rank>species</rank>
4591                           </taxonomy>
4592                         </clade>
4593                       </clade>
4594                       <clade>
4595                         <name>RICTY</name>
4596                         <taxonomy>
4597                           <id provider="uniprot">785</id>
4598                           <code>RICTY</code>
4599                           <scientific_name>Rickettsia typhi</scientific_name>
4600                           <rank>species</rank>
4601                         </taxonomy>
4602                       </clade>
4603                     </clade>
4604                   </clade>
4605                   <clade>
4606                     <name>b_248</name>
4607                     <clade>
4608                       <name>PELUB</name>
4609                       <taxonomy>
4610                         <id provider="uniprot">198252</id>
4611                         <code>PELUB</code>
4612                         <scientific_name>Pelagibacter ubique</scientific_name>
4613                         <rank>species</rank>
4614                       </taxonomy>
4615                     </clade>
4616                     <clade>
4617                       <name>BARHE</name>
4618                       <taxonomy>
4619                         <id provider="uniprot">38323</id>
4620                         <code>BARHE</code>
4621                         <scientific_name>Bartonella henselae</scientific_name>
4622                         <synonym>Rochalimaea henselae</synonym>
4623                         <rank>species</rank>
4624                       </taxonomy>
4625                     </clade>
4626                   </clade>
4627                 </clade>
4628                 <clade>
4629                   <name>FRATU</name>
4630                   <taxonomy>
4631                     <id provider="uniprot">263</id>
4632                     <code>FRATU</code>
4633                     <scientific_name>Francisella tularensis</scientific_name>
4634                     <rank>species</rank>
4635                   </taxonomy>
4636                 </clade>
4637               </clade>
4638               <clade>
4639                 <name>b_262</name>
4640                 <clade>
4641                   <name>b_260</name>
4642                   <clade>
4643                     <name>b_258</name>
4644                     <clade>
4645                       <name>b_256</name>
4646                       <clade>
4647                         <name>b_254</name>
4648                         <clade>
4649                           <name>STRPN</name>
4650                           <taxonomy>
4651                             <id provider="uniprot">1313</id>
4652                             <code>STRPN</code>
4653                             <scientific_name>Streptococcus pneumoniae</scientific_name>
4654                             <rank>species</rank>
4655                           </taxonomy>
4656                         </clade>
4657                         <clade>
4658                           <name>STRPY</name>
4659                           <taxonomy>
4660                             <id provider="uniprot">1314</id>
4661                             <code>STRPY</code>
4662                             <scientific_name>Streptococcus pyogenes</scientific_name>
4663                             <rank>species</rank>
4664                           </taxonomy>
4665                         </clade>
4666                       </clade>
4667                       <clade>
4668                         <name>LACLA</name>
4669                         <taxonomy>
4670                           <id provider="uniprot">1360</id>
4671                           <code>LACLA</code>
4672                           <scientific_name>Lactococcus lactis subsp. lactis</scientific_name>
4673                           <synonym>Streptococcus lactis</synonym>
4674                           <rank>subspecies</rank>
4675                         </taxonomy>
4676                       </clade>
4677                     </clade>
4678                     <clade>
4679                       <name>LACAC</name>
4680                       <taxonomy>
4681                         <id provider="uniprot">1579</id>
4682                         <code>LACAC</code>
4683                         <scientific_name>Lactobacillus acidophilus</scientific_name>
4684                         <rank>species</rank>
4685                       </taxonomy>
4686                     </clade>
4687                   </clade>
4688                   <clade>
4689                     <name>BIFLO</name>
