forester/data/tol_145.xml

   1 <?xml version="1.0" encoding="UTF-8"?>
   2 <phyloxml xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.phyloxml.org http://www.phyloxml.org/1.10/phyloxml.xsd" xmlns="http://www.phyloxml.org">
   3 <phylogeny rooted="true" rerootable="false">
   4   <clade>
   5     <name>cellular_organisms</name>
   6     <clade>
   7       <taxonomy>
   8         <scientific_name>Neomura</scientific_name>
   9       </taxonomy>
  10       <clade>
  11         <taxonomy>
  12           <id provider="uniprot">2759</id>
  13           <scientific_name>Eukaryota</scientific_name>
  14           <rank>superkingdom</rank>
  15         </taxonomy>
  16         <clade>
  17           <name>Unikonta</name>
  18           <clade>
  19             <name>Opisthokonta &amp; Apusozoa</name>
  20             <clade>
  21               <taxonomy>
  22                 <id provider="uniprot">33154</id>
  23                 <scientific_name>Opisthokonta</scientific_name>
  24                 <common_name>Fungi/Metazoa group</common_name>
  25               </taxonomy>
  26               <clade>
  27                 <taxonomy>
  28                   <scientific_name>Holozoa</scientific_name>
  29                 </taxonomy>
  30                 <clade>
  31                   <name>Choanoflagellatea &amp; Metazoa</name>
  32                   <clade>
  33                     <name>Metazoa</name>
  34                     <taxonomy>
  35                       <id provider="uniprot">33208</id>
  36                       <scientific_name>Metazoa</scientific_name>
  37                       <rank>kingdom</rank>
  38                     </taxonomy>
  39                     <clade>
  40                       <name>Eumetazoa</name>
  41                       <reference doi="10.1038/nature06614">
  42                       </reference>
  43                       <clade>
  44                         <name>Bilateria_Cnidaria</name>
  45                         <clade>
  46                           <name>Bilateria</name>
  47                           <clade>
  48                             <name>Deuterostomia</name>
  49                             <reference doi="10.1038/nature04336">
  50                             </reference>
  51                             <clade>
  52                               <name>Chordata</name>
  53                               <taxonomy>
  54                                 <id provider="uniprot">7711</id>
  55                                 <scientific_name>Chordata</scientific_name>
  56                                 <rank>phylum</rank>
  57                               </taxonomy>
  58                               <clade>
  59                                 <name>Urochordata &amp; Vertebrata</name>
  60                                 <clade>
  61                                   <taxonomy>
  62                                     <id provider="uniprot">7742</id>
  63                                     <scientific_name>Vertebrata</scientific_name>
  64                                   </taxonomy>
  65                                   <clade>
  66                                     <taxonomy>
  67                                       <id provider="uniprot">7776</id>
  68                                       <scientific_name>Gnathostomata</scientific_name>
  69                                       <common_name>jawed vertebrates</common_name>
  70                                       <rank>superclass</rank>
  71                                     </taxonomy>
  72                                     <clade>
  73                                       <taxonomy>
  74                                         <id provider="uniprot">117571</id>
  75                                         <scientific_name>Euteleostomi</scientific_name>
  76                                       </taxonomy>
  77                                       <clade>
  78                                         <name>Tetrapoda</name>
  79                                         <clade>
  80                                           <name>Amniota</name>
  81                                           <clade>
  82                                             <taxonomy>
  83                                               <id provider="uniprot">40674</id>
  84                                               <scientific_name>Mammalia</scientific_name>
  85                                               <rank>class</rank>
  86                                             </taxonomy>
  87                                             <clade>
  88                                               <name>Theria</name>
  89                                               <clade>
  90                                                 <taxonomy>
  91                                                   <id provider="uniprot">9347</id>
  92                                                   <scientific_name>Eutheria</scientific_name>
  93                                                   <common_name>Placental mammals</common_name>
  94                                                 </taxonomy>
  95                                                 <reference doi="10.1002/bies.200900053">
  96                                                   <desc>The new framework for understanding placental mammal evolution</desc>
  97                                                 </reference>
  98                                                 <clade>
  99                                                   <taxonomy>
 100                                                     <scientific_name>Boreoeutheria</scientific_name>
 101                                                     <synonym>Boreotheria</synonym>
 102                                                   </taxonomy>
 103                                                   <clade>
 104                                                     <taxonomy>
 105                                                       <id provider="uniprot">314146</id>
 106                                                       <scientific_name>Euarchontoglires</scientific_name>
 107                                                       <rank>superorder</rank>
 108                                                     </taxonomy>
 109                                                     <clade>
 110                                                       <taxonomy>
 111                                                         <scientific_name>Euarchonta</scientific_name>
 112                                                       </taxonomy>
 113                                                       <clade>
 114                                                         <taxonomy>
 115                                                           <id provider="uniprot">9443</id>
 116                                                           <scientific_name>Primates</scientific_name>
 117                                                           <rank>order</rank>
 118                                                         </taxonomy>
 119                                                         <clade>
 120                                                           <taxonomy>
 121                                                             <id provider="uniprot">376913</id>
 122                                                             <scientific_name>Haplorrhini</scientific_name>
 123                                                             <rank>suborder</rank>
 124                                                           </taxonomy>
 125                                                           <clade>
 126                                                             <taxonomy>
 127                                                               <id provider="uniprot">314293</id>
 128                                                               <scientific_name>Simiiformes</scientific_name>
 129                                                               <rank>infraorder</rank>
 130                                                             </taxonomy>
 131                                                             <clade>
 132                                                               <taxonomy>
 133                                                                 <id provider="uniprot">9526</id>
 134                                                                 <scientific_name>Catarrhini</scientific_name>
 135                                                               </taxonomy>
 136                                                               <clade>
 137                                                                 <taxonomy>
 138                                                                   <id provider="uniprot">314295</id>
 139                                                                   <scientific_name>Hominoidea</scientific_name>
 140                                                                   <common_name>Apes</common_name>
 141                                                                   <rank>superfamily</rank>
 142                                                                 </taxonomy>
 143                                                                 <clade>
 144                                                                   <taxonomy>
 145                                                                     <id provider="uniprot">9604</id>
 146                                                                     <scientific_name>Hominidae</scientific_name>
 147                                                                     <common_name>Great apes</common_name>
 148                                                                     <rank>family</rank>
 149                                                                   </taxonomy>
 150                                                                   <clade>
 151                                                                     <taxonomy>
 152                                                                       <id provider="uniprot">207598</id>
 153                                                                       <scientific_name>Homininae</scientific_name>
 154                                                                       <rank>subfamily</rank>
 155                                                                     </taxonomy>
 156                                                                     <clade>
 157                                                                       <taxonomy>
 158                                                                         <scientific_name>Hominini</scientific_name>
 159                                                                         <rank>tribe</rank>
 160                                                                       </taxonomy>
 161                                                                       <clade>
 162                                                                         <taxonomy>
 163                                                                           <id provider="uniprot">9606</id>
 164                                                                           <code>HUMAN</code>
 165                                                                           <scientific_name>Homo sapiens</scientific_name>
 166                                                                           <common_name>Human</common_name>
 167                                                                           <rank>species</rank>
 168                                                                           <uri>http://www.thehindu.com/multimedia/dynamic/00029/IN05_DARWIN_29896f.jpg</uri>
 169                                                                         </taxonomy>
 170                                                                       </clade>
 171                                                                       <clade>
 172                                                                         <taxonomy>
 173                                                                           <id provider="uniprot">9598</id>
 174                                                                           <code>PANTR</code>
 175                                                                           <scientific_name>Pan troglodytes</scientific_name>
 176                                                                           <common_name>Chimpanzee</common_name>
 177                                                                           <rank>species</rank>
 178                                                                           <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/8/8b/Schimpanse_zoo-leipig.jpg/800px-Schimpanse_zoo-leipig.jpg</uri>
 179                                                                         </taxonomy>
 180                                                                       </clade>
 181                                                                     </clade>
 182                                                                     <clade>
 183                                                                       <taxonomy>
 184                                                                         <id provider="uniprot">9595</id>
 185                                                                         <code>GORGO</code>
 186                                                                         <scientific_name>Gorilla gorilla gorilla</scientific_name>
 187                                                                         <common_name>Western lowland gorilla</common_name>
 188                                                                         <rank>subspecies</rank>
 189                                                                         <uri>http://upload.wikimedia.org/wikipedia/commons/c/c7/Stavenn_Gorilla_gorilla_00.jpg</uri>
 190                                                                       </taxonomy>
 191                                                                     </clade>
 192                                                                   </clade>
 193                                                                   <clade>
 194                                                                     <taxonomy>
 195                                                                       <id provider="uniprot">9601</id>
 196                                                                       <code>PONAB</code>
 197                                                                       <scientific_name>Pongo abelii</scientific_name>
 198                                                                       <common_name>Sumatran orangutan</common_name>
 199                                                                       <synonym>Pongo pygmaeus abelii</synonym>
 200                                                                       <rank>species</rank>
 201                                                                       <uri>http://www.kidszoo.org/images/animals/orangutan.jpg</uri>
 202                                                                     </taxonomy>
 203                                                                   </clade>
 204                                                                 </clade>
 205                                                                 <clade>
 206                                                                   <taxonomy>
 207                                                                     <id provider="uniprot">61853</id>
 208                                                                     <code>NOMLE</code>
 209                                                                     <scientific_name>Nomascus leucogenys</scientific_name>
 210                                                                     <common_name>Northern white-cheeked gibbon</common_name>
 211                                                                     <synonym>Hylobates leucogenys</synonym>
 212                                                                     <synonym>Hylobates concolor leucogenys</synonym>
 213                                                                     <rank>species</rank>
 214                                                                     <uri>http://uswest.ensembl.org/img/species/pic_Nomascus_leucogenys.png</uri>
 215                                                                     <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/1/1b/Hylobates_concolor2.jpg/450px-Hylobates_concolor2.jpg</uri>
 216                                                                   </taxonomy>
 217                                                                 </clade>
 218                                                               </clade>
 219                                                               <clade>
 220                                                                 <taxonomy>
 221                                                                   <id provider="uniprot">9528</id>
 222                                                                   <scientific_name>Cercopithecinae</scientific_name>
 223                                                                   <rank>subfamily</rank>
 224                                                                 </taxonomy>
 225                                                                 <clade>
 226                                                                   <taxonomy>
 227                                                                     <id provider="uniprot">9544</id>
 228                                                                     <code>MACMU</code>
 229                                                                     <scientific_name>Macaca mulatta</scientific_name>
 230                                                                     <common_name>Rhesus macaque</common_name>
 231                                                                     <rank>species</rank>
 232                                                                     <uri>http://www.biolib.cz/IMG/GAL/39329.jpg</uri>
 233                                                                   </taxonomy>
 234                                                                 </clade>
 235                                                                 <clade>
 236                                                                   <taxonomy>
 237                                                                     <id provider="uniprot">9557</id>
 238                                                                     <code>PAPHA</code>
 239                                                                     <scientific_name>Papio hamadryas</scientific_name>
 240                                                                     <common_name>Hamadryas baboon</common_name>
 241                                                                     <rank>species</rank>
 242                                                                     <uri>http://pin.primate.wisc.edu/fs/sheets/images/227lg.jpg</uri>
 243                                                                   </taxonomy>
 244                                                                 </clade>
 245                                                               </clade>
 246                                                             </clade>
 247                                                             <clade>
 248                                                               <taxonomy>
 249                                                                 <id provider="uniprot">9483</id>
 250                                                                 <code>CALJA</code>
 251                                                                 <scientific_name>Callithrix jacchus</scientific_name>
 252                                                                 <common_name>White-tufted-ear marmoset</common_name>
 253                                                                 <synonym>Callithrix jacchus jacchus</synonym>
 254                                                                 <rank>species</rank>
 255                                                                 <uri>http://www.arthurgrosset.com/mammals/photos/caljac28086.jpg</uri>
 256                                                               </taxonomy>
 257                                                             </clade>
 258                                                           </clade>
 259                                                           <clade>
 260                                                             <taxonomy>
 261                                                               <id provider="uniprot">9478</id>
 262                                                               <code>TARSY</code>
 263                                                               <scientific_name>Tarsius syrichta</scientific_name>
 264                                                               <common_name>Philippine tarsier</common_name>
 265                                                               <rank>species</rank>
 266                                                               <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0408/1425.jpeg</uri>
 267                                                             </taxonomy>
 268                                                           </clade>
 269                                                         </clade>
 270                                                         <clade>
 271                                                           <taxonomy>
 272                                                             <id provider="uniprot">376911</id>
 273                                                             <scientific_name>Strepsirrhini</scientific_name>
 274                                                             <rank>suborder</rank>
 275                                                           </taxonomy>
 276                                                           <clade>
 277                                                             <taxonomy>
 278                                                               <id provider="uniprot">30608</id>
 279                                                               <code>MICMU</code>
 280                                                               <scientific_name>Microcebus murinus</scientific_name>
 281                                                               <common_name>Lesser mouse lemur</common_name>
 282                                                               <rank>species</rank>
 283                                                               <uri>http://daniel.montagnon.pagesperso-orange.fr/images/MicrocbusMurinus.jpg</uri>
 284                                                             </taxonomy>
 285                                                           </clade>
 286                                                           <clade>
 287                                                             <taxonomy>
 288                                                               <id provider="uniprot">30611</id>
 289                                                               <code>OTOGA</code>
 290                                                               <scientific_name>Otolemur garnettii</scientific_name>
 291                                                               <common_name>Garnett&apos;s greater bushbaby</common_name>
 292                                                               <synonym>Galago garnetti</synonym>
 293                                                               <synonym>Small-eared galago</synonym>
 294                                                               <synonym>Garnett&apos;s greater bushbaby</synonym>
 295                                                               <rank>species</rank>
 296                                                               <uri>http://www.mbweni.com/images/Mbweni%20Images/naturetrail/small-earedgalago.jpg</uri>
 297                                                             </taxonomy>
 298                                                           </clade>
 299                                                         </clade>
 300                                                       </clade>
 301                                                       <clade>
 302                                                         <taxonomy>
 303                                                           <id provider="uniprot">37347</id>
 304                                                           <code>TUPBE</code>
 305                                                           <scientific_name>Tupaia belangeri</scientific_name>
 306                                                           <common_name>Common tree shrew</common_name>
 307                                                           <synonym>Tupaia glis belangeri</synonym>
 308                                                           <rank>species</rank>
 309                                                           <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/4/44/Tupaia_belangeri.JPG/800px-Tupaia_belangeri.JPG</uri>
 310                                                         </taxonomy>
 311                                                       </clade>
 312                                                     </clade>
 313                                                     <clade>
 314                                                       <taxonomy>
 315                                                         <id provider="uniprot">314147</id>
 316                                                         <scientific_name>Glires</scientific_name>
 317                                                         <common_name>Rodents and rabbits</common_name>
 318                                                       </taxonomy>
 319                                                       <clade>
 320                                                         <taxonomy>
 321                                                           <id provider="uniprot">9989</id>
 322                                                           <scientific_name>Rodentia</scientific_name>
 323                                                           <rank>order</rank>
 324                                                         </taxonomy>
 325                                                         <clade>
 326                                                           <name>Ctenohystrica &amp; Mouse-related clade</name>
 327                                                           <reference doi="10.1186/1471-2148-9-71">
 328                                                             <desc>Rodent phylogeny revised: analysis of six nuclear genes from all major rodent clades.</desc>
 329                                                           </reference>
 330                                                           <clade>
 331                                                             <taxonomy>
 332                                                               <common_name>Mouse-related clade</common_name>
 333                                                             </taxonomy>
 334                                                             <clade>
 335                                                               <taxonomy>
 336                                                                 <id provider="uniprot">337687</id>
 337                                                                 <scientific_name>Muroidea</scientific_name>
 338                                                               </taxonomy>
 339                                                               <clade>
 340                                                                 <taxonomy>
 341                                                                   <id provider="uniprot">39107</id>
 342                                                                   <scientific_name>Murinae</scientific_name>
 343                                                                   <rank>subfamily</rank>
 344                                                                 </taxonomy>
 345                                                                 <clade>
 346                                                                   <taxonomy>
 347                                                                     <id provider="uniprot">10090</id>
 348                                                                     <code>MOUSE</code>
 349                                                                     <scientific_name>Mus musculus</scientific_name>
 350                                                                     <common_name>Mouse</common_name>
 351                                                                     <rank>species</rank>
 352                                                                     <uri>http://www.zoologi.no/patlas/images/husmus-RS.jpg</uri>
 353                                                                   </taxonomy>
 354                                                                 </clade>
 355                                                                 <clade>
 356                                                                   <taxonomy>
 357                                                                     <id provider="uniprot">10116</id>
 358                                                                     <code>RAT</code>
