forester/data/tol_144.xml

   1 <?xml version="1.0" encoding="UTF-8"?>
   2 <phyloxml xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.phyloxml.org http://www.phyloxml.org/1.10/phyloxml.xsd" xmlns="http://www.phyloxml.org">
   3 <phylogeny rooted="true" rerootable="false">
   4   <clade>
   5     <name>cellular_organisms</name>
   6     <clade>
   7       <taxonomy>
   8         <scientific_name>Neomura</scientific_name>
   9       </taxonomy>
  10       <clade>
  11         <taxonomy>
  12           <id provider="uniprot">2759</id>
  13           <scientific_name>Eukaryota</scientific_name>
  14           <rank>superkingdom</rank>
  15         </taxonomy>
  16         <clade>
  17           <name>Unikonta</name>
  18           <clade>
  19             <name>Opisthokonta &amp; Apusozoa</name>
  20             <clade>
  21               <taxonomy>
  22                 <id provider="uniprot">33154</id>
  23                 <scientific_name>Opisthokonta</scientific_name>
  24                 <common_name>Fungi/Metazoa group</common_name>
  25               </taxonomy>
  26               <clade>
  27                 <taxonomy>
  28                   <scientific_name>Holozoa</scientific_name>
  29                 </taxonomy>
  30                 <clade>
  31                   <name>Choanoflagellatea &amp; Metazoa</name>
  32                   <clade>
  33                     <name>Metazoa</name>
  34                     <taxonomy>
  35                       <id provider="uniprot">33208</id>
  36                       <scientific_name>Metazoa</scientific_name>
  37                       <rank>kingdom</rank>
  38                     </taxonomy>
  39                     <clade>
  40                       <name>Eumetazoa</name>
  41                       <reference doi="10.1038/nature06614">
  42                       </reference>
  43                       <clade>
  44                         <name>Bilateria_Cnidaria</name>
  45                         <clade>
  46                           <name>Bilateria</name>
  47                           <clade>
  48                             <name>Deuterostomia</name>
  49                             <reference doi="10.1038/nature04336">
  50                             </reference>
  51                             <clade>
  52                               <name>Chordata</name>
  53                               <taxonomy>
  54                                 <id provider="uniprot">7711</id>
  55                                 <scientific_name>Chordata</scientific_name>
  56                                 <rank>phylum</rank>
  57                               </taxonomy>
  58                               <clade>
  59                                 <name>Urochordata &amp; Vertebrata</name>
  60                                 <clade>
  61                                   <taxonomy>
  62                                     <id provider="uniprot">7742</id>
  63                                     <scientific_name>Vertebrata</scientific_name>
  64                                   </taxonomy>
  65                                   <clade>
  66                                     <taxonomy>
  67                                       <id provider="uniprot">7776</id>
  68                                       <scientific_name>Gnathostomata</scientific_name>
  69                                       <common_name>jawed vertebrates</common_name>
  70                                       <rank>superclass</rank>
  71                                     </taxonomy>
  72                                     <clade>
  73                                       <taxonomy>
  74                                         <id provider="uniprot">117571</id>
  75                                         <scientific_name>Euteleostomi</scientific_name>
  76                                       </taxonomy>
  77                                       <clade>
  78                                         <name>Tetrapoda</name>
  79                                         <clade>
  80                                           <name>Amniota</name>
  81                                           <clade>
  82                                             <taxonomy>
  83                                               <id provider="uniprot">40674</id>
  84                                               <scientific_name>Mammalia</scientific_name>
  85                                               <rank>class</rank>
  86                                             </taxonomy>
  87                                             <clade>
  88                                               <name>Theria</name>
  89                                               <clade>
  90                                                 <taxonomy>
  91                                                   <id provider="uniprot">9347</id>
  92                                                   <scientific_name>Eutheria</scientific_name>
  93                                                   <common_name>Placental mammals</common_name>
  94                                                 </taxonomy>
  95                                                 <reference doi="10.1002/bies.200900053">
  96                                                   <desc>The new framework for understanding placental mammal evolution</desc>
  97                                                 </reference>
  98                                                 <clade>
  99                                                   <taxonomy>
 100                                                     <scientific_name>Boreoeutheria</scientific_name>
 101                                                     <synonym>Boreotheria</synonym>
 102                                                   </taxonomy>
 103                                                   <clade>
 104                                                     <taxonomy>
 105                                                       <id provider="uniprot">314146</id>
 106                                                       <scientific_name>Euarchontoglires</scientific_name>
 107                                                       <rank>superorder</rank>
 108                                                     </taxonomy>
 109                                                     <clade>
 110                                                       <taxonomy>
 111                                                         <scientific_name>Euarchonta</scientific_name>
 112                                                       </taxonomy>
 113                                                       <clade>
 114                                                         <taxonomy>
 115                                                           <id provider="uniprot">9443</id>
 116                                                           <scientific_name>Primates</scientific_name>
 117                                                           <rank>order</rank>
 118                                                         </taxonomy>
 119                                                         <clade>
 120                                                           <taxonomy>
 121                                                             <id provider="uniprot">376913</id>
 122                                                             <scientific_name>Haplorrhini</scientific_name>
 123                                                             <rank>suborder</rank>
 124                                                           </taxonomy>
 125                                                           <clade>
 126                                                             <taxonomy>
 127                                                               <id provider="uniprot">314293</id>
 128                                                               <scientific_name>Simiiformes</scientific_name>
 129                                                               <rank>infraorder</rank>
 130                                                             </taxonomy>
 131                                                             <clade>
 132                                                               <taxonomy>
 133                                                                 <id provider="uniprot">9526</id>
 134                                                                 <scientific_name>Catarrhini</scientific_name>
 135                                                               </taxonomy>
 136                                                               <clade>
 137                                                                 <taxonomy>
 138                                                                   <id provider="uniprot">314295</id>
 139                                                                   <scientific_name>Hominoidea</scientific_name>
 140                                                                   <common_name>Apes</common_name>
 141                                                                   <rank>superfamily</rank>
 142                                                                 </taxonomy>
 143                                                                 <clade>
 144                                                                   <taxonomy>
 145                                                                     <id provider="uniprot">9604</id>
 146                                                                     <scientific_name>Hominidae</scientific_name>
 147                                                                     <common_name>Great apes</common_name>
 148                                                                     <rank>family</rank>
 149                                                                   </taxonomy>
 150                                                                   <clade>
 151                                                                     <taxonomy>
 152                                                                       <id provider="uniprot">207598</id>
 153                                                                       <scientific_name>Homininae</scientific_name>
 154                                                                       <rank>subfamily</rank>
 155                                                                     </taxonomy>
 156                                                                     <clade>
 157                                                                       <taxonomy>
 158                                                                         <scientific_name>Hominini</scientific_name>
 159                                                                         <rank>tribe</rank>
 160                                                                       </taxonomy>
 161                                                                       <clade>
 162                                                                         <taxonomy>
 163                                                                           <id provider="uniprot">9606</id>
 164                                                                           <code>HUMAN</code>
 165                                                                           <scientific_name>Homo sapiens</scientific_name>
 166                                                                           <common_name>Human</common_name>
 167                                                                           <rank>species</rank>
 168                                                                           <uri>http://www.thehindu.com/multimedia/dynamic/00029/IN05_DARWIN_29896f.jpg</uri>
 169                                                                         </taxonomy>
 170                                                                       </clade>
 171                                                                       <clade>
 172                                                                         <taxonomy>
 173                                                                           <id provider="uniprot">9598</id>
 174                                                                           <code>PANTR</code>
 175                                                                           <scientific_name>Pan troglodytes</scientific_name>
 176                                                                           <common_name>Chimpanzee</common_name>
 177                                                                           <rank>species</rank>
 178                                                                           <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/8/8b/Schimpanse_zoo-leipig.jpg/800px-Schimpanse_zoo-leipig.jpg</uri>
 179                                                                         </taxonomy>
 180                                                                       </clade>
 181                                                                     </clade>
 182                                                                     <clade>
 183                                                                       <taxonomy>
 184                                                                         <id provider="uniprot">9595</id>
 185                                                                         <code>GORGO</code>
 186                                                                         <scientific_name>Gorilla gorilla gorilla</scientific_name>
 187                                                                         <common_name>Western lowland gorilla</common_name>
 188                                                                         <rank>subspecies</rank>
 189                                                                         <uri>http://upload.wikimedia.org/wikipedia/commons/c/c7/Stavenn_Gorilla_gorilla_00.jpg</uri>
 190                                                                       </taxonomy>
 191                                                                     </clade>
 192                                                                   </clade>
 193                                                                   <clade>
 194                                                                     <taxonomy>
 195                                                                       <id provider="uniprot">9601</id>
 196                                                                       <code>PONAB</code>
 197                                                                       <scientific_name>Pongo abelii</scientific_name>
 198                                                                       <common_name>Sumatran orangutan</common_name>
 199                                                                       <synonym>Pongo pygmaeus abelii</synonym>
 200                                                                       <rank>species</rank>
 201                                                                       <uri>http://www.kidszoo.org/images/animals/orangutan.jpg</uri>
 202                                                                     </taxonomy>
 203                                                                   </clade>
 204                                                                 </clade>
 205                                                                 <clade>
 206                                                                   <taxonomy>
 207                                                                     <id provider="uniprot">61853</id>
 208                                                                     <code>NOMLE</code>
 209                                                                     <scientific_name>Nomascus leucogenys</scientific_name>
 210                                                                     <common_name>Northern white-cheeked gibbon</common_name>
 211                                                                     <synonym>Hylobates leucogenys</synonym>
 212                                                                     <synonym>Hylobates concolor leucogenys</synonym>
 213                                                                     <rank>species</rank>
 214                                                                     <uri>http://uswest.ensembl.org/img/species/pic_Nomascus_leucogenys.png</uri>
 215                                                                     <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/1/1b/Hylobates_concolor2.jpg/450px-Hylobates_concolor2.jpg</uri>
 216                                                                   </taxonomy>
 217                                                                 </clade>
 218                                                               </clade>
 219                                                               <clade>
 220                                                                 <taxonomy>
 221                                                                   <id provider="uniprot">9528</id>
 222                                                                   <scientific_name>Cercopithecinae</scientific_name>
 223                                                                   <rank>subfamily</rank>
 224                                                                 </taxonomy>
 225                                                                 <clade>
 226                                                                   <taxonomy>
 227                                                                     <id provider="uniprot">9544</id>
 228                                                                     <code>MACMU</code>
 229                                                                     <scientific_name>Macaca mulatta</scientific_name>
 230                                                                     <common_name>Rhesus macaque</common_name>
 231                                                                     <rank>species</rank>
 232                                                                     <uri>http://www.biolib.cz/IMG/GAL/39329.jpg</uri>
 233                                                                   </taxonomy>
 234                                                                 </clade>
 235                                                                 <clade>
 236                                                                   <taxonomy>
 237                                                                     <id provider="uniprot">9557</id>
 238                                                                     <code>PAPHA</code>
 239                                                                     <scientific_name>Papio hamadryas</scientific_name>
 240                                                                     <common_name>Hamadryas baboon</common_name>
 241                                                                     <rank>species</rank>
 242                                                                     <uri>http://pin.primate.wisc.edu/fs/sheets/images/227lg.jpg</uri>
 243                                                                   </taxonomy>
 244                                                                 </clade>
 245                                                               </clade>
 246                                                             </clade>
 247                                                             <clade>
 248                                                               <taxonomy>
 249                                                                 <id provider="uniprot">9483</id>
 250                                                                 <code>CALJA</code>
 251                                                                 <scientific_name>Callithrix jacchus</scientific_name>
 252                                                                 <common_name>White-tufted-ear marmoset</common_name>
 253                                                                 <synonym>Callithrix jacchus jacchus</synonym>
 254                                                                 <rank>species</rank>
 255                                                                 <uri>http://www.arthurgrosset.com/mammals/photos/caljac28086.jpg</uri>
 256                                                               </taxonomy>
 257                                                             </clade>
 258                                                           </clade>
 259                                                           <clade>
 260                                                             <taxonomy>
 261                                                               <id provider="uniprot">9478</id>
 262                                                               <code>TARSY</code>
 263                                                               <scientific_name>Tarsius syrichta</scientific_name>
 264                                                               <common_name>Philippine tarsier</common_name>
 265                                                               <rank>species</rank>
 266                                                               <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0408/1425.jpeg</uri>
 267                                                             </taxonomy>
 268                                                           </clade>
 269                                                         </clade>
 270                                                         <clade>
 271                                                           <taxonomy>
 272                                                             <id provider="uniprot">376911</id>
 273                                                             <scientific_name>Strepsirrhini</scientific_name>
 274                                                             <rank>suborder</rank>
 275                                                           </taxonomy>
 276                                                           <clade>
 277                                                             <taxonomy>
 278                                                               <id provider="uniprot">30608</id>
 279                                                               <code>MICMU</code>
 280                                                               <scientific_name>Microcebus murinus</scientific_name>
 281                                                               <common_name>Lesser mouse lemur</common_name>
 282                                                               <rank>species</rank>
 283                                                               <uri>http://daniel.montagnon.pagesperso-orange.fr/images/MicrocbusMurinus.jpg</uri>
 284                                                             </taxonomy>
 285                                                           </clade>
 286                                                           <clade>
 287                                                             <taxonomy>
 288                                                               <id provider="uniprot">30611</id>
 289                                                               <code>OTOGA</code>
 290                                                               <scientific_name>Otolemur garnettii</scientific_name>
 291                                                               <common_name>Garnett&apos;s greater bushbaby</common_name>
 292                                                               <synonym>Galago garnetti</synonym>
 293                                                               <synonym>Small-eared galago</synonym>
 294                                                               <synonym>Garnett&apos;s greater bushbaby</synonym>
 295                                                               <rank>species</rank>
 296                                                               <uri>http://www.mbweni.com/images/Mbweni%20Images/naturetrail/small-earedgalago.jpg</uri>
 297                                                             </taxonomy>
 298                                                           </clade>
 299                                                         </clade>
 300                                                       </clade>
 301                                                       <clade>
 302                                                         <taxonomy>
 303                                                           <id provider="uniprot">37347</id>
 304                                                           <code>TUPBE</code>
 305                                                           <scientific_name>Tupaia belangeri</scientific_name>
 306                                                           <common_name>Common tree shrew</common_name>
 307                                                           <synonym>Tupaia glis belangeri</synonym>
 308                                                           <rank>species</rank>
 309                                                           <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/4/44/Tupaia_belangeri.JPG/800px-Tupaia_belangeri.JPG</uri>
 310                                                         </taxonomy>
 311                                                       </clade>
 312                                                     </clade>
 313                                                     <clade>
 314                                                       <taxonomy>
 315                                                         <id provider="uniprot">314147</id>
 316                                                         <scientific_name>Glires</scientific_name>
 317                                                         <common_name>Rodents and rabbits</common_name>
 318                                                       </taxonomy>
 319                                                       <clade>
 320                                                         <taxonomy>
 321                                                           <id provider="uniprot">9989</id>
 322                                                           <scientific_name>Rodentia</scientific_name>
 323                                                           <rank>order</rank>
 324                                                         </taxonomy>
 325                                                         <clade>
 326                                                           <name>Ctenohystrica &amp; Mouse-related clade</name>
 327                                                           <reference doi="10.1186/1471-2148-9-71">
 328                                                             <desc>Rodent phylogeny revised: analysis of six nuclear genes from all major rodent clades.</desc>
 329                                                           </reference>
 330                                                           <clade>
 331                                                             <taxonomy>
 332                                                               <common_name>Mouse-related clade</common_name>
 333                                                             </taxonomy>
 334                                                             <clade>
 335                                                               <taxonomy>
 336                                                                 <id provider="uniprot">337687</id>
 337                                                                 <scientific_name>Muroidea</scientific_name>
 338                                                               </taxonomy>
 339                                                               <clade>
 340                                                                 <taxonomy>
 341                                                                   <id provider="uniprot">39107</id>
 342                                                                   <scientific_name>Murinae</scientific_name>
 343                                                                   <rank>subfamily</rank>
 344                                                                 </taxonomy>
 345                                                                 <clade>
 346                                                                   <taxonomy>
 347                                                                     <id provider="uniprot">10090</id>
 348                                                                     <code>MOUSE</code>
 349                                                                     <scientific_name>Mus musculus</scientific_name>
 350                                                                     <common_name>Mouse</common_name>
 351                                                                     <rank>species</rank>
 352                                                                     <uri>http://www.zoologi.no/patlas/images/husmus-RS.jpg</uri>
 353                                                                   </taxonomy>
 354                                                                 </clade>
 355                                                                 <clade>
 356                                                                   <taxonomy>
 357                                                                     <id provider="uniprot">10116</id>
 358                                                                     <code>RAT</code>
 359                                                                     <scientific_name>Rattus norvegicus</scientific_name>
 360                                                                     <common_name>Rat</common_name>
 361                                                                     <rank>species</rank>
 362                                                                     <uri>http://upload.wikimedia.org/wikipedia/commons/0/01/Rattus_norvegicus_1.jpg</uri>
 363                                                                   </taxonomy>
 364                                                                 </clade>
 365                                                               </clade>
 366                                                               <clade>
 367                                                                 <taxonomy>
 368                                                                   <id provider="uniprot">10036</id>
 369                                                                   <code>MESAU</code>
 370                                                                   <scientific_name>Mesocricetus auratus</scientific_name>
 371                                                                   <common_name>Golden hamster</common_name>
 372                                                                   <rank>species</rank>
 373                                                                   <uri>http://www.zipcodezoo.com/hp350/Mesocricetus_auratus_0.jpg</uri>
 374                                                                 </taxonomy>
 375                                                               </clade>
 376                                                             </clade>
 377                                                             <clade>
 378                                                               <taxonomy>
 379                                                                 <id provider="uniprot">10020</id>
 380                                                                 <code>DIPOR</code>
 381                                                                 <scientific_name>Dipodomys ordii</scientific_name>
 382                                                                 <common_name>Ord&apos;s kangaroo rat</common_name>
 383                                                                 <rank>species</rank>
 384                                                                 <uri>http://www.nsrl.ttu.edu/tmot1/images/dipoordi.jpg</uri>
 385                                                               </taxonomy>
 386                                                             </clade>
 387                                                           </clade>
 388                                                           <clade>
 389                                                             <taxonomy>
 390                                                               <id provider="uniprot">10141</id>
 391                                                               <code>CAVPO</code>
 392                                                               <scientific_name>Cavia porcellus</scientific_name>
 393                                                               <common_name>Guinea pig</common_name>
 394                                                               <rank>species</rank>
 395                                                               <uri>http://upload.wikimedia.org/wikipedia/commons/7/77/Guinea_1.jpg</uri>
 396                                                             </taxonomy>
 397                                                           </clade>
 398                                                         </clade>
 399                                                         <clade>
 400                                                           <taxonomy>
 401                                                             <id provider="uniprot">43179</id>
 402                                                             <code>SPETR</code>
 403                                                             <scientific_name>Spermophilus tridecemlineatus</scientific_name>
 404                                                             <common_name>Thirteen-lined ground squirrel</common_name>
 405                                                             <synonym>Ictidomys tridecemlineatus</synonym>
 406                                                             <rank>species</rank>
 407                                                             <uri>http://animaldiversity.ummz.umich.edu/site/resources/phil_myers/ADW_mammals/Rodentia/Spermophilus4345.jpg/medium.jpg</uri>
 408                                                           </taxonomy>
 409                                                         </clade>
 410                                                       </clade>
 411                                                       <clade>
 412                                                         <taxonomy>
 413                                                           <id provider="uniprot">9975</id>
 414                                                           <scientific_name>Lagomorpha</scientific_name>
 415                                                           <common_name>Rabbits, hares, pikas</common_name>
 416                                                           <rank>order</rank>
 417                                                         </taxonomy>
 418                                                         <clade>
 419                                                           <taxonomy>
 420                                                             <id provider="uniprot">9978</id>
 421                                                             <code>OCHPR</code>
 422                                                             <scientific_name>Ochotona princeps</scientific_name>
 423                                                             <common_name>Southern American pika</common_name>
 424                                                             <rank>species</rank>
 425                                                             <uri>http://upload.wikimedia.org/wikipedia/commons/3/3b/Ochotona_princeps.jpg</uri>
 426                                                           </taxonomy>
 427                                                         </clade>
 428                                                         <clade>
 429                                                           <taxonomy>
 430                                                             <id provider="uniprot">9986</id>
 431                                                             <code>RABIT</code>
 432                                                             <scientific_name>Oryctolagus cuniculus</scientific_name>
 433                                                             <common_name>Rabbit</common_name>
 434                                                             <rank>species</rank>
 435                                                             <uri>http://www.animalpictures.tk/wp-content/uploads/pictures/pictures-of-rabbit-pictures-818.jpg</uri>
 436                                                             <uri>http://greennature.com/gallery/farm-animal-pictures/albino_rabbit.jpg</uri>
 437                                                           </taxonomy>
 438                                                         </clade>
 439                                                       </clade>
 440                                                     </clade>
 441                                                   </clade>
 442                                                   <clade>
 443                                                     <taxonomy>
 444                                                       <id provider="uniprot">314145</id>
 445                                                       <scientific_name>Laurasiatheria</scientific_name>
 446                                                       <rank>superorder</rank>
 447                                                     </taxonomy>
 448                                                     <clade>
 449                                                       <taxonomy>
 450                                                         <scientific_name>Scrotifera</scientific_name>
 451                                                       </taxonomy>
 452                                                       <clade>
 453                                                         <name>Perissodactyla &amp; Cetartiodactyla &amp; Chiroptera</name>
 454                                                         <clade>
 455                                                           <name>Perissodactyla &amp; Cetartiodactyla</name>
 456                                                           <clade>
 457                                                             <taxonomy>
 458                                                               <id provider="uniprot">91561</id>
 459                                                               <scientific_name>Cetartiodactyla</scientific_name>
 460                                                               <common_name>Even-toed ungulates</common_name>
 461                                                             </taxonomy>
 462                                                             <clade>
 463                                                               <name>Cetruminantia &amp; Suina</name>
 464                                                               <clade>
 465                                                                 <taxonomy>
 466                                                                   <scientific_name>Cetruminantia</scientific_name>
 467                                                                 </taxonomy>
 468                                                                 <clade>
 469                                                                   <taxonomy>
 470                                                                     <id provider="uniprot">9895</id>
 471                                                                     <scientific_name>Bovidae</scientific_name>
 472                                                                     <rank>family</rank>
 473                                                                   </taxonomy>
 474                                                                   <clade>
 475                                                                     <taxonomy>
 476                                                                       <id provider="uniprot">9913</id>
 477                                                                       <code>BOVIN</code>
 478                                                                       <scientific_name>Bos taurus</scientific_name>
 479                                                                       <common_name>Bovine</common_name>
 480                                                                       <synonym>Bos bovis</synonym>
 481                                                                       <rank>species</rank>
 482                                                                       <uri>http://www.biolib.cz/IMG/GAL/18578.jpg</uri>
 483                                                                     </taxonomy>
 484                                                                   </clade>
 485                                                                   <clade>
 486                                                                     <taxonomy>
 487                                                                       <id provider="uniprot">9940</id>
 488                                                                       <code>SHEEP</code>
 489                                                                       <scientific_name>Ovis aries</scientific_name>
 490                                                                       <common_name>Sheep</common_name>
 491                                                                       <rank>species</rank>
 492                                                                       <uri>http://animaldiversity.ummz.umich.edu/site/resources/james_dowlinghealey/blacksheep.jpg/medium.jpg</uri>
 493                                                                     </taxonomy>
 494                                                                   </clade>
 495                                                                 </clade>
 496                                                                 <clade>
 497                                                                   <taxonomy>
 498                                                                     <id provider="uniprot">9721</id>
 499                                                                     <scientific_name>Cetacea</scientific_name>
 500                                                                     <common_name>Whales</common_name>
 501                                                                     <rank>order</rank>
 502                                                                   </taxonomy>
 503                                                                   <clade>
 504                                                                     <taxonomy>
 505                                                                       <id provider="uniprot">9771</id>
 506                                                                       <code>BALMU</code>
 507                                                                       <scientific_name>Balaenoptera musculus</scientific_name>
 508                                                                       <common_name>Blue whale</common_name>
 509                                                                       <rank>species</rank>
 510                                                                       <uri>http://2.bp.blogspot.com/_W90V87w3sr8/TT63uRT_U9I/AAAAAAAAAo8/to9O8zEeo7k/s1600/bluewhale.jpg</uri>
 511                                                                     </taxonomy>
 512                                                                   </clade>
 513                                                                   <clade>
 514                                                                     <taxonomy>
 515                                                                       <id provider="uniprot">9739</id>
 516                                                                       <code>TURTR</code>
 517                                                                       <scientific_name>Tursiops truncatus</scientific_name>
 518                                                                       <common_name>Atlantic bottle-nosed dolphin</common_name>
 519                                                                       <synonym>Delphinus truncatus</synonym>
 520                                                                       <rank>species</rank>
 521                                                                       <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/a/a6/Bottlenose_Dolphin_KSC04pd0178.jpg/800px-Bottlenose_Dolphin_KSC04pd0178.jpg</uri>
 522                                                                     </taxonomy>
 523                                                                   </clade>
 524                                                                 </clade>
 525                                                               </clade>
 526                                                               <clade>
 527                                                                 <taxonomy>
 528                                                                   <id provider="uniprot">9823</id>
 529                                                                   <code>PIG</code>
 530                                                                   <scientific_name>Sus scrofa</scientific_name>
 531                                                                   <common_name>Pig</common_name>
 532                                                                   <rank>species</rank>
 533                                                                   <uri>http://www.batraciens-reptiles.com/sus%20scrofa2.jpg</uri>
 534                                                                 </taxonomy>
 535                                                               </clade>
 536                                                             </clade>
 537                                                             <clade>
 538                                                               <taxonomy>
 539                                                                 <id provider="uniprot">30538</id>
 540                                                                 <code>LAMPA</code>
 541                                                                 <scientific_name>Lama guanicoe pacos</scientific_name>
 542                                                                 <common_name>Alpaca</common_name>
 543                                                                 <synonym>Lama pacos</synonym>
 544                                                                 <rank>species</rank>
 545                                                                 <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/8/8f/A_group_of_Alpacas_on_a_property_including_cria.jpg/800px-A_group_of_Alpacas_on_a_property_including_cria.jpg</uri>
 546                                                               </taxonomy>
 547                                                             </clade>
 548                                                           </clade>
 549                                                           <clade>
 550                                                             <taxonomy>
 551                                                               <id provider="uniprot">9796</id>
 552                                                               <code>HORSE</code>
 553                                                               <scientific_name>Equus caballus</scientific_name>
 554                                                               <common_name>Horse</common_name>
 555                                                               <rank>species</rank>
 556                                                               <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0801/0088.jpeg</uri>
 557                                                             </taxonomy>
 558                                                           </clade>
 559                                                         </clade>
 560                                                         <clade>
 561                                                           <taxonomy>
 562                                                             <id provider="uniprot">9397</id>
 563                                                             <scientific_name>Chiroptera</scientific_name>
 564                                                             <common_name>Bats</common_name>
 565                                                             <rank>order</rank>
 566                                                           </taxonomy>
 567                                                           <clade>
 568                                                             <taxonomy>
 569                                                               <id provider="uniprot">59463</id>
 570                                                               <code>MYOLU</code>
 571                                                               <scientific_name>Myotis lucifugus</scientific_name>
 572                                                               <common_name>Little brown bat</common_name>
 573                                                               <rank>species</rank>
 574                                                               <uri>http://biology.lakeheadu.ca/uploads/Nature_photography/brown_bat.jpg</uri>
 575                                                             </taxonomy>
 576                                                           </clade>