4690                     <taxonomy>
4691                       <id provider="uniprot">216816</id>
4692                       <code>BIFLO</code>
4693                       <scientific_name>Bifidobacterium longum</scientific_name>
4694                       <rank>species</rank>
4695                     </taxonomy>
4696                   </clade>
4697                 </clade>
4698                 <clade>
4699                   <name>FUSNU</name>
4700                   <taxonomy>
4701                     <id provider="uniprot">851</id>
4702                     <code>FUSNU</code>
4703                     <scientific_name>Fusobacterium nucleatum</scientific_name>
4704                     <rank>species</rank>
4705                   </taxonomy>
4706                 </clade>
4707               </clade>
4708             </clade>
4709             <clade>
4710               <name>b_266</name>
4711               <clade>
4712                 <name>DEHE1</name>
4713                 <taxonomy>
4714                   <id provider="uniprot">243164</id>
4715                   <code>DEHE1</code>
4716                   <scientific_name>Dehalococcoides ethenogenes (strain 195)</scientific_name>
4717                 </taxonomy>
4718               </clade>
4719               <clade>
4720                 <name>DEHSB</name>
4721                 <taxonomy>
4722                   <id provider="uniprot">216389</id>
4723                   <code>DEHSB</code>
4724                   <scientific_name>Dehalococcoides sp. (strain BAV1)</scientific_name>
4725                   <rank>species</rank>
4726                 </taxonomy>
4727               </clade>
4728             </clade>
4729           </clade>
4730         </clade>
4731         <clade>
4732           <name>b_277</name>
4733           <clade>
4734             <name>b_273</name>
4735             <clade>
4736               <name>b_271</name>
4737               <clade>
4738                 <name>THIDN</name>
4739                 <taxonomy>
4740                   <code>THIDN</code>
4741                 </taxonomy>
4742               </clade>
4743               <clade>
4744                 <name>NITSB</name>
4745                 <taxonomy>
4746                   <id provider="uniprot">387092</id>
4747                   <code>NITSB</code>
4748                   <scientific_name>Nitratiruptor sp. (strain SB155-2)</scientific_name>
4749                   <rank>species</rank>
4750                 </taxonomy>
4751               </clade>
4752             </clade>
4753             <clade>
4754               <name>SULNB</name>
4755               <taxonomy>
4756                 <id provider="uniprot">387093</id>
4757                 <code>SULNB</code>
4758                 <scientific_name>Sulfurovum sp. (strain NBC37-1)</scientific_name>
4759                 <rank>species</rank>
4760               </taxonomy>
4761             </clade>
4762           </clade>
4763           <clade>
4764             <name>b_276</name>
4765             <clade>
4766               <name>HELPH</name>
4767               <taxonomy>
4768                 <id provider="uniprot">357544</id>
4769                 <code>HELPH</code>
4770                 <scientific_name>Helicobacter pylori (strain HPAG1)</scientific_name>
4771               </taxonomy>
4772             </clade>
4773             <clade>
4774               <name>CAMJE</name>
4775               <taxonomy>
4776                 <id provider="uniprot">197</id>
4777                 <code>CAMJE</code>
4778                 <scientific_name>Campylobacter jejuni</scientific_name>
4779                 <rank>species</rank>
4780               </taxonomy>
4781             </clade>
4782           </clade>
4783         </clade>
4784       </clade>
4785       <clade>
4786         <name>b_283</name>
4787         <clade>
4788           <name>b_281</name>
4789           <clade>
4790             <name>AQUAE</name>
4791             <taxonomy>
4792               <id provider="uniprot">63363</id>
4793               <code>AQUAE</code>
4794               <scientific_name>Aquifex aeolicus</scientific_name>
4795               <rank>species</rank>
4796             </taxonomy>
4797           </clade>
4798           <clade>
4799             <name>HYDY0</name>
4800             <taxonomy>
4801               <code>HYDY0</code>
4802             </taxonomy>
4803           </clade>
4804         </clade>
4805         <clade>
4806           <name>SULYO</name>
4807           <taxonomy>
4808             <code>SULYO</code>
4809           </taxonomy>
4810         </clade>
4811       </clade>
4812     </clade>
4813   </clade>
4814 </phylogeny>
4815 </phyloxml>