 359                                                                     <scientific_name>Rattus norvegicus</scientific_name>
 360                                                                     <common_name>Rat</common_name>
 361                                                                     <rank>species</rank>
 362                                                                     <uri>http://upload.wikimedia.org/wikipedia/commons/0/01/Rattus_norvegicus_1.jpg</uri>
 363                                                                   </taxonomy>
 364                                                                 </clade>
 365                                                               </clade>
 366                                                               <clade>
 367                                                                 <taxonomy>
 368                                                                   <id provider="uniprot">10036</id>
 369                                                                   <code>MESAU</code>
 370                                                                   <scientific_name>Mesocricetus auratus</scientific_name>
 371                                                                   <common_name>Golden hamster</common_name>
 372                                                                   <rank>species</rank>
 373                                                                   <uri>http://www.zipcodezoo.com/hp350/Mesocricetus_auratus_0.jpg</uri>
 374                                                                 </taxonomy>
 375                                                               </clade>
 376                                                             </clade>
 377                                                             <clade>
 378                                                               <taxonomy>
 379                                                                 <id provider="uniprot">10020</id>
 380                                                                 <code>DIPOR</code>
 381                                                                 <scientific_name>Dipodomys ordii</scientific_name>
 382                                                                 <common_name>Ord&apos;s kangaroo rat</common_name>
 383                                                                 <rank>species</rank>
 384                                                                 <uri>http://www.nsrl.ttu.edu/tmot1/images/dipoordi.jpg</uri>
 385                                                               </taxonomy>
 386                                                             </clade>
 387                                                           </clade>
 388                                                           <clade>
 389                                                             <taxonomy>
 390                                                               <id provider="uniprot">10141</id>
 391                                                               <code>CAVPO</code>
 392                                                               <scientific_name>Cavia porcellus</scientific_name>
 393                                                               <common_name>Guinea pig</common_name>
 394                                                               <rank>species</rank>
 395                                                               <uri>http://upload.wikimedia.org/wikipedia/commons/7/77/Guinea_1.jpg</uri>
 396                                                             </taxonomy>
 397                                                           </clade>
 398                                                         </clade>
 399                                                         <clade>
 400                                                           <taxonomy>
 401                                                             <id provider="uniprot">43179</id>
 402                                                             <code>SPETR</code>
 403                                                             <scientific_name>Spermophilus tridecemlineatus</scientific_name>
 404                                                             <common_name>Thirteen-lined ground squirrel</common_name>
 405                                                             <synonym>Ictidomys tridecemlineatus</synonym>
 406                                                             <rank>species</rank>
 407                                                             <uri>http://animaldiversity.ummz.umich.edu/site/resources/phil_myers/ADW_mammals/Rodentia/Spermophilus4345.jpg/medium.jpg</uri>
 408                                                           </taxonomy>
 409                                                         </clade>
 410                                                       </clade>
 411                                                       <clade>
 412                                                         <taxonomy>
 413                                                           <id provider="uniprot">9975</id>
 414                                                           <scientific_name>Lagomorpha</scientific_name>
 415                                                           <common_name>Rabbits, hares, pikas</common_name>
 416                                                           <rank>order</rank>
 417                                                         </taxonomy>
 418                                                         <clade>
 419                                                           <taxonomy>
 420                                                             <id provider="uniprot">9978</id>
 421                                                             <code>OCHPR</code>
 422                                                             <scientific_name>Ochotona princeps</scientific_name>
 423                                                             <common_name>Southern American pika</common_name>
 424                                                             <rank>species</rank>
 425                                                             <uri>http://upload.wikimedia.org/wikipedia/commons/3/3b/Ochotona_princeps.jpg</uri>
 426                                                           </taxonomy>
 427                                                         </clade>
 428                                                         <clade>
 429                                                           <taxonomy>
 430                                                             <id provider="uniprot">9986</id>
 431                                                             <code>RABIT</code>
 432                                                             <scientific_name>Oryctolagus cuniculus</scientific_name>
 433                                                             <common_name>Rabbit</common_name>
 434                                                             <rank>species</rank>
 435                                                             <uri>http://www.animalpictures.tk/wp-content/uploads/pictures/pictures-of-rabbit-pictures-818.jpg</uri>
 436                                                             <uri>http://greennature.com/gallery/farm-animal-pictures/albino_rabbit.jpg</uri>
 437                                                           </taxonomy>
 438                                                         </clade>
 439                                                       </clade>
 440                                                     </clade>
 441                                                   </clade>
 442                                                   <clade>
 443                                                     <taxonomy>
 444                                                       <id provider="uniprot">314145</id>
 445                                                       <scientific_name>Laurasiatheria</scientific_name>
 446                                                       <rank>superorder</rank>
 447                                                     </taxonomy>
 448                                                     <clade>
 449                                                       <taxonomy>
 450                                                         <scientific_name>Scrotifera</scientific_name>
 451                                                       </taxonomy>
 452                                                       <clade>
 453                                                         <name>Perissodactyla &amp; Cetartiodactyla &amp; Chiroptera</name>
 454                                                         <clade>
 455                                                           <name>Perissodactyla &amp; Cetartiodactyla</name>
 456                                                           <clade>
 457                                                             <taxonomy>
 458                                                               <id provider="uniprot">91561</id>
 459                                                               <scientific_name>Cetartiodactyla</scientific_name>
 460                                                               <common_name>Even-toed ungulates</common_name>
 461                                                             </taxonomy>
 462                                                             <clade>
 463                                                               <name>Cetruminantia &amp; Suina</name>
 464                                                               <clade>
 465                                                                 <taxonomy>
 466                                                                   <scientific_name>Cetruminantia</scientific_name>
 467                                                                 </taxonomy>
 468                                                                 <clade>
 469                                                                   <taxonomy>
 470                                                                     <id provider="uniprot">9895</id>
 471                                                                     <scientific_name>Bovidae</scientific_name>
 472                                                                     <rank>family</rank>
 473                                                                   </taxonomy>
 474                                                                   <clade>
 475                                                                     <taxonomy>
 476                                                                       <id provider="uniprot">9913</id>
 477                                                                       <code>BOVIN</code>
 478                                                                       <scientific_name>Bos taurus</scientific_name>
 479                                                                       <common_name>Bovine</common_name>
 480                                                                       <synonym>Bos bovis</synonym>
 481                                                                       <rank>species</rank>
 482                                                                       <uri>http://www.biolib.cz/IMG/GAL/18578.jpg</uri>
 483                                                                     </taxonomy>
 484                                                                   </clade>
 485                                                                   <clade>
 486                                                                     <taxonomy>
 487                                                                       <id provider="uniprot">9940</id>
 488                                                                       <code>SHEEP</code>
 489                                                                       <scientific_name>Ovis aries</scientific_name>
 490                                                                       <common_name>Sheep</common_name>
 491                                                                       <rank>species</rank>
 492                                                                       <uri>http://animaldiversity.ummz.umich.edu/site/resources/james_dowlinghealey/blacksheep.jpg/medium.jpg</uri>
 493                                                                     </taxonomy>
 494                                                                   </clade>
 495                                                                 </clade>
 496                                                                 <clade>
 497                                                                   <taxonomy>
 498                                                                     <id provider="uniprot">9721</id>
 499                                                                     <scientific_name>Cetacea</scientific_name>
 500                                                                     <common_name>Whales</common_name>
 501                                                                     <rank>order</rank>
 502                                                                   </taxonomy>
 503                                                                   <clade>
 504                                                                     <taxonomy>
 505                                                                       <id provider="uniprot">9771</id>
 506                                                                       <code>BALMU</code>
 507                                                                       <scientific_name>Balaenoptera musculus</scientific_name>
 508                                                                       <common_name>Blue whale</common_name>
 509                                                                       <rank>species</rank>
 510                                                                       <uri>http://2.bp.blogspot.com/_W90V87w3sr8/TT63uRT_U9I/AAAAAAAAAo8/to9O8zEeo7k/s1600/bluewhale.jpg</uri>
 511                                                                     </taxonomy>
 512                                                                   </clade>
 513                                                                   <clade>
 514                                                                     <taxonomy>
 515                                                                       <id provider="uniprot">9739</id>
 516                                                                       <code>TURTR</code>
 517                                                                       <scientific_name>Tursiops truncatus</scientific_name>
 518                                                                       <common_name>Atlantic bottle-nosed dolphin</common_name>
 519                                                                       <synonym>Delphinus truncatus</synonym>
 520                                                                       <rank>species</rank>
 521                                                                       <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/a/a6/Bottlenose_Dolphin_KSC04pd0178.jpg/800px-Bottlenose_Dolphin_KSC04pd0178.jpg</uri>
 522                                                                     </taxonomy>
 523                                                                   </clade>
 524                                                                 </clade>
 525                                                               </clade>
 526                                                               <clade>
 527                                                                 <taxonomy>
 528                                                                   <id provider="uniprot">9823</id>
 529                                                                   <code>PIG</code>
 530                                                                   <scientific_name>Sus scrofa</scientific_name>
 531                                                                   <common_name>Pig</common_name>
 532                                                                   <rank>species</rank>
 533                                                                   <uri>http://www.batraciens-reptiles.com/sus%20scrofa2.jpg</uri>
 534                                                                 </taxonomy>
 535                                                               </clade>
 536                                                             </clade>
 537                                                             <clade>
 538                                                               <taxonomy>
 539                                                                 <id provider="uniprot">30538</id>
 540                                                                 <code>LAMPA</code>
 541                                                                 <scientific_name>Lama guanicoe pacos</scientific_name>
 542                                                                 <common_name>Alpaca</common_name>
 543                                                                 <synonym>Lama pacos</synonym>
 544                                                                 <rank>species</rank>
 545                                                                 <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/8/8f/A_group_of_Alpacas_on_a_property_including_cria.jpg/800px-A_group_of_Alpacas_on_a_property_including_cria.jpg</uri>
 546                                                               </taxonomy>
 547                                                             </clade>
 548                                                           </clade>
 549                                                           <clade>
 550                                                             <taxonomy>
 551                                                               <id provider="uniprot">9796</id>
 552                                                               <code>HORSE</code>
 553                                                               <scientific_name>Equus caballus</scientific_name>
 554                                                               <common_name>Horse</common_name>
 555                                                               <rank>species</rank>
 556                                                               <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0801/0088.jpeg</uri>
 557                                                             </taxonomy>
 558                                                           </clade>
 559                                                         </clade>
 560                                                         <clade>
 561                                                           <taxonomy>
 562                                                             <id provider="uniprot">9397</id>
 563                                                             <scientific_name>Chiroptera</scientific_name>
 564                                                             <common_name>Bats</common_name>
 565                                                             <rank>order</rank>
 566                                                           </taxonomy>
 567                                                           <clade>
 568                                                             <taxonomy>
 569                                                               <id provider="uniprot">59463</id>
 570                                                               <code>MYOLU</code>
 571                                                               <scientific_name>Myotis lucifugus</scientific_name>
 572                                                               <common_name>Little brown bat</common_name>
 573                                                               <rank>species</rank>
 574                                                               <uri>http://biology.lakeheadu.ca/uploads/Nature_photography/brown_bat.jpg</uri>
 575                                                             </taxonomy>
 576                                                           </clade>
 577                                                           <clade>
 578                                                             <taxonomy>
 579                                                               <id provider="uniprot">132908</id>
 580                                                               <code>PTEVA</code>
 581                                                               <scientific_name>Pteropus vampyrus</scientific_name>
 582                                                               <common_name>Large flying fox</common_name>
 583                                                               <rank>species</rank>
 584                                                               <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/5/5e/Pteropus_vampyrus1.jpg/412px-Pteropus_vampyrus1.jpg</uri>
 585                                                             </taxonomy>
 586                                                           </clade>
 587                                                         </clade>
 588                                                       </clade>
 589                                                       <clade>
 590                                                         <name>Carnivora</name>
 591                                                         <taxonomy>
 592                                                           <id provider="uniprot">33554</id>
 593                                                           <scientific_name>Carnivora</scientific_name>
 594                                                           <rank>order</rank>
 595                                                         </taxonomy>
 596                                                         <clade>
 597                                                           <taxonomy>
 598                                                             <id provider="uniprot">379584</id>
 599                                                             <scientific_name>Caniformia</scientific_name>
 600                                                             <rank>suborder</rank>
 601                                                           </taxonomy>
 602                                                           <clade>
 603                                                             <taxonomy>
 604                                                               <id provider="uniprot">9646</id>
 605                                                               <code>AILME</code>
 606                                                               <scientific_name>Ailuropoda melanoleuca</scientific_name>
 607                                                               <common_name>Giant panda</common_name>
 608                                                               <rank>species</rank>
 609                                                               <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/3/3c/Giant_Panda_2004-03-2.jpg/800px-Giant_Panda_2004-03-2.jpg</uri>
 610                                                             </taxonomy>
 611                                                           </clade>
 612                                                           <clade>
 613                                                             <name>CANFA</name>
 614                                                             <taxonomy>
 615                                                               <id provider="uniprot">9615</id>
 616                                                               <code>CANFA</code>
 617                                                               <scientific_name>Canis familiaris</scientific_name>
 618                                                               <common_name>Dog</common_name>
 619                                                               <synonym>Canis lupus familiaris</synonym>
 620                                                               <rank>subspecies</rank>
 621                                                               <uri>http://upload.wikimedia.org/wikipedia/commons/a/ab/Wikilabrador_jardin.JPG</uri>
 622                                                             </taxonomy>
 623                                                           </clade>
 624                                                         </clade>
 625                                                         <clade>
 626                                                           <name>FELCA</name>
 627                                                           <taxonomy>
 628                                                             <id provider="uniprot">9685</id>
 629                                                             <code>FELCA</code>
 630                                                             <scientific_name>Felis catus</scientific_name>
 631                                                             <common_name>Cat</common_name>
 632                                                             <synonym>Felis silvestris catus</synonym>
 633                                                             <rank>species</rank>
 634                                                             <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/9/9b/Domestic_cat_cropped.jpg/755px-Domestic_cat_cropped.jpg</uri>
 635                                                           </taxonomy>
 636                                                         </clade>
 637                                                       </clade>
 638                                                     </clade>
 639                                                     <clade>
 640                                                       <taxonomy>
 641                                                         <id provider="uniprot">9362</id>
 642                                                         <scientific_name>Insectivora</scientific_name>
 643                                                         <common_name>hedgehogs, shrews, moles and others</common_name>
 644                                                         <rank>order</rank>
 645                                                       </taxonomy>
 646                                                       <clade>
 647                                                         <taxonomy>
 648                                                           <id provider="uniprot">9365</id>
 649                                                           <code>ERIEU</code>
 650                                                           <scientific_name>Erinaceus europaeus</scientific_name>
 651                                                           <common_name>Western European hedgehog</common_name>
 652                                                           <rank>species</rank>
 653                                                           <uri>http://upload.wikimedia.org/wikipedia/commons/d/d4/Igel01.jpg</uri>
 654                                                         </taxonomy>
 655                                                       </clade>
 656                                                       <clade>
 657                                                         <taxonomy>
 658                                                           <id provider="uniprot">42254</id>
 659                                                           <code>SORAR</code>
 660                                                           <scientific_name>Sorex araneus</scientific_name>
 661                                                           <common_name>Eurasian common shrew</common_name>
 662                                                           <synonym>European shrew</synonym>
 663                                                           <rank>species</rank>
 664                                                           <uri>http://www.batraciens-reptiles.com/musaraigne2.jpg</uri>
 665                                                         </taxonomy>
 666                                                       </clade>
 667                                                     </clade>
 668                                                   </clade>
 669                                                 </clade>
 670                                                 <clade>
 671                                                   <taxonomy>
 672                                                     <scientific_name>Atlantogenata</scientific_name>
 673                                                   </taxonomy>
 674                                                   <clade>
 675                                                     <taxonomy>
 676                                                       <id provider="uniprot">311790</id>
 677                                                       <scientific_name>Afrotheria</scientific_name>
 678                                                       <rank>superorder</rank>
 679                                                     </taxonomy>
 680                                                     <clade>
 681                                                       <taxonomy>
 682                                                         <scientific_name>Paenungulata</scientific_name>