 577                                                           <clade>
 578                                                             <taxonomy>
 579                                                               <id provider="uniprot">132908</id>
 580                                                               <code>PTEVA</code>
 581                                                               <scientific_name>Pteropus vampyrus</scientific_name>
 582                                                               <common_name>Large flying fox</common_name>
 583                                                               <rank>species</rank>
 584                                                               <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/5/5e/Pteropus_vampyrus1.jpg/412px-Pteropus_vampyrus1.jpg</uri>
 585                                                             </taxonomy>
 586                                                           </clade>
 587                                                         </clade>
 588                                                       </clade>
 589                                                       <clade>
 590                                                         <name>Carnivora</name>
 591                                                         <taxonomy>
 592                                                           <id provider="uniprot">33554</id>
 593                                                           <scientific_name>Carnivora</scientific_name>
 594                                                           <rank>order</rank>
 595                                                         </taxonomy>
 596                                                         <clade>
 597                                                           <taxonomy>
 598                                                             <id provider="uniprot">379584</id>
 599                                                             <scientific_name>Caniformia</scientific_name>
 600                                                             <rank>suborder</rank>
 601                                                           </taxonomy>
 602                                                           <clade>
 603                                                             <taxonomy>
 604                                                               <id provider="uniprot">9646</id>
 605                                                               <code>AILME</code>
 606                                                               <scientific_name>Ailuropoda melanoleuca</scientific_name>
 607                                                               <common_name>Giant panda</common_name>
 608                                                               <rank>species</rank>
 609                                                               <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/3/3c/Giant_Panda_2004-03-2.jpg/800px-Giant_Panda_2004-03-2.jpg</uri>
 610                                                             </taxonomy>
 611                                                           </clade>
 612                                                           <clade>
 613                                                             <taxonomy>
 614                                                               <id provider="uniprot">9615</id>
 615                                                               <code>CANFA</code>
 616                                                               <scientific_name>Canis familiaris</scientific_name>
 617                                                               <common_name>Dog</common_name>
 618                                                               <synonym>Canis lupus familiaris</synonym>
 619                                                               <rank>subspecies</rank>
 620                                                               <uri>http://upload.wikimedia.org/wikipedia/commons/a/ab/Wikilabrador_jardin.JPG</uri>
 621                                                             </taxonomy>
 622                                                           </clade>
 623                                                         </clade>
 624                                                         <clade>
 625                                                           <taxonomy>
 626                                                             <id provider="uniprot">9685</id>
 627                                                             <code>FELCA</code>
 628                                                             <scientific_name>Felis catus</scientific_name>
 629                                                             <common_name>Cat</common_name>
 630                                                             <synonym>Felis silvestris catus</synonym>
 631                                                             <rank>species</rank>
 632                                                             <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/9/9b/Domestic_cat_cropped.jpg/755px-Domestic_cat_cropped.jpg</uri>
 633                                                           </taxonomy>
 634                                                         </clade>
 635                                                       </clade>
 636                                                     </clade>
 637                                                     <clade>
 638                                                       <taxonomy>
 639                                                         <id provider="uniprot">9362</id>
 640                                                         <scientific_name>Insectivora</scientific_name>
 641                                                         <common_name>hedgehogs, shrews, moles and others</common_name>
 642                                                         <rank>order</rank>
 643                                                       </taxonomy>
 644                                                       <clade>
 645                                                         <taxonomy>
 646                                                           <id provider="uniprot">9365</id>
 647                                                           <code>ERIEU</code>
 648                                                           <scientific_name>Erinaceus europaeus</scientific_name>
 649                                                           <common_name>Western European hedgehog</common_name>
 650                                                           <rank>species</rank>
 651                                                           <uri>http://upload.wikimedia.org/wikipedia/commons/d/d4/Igel01.jpg</uri>
 652                                                         </taxonomy>
 653                                                       </clade>
 654                                                       <clade>
 655                                                         <taxonomy>
 656                                                           <id provider="uniprot">42254</id>
 657                                                           <code>SORAR</code>
 658                                                           <scientific_name>Sorex araneus</scientific_name>
 659                                                           <common_name>Eurasian common shrew</common_name>
 660                                                           <synonym>European shrew</synonym>
 661                                                           <rank>species</rank>
 662                                                           <uri>http://www.batraciens-reptiles.com/musaraigne2.jpg</uri>
 663                                                         </taxonomy>
 664                                                       </clade>
 665                                                     </clade>
 666                                                   </clade>
 667                                                 </clade>
 668                                                 <clade>
 669                                                   <taxonomy>
 670                                                     <scientific_name>Atlantogenata</scientific_name>
 671                                                   </taxonomy>
 672                                                   <clade>
 673                                                     <taxonomy>
 674                                                       <id provider="uniprot">311790</id>
 675                                                       <scientific_name>Afrotheria</scientific_name>
 676                                                       <rank>superorder</rank>
 677                                                     </taxonomy>
 678                                                     <clade>
 679                                                       <taxonomy>
 680                                                         <scientific_name>Paenungulata</scientific_name>
 681                                                       </taxonomy>
 682                                                       <clade>
 683                                                         <taxonomy>
 684                                                           <id provider="uniprot">9785</id>
 685                                                           <code>LOXAF</code>
 686                                                           <scientific_name>Loxodonta africana</scientific_name>
 687                                                           <common_name>African savanna elephant</common_name>
 688                                                           <rank>species</rank>
 689                                                           <uri>http://animaldiversity.ummz.umich.edu/site/resources/susan_hoffman/elephants.jpg</uri>
 690                                                         </taxonomy>
 691                                                       </clade>
 692                                                       <clade>
 693                                                         <taxonomy>
 694                                                           <id provider="uniprot">9813</id>
 695                                                           <code>PROCA</code>
 696                                                           <scientific_name>Procavia capensis</scientific_name>
 697                                                           <common_name>Cape hyrax</common_name>
 698                                                           <synonym>Rock dassie</synonym>
 699                                                           <rank>species</rank>
 700                                                           <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/1206/0460.jpeg</uri>
 701                                                         </taxonomy>
 702                                                       </clade>
 703                                                     </clade>
 704                                                     <clade>
 705                                                       <taxonomy>
 706                                                         <id provider="uniprot">9371</id>
 707                                                         <code>ECHTE</code>
 708                                                         <scientific_name>Echinops telfairi</scientific_name>
 709                                                         <common_name>Lesser hedgehog tenrec</common_name>
 710                                                         <rank>species</rank>
 711                                                         <uri>http://animaldiversity.ummz.umich.edu/site/resources/david_kupitz/etelfairi.jpg</uri>
 712                                                       </taxonomy>
 713                                                     </clade>
 714                                                   </clade>
 715                                                   <clade>
 716                                                     <taxonomy>
 717                                                       <id provider="uniprot">9348</id>
 718                                                       <scientific_name>Xenarthra</scientific_name>
 719                                                       <synonym>Edentata</synonym>
 720                                                       <rank>superorder</rank>
 721                                                     </taxonomy>
 722                                                     <clade>
 723                                                       <taxonomy>
 724                                                         <id provider="uniprot">9358</id>
 725                                                         <code>CHOHO</code>
 726                                                         <scientific_name>Choloepus hoffmanni</scientific_name>
 727                                                         <common_name>Hoffmann&apos;s two-fingered sloth</common_name>
 728                                                         <rank>species</rank>
 729                                                         <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/8/89/Sloth8.jpg/800px-Sloth8.jpg</uri>
 730                                                       </taxonomy>
 731                                                     </clade>
 732                                                     <clade>
 733                                                       <taxonomy>
 734                                                         <id provider="uniprot">9361</id>
 735                                                         <code>DASNO</code>
 736                                                         <scientific_name>Dasypus novemcinctus</scientific_name>
 737                                                         <common_name>Nine-banded armadillo</common_name>
 738                                                         <rank>species</rank>
 739                                                         <uri>http://images.enature.com/mammals/mammals_l/ma0154_1l.jpg</uri>
 740                                                         <uri>http://anthropometaphors.files.wordpress.com/2008/11/nine-banded-armadillo41.jpg</uri>
 741                                                       </taxonomy>
 742                                                     </clade>
 743                                                   </clade>
 744                                                 </clade>
 745                                               </clade>
 746                                               <clade>
 747                                                 <taxonomy>
 748                                                   <id provider="uniprot">9263</id>
 749                                                   <scientific_name>Metatheria</scientific_name>
 750                                                   <common_name>Marsupials</common_name>
 751                                                 </taxonomy>
 752                                                 <distribution>
 753                                                   <point geodetic_datum="?" alt_unit="?">
 754                                                     <lat>0</lat>
 755                                                     <long>0</long>
 756                                                     <alt>0</alt>
 757                                                   </point>
 758                                                 </distribution>
 759                                                 <reference doi="10.1016/j.ympev.2004.05.004">
 760                                                   <desc>First combined cladistic analysis of marsupial mammal interrelationships</desc>
 761                                                 </reference>
 762                                                 <reference>
 763                                                 </reference>
 764                                                 <clade>
 765                                                   <taxonomy>
 766                                                     <scientific_name>Eometatheria</scientific_name>
 767                                                   </taxonomy>
 768                                                   <clade>
 769                                                     <taxonomy>
 770                                                       <id provider="uniprot">9315</id>
 771                                                       <code>MACEU</code>
 772                                                       <scientific_name>Macropus eugenii</scientific_name>
 773                                                       <common_name>Tammar wallaby</common_name>
 774                                                       <rank>species</rank>
 775                                                       <uri>http://upload.wikimedia.org/wikipedia/commons/d/de/Macropus_eugenii.jpg</uri>
 776                                                     </taxonomy>
 777                                                   </clade>
 778                                                   <clade>
 779                                                     <taxonomy>
 780                                                       <id provider="uniprot">9305</id>
 781                                                       <code>SARHA</code>
 782                                                       <scientific_name>Sarcophilus harrisii</scientific_name>
 783                                                       <common_name>Tasmanian devil</common_name>
 784                                                       <synonym>Sarcophilus laniarius</synonym>
 785                                                       <rank>species</rank>
 786                                                       <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/3/3b/Sarcophilus_harrisii_-Healesville_Sanctuary-8a.jpg/727px-Sarcophilus_harrisii_-Healesville_Sanctuary-8a.jpg</uri>
 787                                                     </taxonomy>
 788                                                   </clade>
 789                                                 </clade>
 790                                                 <clade>
 791                                                   <taxonomy>
 792                                                     <id provider="uniprot">13616</id>
 793                                                     <code>MONDO</code>
 794                                                     <scientific_name>Monodelphis domestica</scientific_name>
 795                                                     <common_name>Short-tailed gray opossum</common_name>
 796                                                     <rank>species</rank>
 797                                                     <uri>http://animaldiversity.ummz.umich.edu/site/resources/phil_myers/classic/monodelphis.jpg/medium.jpg</uri>
 798                                                   </taxonomy>
 799                                                 </clade>
 800                                               </clade>
 801                                             </clade>
 802                                             <clade>
 803                                               <taxonomy>
 804                                                 <id provider="uniprot">9258</id>
 805                                                 <code>ORNAN</code>
 806                                                 <scientific_name>Ornithorhynchus anatinus</scientific_name>
 807                                                 <common_name>Duckbill platypus</common_name>
 808                                                 <rank>species</rank>
 809                                                 <uri>http://www.biolib.cz/IMG/GAL/39610.jpg</uri>
 810                                               </taxonomy>
 811                                             </clade>
 812                                           </clade>
 813                                           <clade>
 814                                             <name>Diapsida</name>
 815                                             <clade>
 816                                               <name>Neognathae</name>
 817                                               <taxonomy>
 818                                                 <id provider="uniprot">8825</id>
 819                                                 <scientific_name>Neognathae</scientific_name>
 820                                                 <rank>superorder</rank>
 821                                               </taxonomy>
 822                                               <clade>
 823                                                 <name>Phasianidae &amp; Anatidae (waterfowl)</name>
 824                                                 <clade>
 825                                                   <taxonomy>
 826                                                     <id provider="uniprot">9005</id>
 827                                                     <scientific_name>Phasianidae</scientific_name>
 828                                                     <rank>family</rank>
 829                                                   </taxonomy>
 830                                                   <clade>
 831                                                     <taxonomy>
 832                                                       <id provider="uniprot">9031</id>
 833                                                       <code>CHICK</code>
 834                                                       <scientific_name>Gallus gallus</scientific_name>
 835                                                       <common_name>Chicken</common_name>
 836                                                       <synonym>Gallus domesticus</synonym>
 837                                                       <rank>species</rank>
 838                                                       <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/f/f8/Rooster04_adjusted.jpg/800px-Rooster04_adjusted.jpg</uri>
 839                                                     </taxonomy>
 840                                                   </clade>
 841                                                   <clade>
 842                                                     <taxonomy>
 843                                                       <id provider="uniprot">9103</id>
 844                                                       <code>MELGA</code>
 845                                                       <scientific_name>Meleagris gallopavo</scientific_name>
 846                                                       <common_name>Common turkey</common_name>
 847                                                       <rank>species</rank>
 848                                                       <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0205/0858.jpeg</uri>
 849                                                     </taxonomy>
 850                                                   </clade>
 851                                                 </clade>
 852                                                 <clade>
 853                                                   <taxonomy>
 854                                                     <id provider="uniprot">8839</id>
 855                                                     <code>ANAPL</code>
 856                                                     <scientific_name>Anas platyrhynchos</scientific_name>
 857                                                     <common_name>Domestic duck</common_name>
 858                                                     <synonym>Anas boschas</synonym>
 859                                                     <rank>species</rank>
 860                                                     <uri>http://content.ornith.cornell.edu/UEWebApp/images/MPR_070302_100009_L.jpg</uri>
 861                                                   </taxonomy>
 862                                                 </clade>
 863                                               </clade>
 864                                               <clade>
 865                                                 <taxonomy>
 866                                                   <id provider="uniprot">59729</id>
 867                                                   <code>TAEGU</code>
 868                                                   <scientific_name>Taeniopygia guttata</scientific_name>
 869                                                   <common_name>Zebra finch</common_name>
 870                                                   <synonym>Poephila guttata</synonym>
 871                                                   <rank>species</rank>
 872                                                   <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/8/84/Taeniopygia_guttata_-_front_view_-_dundee_wildlife_park.jpg/355px-Taeniopygia_guttata_-_front_view_-_dundee_wildlife_park.jpg</uri>
 873                                                 </taxonomy>
 874                                               </clade>
 875                                             </clade>
 876                                             <clade>
 877                                               <taxonomy>
 878                                                 <id provider="eol">795869</id>
 879                                                 <code>ANOCA</code>
 880                                                 <scientific_name>Anolis carolinensis</scientific_name>
 881                                                 <authority>Voigt, 1832</authority>
 882                                                 <common_name>Green anole</common_name>
 883                                                 <synonym>American chameleon</synonym>
 884                                                 <rank>species</rank>
 885                                                 <uri>http://content61.eol.org/content/2009/09/20/01/05528_580_360.jpg</uri>
 886                                                 <uri>http://content61.eol.org/content/2008/10/08/13/66818_580_360.jpg</uri>
 887                                               </taxonomy>
 888                                             </clade>
 889                                           </clade>
 890                                         </clade>
 891                                         <clade>
 892                                           <taxonomy>
 893                                             <id provider="uniprot">8364</id>
 894                                             <code>XENTR</code>
 895                                             <scientific_name>Xenopus tropicalis</scientific_name>
 896                                             <common_name>Western clawed frog</common_name>
 897                                             <synonym>Silurana tropicalis</synonym>
 898                                             <rank>species</rank>
 899                                             <uri>http://genoweb.univ-rennes1.fr/OGP/xenopus%20tropicalis.jpg</uri>
 900                                           </taxonomy>
 901                                         </clade>
 902                                       </clade>
 903                                       <clade>
 904                                         <name>Teleostei</name>
 905                                         <taxonomy>
 906                                           <id provider="uniprot">32443</id>
 907                                           <scientific_name>Teleostei</scientific_name>
 908                                         </taxonomy>
 909                                         <clade>
 910                                           <taxonomy>
 911                                             <id provider="uniprot">123368</id>
 912                                             <scientific_name>Acanthomorpha</scientific_name>
 913                                           </taxonomy>
 914                                           <clade>
 915                                             <taxonomy>
 916                                               <id provider="uniprot">32485</id>
 917                                               <scientific_name>Percomorpha</scientific_name>
 918                                             </taxonomy>
 919                                             <clade>
 920                                               <name>Smegmamorpha</name>
 921                                               <clade>
 922                                                 <taxonomy>
 923                                                   <id provider="uniprot">69293</id>
 924                                                   <code>GASAC</code>
 925                                                   <scientific_name>Gasterosteus aculeatus</scientific_name>
 926                                                   <common_name>Three-spined stickleback</common_name>
 927                                                   <rank>species</rank>
 928                                                   <uri>http://www.fiskbasen.se/images/gasterosteus_aculeatus.jpg</uri>
 929                                                 </taxonomy>
 930                                               </clade>
 931                                               <clade>
 932                                                 <taxonomy>
 933                                                   <id provider="uniprot">8090</id>
 934                                                   <code>ORYLA</code>
 935                                                   <scientific_name>Oryzias latipes</scientific_name>
 936                                                   <common_name>Medaka fish</common_name>
 937                                                   <synonym>Japanese ricefish</synonym>
 938                                                   <rank>species</rank>
 939                                                   <uri>http://upload.wikimedia.org/wikipedia/commons/4/49/Nihonmedaka.jpg</uri>
 940                                                 </taxonomy>
 941                                               </clade>
 942                                             </clade>
 943                                             <clade>
 944                                               <taxonomy>
 945                                                 <id provider="uniprot">31031</id>
 946                                                 <scientific_name>Tetraodontidae</scientific_name>
 947                                                 <common_name>puffers</common_name>
 948                                                 <rank>family</rank>
 949                                               </taxonomy>
 950                                               <clade>
 951                                                 <taxonomy>
 952                                                   <id provider="uniprot">31033</id>
 953                                                   <code>FUGRU</code>
 954                                                   <scientific_name>Takifugu rubripes</scientific_name>
 955                                                   <common_name>Japanese pufferfish</common_name>
 956                                                   <synonym>Fugu rubripes</synonym>
 957                                                   <rank>species</rank>
 958                                                   <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/2/25/Fugu_in_Tank.jpg/800px-Fugu_in_Tank.jpg</uri>
 959                                                 </taxonomy>
 960                                               </clade>
 961                                               <clade>
 962                                                 <taxonomy>
 963                                                   <id provider="uniprot">99883</id>
 964                                                   <code>TETNG</code>
 965                                                   <scientific_name>Tetraodon nigroviridis</scientific_name>
 966                                                   <common_name>Green puffer</common_name>
 967                                                   <synonym>Chelonodon nigroviridis</synonym>
 968                                                   <rank>species</rank>
 969                                                   <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/b/b6/Tetraodon_nigroviridis_1.jpg/800px-Tetraodon_nigroviridis_1.jpg</uri>
 970                                                 </taxonomy>
 971                                               </clade>
 972                                             </clade>
 973                                           </clade>
 974                                           <clade>
 975                                             <taxonomy>
 976                                               <id provider="uniprot">8049</id>
 977                                               <code>GADMO</code>
 978                                               <scientific_name>Gadus morhua</scientific_name>
 979                                               <common_name>Atlantic cod</common_name>
 980                                               <rank>species</rank>
 981                                               <uri>http://www.marinbi.com/g-morhua.jpg</uri>
 982                                             </taxonomy>
 983                                           </clade>
 984                                         </clade>
 985                                         <clade>
 986                                           <taxonomy>
 987                                             <id provider="uniprot">7955</id>
 988                                             <code>DANRE</code>
 989                                             <scientific_name>Danio rerio</scientific_name>
 990                                             <common_name>Zebrafish</common_name>
 991                                             <synonym>Brachydanio rerio</synonym>
 992                                             <rank>species</rank>
 993                                             <uri>http://fishbase.org.cn/images/species/Darer_m0.jpg</uri>
 994                                           </taxonomy>
 995                                         </clade>
 996                                       </clade>
 997                                     </clade>
 998                                     <clade>
 999                                       <taxonomy>
1000                                         <id provider="uniprot">7868</id>
1001                                         <code>CALMI</code>
1002                                         <scientific_name>Callorhynchus milii</scientific_name>
1003                                         <common_name>Australian ghost shark</common_name>
1004                                         <synonym>Australian ghost shark</synonym>
1005                                         <rank>species</rank>
1006                                         <uri>http://www.tudiscovery.com/tiburones/que_es/popup_que/asset/07914907646434433_elephant_shark_380x290.jpg</uri>
1007                                       </taxonomy>
1008                                     </clade>
1009                                   </clade>
1010                                   <clade>
1011                                     <taxonomy>
1012                                       <id provider="uniprot">7757</id>
1013                                       <code>PETMA</code>
1014                                       <scientific_name>Petromyzon marinus</scientific_name>
1015                                       <common_name>Sea lamprey</common_name>
1016                                       <rank>species</rank>
1017                                       <uri>http://www.uk-fish.info/pics/sealampray01.jpg</uri>
1018                                     </taxonomy>
1019                                   </clade>
1020                                 </clade>
1021                                 <clade>
1022                                   <name>Urochordata</name>
1023                                   <taxonomy>
1024                                     <id provider="uniprot">7712</id>
1025                                     <scientific_name>Urochordata</scientific_name>
1026                                     <rank>subphylum</rank>
1027                                   </taxonomy>
1028                                   <clade>
1029                                     <taxonomy>
1030                                       <id provider="uniprot">7718</id>
1031                                       <scientific_name>Ciona</scientific_name>
1032                                       <rank>genus</rank>
1033                                     </taxonomy>
1034                                     <clade>
1035                                       <taxonomy>
1036                                         <id provider="uniprot">7719</id>
1037                                         <code>CIOIN</code>
1038                                         <scientific_name>Ciona intestinalis</scientific_name>
1039                                         <common_name>Transparent sea squirt</common_name>
1040                                         <synonym>Ascidia intestinalis</synonym>
1041                                         <rank>species</rank>
1042                                         <uri>http://adl.brs.gov.au/marinepests/images/Ciona_intestinalis2.jpg</uri>
1043                                       </taxonomy>
1044                                     </clade>
1045                                     <clade>
1046                                       <taxonomy>
1047                                         <id provider="uniprot">51511</id>
1048                                         <code>CIOSA</code>
1049                                         <scientific_name>Ciona savignyi</scientific_name>
1050                                         <common_name>Pacific transparent sea squirt</common_name>
1051                                         <rank>species</rank>
1052                                         <uri>http://www.pnwscuba.com/invasives/photos/ciona4.jpg</uri>
1053                                       </taxonomy>
1054                                     </clade>
1055                                   </clade>
1056                                   <clade>
1057                                     <taxonomy>
1058                                       <id provider="ncbi">34765</id>
1059                                       <code>OIKDI</code>
1060                                       <scientific_name>Oikopleura dioica</scientific_name>
1061                                       <common_name>Tunicate</common_name>
1062                                       <rank>species</rank>
1063                                       <uri>http://jellieszone.com/images/oikopleura.jpg</uri>
1064                                     </taxonomy>
1065                                   </clade>
1066                                 </clade>
1067                               </clade>
1068                               <clade>
1069                                 <taxonomy>
1070                                   <id provider="uniprot">7739</id>
1071                                   <code>BRAFL</code>
1072                                   <scientific_name>Branchiostoma floridae</scientific_name>
1073                                   <common_name>Florida lancelet</common_name>
1074                                   <synonym>Amphioxus</synonym>
1075                                   <rank>species</rank>
1076                                   <uri>http://genome.jgi-psf.org/Brafl1/Amphioxus-1.jpg</uri>
1077                                 </taxonomy>
1078                               </clade>
1079                             </clade>
1080                             <clade>
1081                               <name>Hemichordata &amp; Echinodermata</name>
1082                               <clade>
1083                                 <taxonomy>
1084                                   <id provider="uniprot">10224</id>
1085                                   <code>SACKO</code>
1086                                   <scientific_name>Saccoglossus kowalevskii</scientific_name>
1087                                   <authority>Agassiz, 1873</authority>
1088                                   <common_name>Acorn worm</common_name>
1089                                   <rank>species</rank>
1090                                   <uri>http://www.amnh.org/exhibitions/hall_tour/spectrum/specimens/a158.jpg</uri>
1091                                 </taxonomy>
1092                               </clade>
1093                               <clade>
1094                                 <taxonomy>
1095                                   <id provider="uniprot">7668</id>
1096                                   <code>STRPU</code>
1097                                   <scientific_name>Strongylocentrotus purpuratus</scientific_name>
1098                                   <common_name>Purple sea urchin</common_name>
1099                                   <rank>species</rank>
1100                                   <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/f/f4/Strongylocentrotus_purpuratus_1.jpg/724px-Strongylocentrotus_purpuratus_1.jpg</uri>
1101                                 </taxonomy>
1102                               </clade>
1103                             </clade>
1104                           </clade>
1105                           <clade>
1106                             <name>Protostomia</name>
1107                             <clade>
1108                               <name>Ecdysozoa</name>
1109                               <clade>
1110                                 <taxonomy>
1111                                   <id provider="uniprot">6656</id>
1112                                   <scientific_name>Arthropoda</scientific_name>
1113                                   <rank>phylum</rank>
1114                                 </taxonomy>
1115                                 <clade>
1116                                   <taxonomy>
1117                                     <id provider="uniprot">197563</id>
1118                                     <scientific_name>Mandibulata</scientific_name>
1119                                   </taxonomy>
1120                                   <clade>
1121                                     <name>Pancrustacea</name>
1122                                     <clade>
1123                                       <taxonomy>
1124                                         <id provider="uniprot">33340</id>
1125                                         <scientific_name>Neoptera</scientific_name>
1126                                         <rank>subclass</rank>
1127                                       </taxonomy>
1128                                       <clade>
1129                                         <taxonomy>
1130                                           <id provider="uniprot">33392</id>
1131                                           <scientific_name>Endopterygota</scientific_name>
1132                                           <rank>infraclass</rank>
1133                                         </taxonomy>
1134                                         <clade>
1135                                           <name>Hymenoptera &amp; Lepidoptera &amp; Diptera</name>
1136                                           <clade>
1137                                             <name>Lepidoptera &amp; Diptera</name>
1138                                             <clade>
1139                                               <taxonomy>
1140                                                 <id provider="uniprot">7147</id>
1141                                                 <scientific_name>Diptera</scientific_name>
1142                                                 <rank>order</rank>
1143                                               </taxonomy>
1144                                               <clade>
1145                                                 <taxonomy>
1146                                                   <id provider="uniprot">7157</id>
1147                                                   <scientific_name>Culicidae</scientific_name>
1148                                                   <common_name>mosquitos</common_name>
1149                                                   <rank>family</rank>
1150                                                 </taxonomy>
1151                                                 <clade>
1152                                                   <taxonomy>
1153                                                     <id provider="uniprot">7159</id>
1154                                                     <code>AEDAE</code>
1155                                                     <scientific_name>Aedes aegypti</scientific_name>
1156                                                     <common_name>Yellowfever mosquito</common_name>
1157                                                     <synonym>Culex aegypti</synonym>
1158                                                     <rank>species</rank>
1159                                                     <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/4/48/Aedes_aegypti_biting_human.jpg/757px-Aedes_aegypti_biting_human.jpg</uri>
1160                                                   </taxonomy>
1161                                                 </clade>
1162                                                 <clade>
1163                                                   <taxonomy>
1164                                                     <id provider="uniprot">7165</id>
1165                                                     <code>ANOGA</code>
1166                                                     <scientific_name>Anopheles gambiae</scientific_name>
1167                                                     <common_name>African malaria mosquito</common_name>
1168                                                     <rank>species</rank>
1169                                                     <uri>http://upload.wikimedia.org/wikipedia/commons/e/e9/Anopheles_gambiae_Mosquito.jpg</uri>
1170                                                   </taxonomy>
1171                                                 </clade>
1172                                                 <clade>
1173                                                   <taxonomy>
1174                                                     <id provider="uniprot">7175</id>
1175                                                     <code>CULPI</code>
1176                                                     <scientific_name>Culex pipiens</scientific_name>
1177                                                     <common_name>House mosquito</common_name>
1178                                                     <rank>species</rank>
1179                                                     <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/3/35/Culex_pipiens_2007-1.jpg/628px-Culex_pipiens_2007-1.jpg</uri>
1180                                                   </taxonomy>
1181                                                 </clade>
1182                                               </clade>
1183                                               <clade>
1184                                                 <taxonomy>
1185                                                   <id provider="uniprot">32341</id>
1186                                                   <scientific_name>Sophophora</scientific_name>
1187                                                   <rank>subgenus</rank>
1188                                                 </taxonomy>
1189                                                 <clade>
1190                                                   <taxonomy>
1191                                                     <id provider="uniprot">7227</id>
1192                                                     <code>DROME</code>
1193                                                     <scientific_name>Drosophila melanogaster</scientific_name>
1194                                                     <common_name>Fruit fly</common_name>
1195                                                     <rank>species</rank>
1196                                                   </taxonomy>
1197                                                 </clade>
1198                                                 <clade>
1199                                                   <taxonomy>
1200                                                     <id provider="uniprot">46245</id>
1201                                                     <code>DROPS</code>
1202                                                     <scientific_name>Drosophila pseudoobscura pseudoobscura</scientific_name>
1203                                                     <common_name>Fruit fly</common_name>
1204                                                     <rank>subspecies</rank>
1205                                                   </taxonomy>
1206                                                 </clade>
1207                                               </clade>
1208                                             </clade>
1209                                             <clade>
1210                                               <taxonomy>
1211                                                 <id provider="uniprot">7091</id>
1212                                                 <code>BOMMO</code>
1213                                                 <scientific_name>Bombyx mori</scientific_name>
1214                                                 <common_name>Silk moth</common_name>
1215                                                 <rank>species</rank>
1216                                               </taxonomy>
1217                                             </clade>
1218                                           </clade>
1219                                           <clade>
1220                                             <taxonomy>
1221                                               <id provider="uniprot">7400</id>
1222                                               <scientific_name>Apocrita</scientific_name>
1223                                               <common_name>wasps, ants and bees</common_name>
1224                                             </taxonomy>
1225                                             <clade>
1226                                               <taxonomy>
1227                                                 <id provider="uniprot">7460</id>
1228                                                 <code>APIME</code>
1229                                                 <scientific_name>Apis mellifera</scientific_name>
1230                                                 <common_name>Honeybee</common_name>
1231                                                 <rank>species</rank>
1232                                               </taxonomy>
1233                                             </clade>
1234                                             <clade>
1235                                               <taxonomy>
1236                                                 <id provider="uniprot">7425</id>
1237                                                 <code>NASVI</code>
1238                                                 <scientific_name>Nasonia vitripennis</scientific_name>
1239                                                 <common_name>Parasitic wasp</common_name>
1240                                                 <rank>species</rank>
1241                                               </taxonomy>
1242                                             </clade>
1243                                           </clade>
1244                                         </clade>
1245                                         <clade>
1246                                           <taxonomy>
1247                                             <id provider="uniprot">7070</id>
1248                                             <code>TRICA</code>
1249                                             <scientific_name>Tribolium castaneum</scientific_name>
1250                                             <common_name>Red flour beetle</common_name>
1251                                             <rank>species</rank>
1252                                           </taxonomy>
1253                                         </clade>
1254                                       </clade>
1255                                       <clade>
1256                                         <taxonomy>
1257                                           <id provider="uniprot">7524</id>
1258                                           <scientific_name>Hemiptera</scientific_name>
1259                                           <rank>order</rank>
1260                                         </taxonomy>
1261                                         <clade>
1262                                           <taxonomy>
1263                                             <id provider="uniprot">7029</id>
1264                                             <code>ACYPI</code>
1265                                             <scientific_name>Acyrthosiphon pisum</scientific_name>
1266                                             <common_name>Pea aphid</common_name>
1267                                             <rank>species</rank>
1268                                           </taxonomy>
1269                                         </clade>
1270                                         <clade>
1271                                           <taxonomy>
1272                                             <id provider="uniprot">13249</id>
1273                                             <code>RHOPR</code>
1274                                             <scientific_name>Rhodnius prolixus</scientific_name>
1275                                             <common_name>Triatomid bug</common_name>
1276                                             <rank>species</rank>
1277                                             <uri>http://upload.wikimedia.org/wikipedia/commons/b/b9/Rhodnius_prolixus.jpg</uri>
1278                                           </taxonomy>
1279                                         </clade>
1280                                       </clade>
1281                                     </clade>
1282                                     <clade>
1283                                       <taxonomy>
1284                                         <id provider="uniprot">6658</id>
1285                                         <scientific_name>Branchiopoda</scientific_name>
1286                                         <rank>class</rank>
1287                                       </taxonomy>
1288                                       <clade>
1289                                         <taxonomy>
1290                                           <id provider="uniprot">6661</id>
1291                                           <code>ARTSF</code>
1292                                           <scientific_name>Artemia franciscana</scientific_name>
1293                                           <common_name>Brine shrimp</common_name>
1294                                           <synonym>Artemia sanfranciscana</synonym>
1295                                           <rank>species</rank>
1296                                           <uri>http://www.alireza-asem.ir/images/Artemia.jpg</uri>
1297                                         </taxonomy>
1298                                       </clade>
1299                                       <clade>
1300                                         <taxonomy>
1301                                           <id provider="uniprot">6669</id>
1302                                           <code>DAPPU</code>
1303                                           <scientific_name>Daphnia pulex</scientific_name>
1304                                           <common_name>Water flea</common_name>
1305                                           <rank>species</rank>
1306                                           <uri>http://www.microscopy-uk.org.uk/mag/imgjun99/daphni.jpg</uri>
1307                                         </taxonomy>
1308                                       </clade>
1309                                     </clade>
1310                                   </clade>
1311                                   <clade>
1312                                     <taxonomy>
1313                                       <id provider="uniprot">61985</id>
1314                                       <scientific_name>Myriapoda</scientific_name>
1315                                       <rank>subphylum</rank>
1316                                     </taxonomy>
1317                                     <clade>
1318                                       <taxonomy>
1319                                         <id provider="uniprot">7553</id>
1320                                         <scientific_name>Diplopoda</scientific_name>
1321                                         <common_name>millipedes</common_name>
1322                                         <rank>class</rank>
1323                                       </taxonomy>
1324                                       <clade>
1325                                         <taxonomy>
1326                                           <id provider="uniprot">118561</id>
1327                                           <scientific_name>Helminthomorpha</scientific_name>
1328                                           <rank>subclass</rank>
1329                                         </taxonomy>
1330                                         <clade>
1331                                           <taxonomy>
1332                                             <id provider="uniprot">364406</id>
1333                                             <scientific_name>Antrokoreana gracilipes</scientific_name>
1334                                             <rank>species</rank>
1335                                             <uri>http://www.gwbaekdu.com/data/2d/%EA%B3%A1%EC%84%9D%EA%B5%B4_4(%EB%93%B1%EC%A4%84%EA%B5%B4%EB%85%B8%EB%9E%98%EA%B8%B0).jpg</uri>
1336                                           </taxonomy>
1337                                         </clade>
1338                                         <clade>
1339                                           <taxonomy>
1340                                             <id provider="uniprot">174156</id>
1341                                             <code>NARAN</code>
1342                                             <scientific_name>Narceus annularis</scientific_name>
1343                                             <common_name>Millipede</common_name>
1344                                             <rank>species</rank>
1345                                             <uri>http://i.pbase.com/g4/59/68959/2/59864073.narceus0705062large.jpg</uri>
1346                                           </taxonomy>
1347                                         </clade>
1348                                       </clade>
1349                                       <clade>
1350                                         <taxonomy>
1351                                           <id provider="uniprot">52428</id>
1352                                           <scientific_name>Polyxenus lagurus</scientific_name>
1353                                           <common_name>bristly millipede</common_name>
1354                                           <rank>species</rank>
1355                                           <uri>http://upload.wikimedia.org/wikipedia/commons/5/54/Polyxenus.lagurus.1.jpg</uri>
1356                                         </taxonomy>
1357                                       </clade>
1358                                     </clade>
1359                                     <clade>
1360                                       <taxonomy>
1361                                         <id provider="uniprot">7540</id>
1362                                         <scientific_name>Chilopoda</scientific_name>
1363                                         <common_name>centipedes</common_name>
1364                                         <rank>class</rank>
1365                                       </taxonomy>
1366                                       <clade>
1367                                         <taxonomy>
1368                                           <id provider="uniprot">29022</id>
1369                                           <code>SCUCO</code>
1370                                           <scientific_name>Scutigera coleoptrata</scientific_name>
1371                                           <common_name>House centipede</common_name>
1372                                           <rank>species</rank>
1373                                           <uri>http://upload.wikimedia.org/wikipedia/commons/1/14/Scutigera_coleoptrata.JPG</uri>
1374                                         </taxonomy>
1375                                       </clade>
1376                                       <clade>
1377                                         <taxonomy>
1378                                           <id provider="uniprot">126957</id>
1379                                           <scientific_name>Strigamia maritima</scientific_name>
1380                                           <rank>species</rank>
1381                                           <uri>http://images.marinespecies.org/resized/22703_strigamia-maritima-male-loch-linnhe-scotland.jpg</uri>
1382                                         </taxonomy>
1383                                       </clade>
1384                                     </clade>
1385                                   </clade>
1386                                 </clade>
1387                                 <clade>
1388                                   <taxonomy>
1389                                     <id provider="uniprot">6945</id>
1390                                     <code>IXOSC</code>
1391                                     <scientific_name>Ixodes scapularis</scientific_name>
1392                                     <common_name>Black-legged tick</common_name>
1393                                     <synonym>Deer tick</synonym>
1394                                     <rank>species</rank>
1395                                     <uri>http://upload.wikimedia.org/wikipedia/commons/8/8c/Deertick.jpg</uri>
1396                                   </taxonomy>
1397                                 </clade>
1398                               </clade>
1399                               <clade>
1400                                 <taxonomy>
1401                                   <id provider="uniprot">119089</id>
1402                                   <scientific_name>Chromadorea</scientific_name>
1403                                   <rank>class</rank>
1404                                 </taxonomy>
1405                                 <reference doi="10.1038/32160">
1406                                 </reference>
1407                                 <clade>
1408                                   <name>nematode Clade V</name>
1409                                   <clade>
1410                                     <name>Caenorhabditis</name>
1411                                     <taxonomy>
1412                                       <id provider="uniprot">6237</id>
1413                                       <scientific_name>Caenorhabditis</scientific_name>
1414                                       <rank>genus</rank>
1415                                     </taxonomy>
1416                                     <clade>
1417                                       <taxonomy>
1418                                         <id provider="uniprot">6238</id>
1419                                         <code>CAEBR</code>
1420                                         <scientific_name>Caenorhabditis briggsae</scientific_name>
1421                                         <rank>species</rank>
1422                                       </taxonomy>
1423                                     </clade>
1424                                     <clade>
1425                                       <taxonomy>
1426                                         <id provider="uniprot">6239</id>
1427                                         <code>CAEEL</code>
1428                                         <scientific_name>Caenorhabditis elegans</scientific_name>
1429                                         <rank>species</rank>
1430                                       </taxonomy>
1431                                     </clade>
1432                                   </clade>
1433                                   <clade>
1434                                     <taxonomy>
1435                                       <id provider="uniprot">54126</id>
1436                                       <code>PRIPA</code>
1437                                       <scientific_name>Pristionchus pacificus</scientific_name>
1438                                       <rank>species</rank>
1439                                     </taxonomy>
1440                                   </clade>
1441                                 </clade>
1442                                 <clade>
1443                                   <taxonomy>
1444                                     <id provider="uniprot">6279</id>
1445                                     <code>BRUMA</code>
1446                                     <scientific_name>Brugia malayi</scientific_name>
1447                                     <common_name>Filarial nematode worm</common_name>
1448                                     <rank>species</rank>
1449                                   </taxonomy>
1450                                 </clade>
1451                               </clade>
1452                             </clade>
1453                             <clade>
1454                               <name>Lophotrochozoa</name>
1455                               <clade>
1456                                 <name>Annelida &amp; Mollusca</name>
1457                                 <clade>
1458                                   <taxonomy>
1459                                     <id provider="uniprot">6340</id>
1460                                     <scientific_name>Annelida</scientific_name>
1461                                     <rank>phylum</rank>
1462                                   </taxonomy>
1463                                   <clade>
1464                                     <name>CAP</name>
1465                                     <taxonomy>
1466                                       <id provider="uniprot">283909</id>
1467                                       <scientific_name>Capitella teleta</scientific_name>
1468                                       <rank>species</rank>
1469                                     </taxonomy>
1470                                   </clade>
1471                                   <clade>
1472                                     <taxonomy>
1473                                       <id provider="uniprot">6412</id>
1474                                       <code>HELRO</code>
1475                                       <scientific_name>Helobdella robusta</scientific_name>
1476                                       <common_name>Californian leech</common_name>
1477                                       <rank>species</rank>
1478                                     </taxonomy>
1479                                   </clade>
1480                                 </clade>
1481                                 <clade>
1482                                   <taxonomy>
1483                                     <id provider="uniprot">225164</id>
1484                                     <code>LOTGI</code>
1485                                     <scientific_name>Lottia gigantea</scientific_name>
1486                                     <common_name>Owl limpet</common_name>
1487                                     <rank>species</rank>
1488                                   </taxonomy>
1489                                 </clade>
1490                               </clade>
1491                               <clade>
1492                                 <taxonomy>
1493                                   <id provider="uniprot">6157</id>
1494                                   <scientific_name>Platyhelminthes</scientific_name>
1495                                   <rank>phylum</rank>
1496                                 </taxonomy>
1497                                 <clade>
1498                                   <taxonomy>
1499                                     <id provider="uniprot">6183</id>
1500                                     <code>SCHMA</code>
1501                                     <scientific_name>Schistosoma mansoni</scientific_name>
1502                                     <common_name>Blood fluke</common_name>
1503                                     <rank>species</rank>
1504                                   </taxonomy>
1505                                 </clade>
1506                                 <clade>
1507                                   <taxonomy>
1508                                     <id provider="uniprot">79327</id>
1509                                     <code>SCHMD</code>
1510                                     <scientific_name>Schmidtea mediterranea</scientific_name>
1511                                     <common_name>Freshwater planarian flatworm</common_name>
1512                                     <rank>species</rank>
1513                                   </taxonomy>
1514                                 </clade>
1515                               </clade>
1516                             </clade>
1517                           </clade>
1518                         </clade>
1519                         <clade>
1520                           <name>Cnidaria</name>
1521                           <taxonomy>
1522                             <id provider="uniprot">6073</id>
1523                             <scientific_name>Cnidaria</scientific_name>
1524                             <rank>phylum</rank>
1525                           </taxonomy>
1526                           <clade>
1527                             <taxonomy>
1528                               <id provider="uniprot">6102</id>
1529                               <scientific_name>Hexacorallia</scientific_name>
1530                               <synonym>Ceriantipatharia</synonym>
1531                               <synonym>Zoantharia</synonym>
1532                               <rank>subclass</rank>
1533                             </taxonomy>
1534                             <clade>
1535                               <taxonomy>
1536                                 <id provider="uniprot">45351</id>
1537                                 <code>NEMVE</code>
1538                                 <scientific_name>Nematostella vectensis</scientific_name>
1539                                 <common_name>Starlet sea anemone</common_name>
1540                                 <rank>species</rank>
1541                               </taxonomy>
1542                             </clade>
1543                             <clade>
1544                               <taxonomy>
1545                                 <id provider="uniprot">70779</id>
1546                                 <code>ACRDI</code>
1547                                 <scientific_name>Acropora digitifera</scientific_name>
1548                                 <common_name>Staghorn coral</common_name>
1549                                 <rank>species</rank>
1550                                 <uri>http://www.botany.hawaii.edu/basch/uhnpscesu/htms/NPSAcorl/images/acropori/acrdigitif7.jpg</uri>
1551                               </taxonomy>
1552                             </clade>
1553                           </clade>
1554                           <clade>
1555                             <taxonomy>
1556                               <id provider="eol">9119928</id>
1557                               <code>HYDMA</code>
1558                               <scientific_name>Hydra magnipapillata</scientific_name>
1559                               <authority>Ito, 1947</authority>
1560                               <rank>species</rank>
1561                               <uri>http://www.nig.ac.jp/labs/OntoGen/magni.html</uri>
1562                             </taxonomy>
1563                           </clade>
1564                         </clade>
1565                       </clade>
1566                       <clade>
1567                         <taxonomy>
1568                           <id provider="uniprot">10228</id>
1569                           <code>TRIAD</code>
1570                           <scientific_name>Trichoplax adhaerens</scientific_name>
1571                           <synonym>Trichoplax reptans</synonym>
1572                           <rank>species</rank>
1573                         </taxonomy>
1574                         <reference doi="10.1073/pnas.0602076103">
1575                         </reference>
1576                       </clade>
1577                     </clade>
1578                     <clade>
1579                       <taxonomy>
1580                         <id provider="uniprot">400682</id>
1581                         <code>AMPQU</code>
1582                         <scientific_name>Amphimedon queenslandica</scientific_name>
1583                         <rank>species</rank>
1584                       </taxonomy>
1585                     </clade>
1586                   </clade>
1587                   <clade>
1588                     <taxonomy>
1589                       <id provider="uniprot">81524</id>
1590                       <scientific_name>Codonosigidae</scientific_name>
1591                       <rank>family</rank>
1592                     </taxonomy>
1593                     <clade>
1594                       <taxonomy>
1595                         <id provider="uniprot">81824</id>
1596                         <code>MONBE</code>
1597                         <scientific_name>Monosiga brevicollis</scientific_name>
1598                         <common_name>Choanoflagellate</common_name>
1599                         <rank>species</rank>
1600                       </taxonomy>
1601                     </clade>
1602                     <clade>
1603                       <taxonomy>
1604                         <id provider="uniprot">946362</id>
1605                         <code>SALS5</code>
1606                         <scientific_name>Salpingoeca rosetta</scientific_name>
1607                         <synonym>Proterospongia sp. ATCC 50818</synonym>
1608                         <synonym>Salpingoeca sp. ATCC 50818</synonym>
1609                         <rank>species</rank>
1610                       </taxonomy>
1611                     </clade>
1612                   </clade>
1613                 </clade>
1614                 <clade>
1615                   <name>Ichthyophonida &amp; Filasterea</name>
1616                   <clade>
1617                     <taxonomy>
1618                       <id provider="uniprot">198625</id>
1619                       <scientific_name>Ichthyophonida</scientific_name>
1620                       <rank>order</rank>
1621                     </taxonomy>
1622                     <clade>
1623                       <taxonomy>
1624                         <id provider="uniprot">4881</id>
1625                         <code>AMOPA</code>
1626                         <scientific_name>Amoebidium parasiticum</scientific_name>
1627                         <rank>species</rank>
1628                         <uri>http://www.diark.org/img/species_pict/Amoebidium_parasiticum</uri>
1629                       </taxonomy>
1630                     </clade>
1631                     <clade>
1632                       <name>SPHARC</name>
1633                       <taxonomy>
1634                         <id provider="uniprot">72019</id>
1635                         <scientific_name>Sphaeroforma arctica</scientific_name>
1636                         <rank>species</rank>
1637                         <uri>http://www.sciencedirect.com/cache/MiamiImageURL/1-s2.0-S0168952507000236-gr2.jpg</uri>
1638                       </taxonomy>
1639                     </clade>
1640                   </clade>
1641                   <clade>
1642                     <taxonomy>
1643                       <scientific_name>Filasterea</scientific_name>
1644                     </taxonomy>
1645                     <reference doi="10.1371/journal.pone.0002098">
1646                     </reference>
1647                     <reference>
1648                     </reference>
1649                     <clade>
1650                       <name>CAPOWC</name>
1651                       <taxonomy>
1652                         <id provider="uniprot">192875</id>
1653                         <scientific_name>Capsaspora owczarzaki</scientific_name>
1654                         <rank>species</rank>
1655                       </taxonomy>
1656                     </clade>
1657                     <clade>
1658                       <name>MINVIB</name>
1659                       <taxonomy>
1660                         <id provider="uniprot">134558</id>
1661                         <scientific_name>Ministeria vibrans</scientific_name>
1662                         <rank>species</rank>
1663                       </taxonomy>
1664                     </clade>
1665                   </clade>
1666                 </clade>
1667               </clade>
1668               <clade>
1669                 <taxonomy>
1670                   <scientific_name>Holomycota</scientific_name>
1671                   <synonym>Nucletmycea</synonym>
1672                 </taxonomy>
1673                 <clade>
1674                   <taxonomy>
1675                     <id provider="uniprot">4751</id>
1676                     <scientific_name>Fungi</scientific_name>
1677                     <rank>kingdom</rank>
1678                   </taxonomy>
1679                   <clade>
1680                     <name>Dikarya &amp; Mucoromycotina &amp; Kickxellomycotina &amp; Blastocladiomycota &amp; Chytridiomycota &amp; Neocallimastigomycota</name>
1681                     <clade>
1682                       <name>Dikarya &amp; Mucoromycotina &amp; Kickxellomycotina &amp; Blastocladiomycota &amp; Chytridiomycota</name>
1683                       <clade>
1684                         <name>Dikarya &amp; Mucoromycotina &amp; Kickxellomycotina &amp; Blastocladiomycota</name>
1685                         <clade>
1686                           <name>Dikarya &amp; Mucoromycotina &amp; Kickxellomycotina</name>
1687                           <clade>
1688                             <name>Dikarya &amp; Mucoromycotina</name>
1689                             <clade>
1690                               <taxonomy>
1691                                 <id provider="uniprot">451864</id>
1692                                 <scientific_name>Dikarya</scientific_name>
1693                                 <rank>subkingdom</rank>
1694                               </taxonomy>
1695                               <reference doi="10.1038/nature05110">
1696                               </reference>
1697                               <reference>
1698                               </reference>
1699                               <clade>
1700                                 <taxonomy>
1701                                   <id provider="uniprot">4890</id>
1702                                   <scientific_name>Ascomycota</scientific_name>
1703                                   <rank>phylum</rank>
1704                                 </taxonomy>
1705                                 <clade>
1706                                   <name>Pezizomycotina_Saccharomycetales</name>
1707                                   <clade>
1708                                     <taxonomy>
1709                                       <id provider="uniprot">147538</id>
1710                                       <scientific_name>Pezizomycotina</scientific_name>
1711                                       <synonym>Euascomycota</synonym>
1712                                       <rank>subphylum</rank>
1713                                     </taxonomy>
1714                                     <reference doi="0.3852/mycologia.98.6.1018">
1715                                       <desc>A five-gene phylogeny of Pezizomycotina</desc>
1716                                     </reference>
1717                                     <reference>
1718                                     </reference>
1719                                     <clade>
1720                                       <taxonomy>
1721                                         <id provider="uniprot">716546</id>
1722                                         <scientific_name>Leotiomyceta</scientific_name>
1723                                       </taxonomy>
1724                                       <clade>
1725                                         <name>Sordariomyceta &amp; Dothideomycetes &amp; Trichocomaceae &amp; Lecanoromycetes</name>
1726                                         <clade>
1727                                           <name>Sordariomyceta &amp; Dothideomycetes &amp; Lecanoromycetes</name>
1728                                           <clade>
1729                                             <name>Sordariomyceta &amp; Lecanoromycetes</name>
1730                                             <clade>
1731                                               <taxonomy>
1732                                                 <id provider="uniprot">715989</id>
1733                                                 <scientific_name>Sordariomyceta</scientific_name>
1734                                               </taxonomy>
1735                                               <clade>
1736                                                 <taxonomy>
1737                                                   <id provider="uniprot">147550</id>
1738                                                   <scientific_name>Sordariomycetes</scientific_name>
1739                                                   <rank>class</rank>
1740                                                 </taxonomy>
1741                                                 <clade>
1742                                                   <name>Magnaporthales &amp; Hypocreales</name>
1743                                                   <clade>
1744                                                     <taxonomy>
1745                                                       <id provider="uniprot">5125</id>
1746                                                       <scientific_name>Hypocreales</scientific_name>
1747                                                       <rank>order</rank>
1748                                                     </taxonomy>
1749                                                     <clade>
1750                                                       <name>ACRALC</name>
1751                                                       <taxonomy>
1752                                                         <id provider="uniprot">398408</id>
1753                                                         <scientific_name>Acremonium alcalophilum</scientific_name>
1754                                                         <rank>species</rank>
1755                                                         <uri>http://genome.jgi-psf.org/public/Acral1_c3a/Acral1.jpg</uri>
1756                                                       </taxonomy>
1757                                                     </clade>
1758                                                     <clade>
1759                                                       <taxonomy>
1760                                                         <id provider="uniprot">5518</id>
1761                                                         <code>GIBZE</code>
1762                                                         <scientific_name>Gibberella zeae</scientific_name>
1763                                                         <common_name>Wheat head blight fungus</common_name>
1764                                                         <synonym>Fusarium graminearum</synonym>
1765                                                         <rank>species</rank>
1766                                                       </taxonomy>
1767                                                     </clade>
1768                                                     <clade>
1769                                                       <taxonomy>
1770                                                         <id provider="uniprot">29875</id>
1771                                                         <code>TRIVE</code>
1772                                                         <scientific_name>Trichoderma virens</scientific_name>
1773                                                         <common_name>Gliocladium virens</common_name>
1774                                                         <synonym>Trichoderma virens</synonym>
1775                                                         <rank>species</rank>
1776                                                       </taxonomy>
1777                                                     </clade>
1778                                                   </clade>
1779                                                   <clade>
1780                                                     <taxonomy>
1781                                                       <id provider="uniprot">148305</id>
1782                                                       <code>MAGGR</code>
1783                                                       <scientific_name>Magnaporthe grisea</scientific_name>
1784                                                       <common_name>Rice blast fungus</common_name>
1785                                                       <synonym>Pyricularia grisea</synonym>
1786                                                       <rank>species</rank>
1787                                                     </taxonomy>
1788                                                   </clade>
1789                                                 </clade>
1790                                                 <clade>
1791                                                   <taxonomy>
1792                                                     <id provider="uniprot">5139</id>
1793                                                     <scientific_name>Sordariales</scientific_name>
1794                                                     <rank>order</rank>
1795                                                   </taxonomy>
1796                                                   <clade>
1797                                                     <taxonomy>
1798                                                       <id provider="uniprot">35718</id>
1799                                                       <scientific_name>Chaetomiaceae</scientific_name>
1800                                                       <rank>family</rank>
1801                                                     </taxonomy>
1802                                                     <clade>
1803                                                       <taxonomy>
1804                                                         <id provider="uniprot">35719</id>
1805                                                         <scientific_name>Thielavia</scientific_name>
1806                                                         <rank>genus</rank>
1807                                                       </taxonomy>
1808                                                       <clade>
1809                                                         <name>MYCTHE</name>
1810                                                         <taxonomy>
1811                                                           <id provider="uniprot">573728</id>
1812                                                           <scientific_name>Myceliophthora thermophila</scientific_name>
1813                                                           <authority>(Apinis) Oorschot 1977</authority>
1814                                                           <synonym>Sporotrichum thermophilum</synonym>
1815                                                           <synonym>anamorph of Thielavia heterothallica</synonym>
1816                                                           <rank>species</rank>
1817                                                           <uri>http://genome.jgi-psf.org/public/Spoth2/Spoth0.jpg</uri>
1818                                                         </taxonomy>
1819                                                       </clade>
1820                                                       <clade>
1821                                                         <name>THITER</name>
1822                                                         <taxonomy>
1823                                                           <id provider="eol">193532</id>
1824                                                           <scientific_name>Thielavia terrestris</scientific_name>
1825                                                           <authority>Malloch &amp; Cain 1972</authority>
1826                                                           <synonym>Acremonium alabamense</synonym>
1827                                                           <rank>species</rank>
1828                                                           <uri>http://genome.jgi-psf.org/public/Thite2/Thite1.jpg</uri>
1829                                                         </taxonomy>
1830                                                       </clade>
1831                                                     </clade>
1832                                                     <clade>
1833                                                       <taxonomy>
1834                                                         <id provider="eol">1029505</id>
1835                                                         <code>CHAGB</code>
1836                                                         <scientific_name>Chaetomium globosum</scientific_name>
1837                                                         <authority>Kunze 1817</authority>
1838                                                         <common_name>Soil fungus</common_name>
1839                                                         <rank>species</rank>
1840                                                       </taxonomy>
1841                                                     </clade>
1842                                                   </clade>
1843                                                   <clade>
1844                                                     <taxonomy>
1845                                                       <id provider="uniprot">5141</id>
1846                                                       <code>NEUCR</code>
1847                                                       <scientific_name>Neurospora crassa</scientific_name>
1848                                                       <rank>species</rank>
1849                                                     </taxonomy>
1850                                                   </clade>
1851                                                 </clade>
1852                                               </clade>
1853                                               <clade>
1854                                                 <taxonomy>
1855                                                   <id provider="uniprot">147548</id>
1856                                                   <scientific_name>Leotiomycetes</scientific_name>
1857                                                   <rank>class</rank>
1858                                                 </taxonomy>
1859                                                 <clade>
1860                                                   <taxonomy>
1861                                                     <id provider="uniprot">28983</id>
1862                                                     <scientific_name>Sclerotiniaceae</scientific_name>
1863                                                     <rank>family</rank>
1864                                                   </taxonomy>
1865                                                   <clade>
1866                                                     <taxonomy>
1867                                                       <id provider="uniprot">40559</id>
1868                                                       <code>BOTFU</code>
1869                                                       <scientific_name>Botryotinia fuckeliana</scientific_name>
1870                                                       <common_name>Noble rot fungus</common_name>
1871                                                       <synonym>Botrytis cinerea</synonym>
1872                                                       <rank>species</rank>
1873                                                     </taxonomy>
1874                                                   </clade>
1875                                                   <clade>
1876                                                     <taxonomy>
1877                                                       <id provider="uniprot">5180</id>
1878                                                       <code>SCLSC</code>
1879                                                       <scientific_name>Sclerotinia sclerotiorum</scientific_name>
1880                                                       <common_name>White mold</common_name>
1881                                                       <synonym>Whetzelinia sclerotiorum</synonym>
1882                                                       <rank>species</rank>
1883                                                     </taxonomy>
1884                                                   </clade>
1885                                                 </clade>
1886                                                 <clade>
1887                                                   <name>OIDMAI</name>
1888                                                   <taxonomy>
1889                                                     <id provider="uniprot">78148</id>
1890                                                     <scientific_name>Oidiodendron maius</scientific_name>
1891                                                     <rank>species</rank>
1892                                                   </taxonomy>
1893                                                 </clade>
1894                                               </clade>
1895                                             </clade>
1896                                             <clade>
1897                                               <taxonomy>
1898                                                 <id provider="uniprot">388435</id>
1899                                                 <scientific_name>Lecanoromycetidae</scientific_name>
1900                                                 <rank>subclass</rank>
1901                                               </taxonomy>
1902                                               <clade>
1903                                                 <name>CLAGRA</name>
1904                                                 <taxonomy>
1905                                                   <id provider="uniprot">27339</id>
1906                                                   <scientific_name>Cladonia grayi</scientific_name>
1907                                                   <synonym>Cladonia grayi Merr</synonym>
1908                                                   <rank>species</rank>
1909                                                   <uri>http://upload.wikimedia.org/wikipedia/commons/b/b6/Cladonia_grayi-11.jpg</uri>
1910                                                 </taxonomy>
1911                                               </clade>
1912                                               <clade>
1913                                                 <name>XANPAR</name>
1914                                                 <taxonomy>
1915                                                   <id provider="uniprot">107463</id>
1916                                                   <scientific_name>Xanthoria parietina</scientific_name>
1917                                                   <rank>species</rank>
1918                                                   <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/7/70/Xanthoria_parietina_%2806_03_31%29.jpg/800px-Xanthoria_parietina_%2806_03_31%29.jpg</uri>
1919                                                 </taxonomy>
1920                                               </clade>
1921                                             </clade>
1922                                           </clade>
1923                                           <clade>
1924                                             <taxonomy>
1925                                               <id provider="uniprot">147541</id>
1926                                               <scientific_name>Dothideomycetes</scientific_name>
1927                                               <rank>class</rank>
1928                                             </taxonomy>
1929                                             <reference doi="10.3114/sim.2009.64.01">
1930                                               <desc>A class-wide phylogenetic assessment of Dothideomycetes</desc>
1931                                             </reference>
1932                                             <clade>
1933                                               <taxonomy>
1934                                                 <id provider="uniprot">134362</id>
1935                                                 <scientific_name>Capnodiales</scientific_name>
1936                                                 <rank>order</rank>
1937                                               </taxonomy>
1938                                               <clade>
1939                                                 <taxonomy>
1940                                                   <id provider="uniprot">41254</id>
1941                                                   <scientific_name>Mycosphaerella</scientific_name>
1942                                                   <rank>genus</rank>
1943                                                 </taxonomy>
1944                                                 <clade>
1945                                                   <name>MYCFI</name>
1946                                                   <taxonomy>
1947                                                     <id provider="uniprot">83344</id>
1948                                                     <scientific_name>Mycosphaerella fijiensis</scientific_name>
1949                                                     <rank>species</rank>
1950                                                   </taxonomy>
1951                                                 </clade>
1952                                                 <clade>
1953                                                   <taxonomy>
1954                                                     <id provider="uniprot">54734</id>
1955                                                     <code>MYCGR</code>
1956                                                     <scientific_name>Mycosphaerella graminicola</scientific_name>
1957                                                     <common_name>Speckled leaf blotch fungus</common_name>
1958                                                     <synonym>Septoria tritici</synonym>
1959                                                     <rank>species</rank>
1960                                                   </taxonomy>
1961                                                 </clade>
1962                                                 <clade>
1963                                                   <taxonomy>