 683                                                       </taxonomy>
 684                                                       <clade>
 685                                                         <taxonomy>
 686                                                           <id provider="uniprot">9785</id>
 687                                                           <code>LOXAF</code>
 688                                                           <scientific_name>Loxodonta africana</scientific_name>
 689                                                           <common_name>African savanna elephant</common_name>
 690                                                           <rank>species</rank>
 691                                                           <uri>http://animaldiversity.ummz.umich.edu/site/resources/susan_hoffman/elephants.jpg</uri>
 692                                                         </taxonomy>
 693                                                       </clade>
 694                                                       <clade>
 695                                                         <taxonomy>
 696                                                           <id provider="uniprot">9813</id>
 697                                                           <code>PROCA</code>
 698                                                           <scientific_name>Procavia capensis</scientific_name>
 699                                                           <common_name>Cape hyrax</common_name>
 700                                                           <synonym>Rock dassie</synonym>
 701                                                           <rank>species</rank>
 702                                                           <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/1206/0460.jpeg</uri>
 703                                                         </taxonomy>
 704                                                       </clade>
 705                                                     </clade>
 706                                                     <clade>
 707                                                       <taxonomy>
 708                                                         <id provider="uniprot">9371</id>
 709                                                         <code>ECHTE</code>
 710                                                         <scientific_name>Echinops telfairi</scientific_name>
 711                                                         <common_name>Lesser hedgehog tenrec</common_name>
 712                                                         <rank>species</rank>
 713                                                         <uri>http://animaldiversity.ummz.umich.edu/site/resources/david_kupitz/etelfairi.jpg</uri>
 714                                                       </taxonomy>
 715                                                     </clade>
 716                                                   </clade>
 717                                                   <clade>
 718                                                     <taxonomy>
 719                                                       <id provider="uniprot">9348</id>
 720                                                       <scientific_name>Xenarthra</scientific_name>
 721                                                       <synonym>Edentata</synonym>
 722                                                       <rank>superorder</rank>
 723                                                     </taxonomy>
 724                                                     <clade>
 725                                                       <taxonomy>
 726                                                         <id provider="uniprot">9358</id>
 727                                                         <code>CHOHO</code>
 728                                                         <scientific_name>Choloepus hoffmanni</scientific_name>
 729                                                         <common_name>Hoffmann&apos;s two-fingered sloth</common_name>
 730                                                         <rank>species</rank>
 731                                                         <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/8/89/Sloth8.jpg/800px-Sloth8.jpg</uri>
 732                                                       </taxonomy>
 733                                                     </clade>
 734                                                     <clade>
 735                                                       <taxonomy>
 736                                                         <id provider="uniprot">9361</id>
 737                                                         <code>DASNO</code>
 738                                                         <scientific_name>Dasypus novemcinctus</scientific_name>
 739                                                         <common_name>Nine-banded armadillo</common_name>
 740                                                         <rank>species</rank>
 741                                                         <uri>http://images.enature.com/mammals/mammals_l/ma0154_1l.jpg</uri>
 742                                                         <uri>http://anthropometaphors.files.wordpress.com/2008/11/nine-banded-armadillo41.jpg</uri>
 743                                                       </taxonomy>
 744                                                     </clade>
 745                                                   </clade>
 746                                                 </clade>
 747                                               </clade>
 748                                               <clade>
 749                                                 <taxonomy>
 750                                                   <id provider="uniprot">9263</id>
 751                                                   <scientific_name>Metatheria</scientific_name>
 752                                                   <common_name>Marsupials</common_name>
 753                                                 </taxonomy>
 754                                                 <reference doi="10.1016/j.ympev.2004.05.004">
 755                                                   <desc>First combined cladistic analysis of marsupial mammal interrelationships</desc>
 756                                                 </reference>
 757                                                 <reference>
 758                                                 </reference>
 759                                                 <clade>
 760                                                   <taxonomy>
 761                                                     <scientific_name>Eometatheria</scientific_name>
 762                                                   </taxonomy>
 763                                                   <clade>
 764                                                     <taxonomy>
 765                                                       <id provider="uniprot">9315</id>
 766                                                       <code>MACEU</code>
 767                                                       <scientific_name>Macropus eugenii</scientific_name>
 768                                                       <common_name>Tammar wallaby</common_name>
 769                                                       <rank>species</rank>
 770                                                       <uri>http://upload.wikimedia.org/wikipedia/commons/d/de/Macropus_eugenii.jpg</uri>
 771                                                     </taxonomy>
 772                                                   </clade>
 773                                                   <clade>
 774                                                     <taxonomy>
 775                                                       <id provider="uniprot">9305</id>
 776                                                       <code>SARHA</code>
 777                                                       <scientific_name>Sarcophilus harrisii</scientific_name>
 778                                                       <common_name>Tasmanian devil</common_name>
 779                                                       <synonym>Sarcophilus laniarius</synonym>
 780                                                       <rank>species</rank>
 781                                                       <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/3/3b/Sarcophilus_harrisii_-Healesville_Sanctuary-8a.jpg/727px-Sarcophilus_harrisii_-Healesville_Sanctuary-8a.jpg</uri>
 782                                                     </taxonomy>
 783                                                   </clade>
 784                                                 </clade>
 785                                                 <clade>
 786                                                   <name>MONDO</name>
 787                                                   <taxonomy>
 788                                                     <id provider="uniprot">13616</id>
 789                                                     <code>MONDO</code>
 790                                                     <scientific_name>Monodelphis domestica</scientific_name>
 791                                                     <common_name>Short-tailed gray opossum</common_name>
 792                                                     <rank>species</rank>
 793                                                     <uri>http://animaldiversity.ummz.umich.edu/site/resources/phil_myers/classic/monodelphis.jpg/medium.jpg</uri>
 794                                                   </taxonomy>
 795                                                 </clade>
 796                                               </clade>
 797                                             </clade>
 798                                             <clade>
 799                                               <name>ORNAN</name>
 800                                               <taxonomy>
 801                                                 <id provider="uniprot">9258</id>
 802                                                 <code>ORNAN</code>
 803                                                 <scientific_name>Ornithorhynchus anatinus</scientific_name>
 804                                                 <common_name>Duckbill platypus</common_name>
 805                                                 <rank>species</rank>
 806                                                 <uri>http://www.biolib.cz/IMG/GAL/39610.jpg</uri>
 807                                               </taxonomy>
 808                                             </clade>
 809                                           </clade>
 810                                           <clade>
 811                                             <name>Diapsida</name>
 812                                             <clade>
 813                                               <name>Neognathae</name>
 814                                               <taxonomy>
 815                                                 <id provider="uniprot">8825</id>
 816                                                 <scientific_name>Neognathae</scientific_name>
 817                                                 <rank>superorder</rank>
 818                                               </taxonomy>
 819                                               <clade>
 820                                                 <name>Phasianidae &amp; Anatidae (waterfowl)</name>
 821                                                 <clade>
 822                                                   <taxonomy>
 823                                                     <id provider="uniprot">9005</id>
 824                                                     <scientific_name>Phasianidae</scientific_name>
 825                                                     <rank>family</rank>
 826                                                   </taxonomy>
 827                                                   <clade>
 828                                                     <name>CHICK</name>
 829                                                     <taxonomy>
 830                                                       <id provider="uniprot">9031</id>
 831                                                       <code>CHICK</code>
 832                                                       <scientific_name>Gallus gallus</scientific_name>
 833                                                       <common_name>Chicken</common_name>
 834                                                       <synonym>Gallus domesticus</synonym>
 835                                                       <rank>species</rank>
 836                                                       <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/f/f8/Rooster04_adjusted.jpg/800px-Rooster04_adjusted.jpg</uri>
 837                                                     </taxonomy>
 838                                                   </clade>
 839                                                   <clade>
 840                                                     <taxonomy>
 841                                                       <id provider="uniprot">9103</id>
 842                                                       <code>MELGA</code>
 843                                                       <scientific_name>Meleagris gallopavo</scientific_name>
 844                                                       <common_name>Common turkey</common_name>
 845                                                       <rank>species</rank>
 846                                                       <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0205/0858.jpeg</uri>
 847                                                     </taxonomy>
 848                                                   </clade>
 849                                                 </clade>
 850                                                 <clade>
 851                                                   <taxonomy>
 852                                                     <id provider="uniprot">8839</id>
 853                                                     <code>ANAPL</code>
 854                                                     <scientific_name>Anas platyrhynchos</scientific_name>
 855                                                     <common_name>Domestic duck</common_name>
 856                                                     <synonym>Anas boschas</synonym>
 857                                                     <rank>species</rank>
 858                                                     <uri>http://content.ornith.cornell.edu/UEWebApp/images/MPR_070302_100009_L.jpg</uri>
 859                                                   </taxonomy>
 860                                                 </clade>
 861                                               </clade>
 862                                               <clade>
 863                                                 <name>TAEGU</name>
 864                                                 <taxonomy>
 865                                                   <id provider="uniprot">59729</id>
 866                                                   <code>TAEGU</code>
 867                                                   <scientific_name>Taeniopygia guttata</scientific_name>
 868                                                   <common_name>Zebra finch</common_name>
 869                                                   <synonym>Poephila guttata</synonym>
 870                                                   <rank>species</rank>
 871                                                   <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/8/84/Taeniopygia_guttata_-_front_view_-_dundee_wildlife_park.jpg/355px-Taeniopygia_guttata_-_front_view_-_dundee_wildlife_park.jpg</uri>
 872                                                 </taxonomy>
 873                                               </clade>
 874                                             </clade>
 875                                             <clade>
 876                                               <name>ANOCA</name>
 877                                               <taxonomy>
 878                                                 <id provider="eol">795869</id>
 879                                                 <code>ANOCA</code>
 880                                                 <scientific_name>Anolis carolinensis</scientific_name>
 881                                                 <authority>Voigt, 1832</authority>
 882                                                 <common_name>Green anole</common_name>
 883                                                 <synonym>American chameleon</synonym>
 884                                                 <rank>species</rank>
 885                                                 <uri>http://content61.eol.org/content/2009/09/20/01/05528_580_360.jpg</uri>
 886                                                 <uri>http://content61.eol.org/content/2008/10/08/13/66818_580_360.jpg</uri>
 887                                               </taxonomy>
 888                                             </clade>
 889                                           </clade>
 890                                         </clade>
 891                                         <clade>
 892                                           <taxonomy>
 893                                             <id provider="uniprot">8353</id>
 894                                             <scientific_name>Xenopus</scientific_name>
 895                                             <rank>genus</rank>
 896                                           </taxonomy>
 897                                           <clade>
 898                                             <name>XENTR</name>
 899                                             <taxonomy>
 900                                               <id provider="uniprot">8364</id>
 901                                               <code>XENTR</code>
 902                                               <scientific_name>Xenopus tropicalis</scientific_name>
 903                                               <common_name>Western clawed frog</common_name>
 904                                               <synonym>Silurana tropicalis</synonym>
 905                                               <rank>species</rank>
 906                                               <uri>http://genoweb.univ-rennes1.fr/OGP/xenopus%20tropicalis.jpg</uri>
 907                                             </taxonomy>
 908                                           </clade>
 909                                           <clade>
 910                                             <taxonomy>
 911                                               <id provider="uniprot">8355</id>
 912                                               <code>XENLA</code>
 913                                               <scientific_name>Xenopus laevis</scientific_name>
 914                                               <authority>Daudin, 1802</authority>
 915                                               <common_name>African clawed frog</common_name>
 916                                               <synonym>Bufo laevis</synonym>
 917                                               <rank>species</rank>
 918                                               <uri>http://upload.wikimedia.org/wikipedia/commons/e/e3/Xenopus_laevis.jpg</uri>
 919                                             </taxonomy>
 920                                           </clade>
 921                                         </clade>
 922                                       </clade>
 923                                       <clade>
 924                                         <name>Teleostei</name>
 925                                         <taxonomy>
 926                                           <id provider="uniprot">32443</id>
 927                                           <scientific_name>Teleostei</scientific_name>
 928                                         </taxonomy>
 929                                         <clade>
 930                                           <taxonomy>
 931                                             <id provider="uniprot">123368</id>
 932                                             <scientific_name>Acanthomorpha</scientific_name>
 933                                           </taxonomy>
 934                                           <clade>
 935                                             <taxonomy>
 936                                               <id provider="uniprot">32485</id>
 937                                               <scientific_name>Percomorpha</scientific_name>
 938                                             </taxonomy>
 939                                             <clade>
 940                                               <name>Smegmamorpha</name>
 941                                               <clade>
 942                                                 <name>GASAC</name>
 943                                                 <taxonomy>
 944                                                   <id provider="uniprot">69293</id>
 945                                                   <code>GASAC</code>
 946                                                   <scientific_name>Gasterosteus aculeatus</scientific_name>
 947                                                   <common_name>Three-spined stickleback</common_name>
 948                                                   <rank>species</rank>
 949                                                   <uri>http://www.fiskbasen.se/images/gasterosteus_aculeatus.jpg</uri>
 950                                                 </taxonomy>
 951                                               </clade>
 952                                               <clade>
 953                                                 <name>ORYLA</name>
 954                                                 <taxonomy>
 955                                                   <id provider="uniprot">8090</id>
 956                                                   <code>ORYLA</code>
 957                                                   <scientific_name>Oryzias latipes</scientific_name>
 958                                                   <common_name>Medaka fish</common_name>
 959                                                   <synonym>Japanese ricefish</synonym>
 960                                                   <rank>species</rank>
 961                                                   <uri>http://upload.wikimedia.org/wikipedia/commons/4/49/Nihonmedaka.jpg</uri>
 962                                                 </taxonomy>
 963                                               </clade>
 964                                             </clade>
 965                                             <clade>
 966                                               <taxonomy>
 967                                                 <id provider="uniprot">31031</id>
 968                                                 <scientific_name>Tetraodontidae</scientific_name>
 969                                                 <common_name>puffers</common_name>
 970                                                 <rank>family</rank>
 971                                               </taxonomy>
 972                                               <clade>
 973                                                 <name>FUGRU</name>
 974                                                 <taxonomy>
 975                                                   <id provider="uniprot">31033</id>
 976                                                   <code>FUGRU</code>
 977                                                   <scientific_name>Takifugu rubripes</scientific_name>
 978                                                   <common_name>Japanese pufferfish</common_name>
 979                                                   <synonym>Fugu rubripes</synonym>
 980                                                   <rank>species</rank>
 981                                                   <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/2/25/Fugu_in_Tank.jpg/800px-Fugu_in_Tank.jpg</uri>
 982                                                 </taxonomy>
 983                                               </clade>
 984                                               <clade>
 985                                                 <name>TETNG</name>
 986                                                 <taxonomy>
 987                                                   <id provider="uniprot">99883</id>
 988                                                   <code>TETNG</code>
 989                                                   <scientific_name>Tetraodon nigroviridis</scientific_name>
 990                                                   <common_name>Green puffer</common_name>
 991                                                   <synonym>Chelonodon nigroviridis</synonym>
 992                                                   <rank>species</rank>
 993                                                   <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/b/b6/Tetraodon_nigroviridis_1.jpg/800px-Tetraodon_nigroviridis_1.jpg</uri>
 994                                                 </taxonomy>
 995                                               </clade>
 996                                             </clade>
 997                                             <clade>
 998                                               <taxonomy>
 999                                                 <id provider="uniprot">8128</id>
1000                                                 <code>ORENI</code>
1001                                                 <scientific_name>Tilapia nilotica</scientific_name>
1002                                                 <authority>Linnaeus, 1758</authority>
1003                                                 <common_name>Nile tilapia</common_name>
1004                                                 <synonym>Tilapia nilotica</synonym>
1005                                                 <rank>species</rank>
1006                                                 <uri>http://www.biolib.cz/IMG/GAL/87809.jpg</uri>
1007                                               </taxonomy>
1008                                             </clade>
1009                                           </clade>
1010                                           <clade>
1011                                             <taxonomy>
1012                                               <id provider="uniprot">8049</id>
1013                                               <code>GADMO</code>
1014                                               <scientific_name>Gadus morhua</scientific_name>
1015                                               <common_name>Atlantic cod</common_name>
1016                                               <rank>species</rank>
1017                                               <uri>http://www.marinbi.com/g-morhua.jpg</uri>
1018                                             </taxonomy>
1019                                           </clade>
1020                                         </clade>
1021                                         <clade>
1022                                           <name>DANRE</name>
1023                                           <taxonomy>
1024                                             <id provider="uniprot">7955</id>
1025                                             <code>DANRE</code>
1026                                             <scientific_name>Danio rerio</scientific_name>
1027                                             <common_name>Zebrafish</common_name>
1028                                             <synonym>Brachydanio rerio</synonym>
1029                                             <rank>species</rank>
1030                                             <uri>http://fishbase.org.cn/images/species/Darer_m0.jpg</uri>
1031                                           </taxonomy>
1032                                         </clade>
1033                                       </clade>
1034                                     </clade>
1035                                     <clade>
1036                                       <taxonomy>
1037                                         <id provider="uniprot">7868</id>
1038                                         <code>CALMI</code>
1039                                         <scientific_name>Callorhynchus milii</scientific_name>
1040                                         <common_name>Australian ghost shark</common_name>
1041                                         <synonym>Australian ghost shark</synonym>
1042                                         <rank>species</rank>
1043                                         <uri>http://www.tudiscovery.com/tiburones/que_es/popup_que/asset/07914907646434433_elephant_shark_380x290.jpg</uri>
1044                                       </taxonomy>
1045                                     </clade>
1046                                   </clade>
1047                                   <clade>
1048                                     <taxonomy>
1049                                       <id provider="uniprot">7757</id>
1050                                       <code>PETMA</code>
1051                                       <scientific_name>Petromyzon marinus</scientific_name>
1052                                       <common_name>Sea lamprey</common_name>
1053                                       <rank>species</rank>
1054                                       <uri>http://www.uk-fish.info/pics/sealampray01.jpg</uri>