1964                                                     <id provider="uniprot">64363</id>
1965                                                     <code>MYCPJ</code>
1966                                                     <scientific_name>Mycosphaerella pini</scientific_name>
1967                                                     <common_name>Red band needle blight disease fungus</common_name>
1968                                                     <synonym>Dothistroma septosporum</synonym>
1969                                                     <synonym>Dothistroma pini</synonym>
1970                                                     <rank>species</rank>
1971                                                   </taxonomy>
1972                                                 </clade>
1973                                                 <clade>
1974                                                   <name>MYCPOP</name>
1975                                                   <taxonomy>
1976                                                     <id provider="uniprot">85929</id>
1977                                                     <scientific_name>Mycosphaerella populorum</scientific_name>
1978                                                     <synonym>Septoria musiva</synonym>
1979                                                     <rank>species</rank>
1980                                                   </taxonomy>
1981                                                 </clade>
1982                                               </clade>
1983                                               <clade>
1984                                                 <name>BAUCOM</name>
1985                                                 <taxonomy>
1986                                                   <id provider="uniprot">430998</id>
1987                                                   <scientific_name>Baudoinia compniacensis</scientific_name>
1988                                                   <rank>species</rank>
1989                                                   <uri>http://www.diark.org/img/species_pict/Baudoinia_compniacensis</uri>
1990                                                 </taxonomy>
1991                                               </clade>
1992                                             </clade>
1993                                             <clade>
1994                                               <taxonomy>
1995                                                 <id provider="uniprot">715340</id>
1996                                                 <scientific_name>Pleosporineae</scientific_name>
1997                                                 <rank>suborder</rank>
1998                                               </taxonomy>
1999                                               <clade>
2000                                                 <taxonomy>
2001                                                   <id provider="uniprot">28556</id>
2002                                                   <scientific_name>Pleosporaceae</scientific_name>
2003                                                   <rank>family</rank>
2004                                                 </taxonomy>
2005                                                 <clade>
2006                                                   <name>Cochliobolus &amp; Setosphaeria</name>
2007                                                   <clade>
2008                                                     <taxonomy>
2009                                                       <id provider="uniprot">5015</id>
2010                                                       <scientific_name>Cochliobolus</scientific_name>
2011                                                       <rank>genus</rank>
2012                                                     </taxonomy>
2013                                                     <clade>
2014                                                       <taxonomy>
2015                                                         <id provider="uniprot">5016</id>
2016                                                         <code>COCHE</code>
2017                                                         <scientific_name>Cochliobolus heterostrophus</scientific_name>
2018                                                         <synonym>Drechslera maydis</synonym>
2019                                                         <rank>species</rank>
2020                                                       </taxonomy>
2021                                                     </clade>
2022                                                     <clade>
2023                                                       <taxonomy>
2024                                                         <id provider="uniprot">45130</id>
2025                                                         <code>COCSA</code>
2026                                                         <scientific_name>Cochliobolus sativus</scientific_name>
2027                                                         <synonym>Bipolaris sorokiniana</synonym>
2028                                                         <rank>species</rank>
2029                                                         <uri>http://www.plantmanagementnetwork.org/pub/php/diagnosticguide/2003/rootrot/image/mathre6sm.jpg</uri>
2030                                                       </taxonomy>
2031                                                     </clade>
2032                                                   </clade>
2033                                                   <clade>
2034                                                     <taxonomy>
2035                                                       <id provider="uniprot">93612</id>
2036                                                       <code>SETTU</code>
2037                                                       <scientific_name>Setosphaeria turcica</scientific_name>
2038                                                       <authority>(Luttr.) K.J. Leonard &amp; Suggs, (1974)</authority>
2039                                                       <common_name>Northern corn leaf blight disease fungus</common_name>
2040                                                       <synonym>Exserohilum turcicum</synonym>
2041                                                       <synonym>Helminthosporium turcicum</synonym>
2042                                                       <rank>species</rank>
2043                                                       <uri>http://www.pflanzenkrankheiten.ch/diseases/STU/figures_STU/HTU_Mais_Mik_7_k.jpg</uri>
2044                                                       <uri>http://www.pflanzenkrankheiten.ch/diseases/STU/figures_STU/Exserohilum_turcicum_001_k.jpg</uri>
2045                                                     </taxonomy>
2046                                                   </clade>
2047                                                 </clade>
2048                                                 <clade>
2049                                                   <taxonomy>
2050                                                     <id provider="uniprot">426418</id>
2051                                                     <code>PYRTR</code>
2052                                                     <scientific_name>Pyrenophora tritici-repentis (strain Pt-1C-BFP)</scientific_name>
2053                                                     <common_name>Wheat tan spot fungus</common_name>
2054                                                     <synonym>Drechslera tritici-repentis</synonym>
2055                                                   </taxonomy>
2056                                                 </clade>
2057                                               </clade>
2058                                               <clade>
2059                                                 <taxonomy>
2060                                                   <id provider="uniprot">13684</id>
2061                                                   <code>PHANO</code>
2062                                                   <scientific_name>Phaeosphaeria nodorum</scientific_name>
2063                                                   <common_name>Glume blotch fungus</common_name>
2064                                                   <synonym>Septoria nodorum</synonym>
2065                                                   <rank>species</rank>
2066                                                 </taxonomy>
2067                                               </clade>
2068                                             </clade>
2069                                           </clade>
2070                                         </clade>
2071                                         <clade>
2072                                           <taxonomy>
2073                                             <id provider="uniprot">28568</id>
2074                                             <scientific_name>Trichocomaceae</scientific_name>
2075                                             <rank>family</rank>
2076                                           </taxonomy>
2077                                           <clade>
2078                                             <name>Neosartorya_Emericella</name>
2079                                             <clade>
2080                                               <taxonomy>
2081                                                 <id provider="eol">195546</id>
2082                                                 <code>EMENI</code>
2083                                                 <scientific_name>Emericella nidulans</scientific_name>
2084                                                 <authority>Vuill. 1927</authority>
2085                                                 <synonym>Aspergillus nidulans</synonym>
2086                                                 <rank>species</rank>
2087                                               </taxonomy>
2088                                             </clade>
2089                                             <clade>
2090                                               <taxonomy>
2091                                                 <id provider="uniprot">331117</id>
2092                                                 <code>NEOFI</code>
2093                                                 <scientific_name>Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181)</scientific_name>
2094                                                 <synonym>Aspergillus fischerianus</synonym>
2095                                               </taxonomy>
2096                                             </clade>
2097                                           </clade>
2098                                           <clade>
2099                                             <taxonomy>
2100                                               <id provider="uniprot">5052</id>
2101                                               <scientific_name>Aspergillus</scientific_name>
2102                                               <rank>genus</rank>
2103                                             </taxonomy>
2104                                             <clade>
2105                                               <taxonomy>
2106                                                 <id provider="uniprot">5059</id>
2107                                                 <code>ASPFL</code>
2108                                                 <scientific_name>Aspergillus flavus</scientific_name>
2109                                                 <rank>species</rank>
2110                                               </taxonomy>
2111                                             </clade>
2112                                             <clade>
2113                                               <taxonomy>
2114                                                 <id provider="uniprot">5061</id>
2115                                                 <code>ASPNG</code>
2116                                                 <scientific_name>Aspergillus niger</scientific_name>
2117                                                 <rank>species</rank>
2118                                               </taxonomy>
2119                                             </clade>
2120                                           </clade>
2121                                         </clade>
2122                                       </clade>
2123                                       <clade>
2124                                         <taxonomy>
2125                                           <id provider="uniprot">33183</id>
2126                                           <scientific_name>Onygenales</scientific_name>
2127                                           <rank>order</rank>
2128                                         </taxonomy>
2129                                         <clade>
2130                                           <taxonomy>
2131                                             <id provider="uniprot">5501</id>
2132                                             <code>COCIM</code>
2133                                             <scientific_name>Coccidioides immitis</scientific_name>
2134                                             <common_name>Valley fever fungus</common_name>
2135                                             <rank>species</rank>
2136                                           </taxonomy>
2137                                         </clade>
2138                                         <clade>
2139                                           <taxonomy>
2140                                             <id provider="uniprot">336963</id>
2141                                             <code>UNCRE</code>
2142                                             <scientific_name>Uncinocarpus reesii (strain UAMH 1704)</scientific_name>
2143                                           </taxonomy>
2144                                         </clade>
2145                                       </clade>
2146                                     </clade>
2147                                     <clade>
2148                                       <taxonomy>
2149                                         <id provider="uniprot">656061</id>
2150                                         <code>TUBMM</code>
2151                                         <scientific_name>Tuber melanosporum (strain Mel28)</scientific_name>
2152                                         <common_name>Perigord black truffle</common_name>
2153                                         <synonym>Tuber melanosporum Mel28</synonym>
2154                                         <uri>http://www.gmvmonza.org/images%20parco/Tuber%20melanosporum%20p106.jpg</uri>
2155                                       </taxonomy>
2156                                     </clade>
2157                                   </clade>
2158                                   <clade>
2159                                     <taxonomy>
2160                                       <id provider="uniprot">4892</id>
2161                                       <scientific_name>Saccharomycetales</scientific_name>
2162                                       <common_name>budding yeasts</common_name>
2163                                       <rank>order</rank>
2164                                     </taxonomy>
2165                                     <clade>
2166                                       <name>Candida &amp; Debaryomyces &amp; Saccharomycetacea</name>
2167                                       <clade>
2168                                         <taxonomy>
2169                                           <id provider="uniprot">4893</id>
2170                                           <scientific_name>Saccharomycetaceae</scientific_name>
2171                                           <rank>family</rank>
2172                                         </taxonomy>
2173                                         <clade>
2174                                           <name>Saccharomyces_Pichia</name>
2175                                           <clade>
2176                                             <name>Saccharomyces</name>
2177                                             <clade>
2178                                               <taxonomy>
2179                                                 <id provider="uniprot">27288</id>
2180                                                 <code>SACCA</code>
2181                                                 <scientific_name>Saccharomyces castellii</scientific_name>
2182                                                 <common_name>Yeast</common_name>
2183                                                 <synonym>Saccharomyces castellii</synonym>
2184                                                 <rank>species</rank>
2185                                               </taxonomy>
2186                                             </clade>
2187                                             <clade>
2188                                               <taxonomy>
2189                                                 <id provider="uniprot">4932</id>
2190                                                 <code>YEAST</code>
2191                                                 <scientific_name>Saccharomyces cerevisiae</scientific_name>
2192                                                 <common_name>Baker&apos;s yeast</common_name>
2193                                                 <rank>species</rank>
2194                                               </taxonomy>
2195                                             </clade>
2196                                           </clade>
2197                                           <clade>
2198                                             <taxonomy>
2199                                               <id provider="uniprot">4905</id>
2200                                               <code>PICAN</code>
2201                                               <scientific_name>Pichia angusta</scientific_name>
2202                                               <common_name>Yeast</common_name>
2203                                               <synonym>Hansenula polymorpha</synonym>
2204                                               <rank>species</rank>
2205                                             </taxonomy>
2206                                           </clade>
2207                                         </clade>
2208                                         <clade>
2209                                           <name>Kluyveromyces &amp; Ashbya</name>
2210                                           <clade>
2211                                             <name>Kluyveromyces</name>
2212                                             <clade>
2213                                               <taxonomy>
2214                                                 <id provider="uniprot">28985</id>
2215                                                 <code>KLULA</code>
2216                                                 <scientific_name>Kluyveromyces lactis</scientific_name>
2217                                                 <common_name>Yeast</common_name>
2218                                                 <synonym>Candida sphaerica</synonym>
2219                                                 <rank>species</rank>
2220                                               </taxonomy>
2221                                             </clade>
2222                                             <clade>
2223                                               <taxonomy>
2224                                                 <id provider="uniprot">4914</id>
2225                                                 <code>KLUWA</code>
2226                                                 <scientific_name>Kluyveromyces waltii</scientific_name>
2227                                                 <common_name>Yeast</common_name>
2228                                                 <rank>species</rank>
2229                                               </taxonomy>
2230                                             </clade>
2231                                           </clade>
2232                                           <clade>
2233                                             <taxonomy>
2234                                               <id provider="uniprot">33169</id>
2235                                               <code>ASHGO</code>
2236                                               <scientific_name>Ashbya gossypii</scientific_name>
2237                                               <common_name>Yeast</common_name>
2238                                               <synonym>Eremothecium gossypii</synonym>
2239                                               <rank>species</rank>
2240                                             </taxonomy>
2241                                           </clade>
2242                                         </clade>
2243                                       </clade>
2244                                       <clade>
2245                                         <name>Candida &amp; Debaryomyces</name>
2246                                         <clade>
2247                                           <taxonomy>
2248                                             <id provider="uniprot">5475</id>
2249                                             <scientific_name>Candida</scientific_name>
2250                                             <rank>genus</rank>
2251                                           </taxonomy>
2252                                           <clade>
2253                                             <taxonomy>
2254                                               <id provider="uniprot">5476</id>
2255                                               <code>CANAL</code>
2256                                               <scientific_name>Candida albicans</scientific_name>
2257                                               <common_name>Yeast</common_name>
2258                                               <rank>species</rank>
2259                                             </taxonomy>
2260                                           </clade>
2261                                           <clade>
2262                                             <taxonomy>
2263                                               <id provider="uniprot">5482</id>
2264                                               <code>CANTR</code>
2265                                               <scientific_name>Candida tropicalis</scientific_name>
2266                                               <common_name>Yeast</common_name>
2267                                               <rank>species</rank>
2268                                             </taxonomy>
2269                                           </clade>
2270                                         </clade>
2271                                         <clade>
2272                                           <taxonomy>
2273                                             <id provider="uniprot">4959</id>
2274                                             <code>DEBHA</code>
2275                                             <scientific_name>Debaryomyces hansenii</scientific_name>
2276                                             <common_name>Yeast</common_name>
2277                                             <synonym>Torulaspora hansenii</synonym>
2278                                             <rank>species</rank>
2279                                           </taxonomy>
2280                                         </clade>
2281                                       </clade>
2282                                     </clade>
2283                                     <clade>
2284                                       <taxonomy>
2285                                         <id provider="uniprot">4952</id>
2286                                         <code>YARLI</code>
2287                                         <scientific_name>Yarrowia lipolytica</scientific_name>
2288                                         <synonym>Candida lipolytica</synonym>
2289                                         <rank>species</rank>
2290                                       </taxonomy>
2291                                     </clade>
2292                                   </clade>
2293                                 </clade>
2294                                 <clade>
2295                                   <taxonomy>
2296                                     <id provider="uniprot">451866</id>
2297                                     <scientific_name>Taphrinomycotina</scientific_name>
2298                                     <rank>subphylum</rank>
2299                                   </taxonomy>
2300                                   <clade>
2301                                     <name>Pneumocystidomycetes &amp; Schizosaccharomycetes</name>
2302                                     <clade>
2303                                       <taxonomy>
2304                                         <id provider="uniprot">4895</id>
2305                                         <scientific_name>Schizosaccharomyces</scientific_name>
2306                                         <rank>genus</rank>
2307                                       </taxonomy>
2308                                       <clade>
2309                                         <taxonomy>
2310                                           <id provider="uniprot">4897</id>
2311                                           <code>SCHJP</code>
2312                                           <scientific_name>Schizosaccharomyces japonicus</scientific_name>
2313                                           <common_name>Fission yeast</common_name>
2314                                           <rank>species</rank>
2315                                         </taxonomy>
2316                                       </clade>
2317                                       <clade>
2318                                         <taxonomy>
2319                                           <id provider="uniprot">4899</id>
2320                                           <code>SCHOT</code>
2321                                           <scientific_name>Schizosaccharomyces octosporus</scientific_name>
2322                                           <common_name>Fission yeast</common_name>
2323                                           <rank>species</rank>
2324                                           <uri>http://www.dipbot.unict.it/sistematica/Immagini/12002.JPG</uri>
2325                                         </taxonomy>
2326                                       </clade>
2327                                       <clade>
2328                                         <taxonomy>
2329                                           <id provider="uniprot">4896</id>
2330                                           <code>SCHPO</code>
2331                                           <scientific_name>Schizosaccharomyces pombe</scientific_name>
2332                                           <common_name>Fission yeast</common_name>
2333                                           <rank>species</rank>
2334                                         </taxonomy>
2335                                       </clade>
2336                                     </clade>
2337                                     <clade>
2338                                       <taxonomy>
2339                                         <id provider="uniprot">4754</id>
2340                                         <code>PNECA</code>
2341                                         <scientific_name>Pneumocystis carinii</scientific_name>
2342                                         <rank>species</rank>
2343                                       </taxonomy>
2344                                     </clade>
2345                                   </clade>
2346                                   <clade>
2347                                     <name>SAICOM</name>
2348                                     <taxonomy>
2349                                       <id provider="uniprot">5606</id>
2350                                       <scientific_name>Saitoella complicata</scientific_name>
2351                                       <rank>species</rank>
2352                                     </taxonomy>
2353                                   </clade>
2354                                 </clade>
2355                               </clade>
2356                               <clade>
2357                                 <taxonomy>
2358                                   <id provider="uniprot">5204</id>
2359                                   <scientific_name>Basidiomycota</scientific_name>
2360                                   <rank>phylum</rank>
2361                                 </taxonomy>
2362                                 <clade>
2363                                   <name>Agaricomycotina &amp; Ustilaginomycotina &amp; Pucciniomycotina</name>
2364                                   <clade>
2365                                     <name>Agaricomycotina &amp; Ustilaginomycotina</name>
2366                                     <clade>
2367                                       <taxonomy>
2368                                         <id provider="uniprot">5302</id>
2369                                         <scientific_name>Agaricomycotina</scientific_name>
2370                                       </taxonomy>
2371                                       <clade>
2372                                         <taxonomy>
2373                                           <id provider="uniprot">155619</id>
2374                                           <scientific_name>Homobasidiomycetes</scientific_name>
2375                                           <rank>class</rank>
2376                                         </taxonomy>
2377                                         <reference doi="10.1098/rspb.2002.2123">
2378                                           <desc>Evolution of complex fruiting–body morphologies in homobasidiomycetes</desc>
2379                                         </reference>
2380                                         <clade>
2381                                           <name>Agaricomycetidae &amp; Gloeophyllum &amp; Aphyllophorales</name>
2382                                           <clade>
2383                                             <name>Agaricomycetidae &amp; Gloeophyllum</name>
2384                                             <clade>
2385                                               <taxonomy>
2386                                                 <id provider="uniprot">452333</id>
2387                                                 <scientific_name>Agaricomycetidae</scientific_name>
2388                                                 <rank>subclass</rank>
2389                                               </taxonomy>
2390                                               <clade>
2391                                                 <name>Agaricales &amp; Boletales</name>
2392                                                 <clade>
2393                                                   <taxonomy>
2394                                                     <id provider="uniprot">5338</id>
2395                                                     <scientific_name>Agaricales</scientific_name>
2396                                                     <rank>order</rank>
2397                                                   </taxonomy>
2398                                                   <clade>
2399                                                     <name>Agaricus &amp; Coprinopsis &amp; Laccaria &amp; Pleurotus</name>
2400                                                     <clade>
2401                                                       <name>Agaricus &amp; Coprinopsis &amp; Laccaria</name>
2402                                                       <clade>
2403                                                         <name>Agaricus &amp; Coprinopsis</name>
2404                                                         <clade>
2405                                                           <name>AGABB</name>
2406                                                           <taxonomy>
2407                                                             <id provider="uniprot">192524</id>
2408                                                             <scientific_name>Agaricus bisporus var. burnettii</scientific_name>
2409                                                             <uri>http://www.mykoweb.com/CAF/photos/Agaricus_bisporus(fs-03).jpg</uri>
2410                                                           </taxonomy>
2411                                                         </clade>
2412                                                         <clade>
2413                                                           <taxonomy>
2414                                                             <id provider="uniprot">5346</id>
2415                                                             <code>COPCI</code>
2416                                                             <scientific_name>Coprinopsis cinerea</scientific_name>
2417                                                             <common_name>Inky cap fungus</common_name>
2418                                                             <synonym>Hormographiella aspergillata</synonym>
2419                                                             <rank>species</rank>
2420                                                             <uri>http://upload.wikimedia.org/wikipedia/commons/e/e9/Coprinopsis.cinerea.-.lindsey.jpg</uri>
2421                                                           </taxonomy>
2422                                                         </clade>
2423                                                       </clade>
2424                                                       <clade>
2425                                                         <taxonomy>
2426                                                           <id provider="uniprot">29883</id>
2427                                                           <code>LACBI</code>
2428                                                           <scientific_name>Laccaria bicolor</scientific_name>
2429                                                           <common_name>Bicoloured deceiver</common_name>
2430                                                           <synonym>Laccaria laccata var. bicolor</synonym>
2431                                                           <rank>species</rank>
2432                                                           <uri>https://www.llnl.gov/news/newsreleases/2006/images/Laccaria_big.jpg</uri>
2433                                                         </taxonomy>
2434                                                       </clade>
2435                                                     </clade>
2436                                                     <clade>
2437                                                       <name>GYMLUX</name>
2438                                                       <taxonomy>
2439                                                         <id provider="uniprot">206324</id>
2440                                                         <scientific_name>Gymnopus luxurians</scientific_name>
2441                                                         <rank>species</rank>
2442                                                         <uri>http://www.mushroomexpert.com/images/kuo3/gymnopus_luxurians_02.jpg</uri>
2443                                                       </taxonomy>
2444                                                     </clade>
2445                                                   </clade>
2446                                                   <clade>
2447                                                     <taxonomy>
2448                                                       <id provider="uniprot">5322</id>
2449                                                       <code>PLEOS</code>
2450                                                       <scientific_name>Pleurotus ostreatus</scientific_name>
2451                                                       <common_name>Oyster mushroom</common_name>
2452                                                       <synonym>White-rot fungus</synonym>
2453                                                       <rank>species</rank>
2454                                                       <uri>http://botit.botany.wisc.edu/toms_fungi/images/post1.jpg</uri>
2455                                                     </taxonomy>
2456                                                   </clade>
2457                                                 </clade>
2458                                                 <clade>
2459                                                   <taxonomy>
2460                                                     <id provider="uniprot">68889</id>
2461                                                     <scientific_name>Boletales</scientific_name>
2462                                                     <synonym>Melanogastrales</synonym>
2463                                                     <synonym>Sclerodermatales</synonym>
2464                                                     <rank>order</rank>
2465                                                   </taxonomy>
2466                                                   <clade>
2467                                                     <taxonomy>
2468                                                       <id provider="uniprot">227334</id>
2469                                                       <scientific_name>Coniophorineae</scientific_name>
2470                                                       <rank>suborder</rank>
2471                                                     </taxonomy>
2472                                                     <clade>
2473                                                       <name>CONPUT</name>
2474                                                       <taxonomy>
2475                                                         <id provider="uniprot">80637</id>
2476                                                         <scientific_name>Coniophora puteana</scientific_name>
2477                                                         <authority>Schum. ex Fries</authority>
2478                                                         <common_name>cellar fungus</common_name>
2479                                                         <rank>species</rank>
2480                                                         <uri>http://genome.jgi-psf.org/public/Conpu1/P1240066_dp.jpg</uri>
2481                                                       </taxonomy>
2482                                                     </clade>
2483                                                     <clade>
2484                                                       <name>SERLAC</name>
2485                                                       <taxonomy>
2486                                                         <id provider="uniprot">85982</id>
2487                                                         <scientific_name>Serpula lacrymans</scientific_name>
2488                                                         <common_name>dry rot fungus</common_name>
2489                                                         <rank>species</rank>
2490                                                         <uri>http://www.biolib.cz/IMG/GAL/BIG/18135.jpg</uri>
2491                                                       </taxonomy>
2492                                                     </clade>
2493                                                   </clade>
2494                                                   <clade>
2495                                                     <name>HYDPIN</name>
2496                                                     <taxonomy>
2497                                                       <id provider="uniprot">388859</id>
2498                                                       <scientific_name>Hydnomerulius pinastri</scientific_name>
2499                                                       <common_name>Spiny dry rot fungus</common_name>
2500                                                       <rank>species</rank>
2501                                                       <uri>http://mycoweb-stv.narod.ru/fungi/Submitted/STV1/Hydnomerulius_pinastri_1_STV_20100913.jpg</uri>
2502                                                     </taxonomy>
2503                                                   </clade>
2504                                                 </clade>
2505                                               </clade>
2506                                               <clade>
2507                                                 <name>JAAARG</name>
2508                                                 <taxonomy>
2509                                                   <id provider="uniprot">202697</id>
2510                                                   <scientific_name>Jaapia argillacea</scientific_name>
2511                                                   <rank>species</rank>
2512                                                   <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/f/f4/Jaapia-argillacea.jpeg/640px-Jaapia-argillacea.jpeg</uri>
2513                                                 </taxonomy>
2514                                               </clade>
2515                                             </clade>
2516                                             <clade>
2517                                               <taxonomy>
2518                                                 <id provider="uniprot">104355</id>
2519                                                 <code>GLOTR</code>
2520                                                 <scientific_name>Gloeophyllum trabeum</scientific_name>
2521                                                 <common_name>Brown rot fungus</common_name>
2522                                                 <rank>species</rank>
2523                                                 <uri>http://www.cbs.knaw.nl/images/Images_CBSFungi/CD/0001/0008/Gloeophyllum_trabeum.jpg</uri>
2524                                               </taxonomy>
2525                                             </clade>
2526                                           </clade>
2527                                           <clade>
2528                                             <taxonomy>
2529                                               <id provider="uniprot">5303</id>
2530                                               <scientific_name>Aphyllophorales</scientific_name>
2531                                               <authority>Gäum. (1926)</authority>
2532                                               <common_name>Shelf Fungi</common_name>
2533                                               <synonym>Polyporales</synonym>
2534                                               <rank>order</rank>
2535                                             </taxonomy>
2536                                             <clade>
2537                                               <taxonomy>
2538                                                 <id provider="uniprot">83233</id>
2539                                                 <scientific_name>Coriolaceae</scientific_name>
2540                                                 <rank>family</rank>
2541                                               </taxonomy>
2542                                               <reference doi="10.1017/S1477200005001623">
2543                                                 <desc>The phylogenetic distribution of resupinate forms across the major clades of mushroom-forming fungi (Homobasidiomycetes)</desc>
2544                                               </reference>
2545                                               <reference>
2546                                               </reference>
2547                                               <reference>
2548                                               </reference>
2549                                               <clade>
2550                                                 <name>Postia &amp; Fomitopsis &amp; Wolfiporia &amp; Trametes</name>
2551                                                 <clade>
2552                                                   <name>Antrodia clade</name>
2553                                                   <taxonomy>
2554                                                     <common_name>Antrodia clade</common_name>
2555                                                   </taxonomy>
2556                                                   <clade>
2557                                                     <name>FOMPIN</name>
2558                                                     <taxonomy>
2559                                                       <id provider="uniprot">40483</id>
2560                                                       <scientific_name>Fomitopsis pinicola</scientific_name>
2561                                                       <authority>P. Karst. 1881</authority>
2562                                                       <common_name>Red banded polypore</common_name>
2563                                                       <synonym>Fomes pinicola</synonym>
2564                                                       <rank>species</rank>
2565                                                       <uri>http://content6.eol.org/content/2009/06/07/01/48471_large.jpg</uri>
2566                                                     </taxonomy>
2567                                                   </clade>
2568                                                   <clade>
2569                                                     <name>POSPL</name>
2570                                                     <taxonomy>
2571                                                       <id provider="uniprot">104341</id>
2572                                                       <scientific_name>Postia placenta</scientific_name>
2573                                                       <rank>species</rank>
2574                                                       <uri>http://www.commanster.eu/commanster/Mushrooms/Polypore/SuPolypore/Postia.placenta.jpg</uri>
2575                                                     </taxonomy>
2576                                                   </clade>
2577                                                 </clade>
2578                                                 <clade>
2579                                                   <name>core polyporoid clade</name>
2580                                                   <taxonomy>
2581                                                     <common_name>core polyporoid clade</common_name>
2582                                                   </taxonomy>
2583                                                   <clade>
2584                                                     <taxonomy>
2585                                                       <id provider="uniprot">5325</id>
2586                                                       <code>TRAVE</code>
2587                                                       <scientific_name>Trametes versicolor</scientific_name>
2588                                                       <authority>(L.) Lloyd 1921</authority>
2589                                                       <common_name>White-rot fungus</common_name>
2590                                                       <synonym>Coriolus versicolor</synonym>
2591                                                       <synonym>Bjerkandera versicolor</synonym>
2592                                                       <rank>species</rank>
2593                                                       <uri>http://www.mykoweb.com/CAF/photos/Trametes_versicolor(bab-1).jpg</uri>
2594                                                       <uri>http://www.mykoweb.com/CAF/photos/Trametes_versicolor(bab-2).jpg</uri>
2595                                                       <uri>http://www.mykoweb.com/CAF/photos/Trametes_versicolor(mgw-01).jpg</uri>
2596                                                       <uri>http://genome.jgi-psf.org/public/Trave1/Trametes_versicolor.JPG</uri>
2597                                                     </taxonomy>
2598                                                   </clade>
2599                                                   <clade>
2600                                                     <name>WOLCOC</name>
2601                                                     <taxonomy>
2602                                                       <id provider="uniprot">81056</id>
2603                                                       <scientific_name>Wolfiporia cocos</scientific_name>
2604                                                       <rank>species</rank>
2605                                                       <uri>http://toolate.s7.coreserver.jp/kinoko/fungi/wolfiporia_cocos/w_cocos_002.jpg</uri>
2606                                                     </taxonomy>
2607                                                   </clade>
2608                                                 </clade>
2609                                               </clade>
2610                                               <clade>
2611                                                 <taxonomy>
2612                                                   <id provider="uniprot">42742</id>
2613                                                   <code>CERSU</code>
2614                                                   <scientific_name>Ceriporiopsis subvermispora</scientific_name>
2615                                                   <rank>species</rank>
2616                                                 </taxonomy>
2617                                               </clade>
2618                                             </clade>
2619                                             <clade>
2620                                               <name>DICSQU</name>
2621                                               <taxonomy>
2622                                                 <id provider="uniprot">114155</id>
2623                                                 <scientific_name>Dichomitus squalens</scientific_name>
2624                                                 <authority>(P. Karst.) D. A. Reid 1965</authority>
2625                                                 <common_name>Red rot</common_name>
2626                                                 <synonym>Polyporus anceps</synonym>
2627                                                 <rank>species</rank>
2628                                                 <uri>http://www.fs.fed.us/r3/resources/health/field-guide/images/large/sds-f199-large.jpg</uri>
2629                                               </taxonomy>
2630                                             </clade>
2631                                           </clade>
2632                                         </clade>
2633                                         <clade>
2634                                           <taxonomy>
2635                                             <id provider="uniprot">13563</id>
2636                                             <code>HETAN</code>
2637                                             <scientific_name>Heterobasidion annosum</scientific_name>
2638                                             <common_name>Root rot fungus</common_name>
2639                                             <rank>species</rank>
2640                                           </taxonomy>
2641                                         </clade>
2642                                       </clade>
2643                                       <clade>
2644                                         <taxonomy>
2645                                           <id provider="uniprot">5215</id>
2646                                           <scientific_name>Tremellaceae</scientific_name>
2647                                           <rank>family</rank>
2648                                         </taxonomy>
2649                                         <clade>
2650                                           <taxonomy>
2651                                             <id provider="uniprot">5207</id>
2652                                             <code>CRYNE</code>
2653                                             <scientific_name>Cryptococcus neoformans</scientific_name>
2654                                             <synonym>Filobasidiella neoformans</synonym>
2655                                             <rank>species</rank>
2656                                           </taxonomy>
2657                                         </clade>
2658                                         <clade>
2659                                           <taxonomy>
2660                                             <id provider="eol">1029985</id>
2661                                             <code>TREME</code>
2662                                             <scientific_name>Tremella mesenterica</scientific_name>
2663                                             <authority>Pers. 1800</authority>
2664                                             <common_name>Jelly fungus</common_name>
2665                                             <synonym>Yellow Brain</synonym>
2666                                             <synonym>Tremella lutescens</synonym>
2667                                             <rank>species</rank>
2668                                           </taxonomy>
2669                                         </clade>
2670                                       </clade>
2671                                     </clade>
2672                                     <clade>
2673                                       <taxonomy>
2674                                         <id provider="uniprot">452284</id>
2675                                         <scientific_name>Ustilaginomycotina</scientific_name>
2676                                         <rank>subphylum</rank>
2677                                       </taxonomy>
2678                                       <clade>
2679                                         <taxonomy>
2680                                           <id provider="uniprot">425265</id>
2681                                           <code>MALGO</code>
2682                                           <scientific_name>Malassezia globosa (strain ATCC MYA-4612 / CBS 7966)</scientific_name>
2683                                           <common_name>Dandruff-associated fungus</common_name>
2684                                         </taxonomy>
2685                                       </clade>
2686                                       <clade>
2687                                         <taxonomy>
2688                                           <id provider="uniprot">5270</id>
2689                                           <code>USTMA</code>
2690                                           <scientific_name>Ustilago maydis</scientific_name>
2691                                           <common_name>Smut fungus</common_name>
2692                                           <rank>species</rank>
2693                                         </taxonomy>
2694                                       </clade>
2695                                     </clade>
2696                                   </clade>
2697                                   <clade>
2698                                     <taxonomy>
2699                                       <id provider="uniprot">29000</id>
2700                                       <scientific_name>Pucciniomycotina</scientific_name>
2701                                       <rank>subphylum</rank>
2702                                     </taxonomy>
2703                                     <clade>
2704                                       <taxonomy>
2705                                         <id provider="uniprot">5258</id>
2706                                         <scientific_name>Pucciniales</scientific_name>
2707                                         <common_name>rusts</common_name>
2708                                         <rank>order</rank>
2709                                       </taxonomy>
2710                                       <clade>
2711                                         <taxonomy>
2712                                           <id provider="eol">156696</id>
2713                                           <code>MELLP</code>
2714                                           <scientific_name>Melampsora laricis-populina</scientific_name>
2715                                           <authority>Kleb. 1902</authority>
2716                                           <synonym>Melampsora larici-populina</synonym>
2717                                           <synonym>Melampsora laricipopulina</synonym>
2718                                           <rank>species</rank>
2719                                         </taxonomy>
2720                                       </clade>
2721                                       <clade>
2722                                         <taxonomy>
2723                                           <id provider="eol">1029947</id>
2724                                           <code>PUCGR</code>
2725                                           <scientific_name>Puccinia graminis</scientific_name>
2726                                           <authority>Pers. 1794</authority>
2727                                           <common_name>Black stem rust fungus</common_name>
2728                                           <synonym>Wheat rust</synonym>
2729                                           <rank>species</rank>
2730                                         </taxonomy>
2731                                       </clade>
2732                                     </clade>
2733                                     <clade>
2734                                       <taxonomy>
2735                                         <id provider="uniprot">89013</id>
2736                                         <scientific_name>mitosporic Sporidiobolales</scientific_name>
2737                                       </taxonomy>
2738                                       <clade>
2739                                         <taxonomy>
2740                                           <id provider="uniprot">29898</id>
2741                                           <code>RHOGR</code>
2742                                           <scientific_name>Rhodotorula graminis</scientific_name>
2743                                           <common_name>Yeast</common_name>
2744                                           <rank>species</rank>
2745                                         </taxonomy>
2746                                       </clade>
2747                                       <clade>
2748                                         <name>SPORO</name>
2749                                         <taxonomy>
2750                                           <id provider="eol">1013696</id>
2751                                           <scientific_name>Sporobolomyces roseus</scientific_name>
2752                                           <authority>Kluyver &amp; C. B. Niel 1924</authority>
2753                                           <rank>species</rank>
2754                                         </taxonomy>
2755                                       </clade>
2756                                     </clade>
2757                                   </clade>
2758                                 </clade>
2759                                 <clade>
2760                                   <taxonomy>
2761                                     <id provider="uniprot">148960</id>
2762                                     <code>WALSE</code>
2763                                     <scientific_name>Wallemia sebi</scientific_name>
2764                                     <rank>species</rank>
2765                                   </taxonomy>
2766                                 </clade>
2767                               </clade>
2768                             </clade>
2769                             <clade>
2770                               <taxonomy>
2771                                 <id provider="uniprot">451507</id>
2772                                 <scientific_name>Mucoromycotina</scientific_name>
2773                                 <rank>subphylum</rank>
2774                               </taxonomy>
2775                               <clade>
2776                                 <taxonomy>
2777                                   <id provider="uniprot">34489</id>
2778                                   <scientific_name>Mucoraceae</scientific_name>
2779                                   <rank>family</rank>
2780                                 </taxonomy>
2781                                 <clade>
2782                                   <taxonomy>
2783                                     <id provider="uniprot">36080</id>
2784                                     <code>MUCCI</code>
2785                                     <scientific_name>Mucor circinelloides</scientific_name>
2786                                     <synonym>Mucor griseo-roseus</synonym>
2787                                     <rank>species</rank>
2788                                   </taxonomy>
2789                                 </clade>
2790                                 <clade>
2791                                   <taxonomy>
2792                                     <id provider="uniprot">4837</id>
2793                                     <code>PHYBL</code>
2794                                     <scientific_name>Phycomyces blakesleeanus</scientific_name>
2795                                     <rank>species</rank>
2796                                   </taxonomy>
2797                                 </clade>
2798                                 <clade>
2799                                   <taxonomy>
2800                                     <id provider="uniprot">64495</id>
2801                                     <code>RHIOR</code>
2802                                     <scientific_name>Rhizopus oryzae</scientific_name>
2803                                     <synonym>Rhizopus delemar</synonym>
2804                                     <rank>species</rank>
2805                                   </taxonomy>
2806                                 </clade>
2807                               </clade>
2808                               <clade>
2809                                 <name>MORVER</name>
2810                                 <taxonomy>
2811                                   <id provider="uniprot">78898</id>
2812                                   <scientific_name>Mortierella verticillata</scientific_name>
2813                                   <rank>species</rank>
2814                                   <uri>http://www.diark.org/img/species_pict/Mortierella_verticillata</uri>
2815                                 </taxonomy>
2816                               </clade>
2817                             </clade>
2818                           </clade>
2819                           <clade>
2820                             <name>COEREV</name>
2821                             <taxonomy>
2822                               <id provider="uniprot">61392</id>
2823                               <scientific_name>Coemansia reversa</scientific_name>
2824                               <rank>species</rank>
2825                             </taxonomy>
2826                           </clade>
2827                         </clade>
2828                         <clade>
2829                           <taxonomy>
2830                             <id provider="uniprot">28583</id>
2831                             <code>ALLMA</code>
2832                             <scientific_name>Allomyces macrogynus</scientific_name>
2833                             <rank>species</rank>
2834                           </taxonomy>
2835                         </clade>
2836                       </clade>
2837                       <clade>
2838                         <taxonomy>
2839                           <id provider="uniprot">4761</id>
2840                           <scientific_name>Chytridiomycota</scientific_name>
2841                           <common_name>chytrids</common_name>
2842                           <synonym>Mastigomycotina</synonym>
2843                           <rank>phylum</rank>
2844                         </taxonomy>
2845                         <clade>
2846                           <taxonomy>
2847                             <id provider="uniprot">451435</id>
2848                             <scientific_name>Chytridiomycetes</scientific_name>
2849                             <rank>class</rank>
2850                           </taxonomy>
2851                           <clade>
2852                             <taxonomy>
2853                               <id provider="uniprot">109871</id>
2854                               <code>BATDE</code>
2855                               <scientific_name>Batrachochytrium dendrobatidis</scientific_name>
2856                               <common_name>Frog chytrid fungus</common_name>
2857                               <rank>species</rank>
2858                             </taxonomy>
2859                           </clade>
2860                           <clade>
2861                             <taxonomy>
2862                               <id provider="uniprot">109760</id>
2863                               <code>SPIPN</code>
2864                               <scientific_name>Spizellomyces punctatus</scientific_name>
2865                               <rank>species</rank>
2866                             </taxonomy>
2867                           </clade>
2868                         </clade>
2869                         <clade>
2870                           <name>GONPRO</name>
2871                           <taxonomy>
2872                             <id provider="eol">157984</id>
2873                             <scientific_name>Gonapodya prolifera</scientific_name>
2874                             <authority>A. Fisch. 1892</authority>
2875                             <rank>species</rank>
2876                             <uri>http://genome.jgi-psf.org/public/Ganpr1/Picture5.jpg</uri>
2877                           </taxonomy>
2878                         </clade>
2879                       </clade>
2880                     </clade>
2881                     <clade>
2882                       <name>PIRSPE</name>
2883                       <taxonomy>
2884                         <id provider="uniprot">73868</id>
2885                         <scientific_name>Piromyces sp. E2</scientific_name>
2886                         <rank>species</rank>
2887                         <uri>http://www.bsu.edu/classes/ruch/msa/barr/4-17.jpg</uri>
2888                       </taxonomy>
2889                     </clade>
2890                   </clade>
2891                   <clade>
2892                     <taxonomy>
2893                       <id provider="uniprot">6035</id>
2894                       <code>ENCCU</code>
2895                       <scientific_name>Encephalitozoon cuniculi</scientific_name>
2896                       <common_name>Microsporidian parasite</common_name>
2897                       <rank>species</rank>
2898                     </taxonomy>
2899                   </clade>
2900                 </clade>
2901                 <clade>
2902                   <name>Fonticula &amp; Nucleariidae</name>
2903                   <reference doi="10.1093/molbev/msp185">
2904                   </reference>
2905                   <clade>
2906                     <name>FONALB</name>
2907                     <taxonomy>
2908                       <id provider="uniprot">691883</id>
2909                       <scientific_name>Fonticula alba</scientific_name>
2910                       <synonym>Fonticula alba Worley, Raper &amp; Hohl. 1979</synonym>
2911                       <rank>species</rank>
2912                     </taxonomy>
2913                   </clade>
2914                   <clade>
2915                     <name>NUCSIM</name>
2916                     <taxonomy>
2917                       <id provider="uniprot">154970</id>
2918                       <scientific_name>Nuclearia simplex</scientific_name>
2919                       <rank>species</rank>
2920                     </taxonomy>
2921                   </clade>
2922                 </clade>
2923               </clade>
2924             </clade>
2925             <clade>
2926               <name>THETRA</name>
2927               <taxonomy>
2928                 <id provider="uniprot">529818</id>
2929                 <scientific_name>Thecamonas trahens</scientific_name>
2930                 <rank>species</rank>
2931               </taxonomy>
2932             </clade>
2933           </clade>
2934           <clade>
2935             <name>Amoebozoa</name>
2936             <taxonomy>
2937               <id provider="uniprot">554915</id>
2938               <scientific_name>Amoebozoa</scientific_name>
2939             </taxonomy>
2940             <clade>
2941               <name>Dictyostelium</name>
2942               <taxonomy>
2943                 <id provider="uniprot">5782</id>
2944                 <scientific_name>Dictyostelium</scientific_name>
2945                 <rank>genus</rank>
2946               </taxonomy>
2947               <clade>
2948                 <taxonomy>
2949                   <id provider="uniprot">44689</id>
2950                   <code>DICDI</code>
2951                   <scientific_name>Dictyostelium discoideum</scientific_name>
2952                   <common_name>Slime mold</common_name>
2953                   <rank>species</rank>
2954                 </taxonomy>
2955               </clade>
2956               <clade>
2957                 <taxonomy>
2958                   <id provider="uniprot">5786</id>
2959                   <code>DICPU</code>
2960                   <scientific_name>Dictyostelium purpureum</scientific_name>
2961                   <common_name>Slime mold</common_name>
2962                   <rank>species</rank>
2963                 </taxonomy>
2964               </clade>
2965             </clade>
2966             <clade>
2967               <taxonomy>
2968                 <id provider="uniprot">5759</id>
2969                 <code>ENTHI</code>
2970                 <scientific_name>Entamoeba histolytica</scientific_name>
2971                 <rank>species</rank>
2972               </taxonomy>
2973             </clade>
2974           </clade>
2975         </clade>
2976         <clade>
2977           <name>Bikonta</name>
2978           <reference doi="10.1099/ijs.0.63216-0">
2979           </reference>
2980           <clade>
2981             <name>Corticata</name>
2982             <clade>
2983               <name>Archaeplastida</name>
2984               <clade>
2985                 <taxonomy>
2986                   <id provider="uniprot">33090</id>
2987                   <scientific_name>Viridiplantae</scientific_name>
2988                   <common_name>green plants</common_name>
2989                   <rank>kingdom</rank>
2990                 </taxonomy>
2991                 <clade>
2992                   <taxonomy>
2993                     <id provider="uniprot">3193</id>
2994                     <scientific_name>Embryophyta</scientific_name>
2995                   </taxonomy>
2996                   <clade>
2997                     <taxonomy>
2998                       <id provider="uniprot">58023</id>
2999                       <scientific_name>Tracheophyta</scientific_name>
3000                     </taxonomy>
3001                     <clade>
3002                       <taxonomy>
3003                         <id provider="uniprot">3398</id>
3004                         <scientific_name>Magnoliophyta</scientific_name>
3005                         <common_name>flowering plants</common_name>
3006                         <synonym>Angiospermae</synonym>
3007                       </taxonomy>
3008                       <clade>
3009                         <taxonomy>
3010                           <id provider="uniprot">71240</id>
3011                           <scientific_name>eudicotyledons</scientific_name>
3012                         </taxonomy>
3013                         <clade>
3014                           <taxonomy>
3015                             <id provider="uniprot">91827</id>
3016                             <scientific_name>core eudicotyledons</scientific_name>
3017                           </taxonomy>
3018                           <clade>
3019                             <taxonomy>
3020                               <id provider="uniprot">71275</id>
3021                               <scientific_name>rosids</scientific_name>
3022                               <rank>subclass</rank>
3023                             </taxonomy>
3024                             <clade>
3025                               <name>fabids &amp; malvids</name>
3026                               <clade>
3027                                 <taxonomy>
3028                                   <id provider="uniprot">91835</id>
3029                                   <scientific_name>fabids</scientific_name>
3030                                 </taxonomy>
3031                                 <clade>
3032                                   <name>Rosales &amp; Cucurbitales &amp; Fabales</name>
3033                                   <clade>
3034                                     <name>Rosales &amp; Cucurbitales</name>
3035                                     <clade>
3036                                       <taxonomy>
3037                                         <id provider="uniprot">3745</id>
3038                                         <scientific_name>Rosaceae</scientific_name>
3039                                         <rank>family</rank>
3040                                       </taxonomy>
3041                                       <clade>
3042                                         <taxonomy>
3043                                           <id provider="uniprot">57918</id>
3044                                           <code>FRAVE</code>
3045                                           <scientific_name>Fragaria vesca</scientific_name>
3046                                           <common_name>Woodland strawberry</common_name>
3047                                           <synonym>Fragaria vesca L.</synonym>
3048                                           <synonym>European strawberry</synonym>
3049                                           <synonym>alpine strawberry</synonym>
3050                                           <rank>species</rank>
3051                                           <uri>http://www.boga.ruhr-uni-bochum.de/html/Fragaria.vesca.ja6.jpg</uri>
3052                                           <uri>http://caliban.mpiz-koeln.mpg.de/thome/band3/tafel_092_small.jpg</uri>
3053                                         </taxonomy>
3054                                       </clade>
3055                                       <clade>
3056                                         <taxonomy>
3057                                           <id provider="uniprot">3760</id>
3058                                           <code>PRUPE</code>
3059                                           <scientific_name>Prunus persica</scientific_name>
3060                                           <common_name>Peach</common_name>
3061                                           <synonym>Persica vulgaris</synonym>
3062                                           <synonym>Amygdalus persica</synonym>
3063                                           <rank>species</rank>
3064                                           <uri>http://www.mezhenskyjv.narod.ru/foto_sortov/dokaz.jpg</uri>
3065                                         </taxonomy>
3066                                       </clade>
3067                                     </clade>
3068                                     <clade>
3069                                       <taxonomy>
3070                                         <id provider="uniprot">3659</id>
3071                                         <code>CUCSA</code>
3072                                         <scientific_name>Cucumis sativus</scientific_name>
3073                                         <common_name>Cucumber</common_name>
3074                                         <rank>species</rank>
3075                                       </taxonomy>
3076                                     </clade>
3077                                   </clade>
3078                                   <clade>
3079                                     <taxonomy>
3080                                       <id provider="uniprot">3814</id>
3081                                       <scientific_name>Papilionoideae</scientific_name>
3082                                       <rank>subfamily</rank>
3083                                     </taxonomy>
3084                                     <clade>
3085                                       <taxonomy>
3086                                         <id provider="uniprot">3847</id>
3087                                         <code>SOYBN</code>
3088                                         <scientific_name>Glycine max</scientific_name>
3089                                         <authority>cv. Wye</authority>
3090                                         <common_name>Soybean</common_name>
3091                                         <synonym>Glycine hispida</synonym>
3092                                         <rank>species</rank>
3093                                       </taxonomy>
3094                                     </clade>
3095                                     <clade>
3096                                       <taxonomy>
3097                                         <id provider="uniprot">3880</id>
3098                                         <code>MEDTR</code>
3099                                         <scientific_name>Medicago truncatula</scientific_name>
3100                                         <common_name>Barrel medic</common_name>
3101                                         <synonym>Medicago tribuloides</synonym>
3102                                         <rank>species</rank>
3103                                         <uri>http://crdp.ac-besancon.fr/flore/FABACEAE/photos/medicago_truncatula_30.jpg</uri>
3104                                       </taxonomy>
3105                                     </clade>
3106                                   </clade>
3107                                 </clade>
3108                                 <clade>
3109                                   <taxonomy>
3110                                     <id provider="uniprot">3646</id>
3111                                     <scientific_name>Malpighiales</scientific_name>
3112                                     <rank>order</rank>
3113                                   </taxonomy>
3114                                   <clade>
3115                                     <taxonomy>
3116                                       <id provider="uniprot">3977</id>
3117                                       <scientific_name>Euphorbiaceae</scientific_name>
3118                                       <rank>family</rank>
3119                                     </taxonomy>
3120                                     <clade>
3121                                       <taxonomy>
3122                                         <id provider="uniprot">3983</id>
3123                                         <code>MANES</code>
3124                                         <scientific_name>Manihot esculenta</scientific_name>
3125                                         <common_name>Tapioca</common_name>
3126                                         <synonym>Jatropha manihot</synonym>
3127                                         <rank>species</rank>
3128                                         <uri>http://upload.wikimedia.org/wikipedia/commons/9/99/Iwata_kenichi_cassava.jpg</uri>
3129                                       </taxonomy>
3130                                     </clade>
3131                                     <clade>
3132                                       <taxonomy>
3133                                         <id provider="uniprot">3988</id>
3134                                         <code>RICCO</code>
3135                                         <scientific_name>Ricinus communis</scientific_name>
3136                                         <common_name>Castor bean</common_name>
3137                                         <synonym>Ricinus sanguineus</synonym>
3138                                         <rank>species</rank>
3139                                         <uri>http://nmorganics.net/wp-content/uploads/2011/09/castor.jpg</uri>
3140                                       </taxonomy>
3141                                     </clade>
3142                                   </clade>
3143                                   <clade>
3144                                     <taxonomy>
3145                                       <id provider="uniprot">3694</id>
3146                                       <code>POPTR</code>
3147                                       <scientific_name>Populus trichocarpa</scientific_name>
3148                                       <common_name>Western balsam poplar</common_name>
3149                                       <synonym>Populus balsamifera subsp. trichocarpa</synonym>
3150                                       <rank>species</rank>
3151                                     </taxonomy>
3152                                   </clade>
3153                                 </clade>
3154                               </clade>
3155                               <clade>
3156                                 <taxonomy>
3157                                   <id provider="uniprot">91836</id>
3158                                   <scientific_name>malvids</scientific_name>
3159                                 </taxonomy>
3160                                 <clade>
3161                                   <name>Brassicales &amp; Sapindales</name>
3162                                   <clade>
3163                                     <taxonomy>
3164                                       <id provider="uniprot">3699</id>
3165                                       <scientific_name>Brassicales</scientific_name>
3166                                       <rank>order</rank>
3167                                     </taxonomy>
3168                                     <clade>
3169                                       <taxonomy>
3170                                         <id provider="uniprot">3700</id>
3171                                         <scientific_name>Brassicaceae</scientific_name>
3172                                         <rank>family</rank>
3173                                       </taxonomy>
3174                                       <clade>
3175                                         <taxonomy>
3176                                           <id provider="uniprot">3701</id>
3177                                           <scientific_name>Arabidopsis</scientific_name>
3178                                           <rank>genus</rank>
3179                                         </taxonomy>
3180                                         <clade>
3181                                           <taxonomy>
3182                                             <id provider="uniprot">59689</id>
3183                                             <code>ARALY</code>
3184                                             <scientific_name>Arabidopsis lyrata</scientific_name>
3185                                             <common_name>Lyre-leaved rock-cress</common_name>
3186                                             <rank>species</rank>
3187                                           </taxonomy>
3188                                         </clade>
3189                                         <clade>
3190                                           <taxonomy>
3191                                             <id provider="uniprot">3702</id>
3192                                             <code>ARATH</code>
3193                                             <scientific_name>Arabidopsis thaliana</scientific_name>
3194                                             <common_name>Mouse-ear cress</common_name>
3195                                             <rank>species</rank>
3196                                           </taxonomy>
3197                                         </clade>
3198                                       </clade>
3199                                       <clade>
3200                                         <taxonomy>
3201                                           <id provider="uniprot">98038</id>
3202                                           <code>THEHA</code>
3203                                           <scientific_name>Thellungiella halophila</scientific_name>
3204                                           <common_name>Salt cress</common_name>
3205                                           <rank>species</rank>
3206                                           <uri>http://thellungiella.org/images/thellun1.jpg</uri>
3207                                         </taxonomy>
3208                                       </clade>
3209                                     </clade>
3210                                     <clade>
3211                                       <taxonomy>
3212                                         <id provider="uniprot">3649</id>
3213                                         <code>CARPA</code>
3214                                         <scientific_name>Carica papaya</scientific_name>
3215                                         <common_name>Papaya</common_name>
3216                                         <rank>species</rank>
3217                                         <uri>http://www.biopix.com/photos/jko-carica-papaya-00412.jpg</uri>
3218                                         <uri>http://www.texasriviera.com/greenthumbs/papaya10.jpg</uri>
3219                                       </taxonomy>
3220                                     </clade>
3221                                   </clade>
3222                                   <clade>
3223                                     <taxonomy>
3224                                       <id provider="uniprot">2706</id>
3225                                       <scientific_name>Citrus</scientific_name>
3226                                       <rank>genus</rank>
3227                                     </taxonomy>
3228                                     <clade>
3229                                       <name>CITCLE</name>
3230                                       <taxonomy>
3231                                         <id provider="uniprot">85681</id>
3232                                         <scientific_name>Citrus clementina</scientific_name>
3233                                         <synonym>Citrus clementina hort. ex Tanaka</synonym>
3234                                         <rank>species</rank>
3235                                         <uri>http://palmen-bolschetz.de/images/citrus%20clementine.jpg</uri>
3236                                       </taxonomy>
3237                                     </clade>
3238                                     <clade>
3239                                       <taxonomy>
3240                                         <id provider="uniprot">2711</id>
3241                                         <code>CITSI</code>
3242                                         <scientific_name>Citrus sinensis</scientific_name>
3243                                         <common_name>Sweet orange</common_name>
3244                                         <synonym>Citrus x sinensis</synonym>
3245                                         <synonym>Citrus aurantium var. sinensis</synonym>
3246                                         <rank>species</rank>
3247                                         <uri>http://www.west-crete.com/flowers/photos/citrus_sinensis-1.jpg</uri>
3248                                       </taxonomy>
3249                                     </clade>
3250                                   </clade>
3251                                 </clade>
3252                                 <clade>
3253                                   <taxonomy>
3254                                     <id provider="uniprot">71139</id>
3255                                     <code>EUCGR</code>
3256                                     <scientific_name>Eucalyptus grandis</scientific_name>
3257                                     <common_name>Flooded gum</common_name>
3258                                     <rank>species</rank>
3259                                     <uri>http://www.calflora.net/losangelesarboretum/images/eucalyptus_grandis.jpg</uri>
3260                                     <uri>http://www.anbg.gov.au/projects/eucalypts/images/eucalyptus-grandis-bark.jpg</uri>
3261                                   </taxonomy>
3262                                 </clade>
3263                               </clade>
3264                             </clade>
3265                             <clade>
3266                               <taxonomy>
3267                                 <id provider="eol">582304</id>
3268                                 <code>VITVI</code>
3269                                 <scientific_name>Vitis vinifera</scientific_name>
3270                                 <common_name>Grape</common_name>
3271                                 <rank>species</rank>
3272                               </taxonomy>
3273                             </clade>
3274                           </clade>
3275                           <clade>
3276                             <taxonomy>
3277                               <id provider="uniprot">91888</id>
3278                               <scientific_name>lamiids</scientific_name>
3279                             </taxonomy>
3280                             <clade>
3281                               <taxonomy>
3282                                 <id provider="uniprot">4070</id>
3283                                 <scientific_name>Solanaceae</scientific_name>
3284                                 <rank>family</rank>
3285                               </taxonomy>
3286                               <clade>
3287                                 <taxonomy>
3288                                   <id provider="uniprot">4107</id>
3289                                   <scientific_name>Solanum</scientific_name>
3290                                   <rank>genus</rank>
3291                                 </taxonomy>
3292                                 <clade>
3293                                   <taxonomy>
3294                                     <id provider="uniprot">49274</id>
3295                                     <scientific_name>Lycopersicon</scientific_name>
3296                                     <rank>subgenus</rank>
3297                                   </taxonomy>
3298                                   <clade>
3299                                     <taxonomy>
3300                                       <id provider="uniprot">4081</id>
3301                                       <code>SOLLC</code>
3302                                       <scientific_name>Solanum lycopersicum</scientific_name>
3303                                       <common_name>Tomato</common_name>
3304                                       <synonym>Lycopersicon esculentum</synonym>
3305                                       <rank>species</rank>
3306                                       <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0905/1214.jpeg</uri>
3307                                     </taxonomy>
3308                                   </clade>
3309                                   <clade>
3310                                     <taxonomy>
3311                                       <id provider="uniprot">4084</id>
3312                                       <code>SOLPI</code>
3313                                       <scientific_name>Solanum pimpinellifolium</scientific_name>
3314                                       <common_name>Currant tomato</common_name>
3315                                       <synonym>Lycopersicon pimpinellifolium</synonym>
3316                                       <rank>species</rank>
3317                                       <uri>http://botany.csdl.tamu.edu/FLORA/hdwimages2/hdwt4-14.jpg</uri>
3318                                     </taxonomy>
3319                                   </clade>
3320                                 </clade>
3321                                 <clade>
3322                                   <taxonomy>
3323                                     <id provider="4113">uniprot</id>
3324                                     <code>SOLTU</code>
3325                                     <scientific_name>Solanum tuberosum</scientific_name>
3326                                     <common_name>Potato</common_name>
3327                                     <rank>species</rank>
3328                                     <uri>http://www.hear.org/starr/images/images/plants/600/starr-080914-9947.jpg</uri>
3329                                   </taxonomy>
3330                                 </clade>
3331                               </clade>
3332                               <clade>
3333                                 <taxonomy>
3334                                   <id provider="uniprot">4097</id>
3335                                   <code>TOBAC</code>
3336                                   <scientific_name>Nicotiana tabacum</scientific_name>
3337                                   <common_name>Common tobacco</common_name>
3338                                   <rank>species</rank>
3339                                   <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0105/2073.jpeg</uri>
3340                                 </taxonomy>
3341                               </clade>
3342                             </clade>
3343                             <clade>
3344                               <taxonomy>
3345                                 <id provider="uniprot">4155</id>
3346                                 <code>MIMGU</code>
3347                                 <scientific_name>Mimulus guttatus</scientific_name>
3348                                 <common_name>Yellow monkey flower</common_name>
3349                                 <synonym>Yellow monkey flower</synonym>
3350                                 <rank>species</rank>
3351                               </taxonomy>
3352                             </clade>
3353                           </clade>
3354                         </clade>
3355                         <clade>
3356                           <taxonomy>
3357                             <id provider="uniprot">218851</id>
3358                             <code>AQUCA</code>
3359                             <scientific_name>Aquilegia caerulea</scientific_name>
3360                             <authority>E.James</authority>
3361                             <common_name>Rocky mountain columbine</common_name>
3362                             <synonym>Aquilegia coerulea</synonym>
3363                             <rank>species</rank>
3364                             <uri>http://content9.eol.org/content/2010/01/01/03/15137_large.jpg</uri>
3365                           </taxonomy>
3366                         </clade>
3367                       </clade>
3368                       <clade>
3369                         <taxonomy>
3370                           <id provider="uniprot">4479</id>
3371                           <scientific_name>Poaceae</scientific_name>
3372                           <common_name>grass family</common_name>
3373                           <synonym>Gramineae</synonym>
3374                           <rank>family</rank>
3375                         </taxonomy>
3376                         <clade>
3377                           <taxonomy>
3378                             <id provider="uniprot">147369</id>
3379                             <scientific_name>Panicoideae</scientific_name>
3380                             <authority>Link, 1827</authority>
3381                             <synonym>Centothecoideae</synonym>
3382                             <rank>subfamily</rank>
3383                           </taxonomy>
3384                           <clade>
3385                             <taxonomy>
3386                               <id provider="uniprot">147429</id>
3387                               <scientific_name>Andropogoneae</scientific_name>
3388                               <authority>Dumort., 1824</authority>
3389                               <rank>tribe</rank>
3390                             </taxonomy>
3391                             <clade>
3392                               <taxonomy>
3393                                 <id provider="uniprot">4558</id>
3394                                 <code>SORBI</code>
3395                                 <scientific_name>Sorghum bicolor</scientific_name>
3396                                 <common_name>Sorghum</common_name>
3397                                 <synonym>Sorghum vulgare</synonym>
3398                                 <rank>species</rank>
3399                               </taxonomy>
3400                             </clade>
3401                             <clade>
3402                               <taxonomy>
3403                                 <id provider="uniprot">4577</id>
3404                                 <code>MAIZE</code>
3405                                 <scientific_name>Zea mays</scientific_name>
3406                                 <common_name>Maize</common_name>
3407                                 <rank>species</rank>
3408                               </taxonomy>
3409                             </clade>
3410                           </clade>
3411                           <clade>
3412                             <taxonomy>
3413                               <id provider="uniprot">147428</id>
3414                               <scientific_name>Paniceae</scientific_name>
3415                               <rank>tribe</rank>
3416                             </taxonomy>
3417                             <clade>
3418                               <name>PANVIR</name>
3419                               <taxonomy>
3420                                 <id provider="uniprot">38727</id>
3421                                 <scientific_name>Panicum virgatum</scientific_name>
3422                                 <common_name>switchgrass</common_name>
3423                                 <rank>species</rank>
3424                                 <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/2/29/PanicumVirgatum.jpg/220px-PanicumVirgatum.jpg</uri>
3425                               </taxonomy>
3426                             </clade>
3427                             <clade>
3428                               <taxonomy>
3429                                 <id provider="uniprot">4555</id>
3430                                 <code>SETIT</code>
3431                                 <scientific_name>Setaria italica</scientific_name>
3432                                 <common_name>Foxtail millet</common_name>
3433                                 <synonym>Panicum italicum</synonym>
3434                                 <rank>species</rank>
3435                                 <uri>http://en.academic.ru/pictures/enwiki/83/Setaria_italica0.jpg</uri>
3436                               </taxonomy>
3437                             </clade>
3438                           </clade>
3439                         </clade>
3440                         <clade>
3441                           <taxonomy>
3442                             <id provider="uniprot">359160</id>
3443                             <scientific_name>BEP clade</scientific_name>
3444                           </taxonomy>
3445                           <clade>
3446                             <taxonomy>
3447                               <id provider="uniprot">4527</id>
3448                               <scientific_name>Oryza</scientific_name>
3449                               <rank>genus</rank>
3450                             </taxonomy>
3451                             <clade>