1055                                     </taxonomy>
1056                                   </clade>
1057                                 </clade>
1058                                 <clade>
1059                                   <name>Urochordata</name>
1060                                   <taxonomy>
1061                                     <id provider="uniprot">7712</id>
1062                                     <scientific_name>Urochordata</scientific_name>
1063                                     <rank>subphylum</rank>
1064                                   </taxonomy>
1065                                   <clade>
1066                                     <taxonomy>
1067                                       <id provider="uniprot">7718</id>
1068                                       <scientific_name>Ciona</scientific_name>
1069                                       <rank>genus</rank>
1070                                     </taxonomy>
1071                                     <clade>
1072                                       <name>CIOIN</name>
1073                                       <taxonomy>
1074                                         <id provider="uniprot">7719</id>
1075                                         <code>CIOIN</code>
1076                                         <scientific_name>Ciona intestinalis</scientific_name>
1077                                         <common_name>Transparent sea squirt</common_name>
1078                                         <synonym>Ascidia intestinalis</synonym>
1079                                         <rank>species</rank>
1080                                         <uri>http://adl.brs.gov.au/marinepests/images/Ciona_intestinalis2.jpg</uri>
1081                                       </taxonomy>
1082                                     </clade>
1083                                     <clade>
1084                                       <name>CIOSA</name>
1085                                       <taxonomy>
1086                                         <id provider="uniprot">51511</id>
1087                                         <code>CIOSA</code>
1088                                         <scientific_name>Ciona savignyi</scientific_name>
1089                                         <common_name>Pacific transparent sea squirt</common_name>
1090                                         <rank>species</rank>
1091                                         <uri>http://www.pnwscuba.com/invasives/photos/ciona4.jpg</uri>
1092                                       </taxonomy>
1093                                     </clade>
1094                                   </clade>
1095                                   <clade>
1096                                     <name>OIKDI</name>
1097                                     <taxonomy>
1098                                       <id provider="ncbi">34765</id>
1099                                       <code>OIKDI</code>
1100                                       <scientific_name>Oikopleura dioica</scientific_name>
1101                                       <common_name>Tunicate</common_name>
1102                                       <rank>species</rank>
1103                                       <uri>http://jellieszone.com/images/oikopleura.jpg</uri>
1104                                     </taxonomy>
1105                                   </clade>
1106                                 </clade>
1107                               </clade>
1108                               <clade>
1109                                 <name>BRAFL</name>
1110                                 <taxonomy>
1111                                   <id provider="uniprot">7739</id>
1112                                   <code>BRAFL</code>
1113                                   <scientific_name>Branchiostoma floridae</scientific_name>
1114                                   <common_name>Florida lancelet</common_name>
1115                                   <synonym>Amphioxus</synonym>
1116                                   <rank>species</rank>
1117                                   <uri>http://genome.jgi-psf.org/Brafl1/Amphioxus-1.jpg</uri>
1118                                 </taxonomy>
1119                               </clade>
1120                             </clade>
1121                             <clade>
1122                               <name>Hemichordata &amp; Echinodermata</name>
1123                               <clade>
1124                                 <name>SACKO</name>
1125                                 <taxonomy>
1126                                   <id provider="uniprot">10224</id>
1127                                   <code>SACKO</code>
1128                                   <scientific_name>Saccoglossus kowalevskii</scientific_name>
1129                                   <authority>Agassiz, 1873</authority>
1130                                   <common_name>Acorn worm</common_name>
1131                                   <rank>species</rank>
1132                                   <uri>http://www.amnh.org/exhibitions/hall_tour/spectrum/specimens/a158.jpg</uri>
1133                                 </taxonomy>
1134                               </clade>
1135                               <clade>
1136                                 <name>STRPU</name>
1137                                 <taxonomy>
1138                                   <id provider="uniprot">7668</id>
1139                                   <code>STRPU</code>
1140                                   <scientific_name>Strongylocentrotus purpuratus</scientific_name>
1141                                   <common_name>Purple sea urchin</common_name>
1142                                   <rank>species</rank>
1143                                   <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/f/f4/Strongylocentrotus_purpuratus_1.jpg/724px-Strongylocentrotus_purpuratus_1.jpg</uri>
1144                                 </taxonomy>
1145                               </clade>
1146                             </clade>
1147                           </clade>
1148                           <clade>
1149                             <name>Protostomia</name>
1150                             <clade>
1151                               <name>Ecdysozoa</name>
1152                               <clade>
1153                                 <taxonomy>
1154                                   <id provider="uniprot">6656</id>
1155                                   <scientific_name>Arthropoda</scientific_name>
1156                                   <rank>phylum</rank>
1157                                 </taxonomy>
1158                                 <clade>
1159                                   <taxonomy>
1160                                     <id provider="uniprot">197563</id>
1161                                     <scientific_name>Mandibulata</scientific_name>
1162                                   </taxonomy>
1163                                   <clade>
1164                                     <name>Pancrustacea</name>
1165                                     <clade>
1166                                       <taxonomy>
1167                                         <id provider="uniprot">33340</id>
1168                                         <scientific_name>Neoptera</scientific_name>
1169                                         <rank>subclass</rank>
1170                                       </taxonomy>
1171                                       <clade>
1172                                         <taxonomy>
1173                                           <id provider="uniprot">33392</id>
1174                                           <scientific_name>Endopterygota</scientific_name>
1175                                           <rank>infraclass</rank>
1176                                         </taxonomy>
1177                                         <clade>
1178                                           <name>Hymenoptera &amp; Lepidoptera &amp; Diptera</name>
1179                                           <clade>
1180                                             <name>Lepidoptera &amp; Diptera</name>
1181                                             <clade>
1182                                               <taxonomy>
1183                                                 <id provider="uniprot">7147</id>
1184                                                 <scientific_name>Diptera</scientific_name>
1185                                                 <rank>order</rank>
1186                                               </taxonomy>
1187                                               <clade>
1188                                                 <taxonomy>
1189                                                   <id provider="uniprot">7157</id>
1190                                                   <scientific_name>Culicidae</scientific_name>
1191                                                   <common_name>mosquitos</common_name>
1192                                                   <rank>family</rank>
1193                                                 </taxonomy>
1194                                                 <clade>
1195                                                   <name>AEDAE</name>
1196                                                   <taxonomy>
1197                                                     <id provider="uniprot">7159</id>
1198                                                     <code>AEDAE</code>
1199                                                     <scientific_name>Aedes aegypti</scientific_name>
1200                                                     <common_name>Yellowfever mosquito</common_name>
1201                                                     <synonym>Culex aegypti</synonym>
1202                                                     <rank>species</rank>
1203                                                     <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/4/48/Aedes_aegypti_biting_human.jpg/757px-Aedes_aegypti_biting_human.jpg</uri>
1204                                                   </taxonomy>
1205                                                 </clade>
1206                                                 <clade>
1207                                                   <name>ANOGA</name>
1208                                                   <taxonomy>
1209                                                     <id provider="uniprot">7165</id>
1210                                                     <code>ANOGA</code>
1211                                                     <scientific_name>Anopheles gambiae</scientific_name>
1212                                                     <common_name>African malaria mosquito</common_name>
1213                                                     <rank>species</rank>
1214                                                     <uri>http://upload.wikimedia.org/wikipedia/commons/e/e9/Anopheles_gambiae_Mosquito.jpg</uri>
1215                                                   </taxonomy>
1216                                                 </clade>
1217                                                 <clade>
1218                                                   <name>CULPI</name>
1219                                                   <taxonomy>
1220                                                     <id provider="uniprot">7175</id>
1221                                                     <code>CULPI</code>
1222                                                     <scientific_name>Culex pipiens</scientific_name>
1223                                                     <common_name>House mosquito</common_name>
1224                                                     <rank>species</rank>
1225                                                     <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/3/35/Culex_pipiens_2007-1.jpg/628px-Culex_pipiens_2007-1.jpg</uri>
1226                                                   </taxonomy>
1227                                                 </clade>
1228                                               </clade>
1229                                               <clade>
1230                                                 <taxonomy>
1231                                                   <id provider="uniprot">32341</id>
1232                                                   <scientific_name>Sophophora</scientific_name>
1233                                                   <rank>subgenus</rank>
1234                                                 </taxonomy>
1235                                                 <clade>
1236                                                   <name>DROME</name>
1237                                                   <taxonomy>
1238                                                     <id provider="uniprot">7227</id>
1239                                                     <code>DROME</code>
1240                                                     <scientific_name>Drosophila melanogaster</scientific_name>
1241                                                     <common_name>Fruit fly</common_name>
1242                                                     <rank>species</rank>
1243                                                   </taxonomy>
1244                                                 </clade>
1245                                                 <clade>
1246                                                   <name>DROPS</name>
1247                                                   <taxonomy>
1248                                                     <id provider="uniprot">46245</id>
1249                                                     <code>DROPS</code>
1250                                                     <scientific_name>Drosophila pseudoobscura pseudoobscura</scientific_name>
1251                                                     <common_name>Fruit fly</common_name>
1252                                                     <rank>subspecies</rank>
1253                                                   </taxonomy>
1254                                                 </clade>
1255                                               </clade>
1256                                             </clade>
1257                                             <clade>
1258                                               <name>BOMMO</name>
1259                                               <taxonomy>
1260                                                 <id provider="uniprot">7091</id>
1261                                                 <code>BOMMO</code>
1262                                                 <scientific_name>Bombyx mori</scientific_name>
1263                                                 <common_name>Silk moth</common_name>
1264                                                 <rank>species</rank>
1265                                               </taxonomy>
1266                                             </clade>
1267                                           </clade>
1268                                           <clade>
1269                                             <taxonomy>
1270                                               <id provider="uniprot">7400</id>
1271                                               <scientific_name>Apocrita</scientific_name>
1272                                               <common_name>wasps, ants and bees</common_name>
1273                                             </taxonomy>
1274                                             <clade>
1275                                               <taxonomy>
1276                                                 <id provider="uniprot">7434</id>
1277                                                 <scientific_name>Aculeata</scientific_name>
1278                                                 <rank>suborder</rank>
1279                                               </taxonomy>
1280                                               <clade>
1281                                                 <name>APIME</name>
1282                                                 <taxonomy>
1283                                                   <id provider="uniprot">7460</id>
1284                                                   <code>APIME</code>
1285                                                   <scientific_name>Apis mellifera</scientific_name>
1286                                                   <common_name>Honeybee</common_name>
1287                                                   <rank>species</rank>
1288                                                 </taxonomy>
1289                                               </clade>
1290                                               <clade>
1291                                                 <taxonomy>
1292                                                   <id provider="uniprot">12957</id>
1293                                                   <code>ATTCE</code>
1294                                                   <scientific_name>Atta cephalotes</scientific_name>
1295                                                   <authority>Linnaeus, 1758</authority>
1296                                                   <common_name>Leafcutter ant</common_name>
1297                                                   <rank>species</rank>
1298                                                   <uri>http://upload.wikimedia.org/wikipedia/commons/4/4e/Leaf-cutting_ant.jpg</uri>
1299                                                 </taxonomy>
1300                                               </clade>
1301                                             </clade>
1302                                             <clade>
1303                                               <name>NASVI</name>
1304                                               <taxonomy>
1305                                                 <id provider="uniprot">7425</id>
1306                                                 <code>NASVI</code>
1307                                                 <scientific_name>Nasonia vitripennis</scientific_name>
1308                                                 <common_name>Parasitic wasp</common_name>
1309                                                 <rank>species</rank>
1310                                               </taxonomy>
1311                                             </clade>
1312                                           </clade>
1313                                         </clade>
1314                                         <clade>
1315                                           <name>TRICA</name>
1316                                           <taxonomy>
1317                                             <id provider="uniprot">7070</id>
1318                                             <code>TRICA</code>
1319                                             <scientific_name>Tribolium castaneum</scientific_name>
1320                                             <common_name>Red flour beetle</common_name>
1321                                             <rank>species</rank>
1322                                           </taxonomy>
1323                                         </clade>
1324                                       </clade>
1325                                       <clade>
1326                                         <taxonomy>
1327                                           <id provider="uniprot">7524</id>
1328                                           <scientific_name>Hemiptera</scientific_name>
1329                                           <rank>order</rank>
1330                                         </taxonomy>
1331                                         <clade>
1332                                           <name>ACYPI</name>
1333                                           <taxonomy>
1334                                             <id provider="uniprot">7029</id>
1335                                             <code>ACYPI</code>
1336                                             <scientific_name>Acyrthosiphon pisum</scientific_name>
1337                                             <common_name>Pea aphid</common_name>
1338                                             <rank>species</rank>
1339                                           </taxonomy>
1340                                         </clade>
1341                                         <clade>
1342                                           <name>RHOPR</name>
1343                                           <taxonomy>
1344                                             <id provider="uniprot">13249</id>
1345                                             <code>RHOPR</code>
1346                                             <scientific_name>Rhodnius prolixus</scientific_name>
1347                                             <common_name>Triatomid bug</common_name>
1348                                             <rank>species</rank>
1349                                             <uri>http://upload.wikimedia.org/wikipedia/commons/b/b9/Rhodnius_prolixus.jpg</uri>
1350                                           </taxonomy>
1351                                         </clade>
1352                                       </clade>
1353                                     </clade>
1354                                     <clade>
1355                                       <taxonomy>
1356                                         <id provider="uniprot">6658</id>
1357                                         <scientific_name>Branchiopoda</scientific_name>
1358                                         <rank>class</rank>
1359                                       </taxonomy>
1360                                       <clade>
1361                                         <taxonomy>
1362                                           <id provider="uniprot">6661</id>
1363                                           <code>ARTSF</code>
1364                                           <scientific_name>Artemia franciscana</scientific_name>
1365                                           <common_name>Brine shrimp</common_name>
1366                                           <synonym>Artemia sanfranciscana</synonym>
1367                                           <rank>species</rank>
1368                                           <uri>http://www.alireza-asem.ir/images/Artemia.jpg</uri>
1369                                         </taxonomy>
1370                                       </clade>
1371                                       <clade>
1372                                         <name>DAPPU</name>
1373                                         <taxonomy>
1374                                           <id provider="uniprot">6669</id>
1375                                           <code>DAPPU</code>
1376                                           <scientific_name>Daphnia pulex</scientific_name>
1377                                           <common_name>Water flea</common_name>
1378                                           <rank>species</rank>
1379                                           <uri>http://www.microscopy-uk.org.uk/mag/imgjun99/daphni.jpg</uri>
1380                                         </taxonomy>
1381                                       </clade>
1382                                     </clade>
1383                                   </clade>
1384                                   <clade>
1385                                     <taxonomy>
1386                                       <id provider="uniprot">61985</id>
1387                                       <scientific_name>Myriapoda</scientific_name>
1388                                       <rank>subphylum</rank>
1389                                     </taxonomy>
1390                                     <clade>
1391                                       <taxonomy>
1392                                         <id provider="uniprot">7553</id>
1393                                         <scientific_name>Diplopoda</scientific_name>
1394                                         <common_name>millipedes</common_name>
1395                                         <rank>class</rank>
1396                                       </taxonomy>
1397                                       <clade>
1398                                         <taxonomy>
1399                                           <id provider="uniprot">118561</id>
1400                                           <scientific_name>Helminthomorpha</scientific_name>
1401                                           <rank>subclass</rank>
1402                                         </taxonomy>
1403                                         <clade>
1404                                           <taxonomy>
1405                                             <id provider="uniprot">364406</id>
1406                                             <scientific_name>Antrokoreana gracilipes</scientific_name>
1407                                             <rank>species</rank>
1408                                             <uri>http://www.gwbaekdu.com/data/2d/%EA%B3%A1%EC%84%9D%EA%B5%B4_4(%EB%93%B1%EC%A4%84%EA%B5%B4%EB%85%B8%EB%9E%98%EA%B8%B0).jpg</uri>
1409                                           </taxonomy>
1410                                         </clade>
1411                                         <clade>
1412                                           <taxonomy>
1413                                             <id provider="uniprot">174156</id>
1414                                             <code>NARAN</code>
1415                                             <scientific_name>Narceus annularis</scientific_name>
1416                                             <common_name>Millipede</common_name>
1417                                             <rank>species</rank>
1418                                             <uri>http://i.pbase.com/g4/59/68959/2/59864073.narceus0705062large.jpg</uri>
1419                                           </taxonomy>
1420                                         </clade>
1421                                       </clade>
1422                                       <clade>
1423                                         <taxonomy>
1424                                           <id provider="uniprot">52428</id>
1425                                           <scientific_name>Polyxenus lagurus</scientific_name>
1426                                           <common_name>bristly millipede</common_name>
1427                                           <rank>species</rank>
1428                                           <uri>http://upload.wikimedia.org/wikipedia/commons/5/54/Polyxenus.lagurus.1.jpg</uri>
1429                                         </taxonomy>
1430                                       </clade>
1431                                     </clade>
1432                                     <clade>
1433                                       <taxonomy>
1434                                         <id provider="uniprot">7540</id>
1435                                         <scientific_name>Chilopoda</scientific_name>
1436                                         <common_name>centipedes</common_name>
1437                                         <rank>class</rank>
1438                                       </taxonomy>
1439                                       <clade>
1440                                         <taxonomy>
1441                                           <id provider="uniprot">29022</id>
1442                                           <code>SCUCO</code>
1443                                           <scientific_name>Scutigera coleoptrata</scientific_name>
1444                                           <common_name>House centipede</common_name>
1445                                           <rank>species</rank>
1446                                           <uri>http://upload.wikimedia.org/wikipedia/commons/1/14/Scutigera_coleoptrata.JPG</uri>
1447                                         </taxonomy>
1448                                       </clade>
1449                                       <clade>
1450                                         <taxonomy>
1451                                           <id provider="uniprot">126957</id>
1452                                           <scientific_name>Strigamia maritima</scientific_name>
1453                                           <rank>species</rank>
1454                                           <uri>http://images.marinespecies.org/resized/22703_strigamia-maritima-male-loch-linnhe-scotland.jpg</uri>
1455                                         </taxonomy>
1456                                       </clade>
1457                                     </clade>
1458                                   </clade>
1459                                 </clade>
1460                                 <clade>
1461                                   <name>IXOSC</name>
1462                                   <taxonomy>
1463                                     <id provider="uniprot">6945</id>
1464                                     <code>IXOSC</code>
1465                                     <scientific_name>Ixodes scapularis</scientific_name>
1466                                     <common_name>Black-legged tick</common_name>
1467                                     <synonym>Deer tick</synonym>
1468                                     <rank>species</rank>
1469                                     <uri>http://upload.wikimedia.org/wikipedia/commons/8/8c/Deertick.jpg</uri>
1470                                   </taxonomy>
1471                                 </clade>
1472                               </clade>
1473                               <clade>
1474                                 <taxonomy>
1475                                   <id provider="uniprot">119089</id>
1476                                   <scientific_name>Chromadorea</scientific_name>