3452                               <taxonomy>
3453                                 <id provider="uniprot">4530</id>
3454                                 <code>ORYSA</code>
3455                                 <scientific_name>Oryza sativa</scientific_name>
3456                                 <common_name>Rice</common_name>
3457                                 <rank>species</rank>
3458                               </taxonomy>
3459                             </clade>
3460                             <clade>
3461                               <taxonomy>
3462                                 <id provider="uniprot">39947</id>
3463                                 <code>ORYSJ</code>
3464                                 <scientific_name>Oryza sativa subsp. japonica</scientific_name>
3465                                 <common_name>Rice</common_name>
3466                               </taxonomy>
3467                             </clade>
3468                           </clade>
3469                           <clade>
3470                             <taxonomy>
3471                               <id provider="uniprot">15368</id>
3472                               <code>BRADI</code>
3473                               <scientific_name>Brachypodium distachyon</scientific_name>
3474                               <common_name>Purple false brome</common_name>
3475                               <synonym>Trachynia distachya</synonym>
3476                               <rank>species</rank>
3477                               <uri>http://content5.eol.org/content/2011/01/15/20/16311_large.jpg</uri>
3478                             </taxonomy>
3479                           </clade>
3480                         </clade>
3481                       </clade>
3482                     </clade>
3483                     <clade>
3484                       <taxonomy>
3485                         <id provider="uniprot">34167</id>
3486                         <code>SELMO</code>
3487                         <scientific_name>Selaginella mollis</scientific_name>
3488                         <common_name>Moss</common_name>
3489                         <rank>species</rank>
3490                       </taxonomy>
3491                     </clade>
3492                   </clade>
3493                   <clade>
3494                     <taxonomy>
3495                       <id provider="uniprot">145481</id>
3496                       <code>PHYPA</code>
3497                       <scientific_name>Physcomitrella patens subsp. patens</scientific_name>
3498                       <common_name>Moss</common_name>
3499                       <rank>subspecies</rank>
3500                     </taxonomy>
3501                   </clade>
3502                 </clade>
3503                 <clade>
3504                   <taxonomy>
3505                     <id provider="uniprot">3041</id>
3506                     <scientific_name>Chlorophyta</scientific_name>
3507                     <rank>phylum</rank>
3508                   </taxonomy>
3509                   <clade>
3510                     <taxonomy>
3511                       <id provider="uniprot">13792</id>
3512                       <scientific_name>Mamiellales</scientific_name>
3513                       <rank>order</rank>
3514                     </taxonomy>
3515                     <clade>
3516                       <taxonomy>
3517                         <id provider="uniprot">70447</id>
3518                         <scientific_name>Ostreococcus</scientific_name>
3519                         <rank>genus</rank>
3520                       </taxonomy>
3521                       <clade>
3522                         <taxonomy>
3523                           <id provider="uniprot">436017</id>
3524                           <code>OSTLU</code>
3525                           <scientific_name>Ostreococcus lucimarinus (strain CCE9901)</scientific_name>
3526                         </taxonomy>
3527                       </clade>
3528                       <clade>
3529                         <name>OSTRC</name>
3530                         <taxonomy>
3531                           <id provider="uniprot">385169</id>
3532                           <scientific_name>Ostreococcus sp. RCC809</scientific_name>
3533                           <rank>species</rank>
3534                         </taxonomy>
3535                       </clade>
3536                       <clade>
3537                         <taxonomy>
3538                           <id provider="uniprot">70448</id>
3539                           <code>OSTTA</code>
3540                           <scientific_name>Ostreococcus tauri</scientific_name>
3541                           <rank>species</rank>
3542                         </taxonomy>
3543                       </clade>
3544                     </clade>
3545                     <clade>
3546                       <taxonomy>
3547                         <id provider="uniprot">38832</id>
3548                         <scientific_name>Micromonas</scientific_name>
3549                         <rank>genus</rank>
3550                       </taxonomy>
3551                       <clade>
3552                         <taxonomy>
3553                           <id provider="uniprot">564608</id>
3554                           <code>MICPC</code>
3555                           <scientific_name>Micromonas pusilla (strain CCMP1545)</scientific_name>
3556                           <common_name>Picoplanktonic green alga</common_name>
3557                         </taxonomy>
3558                       </clade>
3559                       <clade>
3560                         <taxonomy>
3561                           <id provider="uniprot">296587</id>
3562                           <code>MICSR</code>
3563                           <scientific_name>Micromonas sp. (strain RCC299 / NOUM17)</scientific_name>
3564                           <common_name>Picoplanktonic green alga</common_name>
3565                           <synonym>Micromonas sp. RCC299</synonym>
3566                           <rank>species</rank>
3567                         </taxonomy>
3568                       </clade>
3569                     </clade>
3570                   </clade>
3571                   <clade>
3572                     <name>Trebouxiophyceae &amp; Chlorophyceae</name>
3573                     <clade>
3574                       <taxonomy>
3575                         <id provider="uniprot">75966</id>
3576                         <scientific_name>Trebouxiophyceae</scientific_name>
3577                         <rank>class</rank>
3578                       </taxonomy>
3579                       <clade>
3580                         <name>ASTSPC</name>
3581                         <taxonomy>
3582                           <id provider="uniprot">763042</id>
3583                           <scientific_name>Asterochloris sp. Cgr/DA1pho</scientific_name>
3584                           <rank>species</rank>
3585                           <uri>http://genome.jgi-psf.org/Astpho1/Figure_3.jpg</uri>
3586                         </taxonomy>
3587                       </clade>
3588                       <clade>
3589                         <name>CHLSP</name>
3590                         <taxonomy>
3591                           <id provider="uniprot">554065</id>
3592                           <scientific_name>Chlorella variabilis</scientific_name>
3593                           <synonym>Chlorella sp. NC64A</synonym>
3594                           <rank>species</rank>
3595                         </taxonomy>
3596                       </clade>
3597                       <clade>
3598                         <name>CHLVUL</name>
3599                         <taxonomy>
3600                           <id provider="uniprot">574566</id>
3601                           <scientific_name>Coccomyxa sp. C-169</scientific_name>
3602                           <synonym>Chlorella vulgaris C-169</synonym>
3603                           <rank>species</rank>
3604                         </taxonomy>
3605                       </clade>
3606                     </clade>
3607                     <clade>
3608                       <taxonomy>
3609                         <id provider="uniprot">3042</id>
3610                         <scientific_name>Chlamydomonadales</scientific_name>
3611                         <rank>order</rank>
3612                       </taxonomy>
3613                       <clade>
3614                         <taxonomy>
3615                           <id provider="uniprot">3055</id>
3616                           <code>CHLRE</code>
3617                           <scientific_name>Chlamydomonas reinhardtii</scientific_name>
3618                           <synonym>Chlamydomonas smithii</synonym>
3619                           <rank>species</rank>
3620                         </taxonomy>
3621                       </clade>
3622                       <clade>
3623                         <taxonomy>
3624                           <id provider="uniprot">3067</id>
3625                           <code>VOLCA</code>
3626                           <scientific_name>Volvox carteri</scientific_name>
3627                           <common_name>Green alga</common_name>
3628                           <rank>species</rank>
3629                         </taxonomy>
3630                       </clade>
3631                     </clade>
3632                   </clade>
3633                 </clade>
3634               </clade>
3635               <clade>
3636                 <taxonomy>
3637                   <id provider="uniprot">45157</id>
3638                   <code>CYAME</code>
3639                   <scientific_name>Cyanidioschyzon merolae</scientific_name>
3640                   <common_name>Red alga</common_name>
3641                   <rank>species</rank>
3642                   <uri>http://merolae.biol.s.u-tokyo.ac.jp/</uri>
3643                 </taxonomy>
3644               </clade>
3645             </clade>
3646             <clade>
3647               <name>Chromalveolate</name>
3648               <reference doi="10.1073/pnas.0712248105">
3649               </reference>
3650               <clade>
3651                 <name>Heterokonta_Alveolata</name>
3652                 <clade>
3653                   <name>Alveolata</name>
3654                   <taxonomy>
3655                     <id provider="uniprot">33630</id>
3656                     <scientific_name>Alveolata</scientific_name>
3657                   </taxonomy>
3658                   <clade>
3659                     <taxonomy>
3660                       <id provider="uniprot">5794</id>
3661                       <scientific_name>Apicomplexa</scientific_name>
3662                       <rank>phylum</rank>
3663                     </taxonomy>
3664                     <clade>
3665                       <taxonomy>
3666                         <id provider="uniprot">422676</id>
3667                         <scientific_name>Aconoidasida</scientific_name>
3668                         <rank>class</rank>
3669                       </taxonomy>
3670                       <clade>
3671                         <taxonomy>
3672                           <id provider="uniprot">5820</id>
3673                           <scientific_name>Plasmodium</scientific_name>
3674                           <rank>genus</rank>
3675                         </taxonomy>
3676                         <clade>
3677                           <taxonomy>
3678                             <id provider="uniprot">5825</id>
3679                             <code>PLACH</code>
3680                             <scientific_name>Plasmodium chabaudi</scientific_name>
3681                             <rank>species</rank>
3682                           </taxonomy>
3683                         </clade>
3684                         <clade>
3685                           <taxonomy>
3686                             <id provider="uniprot">5833</id>
3687                             <code>PLAFA</code>
3688                             <scientific_name>Plasmodium falciparum</scientific_name>
3689                             <rank>species</rank>
3690                           </taxonomy>
3691                         </clade>
3692                         <clade>
3693                           <taxonomy>
3694                             <id provider="uniprot">73239</id>
3695                             <code>PLAYO</code>
3696                             <scientific_name>Plasmodium yoelii yoelii</scientific_name>
3697                             <rank>subspecies</rank>
3698                           </taxonomy>
3699                         </clade>
3700                       </clade>
3701                       <clade>
3702                         <name>Theileria</name>
3703                         <taxonomy>
3704                           <id provider="uniprot">5873</id>
3705                           <scientific_name>Theileria</scientific_name>
3706                           <rank>genus</rank>
3707                         </taxonomy>
3708                         <clade>
3709                           <taxonomy>
3710                             <id provider="uniprot">5874</id>
3711                             <code>THEAN</code>
3712                             <scientific_name>Theileria annulata</scientific_name>
3713                             <rank>species</rank>
3714                           </taxonomy>
3715                         </clade>
3716                         <clade>
3717                           <taxonomy>
3718                             <id provider="uniprot">5875</id>
3719                             <code>THEPA</code>
3720                             <scientific_name>Theileria parva</scientific_name>
3721                             <rank>species</rank>
3722                           </taxonomy>
3723                         </clade>
3724                       </clade>
3725                     </clade>
3726                     <clade>
3727                       <taxonomy>
3728                         <id provider="uniprot">423054</id>
3729                         <scientific_name>Eimeriorina</scientific_name>
3730                         <rank>suborder</rank>
3731                       </taxonomy>
3732                       <clade>
3733                         <taxonomy>
3734                           <id provider="uniprot">5806</id>
3735                           <scientific_name>Cryptosporidium</scientific_name>
3736                           <rank>genus</rank>
3737                         </taxonomy>
3738                         <clade>
3739                           <taxonomy>
3740                             <id provider="uniprot">237895</id>
3741                             <code>CRYHO</code>
3742                             <scientific_name>Cryptosporidium hominis</scientific_name>
3743                             <rank>species</rank>
3744                           </taxonomy>
3745                         </clade>
3746                         <clade>
3747                           <taxonomy>
3748                             <id provider="uniprot">5807</id>
3749                             <code>CRYPV</code>
3750                             <scientific_name>Cryptosporidium parvum</scientific_name>
3751                             <rank>species</rank>
3752                           </taxonomy>
3753                         </clade>
3754                       </clade>
3755                       <clade>
3756                         <name>Eimeria &amp; Toxoplasma</name>
3757                         <distribution>
3758                           <point geodetic_datum="?" alt_unit="?">
3759                             <lat>0</lat>
3760                             <long>0</long>
3761                             <alt>0</alt>
3762                           </point>
3763                         </distribution>
3764                         <reference doi="10.1093/molbev/msn213">
3765                           <desc>The Apicomplexan Whole-Genome Phylogeny: An Analysis of Incongruence among Gene Trees</desc>
3766                         </reference>
3767                         <reference>
3768                         </reference>
3769                         <clade>
3770                           <taxonomy>
3771                             <id provider="uniprot">5802</id>
3772                             <code>EIMTE</code>
3773                             <scientific_name>Eimeria tenella</scientific_name>
3774                             <common_name>Coccidian parasite</common_name>
3775                             <rank>species</rank>
3776                             <uri>http://www.k-state.edu/parasitology/625tutorials/FIGtenella.jpg</uri>
3777                           </taxonomy>
3778                         </clade>
3779                         <clade>
3780                           <taxonomy>
3781                             <id provider="uniprot">5811</id>
3782                             <code>TOXGO</code>
3783                             <scientific_name>Toxoplasma gondii</scientific_name>
3784                             <rank>species</rank>
3785                           </taxonomy>
3786                         </clade>
3787                       </clade>
3788                     </clade>
3789                   </clade>
3790                   <clade>
3791                     <taxonomy>
3792                       <id provider="uniprot">6020</id>
3793                       <scientific_name>Oligohymenophorea</scientific_name>
3794                       <rank>class</rank>
3795                     </taxonomy>
3796                     <clade>
3797                       <taxonomy>
3798                         <id provider="uniprot">5888</id>
3799                         <code>PARTE</code>
3800                         <scientific_name>Paramecium tetraurelia</scientific_name>
3801                         <rank>species</rank>
3802                       </taxonomy>
3803                     </clade>
3804                     <clade>
3805                       <taxonomy>
3806                         <id provider="uniprot">5911</id>
3807                         <code>TETTH</code>
3808                         <scientific_name>Tetrahymena thermophila</scientific_name>
3809                         <rank>species</rank>
3810                       </taxonomy>
3811                     </clade>
3812                   </clade>
3813                 </clade>
3814                 <clade>
3815                   <name>Heterokonta</name>
3816                   <taxonomy>
3817                     <id provider="uniprot">33634</id>
3818                     <scientific_name>stramenopiles</scientific_name>
3819                     <synonym>Chromophyta</synonym>
3820                   </taxonomy>
3821                   <clade>
3822                     <name>Pelagophyceae_Bacillariophyta</name>
3823                     <clade>
3824                       <taxonomy>
3825                         <id provider="uniprot">2836</id>
3826                         <scientific_name>Bacillariophyta</scientific_name>
3827                         <common_name>diatoms</common_name>
3828                         <rank>phylum</rank>
3829                       </taxonomy>
3830                       <clade>
3831                         <taxonomy>
3832                           <id provider="uniprot">33850</id>
3833                           <scientific_name>Bacillariophycidae</scientific_name>
3834                         </taxonomy>
3835                         <clade>
3836                           <taxonomy>
3837                             <id provider="eol">911694</id>
3838                             <code>FRACY</code>
3839                             <scientific_name>Fragilariopsis cylindrus</scientific_name>
3840                             <authority>Krieger</authority>
3841                             <synonym>Nitzschia cylindrus</synonym>
3842                             <rank>species</rank>
3843                           </taxonomy>
3844                         </clade>
3845                         <clade>
3846                           <taxonomy>
3847                             <id provider="eol">912693</id>
3848                             <code>PHATR</code>
3849                             <scientific_name>Phaeodactylum tricornutum</scientific_name>
3850                             <authority>Bohlin</authority>
3851                             <rank>species</rank>
3852                           </taxonomy>
3853                         </clade>
3854                       </clade>
3855                       <clade>
3856                         <taxonomy>
3857                           <id provider="eol">916868</id>
3858                           <code>THAPS</code>
3859                           <scientific_name>Thalassiosira pseudonana</scientific_name>
3860                           <authority>Hasle &amp; Heimdal</authority>
3861                           <common_name>Marine diatom</common_name>
3862                           <synonym>Cyclotella nana</synonym>
3863                           <rank>species</rank>
3864                         </taxonomy>
3865                       </clade>
3866                     </clade>
3867                     <clade>
3868                       <taxonomy>
3869                         <id provider="eol">912461</id>
3870                         <code>AURAN</code>
3871                         <scientific_name>Aureococcus anophagefferens</scientific_name>
3872                         <authority>Hargraves &amp; Sieburth</authority>
3873                         <rank>species</rank>
3874                       </taxonomy>
3875                     </clade>
3876                   </clade>
3877                   <clade>
3878                     <taxonomy>
3879                       <id provider="uniprot">4783</id>
3880                       <scientific_name>Phytophthora</scientific_name>
3881                       <rank>genus</rank>
3882                     </taxonomy>
3883                     <clade>
3884                       <taxonomy>
3885                         <id provider="uniprot">4787</id>
3886                         <code>PHYIN</code>
3887                         <scientific_name>Phytophthora infestans</scientific_name>
3888                         <common_name>Potato late blight fungus</common_name>
3889                         <rank>species</rank>
3890                       </taxonomy>
3891                     </clade>
3892                     <clade>
3893                       <taxonomy>
3894                         <id provider="uniprot">164328</id>
3895                         <code>PHYRM</code>
3896                         <scientific_name>Phytophthora ramorum</scientific_name>
3897                         <common_name>Sudden oak death agent</common_name>
3898                         <rank>species</rank>
3899                       </taxonomy>
3900                     </clade>
3901                     <clade>
3902                       <name>PHYSO</name>
3903                       <taxonomy>
3904                         <id provider="uniprot">67593</id>
3905                         <scientific_name>Phytophthora sojae</scientific_name>
3906                         <rank>species</rank>
3907                       </taxonomy>
3908                     </clade>
3909                   </clade>
3910                 </clade>
3911               </clade>
3912               <clade>
3913                 <taxonomy>
3914                   <id provider="uniprot">2903</id>
3915                   <code>EMIHU</code>
3916                   <scientific_name>Emiliania huxleyi</scientific_name>
3917                   <rank>species</rank>
3918                 </taxonomy>
3919               </clade>
3920             </clade>
3921           </clade>
3922           <clade>
3923             <name>Excavata</name>
3924             <reference doi="10.1038/nature04546">
3925             </reference>
3926             <clade>
3927               <name>Kinetoplastida_Heterolobosea</name>
3928               <clade>
3929                 <taxonomy>
3930                   <id provider="uniprot">5654</id>
3931                   <scientific_name>Trypanosomatidae</scientific_name>
3932                   <rank>family</rank>
3933                 </taxonomy>
3934                 <clade>
3935                   <taxonomy>
3936                     <id provider="uniprot">5664</id>
3937                     <code>LEIMA</code>
3938                     <scientific_name>Leishmania major</scientific_name>
3939                     <rank>species</rank>
3940                   </taxonomy>
3941                 </clade>
3942                 <clade>
3943                   <taxonomy>
3944                     <id provider="uniprot">5702</id>
3945                     <code>TRYBB</code>
3946                     <scientific_name>Trypanosoma brucei brucei</scientific_name>
3947                     <rank>subspecies</rank>
3948                   </taxonomy>
3949                 </clade>
3950               </clade>
3951               <clade>
3952                 <taxonomy>
3953                   <id provider="uniprot">5762</id>
3954                   <code>NAEGR</code>
3955                   <scientific_name>Naegleria gruberi</scientific_name>
3956                   <common_name>Amoeba</common_name>
3957                   <rank>species</rank>
3958                 </taxonomy>
3959               </clade>
3960             </clade>
3961             <clade>
3962               <name>Metamonada</name>
3963               <clade>
3964                 <taxonomy>
3965                   <id provider="uniprot">5741</id>
3966                   <code>GIALA</code>
3967                   <scientific_name>Giardia lamblia</scientific_name>
3968                   <synonym>Giardia intestinalis</synonym>
3969                   <synonym>Giardia lamblia</synonym>
3970                   <rank>species</rank>
3971                 </taxonomy>
3972               </clade>
3973               <clade>
3974                 <taxonomy>
3975                   <id provider="uniprot">5722</id>
3976                   <code>TRIVA</code>
3977                   <scientific_name>Trichomonas vaginalis</scientific_name>
3978                   <rank>species</rank>
3979                 </taxonomy>
3980               </clade>
3981             </clade>
3982           </clade>
3983         </clade>
3984       </clade>
3985       <clade>
3986         <name>Archaea</name>
3987         <taxonomy>
3988           <id provider="uniprot">2157</id>
3989           <scientific_name>Archaea</scientific_name>
3990           <rank>superkingdom</rank>
3991         </taxonomy>
3992         <clade>
3993           <name>a_62</name>
3994           <clade>
3995             <name>a_56</name>
3996             <clade>
3997               <taxonomy>
3998                 <id provider="uniprot">28890</id>
3999                 <scientific_name>Euryarchaeota</scientific_name>
4000                 <rank>phylum</rank>
4001               </taxonomy>
4002               <clade>
4003                 <name>a_44</name>
4004                 <clade>
4005                   <name>a_28</name>
4006                   <clade>
4007                     <name>a_26</name>
4008                     <clade>
4009                       <taxonomy>
4010                         <id provider="uniprot">224756</id>
4011                         <scientific_name>Methanomicrobia</scientific_name>
4012                         <rank>class</rank>
4013                       </taxonomy>
4014                       <clade>
4015                         <name>a_14</name>
4016                         <clade>
4017                           <name>a_12</name>
4018                           <clade>
4019                             <taxonomy>
4020                               <id provider="uniprot">2206</id>
4021                               <scientific_name>Methanosarcinaceae</scientific_name>
4022                               <rank>family</rank>
4023                             </taxonomy>
4024                             <clade>
4025                               <taxonomy>
4026                                 <id provider="uniprot">2207</id>
4027                                 <scientific_name>Methanosarcina</scientific_name>
4028                                 <rank>genus</rank>
4029                               </taxonomy>
4030                               <clade>
4031                                 <name>a_2</name>
4032                                 <clade>
4033                                   <taxonomy>
4034                                     <id provider="uniprot">2214</id>
4035                                     <code>METAC</code>
4036                                     <scientific_name>Methanosarcina acetivorans</scientific_name>
4037                                     <rank>species</rank>
4038                                   </taxonomy>
4039                                 </clade>
4040                                 <clade>
4041                                   <taxonomy>
4042                                     <id provider="uniprot">269797</id>
4043                                     <code>METBF</code>
4044                                     <scientific_name>Methanosarcina barkeri (strain Fusaro / DSM 804)</scientific_name>
4045                                   </taxonomy>
4046                                 </clade>
4047                               </clade>
4048                               <clade>
4049                                 <taxonomy>
4050                                   <id provider="uniprot">2209</id>
4051                                   <code>METMA</code>
4052                                   <scientific_name>Methanosarcina mazei</scientific_name>
4053                                   <synonym>Methanosarcina frisia</synonym>
4054                                   <rank>species</rank>
4055                                 </taxonomy>
4056                               </clade>
4057                             </clade>
4058                             <clade>
4059                               <taxonomy>
4060                                 <id provider="uniprot">259564</id>
4061                                 <code>METBU</code>
4062                                 <scientific_name>Methanococcoides burtonii (strain DSM 6242)</scientific_name>
4063                               </taxonomy>
4064                             </clade>
4065                           </clade>
4066                           <clade>
4067                             <name>a_11</name>
4068                             <taxonomy>
4069                               <id provider="uniprot">2191</id>
4070                               <scientific_name>Methanomicrobiales</scientific_name>
4071                               <rank>order</rank>
4072                             </taxonomy>
4073                             <clade>
4074                               <name>a_9</name>
4075                               <clade>
4076                                 <taxonomy>
4077                                   <id provider="uniprot">456442</id>
4078                                   <code>METB6</code>
4079                                   <scientific_name>Methanoregula boonei (strain 6A8)</scientific_name>
4080                                 </taxonomy>
4081                               </clade>
4082                               <clade>
4083                                 <taxonomy>
4084                                   <id provider="uniprot">2203</id>
4085                                   <code>METHU</code>
4086                                   <scientific_name>Methanospirillum hungatei</scientific_name>
4087                                   <rank>species</rank>
4088                                 </taxonomy>
4089                               </clade>
4090                             </clade>
4091                             <clade>
4092                               <taxonomy>
4093                                 <id provider="uniprot">368407</id>
4094                                 <code>METMJ</code>
4095                                 <scientific_name>Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1)</scientific_name>
4096                               </taxonomy>
4097                             </clade>
4098                           </clade>
4099                         </clade>
4100                         <clade>
4101                           <taxonomy>
4102                             <id provider="uniprot">410358</id>
4103                             <code>METLZ</code>
4104                             <scientific_name>Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z)</scientific_name>
4105                           </taxonomy>
4106                         </clade>
4107                       </clade>
4108                       <clade>
4109                         <taxonomy>
4110                           <id provider="uniprot">349307</id>
4111                           <code>METTP</code>
4112                           <scientific_name>Methanosaeta thermophila (strain DSM 6194 / PT)</scientific_name>
4113                           <synonym>Methanothrix thermophila (strain DSM 6194 / PT)</synonym>
4114                         </taxonomy>
4115                       </clade>
4116                     </clade>
4117                     <clade>
4118                       <name>a_25</name>
4119                       <taxonomy>
4120                         <id provider="uniprot">2236</id>
4121                         <scientific_name>Halobacteriaceae</scientific_name>
4122                         <rank>family</rank>
4123                       </taxonomy>
4124                       <clade>
4125                         <name>a_23</name>
4126                         <clade>
4127                           <name>a_19</name>
4128                           <clade>
4129                             <taxonomy>
4130                               <id provider="uniprot">2238</id>
4131                               <code>HALMA</code>
4132                               <scientific_name>Haloarcula marismortui</scientific_name>
4133                               <synonym>Halobacterium marismortui</synonym>
4134                               <rank>species</rank>
4135                             </taxonomy>
4136                           </clade>
4137                           <clade>
4138                             <taxonomy>
4139                               <id provider="uniprot">2257</id>
4140                               <code>NATPH</code>
4141                               <scientific_name>Natronomonas pharaonis</scientific_name>
4142                               <common_name>Natronobacterium pharaonis</common_name>
4143                               <rank>species</rank>
4144                             </taxonomy>
4145                           </clade>
4146                         </clade>
4147                         <clade>
4148                           <name>a_22</name>
4149                           <taxonomy>
4150                             <id provider="uniprot">2239</id>
4151                             <scientific_name>Halobacterium</scientific_name>
4152                             <rank>genus</rank>
4153                           </taxonomy>
4154                           <clade>
4155                             <taxonomy>
4156                               <id provider="uniprot">478009</id>
4157                               <code>HALS3</code>
4158                               <scientific_name>Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1)</scientific_name>
4159                             </taxonomy>
4160                           </clade>
4161                           <clade>
4162                             <taxonomy>
4163                               <id provider="uniprot">2243</id>
4164                               <code>HALSP</code>
4165                               <scientific_name>Halobacterium sp.</scientific_name>
4166                               <rank>species</rank>
4167                             </taxonomy>
4168                           </clade>
4169                         </clade>
4170                       </clade>
4171                       <clade>
4172                         <taxonomy>
4173                           <id provider="uniprot">362976</id>
4174                           <code>HALWD</code>
4175                           <scientific_name>Haloquadratum walsbyi (strain DSM 16790)</scientific_name>
4176                         </taxonomy>
4177                       </clade>
4178                     </clade>
4179                   </clade>
4180                   <clade>
4181                     <taxonomy>
4182                       <id provider="uniprot">2234</id>
4183                       <code>ARCFU</code>
4184                       <scientific_name>Archaeoglobus fulgidus</scientific_name>
4185                       <rank>species</rank>
4186                     </taxonomy>
4187                   </clade>
4188                 </clade>
4189                 <clade>
4190                   <name>a_43</name>
4191                   <clade>
4192                     <name>a_41</name>
4193                     <clade>
4194                       <name>a_35</name>
4195                       <taxonomy>
4196                         <id provider="uniprot">2182</id>
4197                         <scientific_name>Methanococcales</scientific_name>
4198                         <rank>order</rank>
4199                       </taxonomy>
4200                       <clade>
4201                         <name>a_31</name>
4202                         <clade>
4203                           <taxonomy>
4204                             <id provider="uniprot">2190</id>
4205                             <code>METJA</code>
4206                             <scientific_name>Methanocaldococcus jannaschii</scientific_name>
4207                             <synonym>Methanococcus jannaschii</synonym>
4208                             <rank>species</rank>
4209                           </taxonomy>
4210                         </clade>
4211                         <clade>
4212                           <taxonomy>
4213                             <id provider="uniprot">419665</id>
4214                             <code>META3</code>
4215                             <scientific_name>Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280)</scientific_name>
4216                           </taxonomy>
4217                         </clade>
4218                       </clade>
4219                       <clade>
4220                         <name>a_34</name>
4221                         <taxonomy>
4222                           <id provider="uniprot">2184</id>
4223                           <scientific_name>Methanococcus</scientific_name>
4224                           <rank>genus</rank>
4225                         </taxonomy>
4226                         <clade>
4227                           <taxonomy>
4228                             <id provider="uniprot">39152</id>
4229                             <code>METMP</code>
4230                             <scientific_name>Methanococcus maripaludis</scientific_name>
4231                             <synonym>Methanococcus deltae</synonym>
4232                             <rank>species</rank>
4233                           </taxonomy>
4234                         </clade>
4235                         <clade>
4236                           <taxonomy>
4237                             <id provider="uniprot">406327</id>
4238                             <code>METVS</code>
4239                             <scientific_name>Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224)</scientific_name>
4240                           </taxonomy>
4241                         </clade>
4242                       </clade>
4243                     </clade>
4244                     <clade>
4245                       <name>a_40</name>
4246                       <taxonomy>
4247                         <id provider="uniprot">2159</id>
4248                         <scientific_name>Methanobacteriaceae</scientific_name>
4249                         <rank>family</rank>
4250                       </taxonomy>
4251                       <clade>
4252                         <name>a_38</name>
4253                         <clade>
4254                           <taxonomy>
4255                             <id provider="uniprot">420247</id>
4256                             <code>METS3</code>
4257                             <scientific_name>Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861)</scientific_name>
4258                           </taxonomy>
4259                         </clade>
4260                         <clade>
4261                           <taxonomy>
4262                             <id provider="uniprot">339860</id>
4263                             <code>METST</code>
4264                             <scientific_name>Methanosphaera stadtmanae (strain DSM 3091)</scientific_name>
4265                           </taxonomy>
4266                         </clade>
4267                       </clade>
4268                       <clade>
4269                         <taxonomy>
4270                           <id provider="uniprot">187420</id>
4271                           <code>METTH</code>
4272                           <scientific_name>Methanobacterium thermoautotrophicum</scientific_name>
4273                         </taxonomy>
4274                       </clade>
4275                     </clade>
4276                   </clade>
4277                   <clade>
4278                     <taxonomy>
4279                       <id provider="uniprot">2320</id>
4280                       <code>METKA</code>
4281                       <scientific_name>Methanopyrus kandleri</scientific_name>
4282                       <rank>species</rank>
4283                     </taxonomy>
4284                   </clade>
4285                 </clade>
4286               </clade>
4287               <clade>
4288                 <name>a_51</name>
4289                 <taxonomy>
4290                   <id provider="uniprot">2259</id>
4291                   <scientific_name>Thermococcaceae</scientific_name>
4292                   <rank>family</rank>
4293                 </taxonomy>
4294                 <clade>
4295                   <name>a_47</name>
4296                   <clade>
4297                     <taxonomy>
4298                       <id provider="uniprot">2261</id>
4299                       <code>PYRFU</code>
4300                       <scientific_name>Pyrococcus furiosus</scientific_name>
4301                       <rank>species</rank>
4302                     </taxonomy>
4303                   </clade>
4304                   <clade>
4305                     <taxonomy>
4306                       <id provider="uniprot">69014</id>
4307                       <code>PYRKO</code>
4308                       <scientific_name>Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1)</scientific_name>
4309                       <synonym>Thermococcus kodakaraensis (strain KOD1)</synonym>
4310                     </taxonomy>
4311                   </clade>
4312                 </clade>
4313                 <clade>
4314                   <name>a_50</name>
4315                   <taxonomy>
4316                     <id provider="uniprot">2260</id>
4317                     <scientific_name>Pyrococcus</scientific_name>
4318                     <rank>genus</rank>
4319                   </taxonomy>
4320                   <clade>
4321                     <taxonomy>
4322                       <id provider="uniprot">29292</id>
4323                       <code>PYRAB</code>
4324                       <scientific_name>Pyrococcus abyssi</scientific_name>
4325                       <rank>species</rank>
4326                     </taxonomy>
4327                   </clade>
4328                   <clade>
4329                     <taxonomy>
4330                       <id provider="uniprot">53953</id>
4331                       <code>PYRHO</code>
4332                       <scientific_name>Pyrococcus horikoshii</scientific_name>
4333                       <rank>species</rank>
4334                     </taxonomy>
4335                   </clade>
4336                 </clade>
4337               </clade>
4338             </clade>
4339             <clade>
4340               <name>a_55</name>
4341               <clade>
4342                 <taxonomy>
4343                   <id provider="uniprot">228908</id>
4344                   <code>NANEQ</code>
4345                   <scientific_name>Nanoarchaeum equitans (strain Kin4-M)</scientific_name>
4346                 </taxonomy>
4347               </clade>
4348               <clade>
4349                 <taxonomy>
4350                   <id provider="uniprot">436308</id>
4351                   <code>NITMS</code>
4352                   <scientific_name>Nitrosopumilus maritimus (strain SCM1)</scientific_name>
4353                 </taxonomy>
4354               </clade>
4355             </clade>
4356           </clade>
4357           <clade>
4358             <taxonomy>
4359               <id provider="uniprot">2301</id>
4360               <scientific_name>Thermoplasmatales</scientific_name>
4361               <rank>order</rank>
4362             </taxonomy>
4363             <clade>
4364               <name>a_59</name>
4365               <taxonomy>
4366                 <id provider="uniprot">2302</id>
4367                 <scientific_name>Thermoplasma</scientific_name>
4368                 <rank>genus</rank>
4369               </taxonomy>
4370               <clade>
4371                 <taxonomy>
4372                   <id provider="uniprot">273075</id>
4373                   <code>THEAC</code>
4374                   <scientific_name>Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)</scientific_name>
4375                 </taxonomy>
4376               </clade>
4377               <clade>
4378                 <taxonomy>
4379                   <id provider="uniprot">273116</id>
4380                   <code>THEVO</code>
4381                   <scientific_name>Thermoplasma volcanium (strain ATCC 51530 / DSM 4299 / IFO 15438 / JCM 9571 / GSS1)</scientific_name>
4382                 </taxonomy>
4383               </clade>
4384             </clade>
4385             <clade>
4386               <taxonomy>
4387                 <id provider="uniprot">263820</id>
4388                 <code>PICTO</code>
4389                 <scientific_name>Picrophilus torridus (strain ATCC 700027 / DSM 9790 / JCM 10055 / NBRC 100828)</scientific_name>
4390               </taxonomy>
4391             </clade>
4392           </clade>
4393         </clade>
4394         <clade>
4395           <name>a_93</name>
4396           <clade>
4397             <taxonomy>
4398               <id provider="uniprot">183924</id>
4399               <scientific_name>Thermoprotei</scientific_name>
4400               <rank>class</rank>
4401             </taxonomy>
4402             <clade>
4403               <name>a_83</name>
4404               <clade>
4405                 <name>a_81</name>
4406                 <clade>
4407                   <name>a_73</name>
4408                   <taxonomy>
4409                     <id provider="uniprot">2267</id>
4410                     <scientific_name>Thermoproteaceae</scientific_name>
4411                     <rank>family</rank>
4412                   </taxonomy>
4413                   <clade>
4414                     <name>a_71</name>
4415                     <clade>
4416                       <name>a_67</name>
4417                       <taxonomy>
4418                         <id provider="uniprot">2276</id>
4419                         <scientific_name>Pyrobaculum</scientific_name>
4420                         <rank>genus</rank>
4421                       </taxonomy>
4422                       <clade>
4423                         <name>a_65</name>
4424                         <clade>
4425                           <taxonomy>
4426                             <id provider="uniprot">340102</id>
4427                             <code>PYRAR</code>
4428                             <scientific_name>Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321)</scientific_name>
4429                           </taxonomy>
4430                         </clade>
4431                         <clade>
4432                           <taxonomy>
4433                             <id provider="uniprot">410359</id>
4434                             <code>PYRCJ</code>
4435                             <scientific_name>Pyrobaculum calidifontis (strain JCM 11548 / VA1)</scientific_name>
4436                           </taxonomy>
4437                         </clade>
4438                       </clade>
4439                       <clade>
4440                         <taxonomy>
4441                           <id provider="uniprot">13773</id>
4442                           <code>PYRAE</code>
4443                           <scientific_name>Pyrobaculum aerophilum</scientific_name>
4444                           <rank>species</rank>
4445                         </taxonomy>
4446                       </clade>
4447                     </clade>
4448                     <clade>
4449                       <name>a_70</name>
4450                       <clade>
4451                         <taxonomy>
4452                           <id provider="uniprot">384616</id>
4453                           <code>PYRIL</code>
4454                           <scientific_name>Pyrobaculum islandicum (strain DSM 4184 / JCM 9189)</scientific_name>
4455                         </taxonomy>
4456                       </clade>
4457                       <clade>
4458                         <taxonomy>
4459                           <id provider="uniprot">444157</id>
4460                           <code>THENV</code>
4461                           <scientific_name>Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta)</scientific_name>
4462                         </taxonomy>
4463                       </clade>
4464                     </clade>
4465                   </clade>
4466                   <clade>
4467                     <taxonomy>
4468                       <id provider="uniprot">397948</id>
4469                       <code>CALMQ</code>
4470                       <scientific_name>Caldivirga maquilingensis (strain ATCC 700844 / DSMZ 13496 / JCM 10307 / IC-167)</scientific_name>
4471                     </taxonomy>
4472                   </clade>
4473                 </clade>
4474                 <clade>
4475                   <name>a_80</name>
4476                   <taxonomy>
4477                     <id provider="uniprot">118883</id>
4478                     <scientific_name>Sulfolobaceae</scientific_name>
4479                     <rank>family</rank>
4480                   </taxonomy>
4481                   <clade>
4482                     <name>a_78</name>
4483                     <taxonomy>
4484                       <id provider="uniprot">2284</id>
4485                       <scientific_name>Sulfolobus</scientific_name>
4486                       <rank>genus</rank>
4487                     </taxonomy>
4488                     <clade>
4489                       <name>a_76</name>
4490                       <clade>
4491                         <taxonomy>
4492                           <id provider="uniprot">2285</id>
4493                           <code>SULAC</code>
4494                           <scientific_name>Sulfolobus acidocaldarius</scientific_name>
4495                           <rank>species</rank>
4496                         </taxonomy>
4497                       </clade>
4498                       <clade>
4499                         <taxonomy>
4500                           <id provider="uniprot">273063</id>
4501                           <code>SULTO</code>
4502                           <scientific_name>Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)</scientific_name>
4503                         </taxonomy>
4504                       </clade>
4505                     </clade>
4506                     <clade>
4507                       <taxonomy>
4508                         <id provider="uniprot">2287</id>
4509                         <code>SULSO</code>
4510                         <scientific_name>Sulfolobus solfataricus</scientific_name>
4511                         <rank>species</rank>
4512                       </taxonomy>
4513                     </clade>
4514                   </clade>
4515                   <clade>
4516                     <taxonomy>
4517                       <id provider="uniprot">399549</id>
4518                       <code>METS5</code>
4519                       <scientific_name>Metallosphaera sedula (strain ATCC 51363 / DSM 5348)</scientific_name>
4520                     </taxonomy>
4521                   </clade>
4522                 </clade>
4523               </clade>
4524               <clade>
4525                 <taxonomy>
4526                   <id provider="uniprot">56636</id>
4527                   <code>AERPE</code>
4528                   <scientific_name>Aeropyrum pernix</scientific_name>
4529                   <rank>species</rank>
4530                 </taxonomy>
4531               </clade>
4532             </clade>
4533             <clade>
4534               <name>a_90</name>
4535               <clade>
4536                 <name>a_88</name>
4537                 <clade>
4538                   <name>a_86</name>
4539                   <clade>
4540                     <taxonomy>
4541                       <id provider="uniprot">399550</id>
4542                       <code>STAMF</code>
4543                       <scientific_name>Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1)</scientific_name>
4544                     </taxonomy>
4545                   </clade>
4546                   <clade>
4547                     <taxonomy>
4548                       <id provider="uniprot">368408</id>
4549                       <code>THEPD</code>
4550                       <scientific_name>Thermofilum pendens (strain Hrk 5)</scientific_name>
4551                     </taxonomy>
4552                   </clade>
4553                 </clade>
4554                 <clade>
4555                   <taxonomy>
4556                     <id provider="uniprot">415426</id>
4557                     <code>HYPBU</code>
4558                     <scientific_name>Hyperthermus butylicus (strain DSM 5456 / JCM 9403)</scientific_name>
4559                   </taxonomy>
4560                 </clade>
4561               </clade>
4562               <clade>
4563                 <taxonomy>
4564                   <id provider="uniprot">453591</id>
4565                   <code>IGNH4</code>
4566                   <scientific_name>Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125)</scientific_name>
4567                 </taxonomy>
4568               </clade>
4569             </clade>
4570           </clade>
4571           <clade>
4572             <taxonomy>
4573               <id provider="uniprot">374847</id>
4574               <code>KORCO</code>
4575               <scientific_name>Korarchaeum cryptofilum (strain OPF8)</scientific_name>
4576             </taxonomy>
4577           </clade>
4578         </clade>
4579       </clade>
4580     </clade>
4581     <clade>
4582       <taxonomy>
4583         <id provider="uniprot">2</id>
4584         <scientific_name>Bacteria</scientific_name>
4585         <rank>superkingdom</rank>
4586       </taxonomy>
4587       <clade>
4588         <name>b_278</name>
4589         <clade>
4590           <name>b_268</name>
4591           <clade>
4592             <name>b_226</name>
4593             <clade>
4594               <name>b_200</name>
4595               <clade>
4596                 <name>b_194</name>
4597                 <clade>
4598                   <name>b_104</name>
4599                   <clade>
4600                     <name>b_80</name>
4601                     <clade>
4602                       <taxonomy>
4603                         <id provider="uniprot">1224</id>
4604                         <scientific_name>Proteobacteria</scientific_name>
4605                         <rank>phylum</rank>
4606                       </taxonomy>
4607                       <clade>
4608                         <name>b_52</name>
4609                         <clade>
4610                           <name>b_44</name>
4611                           <clade>
4612                             <name>b_30</name>
4613                             <clade>
4614                               <name>b_24</name>
4615                               <taxonomy>
4616                                 <id provider="uniprot">1236</id>
4617                                 <scientific_name>Gammaproteobacteria</scientific_name>
4618                                 <rank>class</rank>
4619                               </taxonomy>
4620                               <clade>
4621                                 <name>b_16</name>
4622                                 <clade>
4623                                   <name>b_10</name>
4624                                   <taxonomy>
4625                                     <id provider="uniprot">543</id>
4626                                     <scientific_name>Enterobacteriaceae</scientific_name>
4627                                     <rank>family</rank>
4628                                   </taxonomy>
4629                                   <clade>
4630                                     <name>b_8</name>
4631                                     <clade>
4632                                       <name>b_6</name>
4633                                       <clade>
4634                                         <name>b_4</name>
4635                                         <clade>
4636                                           <name>b_2</name>
4637                                           <taxonomy>
4638                                             <id provider="uniprot">561</id>
4639                                             <scientific_name>Escherichia</scientific_name>
4640                                             <rank>genus</rank>
4641                                           </taxonomy>
4642                                           <clade>
4643                                             <taxonomy>
4644                                               <id provider="uniprot">83333</id>
4645                                               <code>ECOLI</code>
4646                                               <scientific_name>Escherichia coli (strain K12)</scientific_name>
4647                                             </taxonomy>
4648                                           </clade>
4649                                           <clade>
4650                                             <taxonomy>
4651                                               <id provider="uniprot">83334</id>
4652                                               <code>ECO57</code>
4653                                               <scientific_name>Escherichia coli O157:H7</scientific_name>
4654                                             </taxonomy>
4655                                           </clade>
4656                                         </clade>
4657                                         <clade>
4658                                           <taxonomy>
4659                                             <id provider="uniprot">623</id>
4660                                             <code>SHIFL</code>
4661                                             <scientific_name>Shigella flexneri</scientific_name>
4662                                             <rank>species</rank>
4663                                           </taxonomy>
4664                                         </clade>
4665                                       </clade>
4666                                       <clade>
4667                                         <taxonomy>
4668                                           <id provider="uniprot">90371</id>
4669                                           <code>SALTY</code>
4670                                           <scientific_name>Salmonella typhimurium</scientific_name>
4671                                         </taxonomy>
4672                                       </clade>
4673                                     </clade>
4674                                     <clade>
4675                                       <taxonomy>
4676                                         <id provider="uniprot">632</id>
4677                                         <code>YERPE</code>
4678                                         <scientific_name>Yersinia pestis</scientific_name>
4679                                         <rank>species</rank>
4680                                       </taxonomy>
4681                                     </clade>
4682                                   </clade>
4683                                   <clade>
4684                                     <taxonomy>
4685                                       <id provider="uniprot">29488</id>
4686                                       <code>PHOLU</code>
4687                                       <scientific_name>Photorhabdus luminescens</scientific_name>
4688                                       <synonym>Xenorhabdus luminescens</synonym>
4689                                       <rank>species</rank>
4690                                     </taxonomy>
4691                                   </clade>
4692                                 </clade>
4693                                 <clade>
4694                                   <name>b_15</name>
4695                                   <clade>
4696                                     <name>b_13</name>
4697                                     <taxonomy>
4698                                       <id provider="uniprot">641</id>
4699                                       <scientific_name>Vibrionaceae</scientific_name>
4700                                       <rank>family</rank>
4701                                     </taxonomy>
4702                                     <clade>
4703                                       <taxonomy>
4704                                         <id provider="uniprot">74109</id>
4705                                         <code>PHOPR</code>
4706                                         <scientific_name>Photobacterium profundum</scientific_name>
4707                                         <synonym>Photobacterium sp. (strain SS9)</synonym>
4708                                         <rank>species</rank>
4709                                       </taxonomy>
4710                                     </clade>
4711                                     <clade>
4712                                       <taxonomy>
4713                                         <id provider="uniprot">666</id>
4714                                         <code>VIBCH</code>
4715                                         <scientific_name>Vibrio cholerae</scientific_name>
4716                                         <rank>species</rank>
4717                                       </taxonomy>
4718                                     </clade>
4719                                   </clade>
4720                                   <clade>
4721                                     <taxonomy>
4722                                       <id provider="uniprot">318161</id>
4723                                       <code>SHEDO</code>
4724                                       <scientific_name>Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013)</scientific_name>
4725                                     </taxonomy>
4726                                   </clade>
4727                                 </clade>
4728                               </clade>
4729                               <clade>
4730                                 <name>b_23</name>
4731                                 <clade>
4732                                   <name>b_21</name>
4733                                   <taxonomy>
4734                                     <id provider="uniprot">286</id>
4735                                     <scientific_name>Pseudomonas</scientific_name>
4736                                     <rank>genus</rank>
4737                                   </taxonomy>
4738                                   <clade>
4739                                     <name>b_19</name>
4740                                     <clade>
4741                                       <taxonomy>
4742                                         <id provider="uniprot">220664</id>
4743                                         <code>PSEF5</code>
4744                                         <scientific_name>Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477)</scientific_name>
4745                                       </taxonomy>
4746                                     </clade>
4747                                     <clade>
4748                                       <taxonomy>
4749                                         <id provider="uniprot">205922</id>
4750                                         <code>PSEPF</code>
4751                                         <scientific_name>Pseudomonas fluorescens (strain Pf0-1)</scientific_name>
4752                                       </taxonomy>
4753                                     </clade>
4754                                   </clade>
4755                                   <clade>
4756                                     <taxonomy>
4757                                       <id provider="uniprot">287</id>
4758                                       <code>PSEAE</code>
4759                                       <scientific_name>Pseudomonas aeruginosa</scientific_name>
4760                                       <rank>species</rank>
4761                                     </taxonomy>
4762                                   </clade>
4763                                 </clade>
4764                                 <clade>
4765                                   <taxonomy>
4766                                     <id provider="uniprot">290398</id>
4767                                     <code>CHRSD</code>
4768                                     <scientific_name>Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768)</scientific_name>
4769                                   </taxonomy>
4770                                 </clade>
4771                               </clade>
4772                             </clade>
4773                             <clade>
4774                               <name>b_29</name>
4775                               <taxonomy>
4776                                 <id provider="uniprot">28216</id>
4777                                 <scientific_name>Betaproteobacteria</scientific_name>
4778                                 <rank>class</rank>
4779                               </taxonomy>
4780                               <clade>
4781                                 <taxonomy>
4782                                   <id provider="uniprot">159087</id>
4783                                   <code>DECAR</code>
4784                                   <scientific_name>Dechloromonas aromatica (strain RCB)</scientific_name>
4785                                 </taxonomy>
4786                               </clade>
4787                               <clade>
4788                                 <taxonomy>
4789                                   <id provider="uniprot">266264</id>
4790                                   <code>RALME</code>
4791                                   <scientific_name>Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839)</scientific_name>
4792                                 </taxonomy>
4793                               </clade>
4794                             </clade>
4795                           </clade>
4796                           <clade>
4797                             <name>b_43</name>
4798                             <clade>
4799                               <name>b_41</name>
4800                               <clade>
4801                                 <name>b_35</name>
4802                                 <taxonomy>
4803                                   <id provider="uniprot">28216</id>
4804                                   <scientific_name>Betaproteobacteria</scientific_name>
4805                                   <rank>class</rank>
4806                                 </taxonomy>
4807                                 <clade>
4808                                   <name>b_33</name>
4809                                   <taxonomy>
4810                                     <id provider="uniprot">206379</id>
4811                                     <scientific_name>Nitrosomonadaceae</scientific_name>
4812                                     <rank>family</rank>
4813                                   </taxonomy>
4814                                   <clade>
4815                                     <taxonomy>
4816                                       <id provider="uniprot">915</id>
4817                                       <code>NITEU</code>
4818                                       <scientific_name>Nitrosomonas europaea</scientific_name>
4819                                       <rank>species</rank>
4820                                     </taxonomy>
4821                                   </clade>
4822                                   <clade>
4823                                     <taxonomy>
4824                                       <id provider="uniprot">323848</id>
4825                                       <code>NITMU</code>
4826                                       <scientific_name>Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849)</scientific_name>
4827                                     </taxonomy>
4828                                   </clade>
4829                                 </clade>
4830                                 <clade>
4831                                   <taxonomy>
4832                                     <id provider="uniprot">36861</id>
4833                                     <code>THIDE</code>
4834                                     <scientific_name>Thiobacillus denitrificans</scientific_name>
4835                                     <rank>species</rank>
4836                                   </taxonomy>
4837                                 </clade>
4838                               </clade>
4839                               <clade>
4840                                 <name>b_40</name>
4841                                 <taxonomy>
4842                                   <id provider="uniprot">135613</id>
4843                                   <scientific_name>Chromatiales</scientific_name>
4844                                   <rank>order</rank>
4845                                 </taxonomy>
4846                                 <clade>
4847                                   <name>b_38</name>
4848                                   <taxonomy>
4849                                     <id provider="uniprot">72276</id>
4850                                     <scientific_name>Ectothiorhodospiraceae</scientific_name>
4851                                     <common_name>purple sulfur bacteria</common_name>
4852                                     <rank>family</rank>
4853                                   </taxonomy>
4854                                   <clade>
4855                                     <taxonomy>
4856                                       <id provider="uniprot">187272</id>
4857                                       <code>ALHEH</code>
4858                                       <scientific_name>Alkalilimnicola ehrlichei (strain MLHE-1)</scientific_name>
4859                                     </taxonomy>
4860                                   </clade>
4861                                   <clade>
4862                                     <taxonomy>
4863                                       <id provider="uniprot">349124</id>
4864                                       <code>HALHL</code>
4865                                       <scientific_name>Halorhodospira halophila (strain DSM 244 / SL1)</scientific_name>
4866                                       <synonym>Ectothiorhodospira halophila (strain DSM 244 / SL1)</synonym>
4867                                     </taxonomy>
4868                                   </clade>
4869                                 </clade>
4870                                 <clade>
4871                                   <taxonomy>
4872                                     <id provider="uniprot">323261</id>
4873                                     <code>NITOC</code>
4874                                     <scientific_name>Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848)</scientific_name>
4875                                   </taxonomy>
4876                                 </clade>
4877                               </clade>
4878                             </clade>
4879                             <clade>
4880                               <taxonomy>
4881                                 <id provider="uniprot">317025</id>
4882                                 <code>THICR</code>
4883                                 <scientific_name>Thiomicrospira crunogena (strain XCL-2)</scientific_name>
4884                               </taxonomy>
4885                             </clade>
4886                           </clade>
4887                         </clade>
4888                         <clade>
4889                           <name>b_51</name>
4890                           <taxonomy>
4891                             <id provider="uniprot">1236</id>
4892                             <scientific_name>Gammaproteobacteria</scientific_name>
4893                             <rank>class</rank>
4894                           </taxonomy>
4895                           <clade>
4896                             <name>b_47</name>
4897                             <clade>
4898                               <taxonomy>
4899                                 <id provider="uniprot">135577</id>
4900                                 <code>IDILO</code>
4901                                 <scientific_name>Idiomarina loihiensis</scientific_name>
4902                                 <rank>species</rank>
4903                               </taxonomy>
4904                             </clade>
4905                             <clade>
4906                               <taxonomy>
4907                                 <id provider="uniprot">446</id>
4908                                 <code>LEGPN</code>
4909                                 <scientific_name>Legionella pneumophila</scientific_name>
4910                                 <rank>species</rank>
4911                               </taxonomy>
4912                             </clade>
4913                           </clade>
4914                           <clade>
4915                             <name>b_50</name>
4916                             <taxonomy>
4917                               <id provider="uniprot">32033</id>
4918                               <scientific_name>Xanthomonadaceae</scientific_name>
4919                               <rank>family</rank>
4920                             </taxonomy>
4921                             <clade>
4922                               <taxonomy>
4923                                 <id provider="uniprot">92829</id>
4924                                 <code>XANAC</code>
4925                                 <scientific_name>Xanthomonas axonopodis pv. citri</scientific_name>
4926                                 <common_name>Citrus canker</common_name>
4927                               </taxonomy>
4928                             </clade>
4929                             <clade>
4930                               <taxonomy>
4931                                 <id provider="uniprot">183190</id>
4932                                 <code>XYLFT</code>
4933                                 <scientific_name>Xylella fastidiosa (strain Temecula1 / ATCC 700964)</scientific_name>
4934                               </taxonomy>
4935                             </clade>
4936                           </clade>
4937                         </clade>
4938                       </clade>
4939                       <clade>
4940                         <name>b_71</name>
4941                         <taxonomy>
4942                           <id provider="uniprot">28211</id>
4943                           <scientific_name>Alphaproteobacteria</scientific_name>
4944                           <rank>class</rank>
4945                         </taxonomy>
4946                         <clade>
4947                           <name>b_67</name>
4948                           <clade>
4949                             <name>b_65</name>
4950                             <clade>
4951                               <name>b_61</name>
4952                               <taxonomy>
4953                                 <id provider="uniprot">356</id>
4954                                 <scientific_name>Rhizobiales</scientific_name>
4955                                 <rank>order</rank>
4956                               </taxonomy>
4957                               <clade>
4958                                 <name>b_57</name>
4959                                 <taxonomy>
4960                                   <id provider="uniprot">227290</id>
4961                                   <scientific_name>Rhizobium/Agrobacterium group</scientific_name>
4962                                 </taxonomy>
4963                                 <clade>
4964                                   <taxonomy>
4965                                     <id provider="uniprot">176299</id>
4966                                     <code>AGRT5</code>
4967                                     <scientific_name>Agrobacterium tumefaciens (strain C58 / ATCC 33970)</scientific_name>
4968                                   </taxonomy>
4969                                 </clade>
4970                                 <clade>
4971                                   <taxonomy>
4972                                     <id provider="uniprot">347834</id>
4973                                     <code>RHIEC</code>
4974                                     <scientific_name>Rhizobium etli (strain CFN 42 / ATCC 51251)</scientific_name>
4975                                   </taxonomy>
4976                                 </clade>
4977                               </clade>
4978                               <clade>
4979                                 <name>b_60</name>
4980                                 <taxonomy>
4981                                   <id provider="uniprot">41294</id>
4982                                   <scientific_name>Bradyrhizobiaceae</scientific_name>
4983                                   <rank>family</rank>
4984                                 </taxonomy>
4985                                 <clade>
4986                                   <taxonomy>
4987                                     <id provider="uniprot">375</id>
4988                                     <code>BRAJA</code>
4989                                     <scientific_name>Bradyrhizobium japonicum</scientific_name>
4990                                     <rank>species</rank>
4991                                   </taxonomy>
4992                                 </clade>
4993                                 <clade>
4994                                   <taxonomy>
4995                                     <id provider="uniprot">395960</id>
4996                                     <code>RHOPT</code>
4997                                     <scientific_name>Rhodopseudomonas palustris (strain TIE-1)</scientific_name>
4998                                   </taxonomy>
4999                                 </clade>
5000                               </clade>
5001                             </clade>
5002                             <clade>
5003                               <name>b_64</name>
5004                               <taxonomy>
5005                                 <id provider="uniprot">31989</id>
5006                                 <scientific_name>Rhodobacteraceae</scientific_name>
5007                                 <rank>family</rank>
5008                               </taxonomy>
5009                               <clade>
5010                                 <taxonomy>
5011                                   <id provider="uniprot">349101</id>
5012                                   <code>RHOS1</code>
5013                                   <scientific_name>Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9)</scientific_name>
5014                                 </taxonomy>
5015                               </clade>
5016                               <clade>
5017                                 <taxonomy>
5018                                   <id provider="uniprot">375451</id>
5019                                   <code>ROSDO</code>
5020                                   <scientific_name>Roseobacter denitrificans (strain ATCC 33942 / OCh 114)</scientific_name>
5021                                   <common_name>Erythrobacter sp. (strain OCh 114)</common_name>
5022                                   <synonym>Roseobacter denitrificans</synonym>
5023                                 </taxonomy>
5024                               </clade>
5025                             </clade>
5026                           </clade>
5027                           <clade>
5028                             <taxonomy>
5029                               <id provider="uniprot">155892</id>
5030                               <code>CAUCR</code>
5031                               <scientific_name>Caulobacter crescentus</scientific_name>
5032                               <synonym>Caulobacter vibrioides</synonym>
5033                               <rank>species</rank>
5034                             </taxonomy>
5035                           </clade>
5036                         </clade>
5037                         <clade>
5038                           <name>b_70</name>
5039                           <taxonomy>
5040                             <id provider="uniprot">204441</id>
5041                             <scientific_name>Rhodospirillales</scientific_name>
5042                             <rank>order</rank>
5043                           </taxonomy>
5044                           <clade>
5045                             <taxonomy>
5046                               <id provider="uniprot">524</id>
5047                               <code>ACICY</code>
5048                               <scientific_name>Acidiphilium cryptum</scientific_name>
5049                               <rank>species</rank>
5050                             </taxonomy>
5051                           </clade>
5052                           <clade>
5053                             <taxonomy>
5054                               <id provider="uniprot">1085</id>
5055                               <code>RHORU</code>
5056                               <scientific_name>Rhodospirillum rubrum</scientific_name>
5057                               <rank>species</rank>
5058                             </taxonomy>
5059                           </clade>
5060                         </clade>
5061                       </clade>
5062                     </clade>
5063                     <clade>
5064                       <name>b_79</name>
5065                       <clade>
5066                         <name>b_77</name>
5067                         <taxonomy>
5068                           <id provider="uniprot">1224</id>
5069                           <scientific_name>Proteobacteria</scientific_name>
5070                           <rank>phylum</rank>
5071                         </taxonomy>
5072                         <clade>
5073                           <name>b_75</name>
5074                           <taxonomy>
5075                             <id provider="uniprot">712</id>
5076                             <scientific_name>Pasteurellaceae</scientific_name>
5077                             <rank>family</rank>
5078                           </taxonomy>
5079                           <clade>
5080                             <taxonomy>
5081                               <id provider="uniprot">727</id>
5082                               <code>HAEIN</code>
5083                               <scientific_name>Haemophilus influenzae</scientific_name>
5084                               <rank>species</rank>
5085                             </taxonomy>
5086                           </clade>
5087                           <clade>
5088                             <taxonomy>
5089                               <id provider="uniprot">747</id>
5090                               <code>PASMU</code>
5091                               <scientific_name>Pasteurella multocida</scientific_name>
5092                               <rank>species</rank>
5093                             </taxonomy>
5094                           </clade>
5095                         </clade>
5096                         <clade>
5097                           <taxonomy>
5098                             <id provider="uniprot">487</id>
5099                             <code>NEIME</code>
5100                             <scientific_name>Neisseria meningitidis</scientific_name>
5101                             <rank>species</rank>
5102                           </taxonomy>
5103                         </clade>
5104                       </clade>
5105                       <clade>
5106                         <taxonomy>
5107                           <id provider="uniprot">905</id>
5108                           <code>ACIFE</code>
5109                           <scientific_name>Acidaminococcus fermentans</scientific_name>
5110                           <rank>species</rank>
5111                         </taxonomy>
5112                       </clade>
5113                     </clade>
5114                   </clade>
5115                   <clade>
5116                     <name>b_103</name>
5117                     <clade>
5118                       <name>b_91</name>
5119                       <taxonomy>
5120                         <id provider="uniprot">28221</id>
5121                         <scientific_name>Deltaproteobacteria</scientific_name>
5122                         <rank>class</rank>
5123                       </taxonomy>
5124                       <clade>
5125                         <name>b_87</name>
5126                         <clade>
5127                           <name>b_83</name>
5128                           <clade>
5129                             <taxonomy>
5130                               <id provider="uniprot">84980</id>
5131                               <code>DESPS</code>
5132                               <scientific_name>Desulfotalea psychrophila</scientific_name>
5133                               <rank>species</rank>
5134                             </taxonomy>
5135                           </clade>
5136                           <clade>
5137                             <taxonomy>
5138                               <id provider="uniprot">876</id>
5139                               <code>DESDE</code>
5140                               <scientific_name>Desulfovibrio desulfuricans</scientific_name>
5141                               <rank>species</rank>
5142                             </taxonomy>
5143                           </clade>
5144                         </clade>
5145                         <clade>
5146                           <taxonomy>
5147                             <id provider="uniprot">56780</id>
5148                             <code>SYNAS</code>
5149                             <scientific_name>Syntrophus aciditrophicus (strain SB)</scientific_name>
5150                           </taxonomy>
5151                         </clade>
5152                       </clade>
5153                       <clade>
5154                         <name>b_90</name>
5155                         <taxonomy>
5156                           <id provider="uniprot">28231</id>
5157                           <scientific_name>Geobacter</scientific_name>
5158                           <rank>genus</rank>
5159                         </taxonomy>
5160                         <clade>
5161                           <taxonomy>
5162                             <id provider="uniprot">28232</id>
5163                             <code>GEOME</code>
5164                             <scientific_name>Geobacter metallireducens</scientific_name>
5165                             <rank>species</rank>
5166                           </taxonomy>
5167                         </clade>
5168                         <clade>
5169                           <taxonomy>
5170                             <id provider="uniprot">35554</id>
5171                             <code>GEOSL</code>
5172                             <scientific_name>Geobacter sulfurreducens</scientific_name>
5173                             <rank>species</rank>
5174                           </taxonomy>
5175                         </clade>
5176                       </clade>
5177                     </clade>
5178                     <clade>
5179                       <name>b_102</name>
5180                       <clade>
5181                         <name>b_98</name>
5182                         <clade>
5183                           <name>b_94</name>
5184                           <taxonomy>
5185                             <id provider="uniprot">31</id>
5186                             <scientific_name>Myxococcaceae</scientific_name>
5187                             <rank>family</rank>
5188                           </taxonomy>
5189                           <clade>
5190                             <taxonomy>
5191                               <id provider="uniprot">290397</id>
5192                               <code>ANADE</code>
5193                               <scientific_name>Anaeromyxobacter dehalogenans (strain 2CP-C)</scientific_name>
5194                             </taxonomy>
5195                           </clade>
5196                           <clade>
5197                             <taxonomy>
5198                               <id provider="uniprot">34</id>
5199                               <code>MYXXA</code>
5200                               <scientific_name>Myxococcus xanthus</scientific_name>
5201                               <rank>species</rank>
5202                             </taxonomy>
5203                           </clade>
5204                         </clade>
5205                         <clade>
5206                           <name>b_97</name>
5207                           <taxonomy>
5208                             <id provider="uniprot">57723</id>
5209                             <scientific_name>Acidobacteria</scientific_name>
5210                             <rank>phylum</rank>
5211                           </taxonomy>
5212                           <clade>
5213                             <taxonomy>
5214                               <id provider="uniprot">204669</id>
5215                               <code>ACIBL</code>
5216                               <scientific_name>Acidobacteria bacterium (strain Ellin345)</scientific_name>
5217                             </taxonomy>
5218                           </clade>
5219                           <clade>
5220                             <taxonomy>
5221                               <id provider="uniprot">332163</id>
5222                               <code>SOLUS</code>
5223                               <scientific_name>Solibacter usitatus</scientific_name>
5224                               <rank>species</rank>
5225                             </taxonomy>
5226                           </clade>
5227                         </clade>
5228                       </clade>
5229                       <clade>
5230                         <taxonomy>
5231                           <id provider="uniprot">265606</id>
5232                           <code>RHOBA</code>
5233                           <scientific_name>Rhodopirellula baltica</scientific_name>
5234                           <rank>species</rank>
5235                         </taxonomy>
5236                       </clade>
5237                     </clade>
5238                   </clade>
5239                 </clade>
5240                 <clade>
5241                   <name>b_193</name>
5242                   <clade>
5243                     <name>b_163</name>
5244                     <clade>
5245                       <name>b_133</name>
5246                       <clade>
5247                         <name>Chloroflexi &amp; Actinobacteria</name>
5248                         <clade>
5249                           <taxonomy>
5250                             <id provider="uniprot">200795</id>
5251                             <scientific_name>Chloroflexi</scientific_name>
5252                             <common_name>GNS bacteria</common_name>
5253                             <synonym>Thermomicrobia</synonym>
5254                             <rank>phylum</rank>
5255                           </taxonomy>
5256                           <clade>
5257                             <taxonomy>
5258                               <id provider="uniprot">32061</id>
5259                               <scientific_name>Chloroflexi (class)</scientific_name>
5260                               <synonym>Chloroflecales</synonym>
5261                               <synonym>Chloroflexus/Deinococcus group</synonym>
5262                               <rank>class</rank>
5263                             </taxonomy>
5264                             <clade>
5265                               <name>b_122</name>
5266                               <taxonomy>
5267                                 <id provider="uniprot">1106</id>
5268                                 <scientific_name>Chloroflexaceae</scientific_name>
5269                                 <common_name>filamentous anoxygenic phototrophic bacteria</common_name>
5270                                 <rank>family</rank>
5271                               </taxonomy>
5272                               <clade>
5273                                 <taxonomy>
5274                                   <id provider="uniprot">1108</id>
5275                                   <code>CHLAU</code>
5276                                   <scientific_name>Chloroflexus aurantiacus</scientific_name>
5277                                   <rank>species</rank>
5278                                 </taxonomy>
5279                               </clade>
5280                               <clade>
5281                                 <taxonomy>
5282                                   <id provider="uniprot">383372</id>
5283                                   <code>ROSCS</code>
5284                                   <scientific_name>Roseiflexus castenholzii (strain DSM 13941 / HLO8)</scientific_name>
5285                                   <rank>species</rank>
5286                                 </taxonomy>
5287                               </clade>
5288                             </clade>
5289                             <clade>
5290                               <taxonomy>
5291                                 <id provider="uniprot">65</id>
5292                                 <code>HERAU</code>
5293                                 <scientific_name>Herpetosiphon aurantiacus</scientific_name>
5294                                 <synonym>Herpetosiphon giganteus</synonym>
5295                                 <rank>species</rank>
5296                               </taxonomy>
5297                             </clade>
5298                           </clade>
5299                           <clade>
5300                             <taxonomy>
5301                               <id provider="uniprot">479434</id>
5302                               <code>SPHTD</code>
5303                               <scientific_name>Sphaerobacter thermophilus (strain DSM 20745 / S 6022)</scientific_name>
5304                               <rank>strain</rank>
5305                             </taxonomy>
5306                           </clade>
5307                         </clade>
5308                         <clade>
5309                           <taxonomy>
5310                             <id provider="uniprot">201174</id>
5311                             <scientific_name>Actinobacteria</scientific_name>
5312                             <rank>phylum</rank>
5313                           </taxonomy>
5314                           <clade>
5315                             <taxonomy>
5316                               <id provider="uniprot">2037</id>
5317                               <scientific_name>Actinomycetales</scientific_name>
5318                               <rank>order</rank>
5319                             </taxonomy>
5320                             <clade>
5321                               <name>b_115</name>
5322                               <clade>
5323                                 <taxonomy>
5324                                   <id provider="uniprot">266940</id>
5325                                   <code>KINRD</code>
5326                                   <scientific_name>Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216)</scientific_name>
5327                                 </taxonomy>
5328                               </clade>
5329                               <clade>
5330                                 <taxonomy>
5331                                   <id provider="uniprot">378753</id>
5332                                   <code>KOCRD</code>
5333                                   <scientific_name>Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201)</scientific_name>
5334                                 </taxonomy>
5335                               </clade>
5336                               <clade>
5337                                 <taxonomy>
5338                                   <id provider="uniprot">1902</id>
5339                                   <code>STRCO</code>
5340                                   <scientific_name>Streptomyces coelicolor</scientific_name>
5341                                   <rank>species</rank>
5342                                 </taxonomy>
5343                               </clade>
5344                               <clade>
5345                                 <taxonomy>
5346                                   <id provider="uniprot">269800</id>
5347                                   <code>THEFY</code>
5348                                   <scientific_name>Thermobifida fusca (strain YX)</scientific_name>
5349                                 </taxonomy>
5350                               </clade>
5351                               <clade>
5352                                 <taxonomy>
5353                                   <id provider="uniprot">1032480</id>
5354                                   <code>MICPN</code>
5355                                   <scientific_name>Microlunatus phosphovorus (strain ATCC 700054 / DSM 10555 / JCM 9379 / NBRC 101784 / NCIMB 13414 / VKM Ac-1990 / NM-1)</scientific_name>
5356                                   <common_name>Microlunatus phosphovorus NM-1</common_name>
5357                                   <rank>strain</rank>
5358                                 </taxonomy>
5359                               </clade>
5360                             </clade>
5361                             <clade>
5362                               <taxonomy>
5363                                 <id provider="uniprot">85007</id>
5364                                 <scientific_name>Corynebacterineae</scientific_name>
5365                                 <rank>suborder</rank>
5366                               </taxonomy>
5367                               <clade>
5368                                 <taxonomy>
5369                                   <id provider="uniprot">1763</id>
5370                                   <scientific_name>Mycobacterium</scientific_name>
5371                                   <rank>genus</rank>
5372                                 </taxonomy>
5373                                 <clade>
5374                                   <taxonomy>
5375                                     <id provider="uniprot">1769</id>
5376                                     <code>MYCLE</code>
5377                                     <scientific_name>Mycobacterium leprae</scientific_name>
5378                                     <rank>species</rank>
5379                                   </taxonomy>
5380                                 </clade>
5381                                 <clade>
5382                                   <taxonomy>
5383                                     <id provider="uniprot">1773</id>
5384                                     <code>MYCTU</code>
5385                                     <scientific_name>Mycobacterium tuberculosis</scientific_name>
5386                                     <rank>species</rank>
5387                                   </taxonomy>
5388                                 </clade>