1477                                   <rank>class</rank>
1478                                 </taxonomy>
1479                                 <reference doi="10.1038/32160">
1480                                 </reference>
1481                                 <clade>
1482                                   <name>nematode Clade V</name>
1483                                   <clade>
1484                                     <name>Caenorhabditis</name>
1485                                     <taxonomy>
1486                                       <id provider="uniprot">6237</id>
1487                                       <scientific_name>Caenorhabditis</scientific_name>
1488                                       <rank>genus</rank>
1489                                     </taxonomy>
1490                                     <clade>
1491                                       <name>CAEBR</name>
1492                                       <taxonomy>
1493                                         <id provider="uniprot">6238</id>
1494                                         <code>CAEBR</code>
1495                                         <scientific_name>Caenorhabditis briggsae</scientific_name>
1496                                         <rank>species</rank>
1497                                       </taxonomy>
1498                                     </clade>
1499                                     <clade>
1500                                       <name>CAEEL</name>
1501                                       <taxonomy>
1502                                         <id provider="uniprot">6239</id>
1503                                         <code>CAEEL</code>
1504                                         <scientific_name>Caenorhabditis elegans</scientific_name>
1505                                         <rank>species</rank>
1506                                       </taxonomy>
1507                                     </clade>
1508                                   </clade>
1509                                   <clade>
1510                                     <name>PRIPA</name>
1511                                     <taxonomy>
1512                                       <id provider="uniprot">54126</id>
1513                                       <code>PRIPA</code>
1514                                       <scientific_name>Pristionchus pacificus</scientific_name>
1515                                       <rank>species</rank>
1516                                     </taxonomy>
1517                                   </clade>
1518                                 </clade>
1519                                 <clade>
1520                                   <name>BRUMA</name>
1521                                   <taxonomy>
1522                                     <id provider="uniprot">6279</id>
1523                                     <code>BRUMA</code>
1524                                     <scientific_name>Brugia malayi</scientific_name>
1525                                     <common_name>Filarial nematode worm</common_name>
1526                                     <rank>species</rank>
1527                                   </taxonomy>
1528                                 </clade>
1529                               </clade>
1530                             </clade>
1531                             <clade>
1532                               <name>Lophotrochozoa</name>
1533                               <clade>
1534                                 <name>Annelida &amp; Mollusca</name>
1535                                 <clade>
1536                                   <taxonomy>
1537                                     <id provider="uniprot">6340</id>
1538                                     <scientific_name>Annelida</scientific_name>
1539                                     <rank>phylum</rank>
1540                                   </taxonomy>
1541                                   <clade>
1542                                     <name>CAP</name>
1543                                     <taxonomy>
1544                                       <id provider="uniprot">283909</id>
1545                                       <scientific_name>Capitella teleta</scientific_name>
1546                                       <authority>Blake, Grassle &amp; Eckelbarger, 2009</authority>
1547                                       <synonym>Capitella sp. I</synonym>
1548                                       <rank>species</rank>
1549                                       <uri>http://genome.jgi-psf.org/Capca1/capitella.jpg</uri>
1550                                     </taxonomy>
1551                                   </clade>
1552                                   <clade>
1553                                     <taxonomy>
1554                                       <id provider="uniprot">6412</id>
1555                                       <code>HELRO</code>
1556                                       <scientific_name>Helobdella robusta</scientific_name>
1557                                       <common_name>Californian leech</common_name>
1558                                       <rank>species</rank>
1559                                       <uri>http://genome.jgi-psf.org/Helro1/Helro_leech.jpg</uri>
1560                                     </taxonomy>
1561                                   </clade>
1562                                 </clade>
1563                                 <clade>
1564                                   <taxonomy>
1565                                     <id provider="uniprot">6447</id>
1566                                     <scientific_name>Mollusca</scientific_name>
1567                                     <rank>phylum</rank>
1568                                   </taxonomy>
1569                                   <clade>
1570                                     <taxonomy>
1571                                       <id provider="uniprot">6448</id>
1572                                       <scientific_name>Gastropoda</scientific_name>
1573                                       <rank>class</rank>
1574                                     </taxonomy>
1575                                     <clade>
1576                                       <taxonomy>
1577                                         <id provider="uniprot">225164</id>
1578                                         <code>LOTGI</code>
1579                                         <scientific_name>Lottia gigantea</scientific_name>
1580                                         <common_name>Owl limpet</common_name>
1581                                         <rank>species</rank>
1582                                         <uri>http://nathistoc.bio.uci.edu/Molluscs/OwlLimpet1.jpg</uri>
1583                                       </taxonomy>
1584                                     </clade>
1585                                     <clade>
1586                                       <taxonomy>
1587                                         <id provider="uniprot">6500</id>
1588                                         <code>APLCA</code>
1589                                         <scientific_name>Aplysia californica</scientific_name>
1590                                         <common_name>California sea hare</common_name>
1591                                         <rank>species</rank>
1592                                         <uri>http://upload.wikimedia.org/wikipedia/commons/e/ef/Aplysia_californica.jpg</uri>
1593                                       </taxonomy>
1594                                     </clade>
1595                                   </clade>
1596                                   <clade>
1597                                     <taxonomy>
1598                                       <id provider="uniprot">29159</id>
1599                                       <code>CRAGI</code>
1600                                       <scientific_name>Crassostrea gigas</scientific_name>
1601                                       <authority>Thunberg, 1793</authority>
1602                                       <common_name>Pacific oyster</common_name>
1603                                       <synonym>Crassotrea gigas</synonym>
1604                                       <synonym>Crassostrea angulata</synonym>
1605                                       <synonym>Ostrea gigas</synonym>
1606                                       <rank>species</rank>
1607                                       <uri>http://www.marlin.ac.uk/imgs/o_cragig.jpg</uri>
1608                                     </taxonomy>
1609                                   </clade>
1610                                 </clade>
1611                               </clade>
1612                               <clade>
1613                                 <taxonomy>
1614                                   <id provider="uniprot">6157</id>
1615                                   <scientific_name>Platyhelminthes</scientific_name>
1616                                   <rank>phylum</rank>
1617                                 </taxonomy>
1618                                 <clade>
1619                                   <name>SCHMA</name>
1620                                   <taxonomy>
1621                                     <id provider="uniprot">6183</id>
1622                                     <code>SCHMA</code>
1623                                     <scientific_name>Schistosoma mansoni</scientific_name>
1624                                     <common_name>Blood fluke</common_name>
1625                                     <rank>species</rank>
1626                                   </taxonomy>
1627                                 </clade>
1628                                 <clade>
1629                                   <name>SCHMD</name>
1630                                   <taxonomy>
1631                                     <id provider="uniprot">79327</id>
1632                                     <code>SCHMD</code>
1633                                     <scientific_name>Schmidtea mediterranea</scientific_name>
1634                                     <common_name>Freshwater planarian flatworm</common_name>
1635                                     <rank>species</rank>
1636                                   </taxonomy>
1637                                 </clade>
1638                               </clade>
1639                             </clade>
1640                           </clade>
1641                         </clade>
1642                         <clade>
1643                           <name>Cnidaria</name>
1644                           <taxonomy>
1645                             <id provider="uniprot">6073</id>
1646                             <scientific_name>Cnidaria</scientific_name>
1647                             <rank>phylum</rank>
1648                           </taxonomy>
1649                           <clade>
1650                             <taxonomy>
1651                               <id provider="uniprot">6102</id>
1652                               <scientific_name>Hexacorallia</scientific_name>
1653                               <synonym>Ceriantipatharia</synonym>
1654                               <synonym>Zoantharia</synonym>
1655                               <rank>subclass</rank>
1656                             </taxonomy>
1657                             <clade>
1658                               <taxonomy>
1659                                 <id provider="uniprot">45351</id>
1660                                 <code>NEMVE</code>
1661                                 <scientific_name>Nematostella vectensis</scientific_name>
1662                                 <common_name>Starlet sea anemone</common_name>
1663                                 <rank>species</rank>
1664                               </taxonomy>
1665                             </clade>
1666                             <clade>
1667                               <taxonomy>
1668                                 <id provider="uniprot">70779</id>
1669                                 <code>ACRDI</code>
1670                                 <scientific_name>Acropora digitifera</scientific_name>
1671                                 <common_name>Staghorn coral</common_name>
1672                                 <rank>species</rank>
1673                                 <uri>http://www.botany.hawaii.edu/basch/uhnpscesu/htms/NPSAcorl/images/acropori/acrdigitif7.jpg</uri>
1674                               </taxonomy>
1675                             </clade>
1676                           </clade>
1677                           <clade>
1678                             <name>HYDMA</name>
1679                             <taxonomy>
1680                               <id provider="eol">9119928</id>
1681                               <code>HYDMA</code>
1682                               <scientific_name>Hydra magnipapillata</scientific_name>
1683                               <authority>Ito, 1947</authority>
1684                               <rank>species</rank>
1685                               <uri>http://www.nig.ac.jp/labs/OntoGen/magni.html</uri>
1686                             </taxonomy>
1687                           </clade>
1688                         </clade>
1689                       </clade>
1690                       <clade>
1691                         <name>TRIAD</name>
1692                         <taxonomy>
1693                           <id provider="uniprot">10228</id>
1694                           <code>TRIAD</code>
1695                           <scientific_name>Trichoplax adhaerens</scientific_name>
1696                           <synonym>Trichoplax reptans</synonym>
1697                           <rank>species</rank>
1698                         </taxonomy>
1699                         <reference doi="10.1073/pnas.0602076103">
1700                         </reference>
1701                       </clade>
1702                     </clade>
1703                     <clade>
1704                       <name>AMPQU</name>
1705                       <taxonomy>
1706                         <id provider="uniprot">400682</id>
1707                         <code>AMPQU</code>
1708                         <scientific_name>Amphimedon queenslandica</scientific_name>
1709                         <rank>species</rank>
1710                       </taxonomy>
1711                     </clade>
1712                   </clade>
1713                   <clade>
1714                     <taxonomy>
1715                       <id provider="uniprot">81524</id>
1716                       <scientific_name>Codonosigidae</scientific_name>
1717                       <rank>family</rank>
1718                     </taxonomy>
1719                     <clade>
1720                       <name>MONBE</name>
1721                       <taxonomy>
1722                         <id provider="uniprot">81824</id>
1723                         <code>MONBE</code>
1724                         <scientific_name>Monosiga brevicollis</scientific_name>
1725                         <common_name>Choanoflagellate</common_name>
1726                         <rank>species</rank>
1727                       </taxonomy>
1728                     </clade>
1729                     <clade>
1730                       <taxonomy>
1731                         <id provider="uniprot">946362</id>
1732                         <code>SALS5</code>
1733                         <scientific_name>Salpingoeca rosetta</scientific_name>
1734                         <synonym>Proterospongia sp. ATCC 50818</synonym>
1735                         <synonym>Salpingoeca sp. ATCC 50818</synonym>
1736                         <rank>species</rank>
1737                       </taxonomy>
1738                     </clade>
1739                   </clade>
1740                 </clade>
1741                 <clade>
1742                   <name>Ichthyophonida &amp; Filasterea</name>
1743                   <clade>
1744                     <taxonomy>
1745                       <id provider="uniprot">198625</id>
1746                       <scientific_name>Ichthyophonida</scientific_name>
1747                       <rank>order</rank>
1748                     </taxonomy>
1749                     <clade>
1750                       <taxonomy>
1751                         <id provider="uniprot">4881</id>
1752                         <code>AMOPA</code>
1753                         <scientific_name>Amoebidium parasiticum</scientific_name>
1754                         <rank>species</rank>
1755                         <uri>http://www.diark.org/img/species_pict/Amoebidium_parasiticum</uri>
1756                       </taxonomy>
1757                     </clade>
1758                     <clade>
1759                       <name>SPHARC</name>
1760                       <taxonomy>
1761                         <id provider="uniprot">72019</id>
1762                         <scientific_name>Sphaeroforma arctica</scientific_name>
1763                         <rank>species</rank>
1764                         <uri>http://www.sciencedirect.com/cache/MiamiImageURL/1-s2.0-S0168952507000236-gr2.jpg</uri>
1765                       </taxonomy>
1766                     </clade>
1767                   </clade>
1768                   <clade>
1769                     <taxonomy>
1770                       <scientific_name>Filasterea</scientific_name>
1771                     </taxonomy>
1772                     <reference doi="10.1371/journal.pone.0002098">
1773                     </reference>
1774                     <reference>
1775                     </reference>
1776                     <clade>
1777                       <name>CAPOWC</name>
1778                       <taxonomy>
1779                         <id provider="uniprot">192875</id>
1780                         <scientific_name>Capsaspora owczarzaki</scientific_name>
1781                         <rank>species</rank>
1782                       </taxonomy>
1783                     </clade>
1784                     <clade>
1785                       <name>MINVIB</name>
1786                       <taxonomy>
1787                         <id provider="uniprot">134558</id>
1788                         <scientific_name>Ministeria vibrans</scientific_name>
1789                         <rank>species</rank>
1790                       </taxonomy>
1791                     </clade>
1792                   </clade>
1793                 </clade>
1794               </clade>
1795               <clade>
1796                 <taxonomy>
1797                   <scientific_name>Holomycota</scientific_name>
1798                   <synonym>Nucletmycea</synonym>
1799                 </taxonomy>
1800                 <clade>
1801                   <taxonomy>
1802                     <id provider="uniprot">4751</id>
1803                     <scientific_name>Fungi</scientific_name>
1804                     <rank>kingdom</rank>
1805                   </taxonomy>
1806                   <clade>
1807                     <name>Dikarya &amp; Mucoromycotina &amp; Kickxellomycotina &amp; Blastocladiomycota &amp; Chytridiomycota &amp; Neocallimastigomycota</name>
1808                     <clade>
1809                       <name>Dikarya &amp; Mucoromycotina &amp; Kickxellomycotina &amp; Blastocladiomycota &amp; Chytridiomycota</name>
1810                       <clade>
1811                         <name>Dikarya &amp; Mucoromycotina &amp; Kickxellomycotina &amp; Blastocladiomycota</name>
1812                         <clade>
1813                           <name>Dikarya &amp; Mucoromycotina &amp; Kickxellomycotina</name>
1814                           <clade>
1815                             <name>Dikarya &amp; Mucoromycotina</name>
1816                             <clade>
1817                               <taxonomy>
1818                                 <id provider="uniprot">451864</id>
1819                                 <scientific_name>Dikarya</scientific_name>
1820                                 <rank>subkingdom</rank>
1821                               </taxonomy>
1822                               <reference doi="10.1038/nature05110">
1823                               </reference>
1824                               <reference>
1825                               </reference>
1826                               <clade>
1827                                 <taxonomy>
1828                                   <id provider="uniprot">4890</id>
1829                                   <scientific_name>Ascomycota</scientific_name>
1830                                   <rank>phylum</rank>
1831                                 </taxonomy>
1832                                 <clade>
1833                                   <name>Pezizomycotina_Saccharomycetales</name>
1834                                   <clade>
1835                                     <taxonomy>
1836                                       <id provider="uniprot">147538</id>
1837                                       <scientific_name>Pezizomycotina</scientific_name>
1838                                       <synonym>Euascomycota</synonym>
1839                                       <rank>subphylum</rank>
1840                                     </taxonomy>
1841                                     <reference doi="0.3852/mycologia.98.6.1018">
1842                                       <desc>A five-gene phylogeny of Pezizomycotina</desc>
1843                                     </reference>
1844                                     <reference>
1845                                     </reference>
1846                                     <clade>
1847                                       <taxonomy>
1848                                         <id provider="uniprot">716546</id>
1849                                         <scientific_name>Leotiomyceta</scientific_name>
1850                                       </taxonomy>
1851                                       <clade>
1852                                         <name>Sordariomyceta &amp; Dothideomycetes &amp; Trichocomaceae &amp; Lecanoromycetes</name>
1853                                         <clade>
1854                                           <name>Sordariomyceta &amp; Dothideomycetes &amp; Lecanoromycetes</name>
1855                                           <clade>
1856                                             <name>Sordariomyceta &amp; Lecanoromycetes</name>
1857                                             <clade>
1858                                               <taxonomy>
1859                                                 <id provider="uniprot">715989</id>
1860                                                 <scientific_name>Sordariomyceta</scientific_name>
1861                                               </taxonomy>
1862                                               <clade>
1863                                                 <taxonomy>
1864                                                   <id provider="uniprot">147550</id>
1865                                                   <scientific_name>Sordariomycetes</scientific_name>
1866                                                   <rank>class</rank>
1867                                                 </taxonomy>
1868                                                 <clade>
1869                                                   <name>Magnaporthales &amp; Hypocreales</name>
1870                                                   <clade>
1871                                                     <taxonomy>
1872                                                       <id provider="uniprot">5125</id>
1873                                                       <scientific_name>Hypocreales</scientific_name>
1874                                                       <rank>order</rank>
1875                                                     </taxonomy>
1876                                                     <clade>
1877                                                       <name>ACRALC</name>
1878                                                       <taxonomy>
1879                                                         <id provider="uniprot">398408</id>
1880                                                         <scientific_name>Acremonium alcalophilum</scientific_name>
1881                                                         <rank>species</rank>
1882                                                         <uri>http://genome.jgi-psf.org/public/Acral1_c3a/Acral1.jpg</uri>
1883                                                       </taxonomy>
1884                                                     </clade>
1885                                                     <clade>
1886                                                       <name>GIBZE</name>
1887                                                       <taxonomy>
1888                                                         <id provider="uniprot">5518</id>
1889                                                         <code>GIBZE</code>
1890                                                         <scientific_name>Gibberella zeae</scientific_name>
1891                                                         <common_name>Wheat head blight fungus</common_name>
1892                                                         <synonym>Fusarium graminearum</synonym>
1893                                                         <rank>species</rank>
1894                                                       </taxonomy>
1895                                                     </clade>
1896                                                     <clade>
1897                                                       <name>TRIVE</name>
1898                                                       <taxonomy>
1899                                                         <id provider="uniprot">29875</id>
1900                                                         <code>TRIVE</code>
1901                                                         <scientific_name>Trichoderma virens</scientific_name>
1902                                                         <common_name>Gliocladium virens</common_name>
1903                                                         <synonym>Trichoderma virens</synonym>
1904                                                         <rank>species</rank>
1905                                                       </taxonomy>
1906                                                     </clade>
1907                                                   </clade>
1908                                                   <clade>
1909                                                     <name>MAGGR</name>
1910                                                     <taxonomy>
1911                                                       <id provider="uniprot">148305</id>
1912                                                       <code>MAGGR</code>
1913                                                       <scientific_name>Magnaporthe grisea</scientific_name>
1914                                                       <common_name>Rice blast fungus</common_name>
1915                                                       <synonym>Pyricularia grisea</synonym>
1916                                                       <rank>species</rank>
1917                                                     </taxonomy>
1918                                                   </clade>
1919                                                 </clade>
1920                                                 <clade>
1921                                                   <taxonomy>
1922                                                     <id provider="uniprot">5139</id>
1923                                                     <scientific_name>Sordariales</scientific_name>
1924                                                     <rank>order</rank>
1925                                                   </taxonomy>
1926                                                   <clade>
1927                                                     <taxonomy>
1928                                                       <id provider="uniprot">35718</id>
1929                                                       <scientific_name>Chaetomiaceae</scientific_name>
1930                                                       <rank>family</rank>
1931                                                     </taxonomy>
1932                                                     <clade>
1933                                                       <taxonomy>
1934                                                         <id provider="uniprot">35719</id>
1935                                                         <scientific_name>Thielavia</scientific_name>
1936                                                         <rank>genus</rank>
1937                                                       </taxonomy>
1938                                                       <clade>
1939                                                         <name>MYCTHE</name>
1940                                                         <taxonomy>
1941                                                           <id provider="uniprot">573728</id>
1942                                                           <scientific_name>Myceliophthora thermophila</scientific_name>
1943                                                           <authority>(Apinis) Oorschot 1977</authority>
1944                                                           <synonym>Sporotrichum thermophilum</synonym>
1945                                                           <synonym>anamorph of Thielavia heterothallica</synonym>
1946                                                           <rank>species</rank>
1947                                                           <uri>http://genome.jgi-psf.org/public/Spoth2/Spoth0.jpg</uri>
1948                                                         </taxonomy>
1949                                                       </clade>