5389                               </clade>
5390                               <clade>
5391                                 <taxonomy>
5392                                   <id provider="uniprot">306537</id>
5393                                   <code>CORJK</code>
5394                                   <scientific_name>Corynebacterium jeikeium (strain K411)</scientific_name>
5395                                 </taxonomy>
5396                               </clade>
5397                               <clade>
5398                                 <taxonomy>
5399                                   <id provider="uniprot">632772</id>
5400                                   <code>RHOOB</code>
5401                                   <scientific_name>Rhodococcus opacus (strain B4)</scientific_name>
5402                                   <rank>strain</rank>
5403                                 </taxonomy>
5404                               </clade>
5405                             </clade>
5406                           </clade>
5407                           <clade>
5408                             <taxonomy>
5409                               <id provider="uniprot">266117</id>
5410                               <code>RUBXD</code>
5411                               <scientific_name>Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129)</scientific_name>
5412                             </taxonomy>
5413                           </clade>
5414                         </clade>
5415                       </clade>
5416                       <clade>
5417                         <name>b_132</name>
5418                         <taxonomy>
5419                           <id provider="uniprot">188787</id>
5420                           <scientific_name>Deinococci</scientific_name>
5421                           <rank>class</rank>
5422                         </taxonomy>
5423                         <clade>
5424                           <name>b_130</name>
5425                           <taxonomy>
5426                             <id provider="uniprot">1298</id>
5427                             <scientific_name>Deinococcus</scientific_name>
5428                             <rank>genus</rank>
5429                           </taxonomy>
5430                           <clade>
5431                             <taxonomy>
5432                               <id provider="uniprot">319795</id>
5433                               <code>DEIGD</code>
5434                               <scientific_name>Deinococcus geothermalis (strain DSM 11300)</scientific_name>
5435                             </taxonomy>
5436                           </clade>
5437                           <clade>
5438                             <taxonomy>
5439                               <id provider="uniprot">1299</id>
5440                               <code>DEIRA</code>
5441                               <scientific_name>Deinococcus radiodurans</scientific_name>
5442                               <rank>species</rank>
5443                             </taxonomy>
5444                           </clade>
5445                         </clade>
5446                         <clade>
5447                           <taxonomy>
5448                             <id provider="uniprot">274</id>
5449                             <code>THETH</code>
5450                             <scientific_name>Thermus thermophilus</scientific_name>
5451                             <rank>species</rank>
5452                           </taxonomy>
5453                         </clade>
5454                       </clade>
5455                     </clade>
5456                     <clade>
5457                       <name>b_162</name>
5458                       <taxonomy>
5459                         <id provider="uniprot">1117</id>
5460                         <scientific_name>Cyanobacteria</scientific_name>
5461                         <rank>phylum</rank>
5462                       </taxonomy>
5463                       <clade>
5464                         <name>b_154</name>
5465                         <clade>
5466                           <name>b_152</name>
5467                           <clade>
5468                             <name>b_146</name>
5469                             <clade>
5470                               <name>b_144</name>
5471                               <clade>
5472                                 <name>b_142</name>
5473                                 <clade>
5474                                   <name>b_138</name>
5475                                   <taxonomy>
5476                                     <id provider="uniprot">1162</id>
5477                                     <scientific_name>Nostocaceae</scientific_name>
5478                                     <rank>family</rank>
5479                                   </taxonomy>
5480                                   <clade>
5481                                     <name>b_136</name>
5482                                     <clade>
5483                                       <taxonomy>
5484                                         <id provider="uniprot">1172</id>
5485                                         <code>ANAVA</code>
5486                                         <scientific_name>Anabaena variabilis</scientific_name>
5487                                         <rank>species</rank>
5488                                       </taxonomy>
5489                                     </clade>
5490                                     <clade>
5491                                       <taxonomy>
5492                                         <id provider="uniprot">28072</id>
5493                                         <code>NOSS7</code>
5494                                         <scientific_name>Nostoc sp. (strain PCC 7524)</scientific_name>
5495                                         <rank>species</rank>
5496                                       </taxonomy>
5497                                     </clade>
5498                                   </clade>
5499                                   <clade>
5500                                     <taxonomy>
5501                                       <id provider="uniprot">63737</id>
5502                                       <code>NOSP7</code>
5503                                       <scientific_name>Nostoc punctiforme (strain ATCC 29133 / PCC 73102)</scientific_name>
5504                                     </taxonomy>
5505                                   </clade>
5506                                 </clade>
5507                                 <clade>
5508                                   <taxonomy>
5509                                     <id provider="uniprot">155978</id>
5510                                     <code>ACAMR</code>
5511                                     <scientific_name>Acaryochloris marina</scientific_name>
5512                                     <rank>species</rank>
5513                                   </taxonomy>
5514                                 </clade>
5515                               </clade>
5516                               <clade>
5517                                 <taxonomy>
5518                                   <id provider="uniprot">449447</id>
5519                                   <code>MICAN</code>
5520                                   <scientific_name>Microcystis aeruginosa (strain NIES-843)</scientific_name>
5521                                 </taxonomy>
5522                               </clade>
5523                             </clade>
5524                             <clade>
5525                               <taxonomy>
5526                                 <id provider="uniprot">1206</id>
5527                                 <code>TRIER</code>
5528                                 <scientific_name>Trichodesmium erythraeum</scientific_name>
5529                                 <rank>species</rank>
5530                               </taxonomy>
5531                             </clade>
5532                           </clade>
5533                           <clade>
5534                             <name>b_149</name>
5535                             <taxonomy>
5536                               <id provider="uniprot">1118</id>
5537                               <scientific_name>Chroococcales</scientific_name>
5538                               <rank>order</rank>
5539                             </taxonomy>
5540                             <clade>
5541                               <taxonomy>
5542                                 <id provider="uniprot">32046</id>
5543                                 <code>SYNEL</code>
5544                                 <scientific_name>Synechococcus elongatus</scientific_name>
5545                                 <rank>species</rank>
5546                               </taxonomy>
5547                             </clade>
5548                             <clade>
5549                               <taxonomy>
5550                                 <id provider="uniprot">1148</id>
5551                                 <code>SYNY3</code>
5552                                 <scientific_name>Synechocystis sp. (strain PCC 6803)</scientific_name>
5553                                 <rank>species</rank>
5554                               </taxonomy>
5555                             </clade>
5556                           </clade>
5557                         </clade>
5558                         <clade>
5559                           <taxonomy>
5560                             <id provider="uniprot">33072</id>
5561                             <code>GLOVI</code>
5562                             <scientific_name>Gloeobacter violaceus</scientific_name>
5563                             <rank>species</rank>
5564                           </taxonomy>
5565                         </clade>
5566                       </clade>
5567                       <clade>
5568                         <name>b_161</name>
5569                         <clade>
5570                           <name>b_159</name>
5571                           <taxonomy>
5572                             <id provider="uniprot">1218</id>
5573                             <scientific_name>Prochlorococcus</scientific_name>
5574                             <rank>genus</rank>
5575                           </taxonomy>
5576                           <clade>
5577                             <name>b_157</name>
5578                             <clade>
5579                               <taxonomy>
5580                                 <id provider="uniprot">1219</id>
5581                                 <code>PROMA</code>
5582                                 <scientific_name>Prochlorococcus marinus</scientific_name>
5583                                 <rank>species</rank>
5584                               </taxonomy>
5585                             </clade>
5586                             <clade>
5587                               <taxonomy>
5588                                 <id provider="uniprot">59919</id>
5589                                 <code>PROMP</code>
5590                                 <scientific_name>Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4)</scientific_name>
5591                               </taxonomy>
5592                             </clade>
5593                           </clade>
5594                           <clade>
5595                             <taxonomy>
5596                               <id provider="uniprot">74547</id>
5597                               <code>PROMM</code>
5598                               <scientific_name>Prochlorococcus marinus (strain MIT 9313)</scientific_name>
5599                             </taxonomy>
5600                           </clade>
5601                         </clade>
5602                         <clade>
5603                           <taxonomy>
5604                             <id provider="uniprot">64471</id>
5605                             <code>SYNS3</code>
5606                             <scientific_name>Synechococcus sp. (strain CC9311)</scientific_name>
5607                             <rank>species</rank>
5608                           </taxonomy>
5609                         </clade>
5610                       </clade>
5611                     </clade>
5612                   </clade>
5613                   <clade>
5614                     <name>b_192</name>
5615                     <clade>
5616                       <name>b_190</name>
5617                       <clade>
5618                         <name>b_178</name>
5619                         <clade>
5620                           <name>b_176</name>
5621                           <taxonomy>
5622                             <id provider="uniprot">191412</id>
5623                             <scientific_name>Chlorobiaceae</scientific_name>
5624                             <rank>family</rank>
5625                           </taxonomy>
5626                           <clade>
5627                             <name>b_170</name>
5628                             <clade>
5629                               <name>b_166</name>
5630                               <clade>
5631                                 <taxonomy>
5632                                   <id provider="uniprot">331678</id>
5633                                   <code>CHLPB</code>
5634                                   <scientific_name>Chlorobium phaeobacteroides (strain BS1)</scientific_name>
5635                                 </taxonomy>
5636                               </clade>
5637                               <clade>
5638                                 <taxonomy>
5639                                   <id provider="uniprot">1102</id>
5640                                   <code>PROAE</code>
5641                                   <scientific_name>Prosthecochloris aestuarii</scientific_name>
5642                                   <rank>species</rank>
5643                                 </taxonomy>
5644                               </clade>
5645                             </clade>
5646                             <clade>
5647                               <name>b_169</name>
5648                               <taxonomy>
5649                                 <id provider="uniprot">274493</id>
5650                                 <scientific_name>Chlorobium/Pelodictyon group</scientific_name>
5651                               </taxonomy>
5652                               <clade>
5653                                 <taxonomy>
5654                                   <id provider="uniprot">1100</id>
5655                                   <code>PELLU</code>
5656                                   <scientific_name>Pelodictyon luteolum</scientific_name>
5657                                   <rank>species</rank>
5658                                 </taxonomy>
5659                               </clade>
5660                               <clade>
5661                                 <taxonomy>
5662                                   <id provider="uniprot">290318</id>
5663                                   <code>PROVI</code>
5664                                   <scientific_name>Prosthecochloris vibrioformis (strain DSM 265)</scientific_name>
5665                                   <common_name>Chlorobium vibrioforme subsp. thiosulfatophilum (strain DSM 265)</common_name>
5666                                   <synonym>Chlorobium phaeovibrioides (strain DSM 265)</synonym>
5667                                 </taxonomy>
5668                               </clade>
5669                             </clade>
5670                           </clade>
5671                           <clade>
5672                             <name>b_175</name>
5673                             <clade>
5674                               <name>b_173</name>
5675                               <taxonomy>
5676                                 <id provider="uniprot">256319</id>
5677                                 <scientific_name>Chlorobaculum</scientific_name>
5678                                 <rank>genus</rank>
5679                               </taxonomy>
5680                               <clade>
5681                                 <taxonomy>
5682                                   <id provider="uniprot">517417</id>
5683                                   <code>CHLP8</code>
5684                                   <scientific_name>Chlorobaculum parvum (strain NCIB 8327)</scientific_name>
5685                                   <synonym>Chlorobium vibrioforme subsp. thiosulfatophilum (strain DSM 263 / NCIB 8327)</synonym>
5686                                 </taxonomy>
5687                               </clade>
5688                               <clade>
5689                                 <taxonomy>
5690                                   <id provider="uniprot">1097</id>
5691                                   <code>CHLTE</code>
5692                                   <scientific_name>Chlorobium tepidum</scientific_name>
5693                                   <rank>species</rank>
5694                                 </taxonomy>
5695                               </clade>
5696                             </clade>
5697                             <clade>
5698                               <taxonomy>
5699                                 <id provider="uniprot">340177</id>
5700                                 <code>CHLCH</code>
5701                                 <scientific_name>Chlorobium chlorochromatii (strain CaD3)</scientific_name>
5702                               </taxonomy>
5703                             </clade>
5704                           </clade>
5705                         </clade>
5706                         <clade>
5707                           <taxonomy>
5708                             <id provider="uniprot">315277</id>
5709                             <code>CHLTA</code>
5710                             <scientific_name>Chlamydia trachomatis serovar A (strain HAR-13 / ATCC VR-571B)</scientific_name>
5711                           </taxonomy>
5712                         </clade>
5713                       </clade>
5714                       <clade>
5715                         <name>b_189</name>
5716                         <taxonomy>
5717                           <id provider="uniprot">976</id>
5718                           <scientific_name>Bacteroidetes</scientific_name>
5719                           <rank>phylum</rank>
5720                         </taxonomy>
5721                         <clade>
5722                           <name>b_183</name>
5723                           <clade>
5724                             <name>b_181</name>
5725                             <taxonomy>
5726                               <id provider="uniprot">49546</id>
5727                               <scientific_name>Flavobacteriaceae</scientific_name>
5728                               <rank>family</rank>
5729                             </taxonomy>
5730                             <clade>
5731                               <taxonomy>
5732                                 <id provider="uniprot">986</id>
5733                                 <code>FLAJO</code>
5734                                 <scientific_name>Flavobacterium johnsoniae</scientific_name>
5735                                 <synonym>Cytophaga johnsonae</synonym>
5736                                 <rank>species</rank>
5737                               </taxonomy>
5738                             </clade>
5739                             <clade>
5740                               <taxonomy>
5741                                 <id provider="uniprot">411154</id>
5742                                 <code>GRAFK</code>
5743                                 <scientific_name>Gramella forsetii (strain KT0803)</scientific_name>
5744                               </taxonomy>
5745                             </clade>
5746                           </clade>
5747                           <clade>
5748                             <taxonomy>
5749                               <id provider="uniprot">269798</id>
5750                               <code>CYTH3</code>
5751                               <scientific_name>Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469)</scientific_name>
5752                             </taxonomy>
5753                           </clade>
5754                         </clade>
5755                         <clade>
5756                           <name>b_188</name>
5757                           <taxonomy>
5758                             <id provider="uniprot">171549</id>
5759                             <scientific_name>Bacteroidales</scientific_name>
5760                             <rank>order</rank>
5761                           </taxonomy>
5762                           <clade>
5763                             <name>b_186</name>
5764                             <taxonomy>
5765                               <id provider="uniprot">816</id>
5766                               <scientific_name>Bacteroides</scientific_name>
5767                               <rank>genus</rank>
5768                             </taxonomy>
5769                             <clade>
5770                               <taxonomy>
5771                                 <id provider="uniprot">817</id>
5772                                 <code>BACFR</code>
5773                                 <scientific_name>Bacteroides fragilis</scientific_name>
5774                                 <rank>species</rank>
5775                               </taxonomy>
5776                             </clade>
5777                             <clade>
5778                               <taxonomy>
5779                                 <id provider="uniprot">818</id>
5780                                 <code>BACTN</code>
5781                                 <scientific_name>Bacteroides thetaiotaomicron</scientific_name>
5782                                 <rank>species</rank>
5783                               </taxonomy>
5784                             </clade>
5785                           </clade>
5786                           <clade>
5787                             <taxonomy>
5788                               <id provider="uniprot">837</id>
5789                               <code>PORGI</code>
5790                               <scientific_name>Porphyromonas gingivalis</scientific_name>
5791                               <synonym>Bacteroides gingivalis</synonym>
5792                               <rank>species</rank>
5793                             </taxonomy>
5794                           </clade>
5795                         </clade>
5796                       </clade>
5797                     </clade>
5798                     <clade>
5799                       <taxonomy>
5800                         <id provider="uniprot">309807</id>
5801                         <code>SALRD</code>
5802                         <scientific_name>Salinibacter ruber (strain DSM 13855 / M31)</scientific_name>
5803                       </taxonomy>
5804                     </clade>
5805                   </clade>
5806                 </clade>
5807               </clade>
5808               <clade>
5809                 <name>b_199</name>
5810                 <clade>
5811                   <name>b_197</name>
5812                   <taxonomy>
5813                     <scientific_name>Verrucomicrobia</scientific_name>
5814                   </taxonomy>
5815                   <clade>
5816                     <taxonomy>
5817                       <id provider="uniprot">349741</id>
5818                       <code>AKKM8</code>
5819                       <scientific_name>Akkermansia muciniphila (strain ATCC BAA-835)</scientific_name>
5820                     </taxonomy>
5821                   </clade>
5822                   <clade>
5823                     <taxonomy>
5824                       <id provider="uniprot">481448</id>
5825                       <code>METI4</code>
5826                       <scientific_name>Methylacidiphilum infernorum (isolate V4)</scientific_name>
5827                       <synonym>Methylokorus infernorum (strain V4)</synonym>
5828                     </taxonomy>
5829                   </clade>
5830                 </clade>
5831                 <clade>
5832                   <taxonomy>
5833                     <id provider="uniprot">44275</id>
5834                     <code>LEPIC</code>
5835                     <scientific_name>Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni</scientific_name>
5836                   </taxonomy>
5837                 </clade>
5838               </clade>
5839             </clade>
5840             <clade>
5841               <name>b_225</name>
5842               <clade>
5843                 <name>b_219</name>
5844                 <taxonomy>
5845                   <id provider="uniprot">1239</id>
5846                   <scientific_name>Firmicutes</scientific_name>
5847                   <rank>phylum</rank>
5848                 </taxonomy>
5849                 <clade>
5850                   <name>b_213</name>
5851                   <clade>
5852                     <taxonomy>
5853                       <id provider="uniprot">1385</id>
5854                       <scientific_name>Bacillales</scientific_name>
5855                       <rank>order</rank>
5856                     </taxonomy>
5857                     <clade>
5858                       <taxonomy>
5859                         <id provider="uniprot">186817</id>
5860                         <scientific_name>Bacillaceae</scientific_name>
5861                         <rank>family</rank>
5862                       </taxonomy>
5863                       <clade>
5864                         <taxonomy>
5865                           <id provider="uniprot">1386</id>
5866                           <scientific_name>Bacillus</scientific_name>
5867                           <rank>genus</rank>
5868                         </taxonomy>
5869                         <clade>
5870                           <taxonomy>
5871                             <id provider="uniprot">86661</id>
5872                             <scientific_name>Bacillus cereus group</scientific_name>
5873                           </taxonomy>
5874                           <clade>
5875                             <taxonomy>
5876                               <id provider="uniprot">1392</id>
5877                               <code>BACAN</code>
5878                               <scientific_name>Bacillus anthracis</scientific_name>
5879                               <rank>species</rank>
5880                             </taxonomy>
5881                           </clade>
5882                           <clade>
5883                             <taxonomy>
5884                               <id provider="uniprot">572264</id>
5885                               <code>BACC3</code>
5886                               <scientific_name>Bacillus cereus (strain 03BB102)</scientific_name>
5887                               <rank>strain</rank>
5888                             </taxonomy>
5889                           </clade>
5890                         </clade>
5891                         <clade>
5892                           <taxonomy>
5893                             <id provider="uniprot">1423</id>
5894                             <code>BACSU</code>
5895                             <scientific_name>Bacillus subtilis</scientific_name>
5896                             <rank>species</rank>
5897                           </taxonomy>
5898                         </clade>
5899                       </clade>
5900                       <clade>
5901                         <name>b_206</name>
5902                         <clade>
5903                           <taxonomy>
5904                             <id provider="uniprot">86665</id>
5905                             <code>BACHD</code>
5906                             <scientific_name>Bacillus halodurans</scientific_name>
5907                             <rank>species</rank>
5908                           </taxonomy>
5909                         </clade>
5910                         <clade>
5911                           <taxonomy>
5912                             <id provider="uniprot">1462</id>
5913                             <code>GEOKA</code>
5914                             <scientific_name>Geobacillus kaustophilus</scientific_name>
5915                             <rank>species</rank>
5916                           </taxonomy>
5917                         </clade>
5918                       </clade>
5919                     </clade>
5920                     <clade>
5921                       <name>b_210</name>
5922                       <clade>
5923                         <taxonomy>
5924                           <id provider="uniprot">1639</id>
5925                           <code>LISMO</code>
5926                           <scientific_name>Listeria monocytogenes</scientific_name>
5927                           <rank>species</rank>
5928                         </taxonomy>
5929                       </clade>
5930                       <clade>
5931                         <taxonomy>
5932                           <id provider="uniprot">1280</id>
5933                           <code>STAAU</code>
5934                           <scientific_name>Staphylococcus aureus</scientific_name>
5935                           <rank>species</rank>
5936                         </taxonomy>
5937                       </clade>
5938                     </clade>
5939                   </clade>
5940                   <clade>
5941                     <taxonomy>
5942                       <id provider="uniprot">195103</id>
5943                       <code>CLOP1</code>
5944                       <scientific_name>Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A)</scientific_name>
5945                     </taxonomy>
5946                   </clade>
5947                 </clade>
5948                 <clade>
5949                   <name>Clostridia</name>
5950                   <taxonomy>
5951                     <id provider="uniprot">186801</id>
5952                     <scientific_name>Clostridia</scientific_name>
5953                     <rank>class</rank>
5954                   </taxonomy>
5955                   <clade>
5956                     <name>b_218</name>
5957                     <clade>
5958                       <name>b_216</name>
5959                       <taxonomy>
5960                         <id provider="uniprot">186814</id>
5961                         <scientific_name>Thermoanaerobacteriaceae</scientific_name>
5962                         <rank>family</rank>
5963                       </taxonomy>
5964                       <clade>
5965                         <taxonomy>
5966                           <id provider="uniprot">246194</id>
5967                           <code>CARHZ</code>
5968                           <scientific_name>Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008)</scientific_name>
5969                         </taxonomy>
5970                       </clade>
5971                       <clade>
5972                         <taxonomy>
5973                           <id provider="uniprot">119072</id>
5974                           <code>THETN</code>
5975                           <scientific_name>Thermoanaerobacter tengcongensis</scientific_name>
5976                           <rank>species</rank>
5977                         </taxonomy>
5978                       </clade>
5979                     </clade>
5980                     <clade>
5981                       <taxonomy>
5982                         <id provider="uniprot">49338</id>
5983                         <code>DESHA</code>
5984                         <scientific_name>Desulfitobacterium hafniense</scientific_name>
5985                         <synonym>Desulfitobacterium frappieri</synonym>
5986                         <rank>species</rank>
5987                       </taxonomy>
5988                     </clade>
5989                   </clade>
5990                   <clade>
5991                     <taxonomy>
5992                       <id provider="uniprot">515619</id>
5993                       <code>EUBR3</code>
5994                       <scientific_name>Eubacterium rectale (strain ATCC 33656 / VPI 0990)</scientific_name>
5995                     </taxonomy>
5996                   </clade>
5997                 </clade>
5998               </clade>
5999               <clade>
6000                 <name>b_224</name>
6001                 <taxonomy>
6002                   <id provider="uniprot">188709</id>
6003                   <scientific_name>Thermotogaceae</scientific_name>
6004                   <rank>family</rank>
6005                 </taxonomy>
6006                 <clade>
6007                   <name>b_222</name>
6008                   <clade>
6009                     <taxonomy>
6010                       <id provider="uniprot">381764</id>
6011                       <code>FERNB</code>
6012                       <scientific_name>Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1)</scientific_name>
6013                     </taxonomy>
6014                   </clade>
6015                   <clade>
6016                     <taxonomy>
6017                       <id provider="uniprot">416591</id>
6018                       <code>THELT</code>
6019                       <scientific_name>Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO)</scientific_name>
6020                     </taxonomy>
6021                   </clade>
6022                 </clade>
6023                 <clade>
6024                   <taxonomy>
6025                     <id provider="uniprot">2336</id>
6026                     <code>THEMA</code>
6027                     <scientific_name>Thermotoga maritima</scientific_name>
6028                     <rank>species</rank>
6029                   </taxonomy>
6030                 </clade>
6031               </clade>
6032             </clade>
6033           </clade>
6034           <clade>
6035             <name>b_267</name>
6036             <clade>
6037               <name>b_263</name>
6038               <clade>
6039                 <name>b_251</name>
6040                 <clade>
6041                   <name>b_249</name>
6042                   <clade>
6043                     <name>b_245</name>
6044                     <clade>
6045                       <name>b_237</name>
6046                       <clade>
6047                         <name>b_233</name>
6048                         <taxonomy>
6049                           <id provider="uniprot">31969</id>
6050                           <scientific_name>Mollicutes</scientific_name>
6051                           <rank>class</rank>
6052                         </taxonomy>
6053                         <clade>
6054                           <name>b_231</name>
6055                           <clade>
6056                             <name>b_229</name>
6057                             <taxonomy>
6058                               <scientific_name>Mycoplasma</scientific_name>
6059                             </taxonomy>
6060                             <clade>
6061                               <taxonomy>
6062                                 <id provider="uniprot">2097</id>
6063                                 <code>MYCGE</code>
6064                                 <scientific_name>Mycoplasma genitalium</scientific_name>
6065                                 <rank>species</rank>
6066                               </taxonomy>
6067                             </clade>
6068                             <clade>
6069                               <taxonomy>
6070                                 <id provider="uniprot">2104</id>
6071                                 <code>MYCPN</code>
6072                                 <scientific_name>Mycoplasma pneumoniae</scientific_name>
6073                                 <rank>species</rank>
6074                               </taxonomy>
6075                             </clade>
6076                           </clade>
6077                           <clade>
6078                             <taxonomy>
6079                               <id provider="uniprot">2151</id>
6080                               <code>MESFL</code>
6081                               <scientific_name>Mesoplasma florum</scientific_name>
6082                               <synonym>Acholeplasma florum</synonym>
6083                               <rank>species</rank>
6084                             </taxonomy>
6085                           </clade>
6086                         </clade>
6087                         <clade>
6088                           <taxonomy>
6089                             <id provider="uniprot">134821</id>
6090                             <code>UREPA</code>
6091                             <scientific_name>Ureaplasma parvum</scientific_name>
6092                             <synonym>Ureaplasma urealyticum biotype 1</synonym>
6093                             <rank>species</rank>
6094                           </taxonomy>
6095                         </clade>
6096                       </clade>
6097                       <clade>
6098                         <name>b_236</name>
6099                         <taxonomy>
6100                           <id provider="uniprot">137</id>
6101                           <scientific_name>Spirochaetaceae</scientific_name>
6102                           <rank>family</rank>
6103                         </taxonomy>
6104                         <clade>
6105                           <taxonomy>
6106                             <id provider="uniprot">139</id>
6107                             <code>BORBU</code>
6108                             <scientific_name>Borrelia burgdorferi</scientific_name>
6109                             <common_name>Lyme disease spirochete</common_name>
6110                             <rank>species</rank>
6111                           </taxonomy>
6112                         </clade>
6113                         <clade>
6114                           <taxonomy>
6115                             <id provider="uniprot">160</id>
6116                             <code>TREPA</code>
6117                             <scientific_name>Treponema pallidum</scientific_name>
6118                             <rank>species</rank>
6119                           </taxonomy>
6120                         </clade>
6121                       </clade>
6122                     </clade>
6123                     <clade>
6124                       <name>b_244</name>
6125                       <clade>
6126                         <name>b_242</name>
6127                         <taxonomy>
6128                           <id provider="uniprot">1113537</id>
6129                           <scientific_name>Chlamydia/Chlamydophila group</scientific_name>
6130                         </taxonomy>
6131                         <clade>
6132                           <name>b_240</name>
6133                           <clade>
6134                             <taxonomy>
6135                               <id provider="uniprot">83558</id>
6136                               <code>CHLPN</code>
6137                               <scientific_name>Chlamydia pneumoniae</scientific_name>
6138                               <synonym>Chlamydophila pneumoniae</synonym>
6139                               <rank>species</rank>
6140                             </taxonomy>
6141                           </clade>
6142                           <clade>
6143                             <taxonomy>
6144                               <id provider="uniprot">264202</id>
6145                               <code>CHLFF</code>
6146                               <scientific_name>Chlamydophila felis (strain Fe/C-56)</scientific_name>
6147                             </taxonomy>
6148                           </clade>
6149                         </clade>
6150                         <clade>
6151                           <taxonomy>
6152                             <id provider="uniprot">83560</id>
6153                             <code>CHLMU</code>
6154                             <scientific_name>Chlamydia muridarum</scientific_name>
6155                             <rank>species</rank>
6156                           </taxonomy>
6157                         </clade>
6158                       </clade>
6159                       <clade>
6160                         <taxonomy>
6161                           <id provider="uniprot">785</id>
6162                           <code>RICTY</code>
6163                           <scientific_name>Rickettsia typhi</scientific_name>
6164                           <rank>species</rank>
6165                         </taxonomy>
6166                       </clade>
6167                     </clade>
6168                   </clade>
6169                   <clade>
6170                     <taxonomy>
6171                       <id provider="uniprot">28211</id>
6172                       <scientific_name>Alphaproteobacteria</scientific_name>
6173                       <rank>class</rank>
6174                     </taxonomy>
6175                     <clade>
6176                       <taxonomy>
6177                         <id provider="uniprot">38323</id>
6178                         <code>BARHE</code>
6179                         <scientific_name>Bartonella henselae</scientific_name>
6180                         <synonym>Rochalimaea henselae</synonym>
6181                         <rank>species</rank>
6182                       </taxonomy>
6183                     </clade>
6184                     <clade>
6185                       <taxonomy>
6186                         <id provider="uniprot">198252</id>
6187                         <code>PELUB</code>
6188                         <scientific_name>Pelagibacter ubique</scientific_name>
6189                         <rank>species</rank>
6190                       </taxonomy>
6191                     </clade>
6192                     <clade>
6193                       <taxonomy>
6194                         <id provider="uniprot">780</id>
6195                         <scientific_name>Rickettsia</scientific_name>
6196                         <rank>genus</rank>
6197                       </taxonomy>
6198                       <clade>
6199                         <taxonomy>
6200                           <id provider="uniprot">452659</id>
6201                           <code>RICRO</code>
6202                           <scientific_name>Rickettsia rickettsii (strain Iowa)</scientific_name>
6203                           <rank>strain</rank>
6204                         </taxonomy>
6205                       </clade>
6206                       <clade>
6207                         <taxonomy>
6208                           <id provider="uniprot">391896</id>
6209                           <code>RICB8</code>
6210                           <scientific_name>Rickettsia bellii (strain OSU 85-389)</scientific_name>
6211                         </taxonomy>
6212                       </clade>
6213                     </clade>
6214                   </clade>
6215                 </clade>
6216                 <clade>
6217                   <taxonomy>
6218                     <id provider="uniprot">263</id>
6219                     <code>FRATU</code>
6220                     <scientific_name>Francisella tularensis</scientific_name>
6221                     <rank>species</rank>
6222                   </taxonomy>
6223                 </clade>
6224               </clade>
6225               <clade>
6226                 <name>b_262</name>
6227                 <clade>
6228                   <name>b_260</name>
6229                   <clade>
6230                     <name>b_258</name>
6231                     <taxonomy>
6232                       <id provider="uniprot">186826</id>
6233                       <scientific_name>Lactobacillales</scientific_name>
6234                       <rank>order</rank>
6235                     </taxonomy>
6236                     <clade>
6237                       <name>b_256</name>
6238                       <taxonomy>
6239                         <id provider="uniprot">1300</id>
6240                         <scientific_name>Streptococcaceae</scientific_name>
6241                         <rank>family</rank>
6242                       </taxonomy>
6243                       <clade>
6244                         <name>b_254</name>
6245                         <taxonomy>
6246                           <id provider="uniprot">1301</id>
6247                           <scientific_name>Streptococcus</scientific_name>
6248                           <rank>genus</rank>
6249                         </taxonomy>
6250                         <clade>
6251                           <taxonomy>
6252                             <id provider="uniprot">1313</id>
6253                             <code>STRPN</code>
6254                             <scientific_name>Streptococcus pneumoniae</scientific_name>
6255                             <rank>species</rank>
6256                           </taxonomy>
6257                         </clade>
6258                         <clade>
6259                           <taxonomy>
6260                             <id provider="uniprot">1314</id>
6261                             <code>STRPY</code>
6262                             <scientific_name>Streptococcus pyogenes</scientific_name>
6263                             <rank>species</rank>
6264                           </taxonomy>
6265                         </clade>
6266                       </clade>
6267                       <clade>
6268                         <taxonomy>
6269                           <id provider="uniprot">1360</id>
6270                           <code>LACLA</code>
6271                           <scientific_name>Lactococcus lactis subsp. lactis</scientific_name>
6272                           <synonym>Streptococcus lactis</synonym>
6273                           <rank>subspecies</rank>
6274                         </taxonomy>
6275                       </clade>
6276                     </clade>
6277                     <clade>
6278                       <taxonomy>
6279                         <id provider="uniprot">1579</id>
6280                         <code>LACAC</code>
6281                         <scientific_name>Lactobacillus acidophilus</scientific_name>
6282                         <rank>species</rank>
6283                       </taxonomy>
6284                     </clade>
6285                   </clade>
6286                   <clade>
6287                     <taxonomy>
6288                       <id provider="uniprot">216816</id>
6289                       <code>BIFLO</code>
6290                       <scientific_name>Bifidobacterium longum</scientific_name>
6291                       <rank>species</rank>
6292                     </taxonomy>
6293                   </clade>
6294                 </clade>
6295                 <clade>
6296                   <taxonomy>
6297                     <id provider="uniprot">851</id>
6298                     <code>FUSNU</code>
6299                     <scientific_name>Fusobacterium nucleatum</scientific_name>
6300                     <rank>species</rank>
6301                   </taxonomy>
6302                 </clade>
6303               </clade>
6304             </clade>
6305             <clade>
6306               <name>b_266</name>
6307               <taxonomy>
6308                 <id provider="uniprot">61434</id>
6309                 <scientific_name>Dehalococcoides</scientific_name>
6310                 <rank>genus</rank>
6311               </taxonomy>
6312               <clade>
6313                 <taxonomy>
6314                   <id provider="uniprot">243164</id>
6315                   <code>DEHE1</code>
6316                   <scientific_name>Dehalococcoides ethenogenes (strain 195)</scientific_name>
6317                 </taxonomy>
6318               </clade>
6319               <clade>
6320                 <taxonomy>
6321                   <id provider="uniprot">216389</id>
6322                   <code>DEHSB</code>
6323                   <scientific_name>Dehalococcoides sp. (strain BAV1)</scientific_name>
6324                   <rank>species</rank>
6325                 </taxonomy>
6326               </clade>
6327             </clade>
6328           </clade>
6329         </clade>
6330         <clade>
6331           <name>b_277</name>
6332           <taxonomy>
6333             <id provider="uniprot">29547</id>
6334             <scientific_name>Epsilonproteobacteria</scientific_name>
6335             <rank>class</rank>
6336           </taxonomy>
6337           <clade>
6338             <name>b_273</name>
6339             <clade>
6340               <taxonomy>
6341                 <id provider="uniprot">387092</id>
6342                 <code>NITSB</code>
6343                 <scientific_name>Nitratiruptor sp. (strain SB155-2)</scientific_name>
6344                 <rank>species</rank>
6345               </taxonomy>
6346             </clade>
6347             <clade>
6348               <taxonomy>
6349                 <id provider="uniprot">387093</id>
6350                 <code>SULNB</code>
6351                 <scientific_name>Sulfurovum sp. (strain NBC37-1)</scientific_name>
6352                 <rank>species</rank>
6353               </taxonomy>
6354             </clade>
6355           </clade>
6356           <clade>
6357             <name>b_276</name>
6358             <taxonomy>
6359               <id provider="uniprot">213849</id>
6360               <scientific_name>Campylobacterales</scientific_name>
6361               <rank>order</rank>
6362             </taxonomy>
6363             <clade>
6364               <taxonomy>
6365                 <id provider="uniprot">197</id>
6366                 <code>CAMJE</code>
6367                 <scientific_name>Campylobacter jejuni</scientific_name>
6368                 <rank>species</rank>
6369               </taxonomy>
6370             </clade>
6371             <clade>
6372               <taxonomy>
6373                 <id provider="uniprot">357544</id>
6374                 <code>HELPH</code>
6375                 <scientific_name>Helicobacter pylori (strain HPAG1)</scientific_name>
6376               </taxonomy>
6377             </clade>
6378           </clade>
6379         </clade>
6380       </clade>
6381       <clade>
6382         <taxonomy>
6383           <id provider="uniprot">63363</id>
6384           <code>AQUAE</code>
6385           <scientific_name>Aquifex aeolicus</scientific_name>
6386           <rank>species</rank>
6387         </taxonomy>
6388       </clade>
6389     </clade>
6390   </clade>
6391 </phylogeny>
6392 </phyloxml>