1950                                                       <clade>
1951                                                         <name>THITER</name>
1952                                                         <taxonomy>
1953                                                           <id provider="eol">193532</id>
1954                                                           <scientific_name>Thielavia terrestris</scientific_name>
1955                                                           <authority>Malloch &amp; Cain 1972</authority>
1956                                                           <synonym>Acremonium alabamense</synonym>
1957                                                           <rank>species</rank>
1958                                                           <uri>http://genome.jgi-psf.org/public/Thite2/Thite1.jpg</uri>
1959                                                         </taxonomy>
1960                                                       </clade>
1961                                                     </clade>
1962                                                     <clade>
1963                                                       <name>CHAGB</name>
1964                                                       <taxonomy>
1965                                                         <id provider="eol">1029505</id>
1966                                                         <code>CHAGB</code>
1967                                                         <scientific_name>Chaetomium globosum</scientific_name>
1968                                                         <authority>Kunze 1817</authority>
1969                                                         <common_name>Soil fungus</common_name>
1970                                                         <rank>species</rank>
1971                                                       </taxonomy>
1972                                                     </clade>
1973                                                   </clade>
1974                                                   <clade>
1975                                                     <name>NEUCR</name>
1976                                                     <taxonomy>
1977                                                       <id provider="uniprot">5141</id>
1978                                                       <code>NEUCR</code>
1979                                                       <scientific_name>Neurospora crassa</scientific_name>
1980                                                       <rank>species</rank>
1981                                                     </taxonomy>
1982                                                   </clade>
1983                                                 </clade>
1984                                               </clade>
1985                                               <clade>
1986                                                 <taxonomy>
1987                                                   <id provider="uniprot">147548</id>
1988                                                   <scientific_name>Leotiomycetes</scientific_name>
1989                                                   <rank>class</rank>
1990                                                 </taxonomy>
1991                                                 <clade>
1992                                                   <taxonomy>
1993                                                     <id provider="uniprot">28983</id>
1994                                                     <scientific_name>Sclerotiniaceae</scientific_name>
1995                                                     <rank>family</rank>
1996                                                   </taxonomy>
1997                                                   <clade>
1998                                                     <taxonomy>
1999                                                       <id provider="uniprot">40559</id>
2000                                                       <code>BOTFU</code>
2001                                                       <scientific_name>Botryotinia fuckeliana</scientific_name>
2002                                                       <common_name>Noble rot fungus</common_name>
2003                                                       <synonym>Botrytis cinerea</synonym>
2004                                                       <rank>species</rank>
2005                                                     </taxonomy>
2006                                                   </clade>
2007                                                   <clade>
2008                                                     <taxonomy>
2009                                                       <id provider="uniprot">5180</id>
2010                                                       <code>SCLSC</code>
2011                                                       <scientific_name>Sclerotinia sclerotiorum</scientific_name>
2012                                                       <common_name>White mold</common_name>
2013                                                       <synonym>Whetzelinia sclerotiorum</synonym>
2014                                                       <rank>species</rank>
2015                                                     </taxonomy>
2016                                                   </clade>
2017                                                 </clade>
2018                                                 <clade>
2019                                                   <name>OIDMAI</name>
2020                                                   <taxonomy>
2021                                                     <id provider="uniprot">78148</id>
2022                                                     <scientific_name>Oidiodendron maius</scientific_name>
2023                                                     <rank>species</rank>
2024                                                   </taxonomy>
2025                                                 </clade>
2026                                               </clade>
2027                                             </clade>
2028                                             <clade>
2029                                               <taxonomy>
2030                                                 <id provider="uniprot">388435</id>
2031                                                 <scientific_name>Lecanoromycetidae</scientific_name>
2032                                                 <rank>subclass</rank>
2033                                               </taxonomy>
2034                                               <clade>
2035                                                 <name>CLAGRA</name>
2036                                                 <taxonomy>
2037                                                   <id provider="uniprot">27339</id>
2038                                                   <scientific_name>Cladonia grayi</scientific_name>
2039                                                   <synonym>Cladonia grayi Merr</synonym>
2040                                                   <rank>species</rank>
2041                                                   <uri>http://upload.wikimedia.org/wikipedia/commons/b/b6/Cladonia_grayi-11.jpg</uri>
2042                                                 </taxonomy>
2043                                               </clade>
2044                                               <clade>
2045                                                 <name>XANPAR</name>
2046                                                 <taxonomy>
2047                                                   <id provider="uniprot">107463</id>
2048                                                   <scientific_name>Xanthoria parietina</scientific_name>
2049                                                   <rank>species</rank>
2050                                                   <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/7/70/Xanthoria_parietina_%2806_03_31%29.jpg/800px-Xanthoria_parietina_%2806_03_31%29.jpg</uri>
2051                                                 </taxonomy>
2052                                               </clade>
2053                                             </clade>
2054                                           </clade>
2055                                           <clade>
2056                                             <taxonomy>
2057                                               <id provider="uniprot">147541</id>
2058                                               <scientific_name>Dothideomycetes</scientific_name>
2059                                               <rank>class</rank>
2060                                             </taxonomy>
2061                                             <reference doi="10.3114/sim.2009.64.01">
2062                                               <desc>A class-wide phylogenetic assessment of Dothideomycetes</desc>
2063                                             </reference>
2064                                             <clade>
2065                                               <taxonomy>
2066                                                 <id provider="uniprot">134362</id>
2067                                                 <scientific_name>Capnodiales</scientific_name>
2068                                                 <rank>order</rank>
2069                                               </taxonomy>
2070                                               <clade>
2071                                                 <taxonomy>
2072                                                   <id provider="uniprot">41254</id>
2073                                                   <scientific_name>Mycosphaerella</scientific_name>
2074                                                   <rank>genus</rank>
2075                                                 </taxonomy>
2076                                                 <clade>
2077                                                   <name>MYCFI</name>
2078                                                   <taxonomy>
2079                                                     <id provider="uniprot">83344</id>
2080                                                     <scientific_name>Mycosphaerella fijiensis</scientific_name>
2081                                                     <rank>species</rank>
2082                                                   </taxonomy>
2083                                                 </clade>
2084                                                 <clade>
2085                                                   <name>MYCGR</name>
2086                                                   <taxonomy>
2087                                                     <id provider="uniprot">54734</id>
2088                                                     <code>MYCGR</code>
2089                                                     <scientific_name>Mycosphaerella graminicola</scientific_name>
2090                                                     <common_name>Speckled leaf blotch fungus</common_name>
2091                                                     <synonym>Septoria tritici</synonym>
2092                                                     <rank>species</rank>
2093                                                   </taxonomy>
2094                                                 </clade>
2095                                                 <clade>
2096                                                   <name>MYCPJ</name>
2097                                                   <taxonomy>
2098                                                     <id provider="uniprot">64363</id>
2099                                                     <code>MYCPJ</code>
2100                                                     <scientific_name>Mycosphaerella pini</scientific_name>
2101                                                     <common_name>Red band needle blight disease fungus</common_name>
2102                                                     <synonym>Dothistroma septosporum</synonym>
2103                                                     <synonym>Dothistroma pini</synonym>
2104                                                     <rank>species</rank>
2105                                                   </taxonomy>
2106                                                 </clade>
2107                                                 <clade>
2108                                                   <name>MYCPOP</name>
2109                                                   <taxonomy>
2110                                                     <id provider="uniprot">85929</id>
2111                                                     <scientific_name>Mycosphaerella populorum</scientific_name>
2112                                                     <synonym>Septoria musiva</synonym>
2113                                                     <rank>species</rank>
2114                                                   </taxonomy>
2115                                                 </clade>
2116                                               </clade>
2117                                               <clade>
2118                                                 <name>BAUCOM</name>
2119                                                 <taxonomy>
2120                                                   <id provider="uniprot">430998</id>
2121                                                   <scientific_name>Baudoinia compniacensis</scientific_name>
2122                                                   <rank>species</rank>
2123                                                   <uri>http://www.diark.org/img/species_pict/Baudoinia_compniacensis</uri>
2124                                                 </taxonomy>
2125                                               </clade>
2126                                             </clade>
2127                                             <clade>
2128                                               <taxonomy>
2129                                                 <id provider="uniprot">715340</id>
2130                                                 <scientific_name>Pleosporineae</scientific_name>
2131                                                 <rank>suborder</rank>
2132                                               </taxonomy>
2133                                               <clade>
2134                                                 <taxonomy>
2135                                                   <id provider="uniprot">28556</id>
2136                                                   <scientific_name>Pleosporaceae</scientific_name>
2137                                                   <rank>family</rank>
2138                                                 </taxonomy>
2139                                                 <clade>
2140                                                   <name>Cochliobolus &amp; Setosphaeria</name>
2141                                                   <clade>
2142                                                     <taxonomy>
2143                                                       <id provider="uniprot">5015</id>
2144                                                       <scientific_name>Cochliobolus</scientific_name>
2145                                                       <rank>genus</rank>
2146                                                     </taxonomy>
2147                                                     <clade>
2148                                                       <name>COCHE</name>
2149                                                       <taxonomy>
2150                                                         <id provider="uniprot">5016</id>
2151                                                         <code>COCHE</code>
2152                                                         <scientific_name>Cochliobolus heterostrophus</scientific_name>
2153                                                         <synonym>Drechslera maydis</synonym>
2154                                                         <rank>species</rank>
2155                                                       </taxonomy>
2156                                                     </clade>
2157                                                     <clade>
2158                                                       <taxonomy>
2159                                                         <id provider="uniprot">45130</id>
2160                                                         <code>COCSA</code>
2161                                                         <scientific_name>Cochliobolus sativus</scientific_name>
2162                                                         <synonym>Bipolaris sorokiniana</synonym>
2163                                                         <rank>species</rank>
2164                                                         <uri>http://www.plantmanagementnetwork.org/pub/php/diagnosticguide/2003/rootrot/image/mathre6sm.jpg</uri>
2165                                                       </taxonomy>
2166                                                     </clade>
2167                                                   </clade>
2168                                                   <clade>
2169                                                     <taxonomy>
2170                                                       <id provider="uniprot">93612</id>
2171                                                       <code>SETTU</code>
2172                                                       <scientific_name>Setosphaeria turcica</scientific_name>
2173                                                       <authority>(Luttr.) K.J. Leonard &amp; Suggs, (1974)</authority>
2174                                                       <common_name>Northern corn leaf blight disease fungus</common_name>
2175                                                       <synonym>Exserohilum turcicum</synonym>
2176                                                       <synonym>Helminthosporium turcicum</synonym>
2177                                                       <rank>species</rank>
2178                                                       <uri>http://www.pflanzenkrankheiten.ch/diseases/STU/figures_STU/HTU_Mais_Mik_7_k.jpg</uri>
2179                                                       <uri>http://www.pflanzenkrankheiten.ch/diseases/STU/figures_STU/Exserohilum_turcicum_001_k.jpg</uri>
2180                                                     </taxonomy>
2181                                                   </clade>
2182                                                 </clade>
2183                                                 <clade>
2184                                                   <name>PYRTR</name>
2185                                                   <taxonomy>
2186                                                     <id provider="uniprot">426418</id>
2187                                                     <code>PYRTR</code>
2188                                                     <scientific_name>Pyrenophora tritici-repentis (strain Pt-1C-BFP)</scientific_name>
2189                                                     <common_name>Wheat tan spot fungus</common_name>
2190                                                     <synonym>Drechslera tritici-repentis</synonym>
2191                                                   </taxonomy>
2192                                                 </clade>
2193                                               </clade>
2194                                               <clade>
2195                                                 <name>PHANO</name>
2196                                                 <taxonomy>
2197                                                   <id provider="uniprot">13684</id>
2198                                                   <code>PHANO</code>
2199                                                   <scientific_name>Phaeosphaeria nodorum</scientific_name>
2200                                                   <common_name>Glume blotch fungus</common_name>
2201                                                   <synonym>Septoria nodorum</synonym>
2202                                                   <rank>species</rank>
2203                                                 </taxonomy>
2204                                               </clade>
2205                                             </clade>
2206                                           </clade>
2207                                         </clade>
2208                                         <clade>
2209                                           <taxonomy>
2210                                             <id provider="uniprot">28568</id>
2211                                             <scientific_name>Trichocomaceae</scientific_name>
2212                                             <rank>family</rank>
2213                                           </taxonomy>
2214                                           <clade>
2215                                             <name>Neosartorya_Emericella</name>
2216                                             <clade>
2217                                               <name>EMENI</name>
2218                                               <taxonomy>
2219                                                 <id provider="eol">195546</id>
2220                                                 <code>EMENI</code>
2221                                                 <scientific_name>Emericella nidulans</scientific_name>
2222                                                 <authority>Vuill. 1927</authority>
2223                                                 <synonym>Aspergillus nidulans</synonym>
2224                                                 <rank>species</rank>
2225                                               </taxonomy>
2226                                             </clade>
2227                                             <clade>
2228                                               <name>NEOFI</name>
2229                                               <taxonomy>
2230                                                 <id provider="uniprot">331117</id>
2231                                                 <code>NEOFI</code>
2232                                                 <scientific_name>Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181)</scientific_name>
2233                                                 <synonym>Aspergillus fischerianus</synonym>
2234                                               </taxonomy>
2235                                             </clade>
2236                                           </clade>
2237                                           <clade>
2238                                             <taxonomy>
2239                                               <id provider="uniprot">5052</id>
2240                                               <scientific_name>Aspergillus</scientific_name>
2241                                               <rank>genus</rank>
2242                                             </taxonomy>
2243                                             <clade>
2244                                               <taxonomy>
2245                                                 <scientific_name>Aspergillus flavus</scientific_name>
2246                                               </taxonomy>
2247                                               <clade>
2248                                                 <taxonomy>
2249                                                   <id provider="uniprot">5059</id>
2250                                                   <code>ASPFL</code>
2251                                                   <scientific_name>Aspergillus flavus</scientific_name>
2252                                                   <authority>Link 1809</authority>
2253                                                   <synonym>Petromyces flavus</synonym>
2254                                                   <rank>species</rank>
2255                                                   <uri>http://www.schoolproject2.ewebsite.com/img/original/21/aspergillus-flavus.jpg</uri>
2256                                                 </taxonomy>
2257                                               </clade>
2258                                               <clade>
2259                                                 <taxonomy>
2260                                                   <id provider="uniprot">332952</id>
2261                                                   <code>ASPFN</code>
2262                                                   <scientific_name>Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC 167)</scientific_name>
2263                                                   <synonym>Aspergillus flavus NRRL3357</synonym>
2264                                                 </taxonomy>
2265                                               </clade>
2266                                             </clade>
2267                                             <clade>
2268                                               <name>ASPNG</name>
2269                                               <taxonomy>
2270                                                 <id provider="uniprot">5061</id>
2271                                                 <code>ASPNG</code>
2272                                                 <scientific_name>Aspergillus niger</scientific_name>
2273                                                 <rank>species</rank>
2274                                               </taxonomy>
2275                                             </clade>
2276                                           </clade>
2277                                         </clade>
2278                                       </clade>
2279                                       <clade>
2280                                         <taxonomy>
2281                                           <id provider="uniprot">33183</id>
2282                                           <scientific_name>Onygenales</scientific_name>
2283                                           <rank>order</rank>
2284                                         </taxonomy>
2285                                         <clade>
2286                                           <name>COCIM</name>
2287                                           <taxonomy>
2288                                             <id provider="uniprot">5501</id>
2289                                             <code>COCIM</code>
2290                                             <scientific_name>Coccidioides immitis</scientific_name>
2291                                             <common_name>Valley fever fungus</common_name>
2292                                             <rank>species</rank>
2293                                           </taxonomy>
2294                                         </clade>
2295                                         <clade>
2296                                           <name>UNCRE</name>
2297                                           <taxonomy>
2298                                             <id provider="uniprot">336963</id>
2299                                             <code>UNCRE</code>
2300                                             <scientific_name>Uncinocarpus reesii (strain UAMH 1704)</scientific_name>
2301                                           </taxonomy>
2302                                         </clade>
2303                                       </clade>
2304                                     </clade>
2305                                     <clade>
2306                                       <taxonomy>
2307                                         <id provider="uniprot">656061</id>
2308                                         <code>TUBMM</code>
2309                                         <scientific_name>Tuber melanosporum (strain Mel28)</scientific_name>
2310                                         <common_name>Perigord black truffle</common_name>
2311                                         <synonym>Tuber melanosporum Mel28</synonym>
2312                                         <uri>http://www.gmvmonza.org/images%20parco/Tuber%20melanosporum%20p106.jpg</uri>
2313                                       </taxonomy>
2314                                     </clade>
2315                                   </clade>
2316                                   <clade>
2317                                     <taxonomy>
2318                                       <id provider="uniprot">4892</id>
2319                                       <scientific_name>Saccharomycetales</scientific_name>
2320                                       <common_name>budding yeasts</common_name>
2321                                       <rank>order</rank>
2322                                     </taxonomy>
2323                                     <clade>
2324                                       <name>Candida &amp; Debaryomyces &amp; Saccharomycetacea</name>
2325                                       <clade>
2326                                         <taxonomy>
2327                                           <id provider="uniprot">4893</id>
2328                                           <scientific_name>Saccharomycetaceae</scientific_name>
2329                                           <rank>family</rank>
2330                                         </taxonomy>
2331                                         <clade>
2332                                           <name>Saccharomyces_Pichia</name>
2333                                           <clade>
2334                                             <name>Saccharomyces</name>
2335                                             <clade>
2336                                               <name>SACCA</name>
2337                                               <taxonomy>
2338                                                 <id provider="uniprot">27288</id>
2339                                                 <code>SACCA</code>
2340                                                 <scientific_name>Saccharomyces castellii</scientific_name>
2341                                                 <common_name>Yeast</common_name>
2342                                                 <synonym>Saccharomyces castellii</synonym>
2343                                                 <rank>species</rank>
2344                                               </taxonomy>
2345                                             </clade>
2346                                             <clade>
2347                                               <name>YEAST</name>
2348                                               <taxonomy>
2349                                                 <id provider="uniprot">4932</id>
2350                                                 <code>YEAST</code>
2351                                                 <scientific_name>Saccharomyces cerevisiae</scientific_name>
2352                                                 <common_name>Baker&apos;s yeast</common_name>
2353                                                 <rank>species</rank>
2354                                               </taxonomy>
2355                                             </clade>
2356                                           </clade>
2357                                           <clade>
2358                                             <name>PICAN</name>
2359                                             <taxonomy>
2360                                               <id provider="uniprot">4905</id>
2361                                               <code>PICAN</code>
2362                                               <scientific_name>Pichia angusta</scientific_name>
2363                                               <common_name>Yeast</common_name>
2364                                               <synonym>Hansenula polymorpha</synonym>
2365                                               <rank>species</rank>
2366                                             </taxonomy>
2367                                           </clade>
2368                                         </clade>
2369                                         <clade>
2370                                           <name>Kluyveromyces &amp; Ashbya</name>
2371                                           <clade>
2372                                             <name>Kluyveromyces</name>
2373                                             <clade>
2374                                               <name>KLULA</name>
2375                                               <taxonomy>
2376                                                 <id provider="uniprot">28985</id>
2377                                                 <code>KLULA</code>
2378                                                 <scientific_name>Kluyveromyces lactis</scientific_name>
2379                                                 <common_name>Yeast</common_name>
2380                                                 <synonym>Candida sphaerica</synonym>
2381                                                 <rank>species</rank>
2382                                               </taxonomy>
2383                                             </clade>
2384                                             <clade>
2385                                               <name>KLUWA</name>
2386                                               <taxonomy>
2387                                                 <id provider="uniprot">4914</id>
2388                                                 <code>KLUWA</code>
2389                                                 <scientific_name>Kluyveromyces waltii</scientific_name>
2390                                                 <common_name>Yeast</common_name>
2391                                                 <rank>species</rank>
2392                                               </taxonomy>
2393                                             </clade>
2394                                           </clade>
2395                                           <clade>
2396                                             <name>ASHGO</name>
2397                                             <taxonomy>
2398                                               <id provider="uniprot">33169</id>
2399                                               <code>ASHGO</code>
2400                                               <scientific_name>Ashbya gossypii</scientific_name>
2401                                               <common_name>Yeast</common_name>
2402                                               <synonym>Eremothecium gossypii</synonym>
2403                                               <rank>species</rank>
2404                                             </taxonomy>
2405                                           </clade>
2406                                         </clade>
2407                                       </clade>
2408                                       <clade>
2409                                         <name>Candida &amp; Debaryomyces</name>
2410                                         <clade>
2411                                           <taxonomy>
2412                                             <id provider="uniprot">5475</id>
2413                                             <scientific_name>Candida</scientific_name>
2414                                             <rank>genus</rank>
2415                                           </taxonomy>
2416                                           <clade>
2417                                             <name>CANAL</name>
2418                                             <taxonomy>
2419                                               <id provider="uniprot">5476</id>
2420                                               <code>CANAL</code>
2421                                               <scientific_name>Candida albicans</scientific_name>
2422                                               <common_name>Yeast</common_name>
2423                                               <rank>species</rank>
2424                                             </taxonomy>
2425                                           </clade>
2426                                           <clade>
2427                                             <name>CANTR</name>
2428                                             <taxonomy>
2429                                               <id provider="uniprot">5482</id>
2430                                               <code>CANTR</code>
2431                                               <scientific_name>Candida tropicalis</scientific_name>
2432                                               <common_name>Yeast</common_name>
2433                                               <rank>species</rank>
2434                                             </taxonomy>
2435                                           </clade>
2436                                         </clade>
2437                                         <clade>
2438                                           <name>DEBHA</name>
2439                                           <taxonomy>
2440                                             <id provider="uniprot">4959</id>
2441                                             <code>DEBHA</code>
2442                                             <scientific_name>Debaryomyces hansenii</scientific_name>
2443                                             <common_name>Yeast</common_name>
2444                                             <synonym>Torulaspora hansenii</synonym>
2445                                             <rank>species</rank>
2446                                           </taxonomy>
2447                                         </clade>
2448                                       </clade>
2449                                     </clade>
2450                                     <clade>
2451                                       <name>YARLI</name>
2452                                       <taxonomy>
2453                                         <id provider="uniprot">4952</id>
2454                                         <code>YARLI</code>
2455                                         <scientific_name>Yarrowia lipolytica</scientific_name>
2456                                         <synonym>Candida lipolytica</synonym>
2457                                         <rank>species</rank>
2458                                       </taxonomy>
2459                                     </clade>
2460                                   </clade>
2461                                 </clade>
2462                                 <clade>
2463                                   <taxonomy>
2464                                     <id provider="uniprot">451866</id>
2465                                     <scientific_name>Taphrinomycotina</scientific_name>
2466                                     <rank>subphylum</rank>
2467                                   </taxonomy>
2468                                   <clade>
2469                                     <name>Pneumocystidomycetes &amp; Schizosaccharomycetes</name>
2470                                     <clade>
2471                                       <taxonomy>
2472                                         <id provider="uniprot">4895</id>
2473                                         <scientific_name>Schizosaccharomyces</scientific_name>
2474                                         <rank>genus</rank>
2475                                       </taxonomy>
2476                                       <clade>
2477                                         <name>SCHJP</name>
2478                                         <taxonomy>
2479                                           <id provider="uniprot">4897</id>
2480                                           <code>SCHJP</code>
2481                                           <scientific_name>Schizosaccharomyces japonicus</scientific_name>
2482                                           <common_name>Fission yeast</common_name>
2483                                           <rank>species</rank>
2484                                         </taxonomy>
2485                                       </clade>
2486                                       <clade>
2487                                         <taxonomy>
2488                                           <id provider="uniprot">4899</id>
2489                                           <code>SCHOT</code>
2490                                           <scientific_name>Schizosaccharomyces octosporus</scientific_name>
2491                                           <common_name>Fission yeast</common_name>
2492                                           <rank>species</rank>
2493                                           <uri>http://www.dipbot.unict.it/sistematica/Immagini/12002.JPG</uri>
2494                                         </taxonomy>
2495                                       </clade>
2496                                       <clade>
2497                                         <name>SCHPO</name>
2498                                         <taxonomy>
2499                                           <id provider="uniprot">4896</id>
2500                                           <code>SCHPO</code>
2501                                           <scientific_name>Schizosaccharomyces pombe</scientific_name>
2502                                           <common_name>Fission yeast</common_name>
2503                                           <rank>species</rank>
2504                                         </taxonomy>
2505                                       </clade>
2506                                     </clade>
2507                                     <clade>
2508                                       <name>PNECA</name>
2509                                       <taxonomy>
2510                                         <id provider="uniprot">4754</id>
2511                                         <code>PNECA</code>
2512                                         <scientific_name>Pneumocystis carinii</scientific_name>
2513                                         <rank>species</rank>
2514                                       </taxonomy>
2515                                     </clade>
2516                                   </clade>
2517                                   <clade>
2518                                     <name>SAICOM</name>
2519                                     <taxonomy>
2520                                       <id provider="uniprot">5606</id>
2521                                       <scientific_name>Saitoella complicata</scientific_name>
2522                                       <rank>species</rank>
2523                                     </taxonomy>
2524                                   </clade>
2525                                 </clade>
2526                               </clade>
2527                               <clade>
2528                                 <taxonomy>
2529                                   <id provider="uniprot">5204</id>
2530                                   <scientific_name>Basidiomycota</scientific_name>
2531                                   <rank>phylum</rank>
2532                                 </taxonomy>
2533                                 <clade>
2534                                   <name>Agaricomycotina &amp; Ustilaginomycotina &amp; Pucciniomycotina</name>
2535                                   <clade>
2536                                     <name>Agaricomycotina &amp; Ustilaginomycotina</name>
2537                                     <clade>
2538                                       <taxonomy>
2539                                         <id provider="uniprot">5302</id>
2540                                         <scientific_name>Agaricomycotina</scientific_name>
2541                                       </taxonomy>
2542                                       <clade>
2543                                         <taxonomy>
2544                                           <id provider="uniprot">155619</id>
2545                                           <scientific_name>Homobasidiomycetes</scientific_name>
2546                                           <rank>class</rank>
2547                                         </taxonomy>
2548                                         <reference doi="10.1098/rspb.2002.2123">
2549                                           <desc>Evolution of complex fruiting–body morphologies in homobasidiomycetes</desc>
2550                                         </reference>
2551                                         <clade>
2552                                           <name>Agaricomycetidae &amp; Gloeophyllum &amp; Aphyllophorales</name>
2553                                           <clade>
2554                                             <name>Agaricomycetidae &amp; Gloeophyllum</name>
2555                                             <clade>
2556                                               <taxonomy>
2557                                                 <id provider="uniprot">452333</id>
2558                                                 <scientific_name>Agaricomycetidae</scientific_name>
2559                                                 <rank>subclass</rank>
2560                                               </taxonomy>
2561                                               <clade>
2562                                                 <name>Agaricales &amp; Boletales</name>
2563                                                 <clade>
2564                                                   <taxonomy>
2565                                                     <id provider="uniprot">5338</id>
2566                                                     <scientific_name>Agaricales</scientific_name>
2567                                                     <rank>order</rank>
2568                                                   </taxonomy>
2569                                                   <clade>
2570                                                     <name>Agaricus &amp; Coprinopsis &amp; Laccaria &amp; Pleurotus</name>
2571                                                     <clade>
2572                                                       <name>Agaricus &amp; Coprinopsis &amp; Laccaria</name>
2573                                                       <clade>
2574                                                         <name>Agaricus &amp; Coprinopsis</name>
2575                                                         <clade>
2576                                                           <name>AGABB</name>
2577                                                           <taxonomy>
2578                                                             <id provider="uniprot">192524</id>
2579                                                             <scientific_name>Agaricus bisporus var. burnettii</scientific_name>
2580                                                             <uri>http://www.mykoweb.com/CAF/photos/Agaricus_bisporus(fs-03).jpg</uri>
2581                                                           </taxonomy>
2582                                                         </clade>
2583                                                         <clade>
2584                                                           <name>COPCI</name>
2585                                                           <taxonomy>
2586                                                             <id provider="uniprot">5346</id>
2587                                                             <code>COPCI</code>
2588                                                             <scientific_name>Coprinopsis cinerea</scientific_name>
2589                                                             <common_name>Inky cap fungus</common_name>
2590                                                             <synonym>Hormographiella aspergillata</synonym>
2591                                                             <rank>species</rank>
2592                                                             <uri>http://upload.wikimedia.org/wikipedia/commons/e/e9/Coprinopsis.cinerea.-.lindsey.jpg</uri>
2593                                                           </taxonomy>
2594                                                         </clade>
2595                                                       </clade>
2596                                                       <clade>
2597                                                         <taxonomy>
2598                                                           <id provider="uniprot">29883</id>
2599                                                           <code>LACBI</code>
2600                                                           <scientific_name>Laccaria bicolor</scientific_name>
2601                                                           <common_name>Bicoloured deceiver</common_name>
2602                                                           <synonym>Laccaria laccata var. bicolor</synonym>
2603                                                           <rank>species</rank>
2604                                                           <uri>https://www.llnl.gov/news/newsreleases/2006/images/Laccaria_big.jpg</uri>
2605                                                         </taxonomy>
2606                                                       </clade>
2607                                                     </clade>
2608                                                     <clade>
2609                                                       <name>GYMLUX</name>
2610                                                       <taxonomy>
2611                                                         <id provider="uniprot">206324</id>
2612                                                         <scientific_name>Gymnopus luxurians</scientific_name>
2613                                                         <rank>species</rank>
2614                                                         <uri>http://www.mushroomexpert.com/images/kuo3/gymnopus_luxurians_02.jpg</uri>
2615                                                       </taxonomy>
2616                                                     </clade>
2617                                                   </clade>
2618                                                   <clade>
2619                                                     <name>PLEOS</name>
2620                                                     <taxonomy>
2621                                                       <id provider="uniprot">5322</id>
2622                                                       <code>PLEOS</code>
2623                                                       <scientific_name>Pleurotus ostreatus</scientific_name>
2624                                                       <common_name>Oyster mushroom</common_name>
2625                                                       <synonym>White-rot fungus</synonym>
2626                                                       <rank>species</rank>
2627                                                       <uri>http://botit.botany.wisc.edu/toms_fungi/images/post1.jpg</uri>
2628                                                     </taxonomy>
2629                                                   </clade>
2630                                                 </clade>
2631                                                 <clade>
2632                                                   <taxonomy>
2633                                                     <id provider="uniprot">68889</id>
2634                                                     <scientific_name>Boletales</scientific_name>
2635                                                     <synonym>Melanogastrales</synonym>
2636                                                     <synonym>Sclerodermatales</synonym>
2637                                                     <rank>order</rank>
2638                                                   </taxonomy>
2639                                                   <clade>
2640                                                     <taxonomy>
2641                                                       <id provider="uniprot">227334</id>
2642                                                       <scientific_name>Coniophorineae</scientific_name>
2643                                                       <rank>suborder</rank>
2644                                                     </taxonomy>
2645                                                     <clade>
2646                                                       <name>CONPUT</name>
2647                                                       <taxonomy>
2648                                                         <id provider="uniprot">80637</id>
2649                                                         <scientific_name>Coniophora puteana</scientific_name>
2650                                                         <authority>Schum. ex Fries</authority>
2651                                                         <common_name>cellar fungus</common_name>
2652                                                         <rank>species</rank>
2653                                                         <uri>http://genome.jgi-psf.org/public/Conpu1/P1240066_dp.jpg</uri>
2654                                                       </taxonomy>
2655                                                     </clade>
2656                                                     <clade>
2657                                                       <name>SERLAC</name>
2658                                                       <taxonomy>
2659                                                         <id provider="uniprot">85982</id>
2660                                                         <scientific_name>Serpula lacrymans</scientific_name>
2661                                                         <common_name>dry rot fungus</common_name>
2662                                                         <rank>species</rank>
2663                                                         <uri>http://www.biolib.cz/IMG/GAL/BIG/18135.jpg</uri>
2664                                                       </taxonomy>
2665                                                     </clade>
2666                                                   </clade>
2667                                                   <clade>
2668                                                     <name>HYDPIN</name>
2669                                                     <taxonomy>
2670                                                       <id provider="uniprot">388859</id>
2671                                                       <scientific_name>Hydnomerulius pinastri</scientific_name>
2672                                                       <common_name>Spiny dry rot fungus</common_name>
2673                                                       <rank>species</rank>
2674                                                       <uri>http://mycoweb-stv.narod.ru/fungi/Submitted/STV1/Hydnomerulius_pinastri_1_STV_20100913.jpg</uri>
2675                                                     </taxonomy>
2676                                                   </clade>
2677                                                 </clade>
2678                                               </clade>
2679                                               <clade>
2680                                                 <name>JAAARG</name>
2681                                                 <taxonomy>
2682                                                   <id provider="uniprot">202697</id>
2683                                                   <scientific_name>Jaapia argillacea</scientific_name>
2684                                                   <rank>species</rank>
2685                                                   <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/f/f4/Jaapia-argillacea.jpeg/640px-Jaapia-argillacea.jpeg</uri>
2686                                                 </taxonomy>
2687                                               </clade>
2688                                             </clade>
2689                                             <clade>
2690                                               <name>GLOTR</name>
2691                                               <taxonomy>
2692                                                 <id provider="uniprot">104355</id>
2693                                                 <code>GLOTR</code>
2694                                                 <scientific_name>Gloeophyllum trabeum</scientific_name>
2695                                                 <common_name>Brown rot fungus</common_name>
2696                                                 <rank>species</rank>
2697                                                 <uri>http://www.cbs.knaw.nl/images/Images_CBSFungi/CD/0001/0008/Gloeophyllum_trabeum.jpg</uri>
2698                                               </taxonomy>
2699                                             </clade>
2700                                           </clade>
2701                                           <clade>
2702                                             <taxonomy>
2703                                               <id provider="uniprot">5303</id>
2704                                               <scientific_name>Aphyllophorales</scientific_name>
2705                                               <authority>Gäum. (1926)</authority>
2706                                               <common_name>Shelf Fungi</common_name>
2707                                               <synonym>Polyporales</synonym>
2708                                               <rank>order</rank>
2709                                             </taxonomy>
2710                                             <clade>
2711                                               <taxonomy>
2712                                                 <id provider="uniprot">83233</id>
2713                                                 <scientific_name>Coriolaceae</scientific_name>
2714                                                 <rank>family</rank>
2715                                               </taxonomy>
2716                                               <reference doi="10.1017/S1477200005001623">
2717                                                 <desc>The phylogenetic distribution of resupinate forms across the major clades of mushroom-forming fungi (Homobasidiomycetes)</desc>
2718                                               </reference>
2719                                               <reference>
2720                                               </reference>
2721                                               <reference>
2722                                               </reference>
2723                                               <clade>
2724                                                 <name>Postia &amp; Fomitopsis &amp; Wolfiporia &amp; Trametes</name>
2725                                                 <clade>
2726                                                   <name>Antrodia clade</name>
2727                                                   <taxonomy>
2728                                                     <common_name>Antrodia clade</common_name>
2729                                                   </taxonomy>
2730                                                   <clade>
2731                                                     <name>FOMPIN</name>
2732                                                     <taxonomy>
2733                                                       <id provider="uniprot">40483</id>
2734                                                       <scientific_name>Fomitopsis pinicola</scientific_name>
2735                                                       <authority>P. Karst. 1881</authority>
2736                                                       <common_name>Red banded polypore</common_name>
2737                                                       <synonym>Fomes pinicola</synonym>
2738                                                       <rank>species</rank>
2739                                                       <uri>http://content6.eol.org/content/2009/06/07/01/48471_large.jpg</uri>
2740                                                     </taxonomy>
2741                                                   </clade>
2742                                                   <clade>
2743                                                     <name>POSPL</name>
2744                                                     <taxonomy>
2745                                                       <id provider="uniprot">104341</id>
2746                                                       <scientific_name>Postia placenta</scientific_name>
2747                                                       <rank>species</rank>
2748                                                       <uri>http://www.commanster.eu/commanster/Mushrooms/Polypore/SuPolypore/Postia.placenta.jpg</uri>
2749                                                     </taxonomy>
2750                                                   </clade>
2751                                                 </clade>
2752                                                 <clade>
2753                                                   <name>core polyporoid clade</name>
2754                                                   <taxonomy>
2755                                                     <common_name>core polyporoid clade</common_name>
2756                                                   </taxonomy>
2757                                                   <clade>
2758                                                     <name>TRAVE</name>
2759                                                     <taxonomy>
2760                                                       <id provider="uniprot">5325</id>
2761                                                       <code>TRAVE</code>
2762                                                       <scientific_name>Trametes versicolor</scientific_name>
2763                                                       <authority>(L.) Lloyd 1921</authority>
2764                                                       <common_name>White-rot fungus</common_name>
2765                                                       <synonym>Coriolus versicolor</synonym>
2766                                                       <synonym>Bjerkandera versicolor</synonym>
2767                                                       <rank>species</rank>
2768                                                       <uri>http://www.mykoweb.com/CAF/photos/Trametes_versicolor(bab-1).jpg</uri>
2769                                                       <uri>http://www.mykoweb.com/CAF/photos/Trametes_versicolor(bab-2).jpg</uri>
2770                                                       <uri>http://www.mykoweb.com/CAF/photos/Trametes_versicolor(mgw-01).jpg</uri>
2771                                                       <uri>http://genome.jgi-psf.org/public/Trave1/Trametes_versicolor.JPG</uri>
2772                                                     </taxonomy>
2773                                                   </clade>
2774                                                   <clade>
2775                                                     <name>WOLCOC</name>
2776                                                     <taxonomy>
2777                                                       <id provider="uniprot">81056</id>
2778                                                       <scientific_name>Wolfiporia cocos</scientific_name>
2779                                                       <rank>species</rank>
2780                                                       <uri>http://toolate.s7.coreserver.jp/kinoko/fungi/wolfiporia_cocos/w_cocos_002.jpg</uri>
2781                                                     </taxonomy>
2782                                                   </clade>
2783                                                 </clade>
2784                                               </clade>
2785                                               <clade>
2786                                                 <name>CERSU</name>
2787                                                 <taxonomy>
2788                                                   <id provider="uniprot">42742</id>
2789                                                   <code>CERSU</code>
2790                                                   <scientific_name>Ceriporiopsis subvermispora</scientific_name>
2791                                                   <rank>species</rank>
2792                                                 </taxonomy>
2793                                               </clade>
2794                                             </clade>
2795                                             <clade>
2796                                               <name>DICSQU</name>
2797                                               <taxonomy>
2798                                                 <id provider="uniprot">114155</id>
2799                                                 <scientific_name>Dichomitus squalens</scientific_name>
2800                                                 <authority>(P. Karst.) D. A. Reid 1965</authority>
2801                                                 <common_name>Red rot</common_name>
2802                                                 <synonym>Polyporus anceps</synonym>
2803                                                 <rank>species</rank>
2804                                                 <uri>http://www.fs.fed.us/r3/resources/health/field-guide/images/large/sds-f199-large.jpg</uri>
2805                                               </taxonomy>
2806                                             </clade>
2807                                           </clade>
2808                                         </clade>
2809                                         <clade>
2810                                           <name>HETAN</name>
2811                                           <taxonomy>
2812                                             <id provider="uniprot">13563</id>
2813                                             <code>HETAN</code>
2814                                             <scientific_name>Heterobasidion annosum</scientific_name>
2815                                             <common_name>Root rot fungus</common_name>
2816                                             <rank>species</rank>
2817                                           </taxonomy>
2818                                         </clade>
2819                                       </clade>
2820                                       <clade>
2821                                         <taxonomy>
2822                                           <id provider="uniprot">5215</id>
2823                                           <scientific_name>Tremellaceae</scientific_name>
2824                                           <rank>family</rank>
2825                                         </taxonomy>
2826                                         <clade>
2827                                           <name>CRYNE</name>
2828                                           <taxonomy>
2829                                             <id provider="uniprot">5207</id>
2830                                             <code>CRYNE</code>
2831                                             <scientific_name>Cryptococcus neoformans</scientific_name>
2832                                             <synonym>Filobasidiella neoformans</synonym>
2833                                             <rank>species</rank>
2834                                           </taxonomy>
2835                                         </clade>
2836                                         <clade>
2837                                           <name>TREME</name>
2838                                           <taxonomy>
2839                                             <id provider="eol">1029985</id>
2840                                             <code>TREME</code>
2841                                             <scientific_name>Tremella mesenterica</scientific_name>
2842                                             <authority>Pers. 1800</authority>
2843                                             <common_name>Jelly fungus</common_name>
2844                                             <synonym>Yellow Brain</synonym>
2845                                             <synonym>Tremella lutescens</synonym>
2846                                             <rank>species</rank>
2847                                           </taxonomy>
2848                                         </clade>
2849                                       </clade>
2850                                     </clade>
2851                                     <clade>
2852                                       <taxonomy>
2853                                         <id provider="uniprot">452284</id>
2854                                         <scientific_name>Ustilaginomycotina</scientific_name>
2855                                         <rank>subphylum</rank>
2856                                       </taxonomy>
2857                                       <clade>
2858                                         <taxonomy>
2859                                           <id provider="uniprot">425265</id>
2860                                           <code>MALGO</code>
2861                                           <scientific_name>Malassezia globosa (strain ATCC MYA-4612 / CBS 7966)</scientific_name>
2862                                           <common_name>Dandruff-associated fungus</common_name>
2863                                         </taxonomy>
2864                                       </clade>
2865                                       <clade>
2866                                         <name>USTMA</name>
2867                                         <taxonomy>
2868                                           <id provider="uniprot">5270</id>
2869                                           <code>USTMA</code>
2870                                           <scientific_name>Ustilago maydis</scientific_name>
2871                                           <common_name>Smut fungus</common_name>
2872                                           <rank>species</rank>
2873                                         </taxonomy>
2874                                       </clade>
2875                                     </clade>
2876                                   </clade>
2877                                   <clade>
2878                                     <taxonomy>
2879                                       <id provider="uniprot">29000</id>
2880                                       <scientific_name>Pucciniomycotina</scientific_name>
2881                                       <rank>subphylum</rank>
2882                                     </taxonomy>
2883                                     <clade>
2884                                       <taxonomy>
2885                                         <id provider="uniprot">5258</id>
2886                                         <scientific_name>Pucciniales</scientific_name>
2887                                         <common_name>rusts</common_name>
2888                                         <rank>order</rank>
2889                                       </taxonomy>
2890                                       <clade>
2891                                         <name>MELLP</name>
2892                                         <taxonomy>
2893                                           <id provider="eol">156696</id>
2894                                           <code>MELLP</code>
2895                                           <scientific_name>Melampsora laricis-populina</scientific_name>
2896                                           <authority>Kleb. 1902</authority>
2897                                           <synonym>Melampsora larici-populina</synonym>
2898                                           <synonym>Melampsora laricipopulina</synonym>
2899                                           <rank>species</rank>
2900                                         </taxonomy>
2901                                       </clade>
2902                                       <clade>
2903                                         <name>PUCGR</name>
2904                                         <taxonomy>
2905                                           <id provider="eol">1029947</id>
2906                                           <code>PUCGR</code>
2907                                           <scientific_name>Puccinia graminis</scientific_name>
2908                                           <authority>Pers. 1794</authority>
2909                                           <common_name>Black stem rust fungus</common_name>
2910                                           <synonym>Wheat rust</synonym>
2911                                           <rank>species</rank>
2912                                         </taxonomy>
2913                                       </clade>
2914                                     </clade>
2915                                     <clade>
2916                                       <taxonomy>
2917                                         <id provider="uniprot">89013</id>
2918                                         <scientific_name>mitosporic Sporidiobolales</scientific_name>
2919                                       </taxonomy>
2920                                       <clade>
2921                                         <name>RHOGR</name>
2922                                         <taxonomy>
2923                                           <id provider="uniprot">29898</id>
2924                                           <code>RHOGR</code>
2925                                           <scientific_name>Rhodotorula graminis</scientific_name>
2926                                           <common_name>Yeast</common_name>
2927                                           <rank>species</rank>
2928                                         </taxonomy>
2929                                       </clade>
2930                                       <clade>
2931                                         <name>SPORO</name>
2932                                         <taxonomy>
2933                                           <id provider="eol">1013696</id>
2934                                           <scientific_name>Sporobolomyces roseus</scientific_name>
2935                                           <authority>Kluyver &amp; C. B. Niel 1924</authority>
2936                                           <rank>species</rank>
2937                                         </taxonomy>
2938                                       </clade>
2939                                     </clade>
2940                                   </clade>
2941                                 </clade>
2942                                 <clade>
2943                                   <name>WALSE</name>
2944                                   <taxonomy>
2945                                     <id provider="uniprot">148960</id>
2946                                     <code>WALSE</code>
2947                                     <scientific_name>Wallemia sebi</scientific_name>
2948                                     <rank>species</rank>
2949                                   </taxonomy>
2950                                 </clade>
2951                               </clade>
2952                             </clade>
2953                             <clade>
2954                               <taxonomy>
2955                                 <id provider="uniprot">451507</id>
2956                                 <scientific_name>Mucoromycotina</scientific_name>
2957                                 <rank>subphylum</rank>
2958                               </taxonomy>
2959                               <clade>
2960                                 <taxonomy>
2961                                   <id provider="uniprot">34489</id>
2962                                   <scientific_name>Mucoraceae</scientific_name>
2963                                   <rank>family</rank>
2964                                 </taxonomy>
2965                                 <clade>
2966                                   <name>MUCCI</name>
2967                                   <taxonomy>
2968                                     <id provider="uniprot">36080</id>
2969                                     <code>MUCCI</code>
2970                                     <scientific_name>Mucor circinelloides</scientific_name>
2971                                     <synonym>Mucor griseo-roseus</synonym>
2972                                     <rank>species</rank>
2973                                   </taxonomy>
2974                                 </clade>
2975                                 <clade>
2976                                   <name>PHYBL</name>
2977                                   <taxonomy>
2978                                     <id provider="uniprot">4837</id>
2979                                     <code>PHYBL</code>
2980                                     <scientific_name>Phycomyces blakesleeanus</scientific_name>
2981                                     <rank>species</rank>
2982                                   </taxonomy>
2983                                 </clade>
2984                                 <clade>
2985                                   <name>RHIOR</name>
2986                                   <taxonomy>
2987                                     <id provider="uniprot">64495</id>
2988                                     <code>RHIOR</code>
2989                                     <scientific_name>Rhizopus oryzae</scientific_name>
2990                                     <synonym>Rhizopus delemar</synonym>
2991                                     <rank>species</rank>
2992                                   </taxonomy>
2993                                 </clade>
2994                               </clade>
2995                               <clade>
2996                                 <name>MORVER</name>
2997                                 <taxonomy>
2998                                   <id provider="uniprot">78898</id>
2999                                   <scientific_name>Mortierella verticillata</scientific_name>
3000                                   <rank>species</rank>
3001                                   <uri>http://www.diark.org/img/species_pict/Mortierella_verticillata</uri>
3002                                 </taxonomy>
3003                               </clade>
3004                             </clade>
3005                           </clade>
3006                           <clade>
3007                             <name>COEREV</name>
3008                             <taxonomy>
3009                               <id provider="uniprot">61392</id>
3010                               <scientific_name>Coemansia reversa</scientific_name>
3011                               <rank>species</rank>
3012                             </taxonomy>
3013                           </clade>
3014                         </clade>
3015                         <clade>
3016                           <taxonomy>
3017                             <id provider="uniprot">28583</id>
3018                             <code>ALLMA</code>
3019                             <scientific_name>Allomyces macrogynus</scientific_name>
3020                             <rank>species</rank>
3021                           </taxonomy>
3022                         </clade>
3023                       </clade>
3024                       <clade>
3025                         <taxonomy>
3026                           <id provider="uniprot">4761</id>
3027                           <scientific_name>Chytridiomycota</scientific_name>
3028                           <common_name>chytrids</common_name>
3029                           <synonym>Mastigomycotina</synonym>
3030                           <rank>phylum</rank>
3031                         </taxonomy>
3032                         <clade>
3033                           <taxonomy>
3034                             <id provider="uniprot">451435</id>
3035                             <scientific_name>Chytridiomycetes</scientific_name>
3036                             <rank>class</rank>
3037                           </taxonomy>
3038                           <clade>
3039                             <taxonomy>
3040                               <id provider="uniprot">109871</id>
3041                               <code>BATDE</code>
3042                               <scientific_name>Batrachochytrium dendrobatidis</scientific_name>
3043                               <common_name>Frog chytrid fungus</common_name>
3044                               <rank>species</rank>
3045                             </taxonomy>
3046                           </clade>
3047                           <clade>
3048                             <taxonomy>
3049                               <id provider="uniprot">109760</id>
3050                               <code>SPIPN</code>
3051                               <scientific_name>Spizellomyces punctatus</scientific_name>
3052                               <rank>species</rank>
3053                             </taxonomy>
3054                           </clade>
3055                         </clade>
3056                         <clade>
3057                           <name>GONPRO</name>
3058                           <taxonomy>
3059                             <id provider="eol">157984</id>
3060                             <scientific_name>Gonapodya prolifera</scientific_name>
3061                             <authority>A. Fisch. 1892</authority>
3062                             <rank>species</rank>
3063                             <uri>http://genome.jgi-psf.org/public/Ganpr1/Picture5.jpg</uri>
3064                           </taxonomy>
3065                         </clade>
3066                       </clade>
3067                     </clade>
3068                     <clade>
3069                       <name>PIRSPE</name>
3070                       <taxonomy>
3071                         <id provider="uniprot">73868</id>
3072                         <scientific_name>Piromyces sp. E2</scientific_name>
3073                         <rank>species</rank>
3074                         <uri>http://www.bsu.edu/classes/ruch/msa/barr/4-17.jpg</uri>
3075                       </taxonomy>
3076                     </clade>
3077                   </clade>
3078                   <clade>
3079                     <name>ENCCU</name>
3080                     <taxonomy>
3081                       <id provider="uniprot">6035</id>
3082                       <code>ENCCU</code>
3083                       <scientific_name>Encephalitozoon cuniculi</scientific_name>
3084                       <common_name>Microsporidian parasite</common_name>
3085                       <rank>species</rank>
3086                     </taxonomy>
3087                   </clade>
3088                 </clade>
3089                 <clade>
3090                   <name>Fonticula &amp; Nucleariidae</name>
3091                   <reference doi="10.1093/molbev/msp185">
3092                   </reference>
3093                   <clade>
3094                     <name>FONALB</name>
3095                     <taxonomy>
3096                       <id provider="uniprot">691883</id>
3097                       <scientific_name>Fonticula alba</scientific_name>
3098                       <synonym>Fonticula alba Worley, Raper &amp; Hohl. 1979</synonym>
3099                       <rank>species</rank>
3100                     </taxonomy>
3101                   </clade>
3102                   <clade>
3103                     <name>NUCSIM</name>
3104                     <taxonomy>
3105                       <id provider="uniprot">154970</id>
3106                       <scientific_name>Nuclearia simplex</scientific_name>
3107                       <rank>species</rank>
3108                     </taxonomy>
3109                   </clade>
3110                 </clade>
3111               </clade>
3112             </clade>
3113             <clade>
3114               <name>THETRA</name>
3115               <taxonomy>
3116                 <id provider="uniprot">529818</id>
3117                 <scientific_name>Thecamonas trahens</scientific_name>
3118                 <rank>species</rank>
3119               </taxonomy>
3120             </clade>
3121           </clade>
3122           <clade>
3123             <name>Amoebozoa</name>
3124             <taxonomy>
3125               <id provider="uniprot">554915</id>
3126               <scientific_name>Amoebozoa</scientific_name>
3127             </taxonomy>
3128             <clade>
3129               <name>Dictyostelium</name>
3130               <taxonomy>
3131                 <id provider="uniprot">5782</id>
3132                 <scientific_name>Dictyostelium</scientific_name>
3133                 <rank>genus</rank>
3134               </taxonomy>
3135               <clade>
3136                 <name>DICDI</name>
3137                 <taxonomy>
3138                   <id provider="uniprot">44689</id>
3139                   <code>DICDI</code>
3140                   <scientific_name>Dictyostelium discoideum</scientific_name>
3141                   <common_name>Slime mold</common_name>
3142                   <rank>species</rank>
3143                 </taxonomy>
3144               </clade>
3145               <clade>
3146                 <name>DICPU</name>
3147                 <taxonomy>
3148                   <id provider="uniprot">5786</id>
3149                   <code>DICPU</code>
3150                   <scientific_name>Dictyostelium purpureum</scientific_name>
3151                   <common_name>Slime mold</common_name>
3152                   <rank>species</rank>
3153                 </taxonomy>
3154               </clade>
3155             </clade>
3156             <clade>
3157               <name>ENTHI</name>
3158               <taxonomy>
3159                 <id provider="uniprot">5759</id>
3160                 <code>ENTHI</code>
3161                 <scientific_name>Entamoeba histolytica</scientific_name>
3162                 <rank>species</rank>
3163               </taxonomy>
3164             </clade>
3165           </clade>
3166         </clade>
3167         <clade>
3168           <name>Bikonta</name>
3169           <reference doi="10.1099/ijs.0.63216-0">
3170           </reference>
3171           <clade>
3172             <name>Corticata</name>
3173             <clade>
3174               <name>Archaeplastida</name>
3175               <clade>
3176                 <taxonomy>
3177                   <id provider="uniprot">33090</id>
3178                   <scientific_name>Viridiplantae</scientific_name>
3179                   <common_name>green plants</common_name>
3180                   <rank>kingdom</rank>
3181                 </taxonomy>
3182                 <clade>
3183                   <taxonomy>
3184                     <id provider="uniprot">3193</id>
3185                     <scientific_name>Embryophyta</scientific_name>
3186                   </taxonomy>
3187                   <clade>
3188                     <taxonomy>
3189                       <id provider="uniprot">58023</id>
3190                       <scientific_name>Tracheophyta</scientific_name>
3191                     </taxonomy>
3192                     <clade>
3193                       <taxonomy>
3194                         <id provider="uniprot">3398</id>
3195                         <scientific_name>Magnoliophyta</scientific_name>
3196                         <common_name>flowering plants</common_name>
3197                         <synonym>Angiospermae</synonym>
3198                       </taxonomy>
3199                       <clade>
3200                         <taxonomy>
3201                           <id provider="uniprot">71240</id>
3202                           <scientific_name>eudicotyledons</scientific_name>
3203                         </taxonomy>
3204                         <clade>
3205                           <taxonomy>
3206                             <id provider="uniprot">91827</id>
3207                             <scientific_name>core eudicotyledons</scientific_name>
3208                           </taxonomy>
3209                           <clade>
3210                             <taxonomy>
3211                               <id provider="uniprot">71275</id>
3212                               <scientific_name>rosids</scientific_name>
3213                               <rank>subclass</rank>
3214                             </taxonomy>
3215                             <clade>
3216                               <name>fabids &amp; malvids</name>
3217                               <clade>
3218                                 <taxonomy>
3219                                   <id provider="uniprot">91835</id>
3220                                   <scientific_name>fabids</scientific_name>
3221                                 </taxonomy>
3222                                 <clade>
3223                                   <name>Rosales &amp; Cucurbitales &amp; Fabales</name>
3224                                   <clade>
3225                                     <name>Rosales &amp; Cucurbitales</name>
3226                                     <clade>
3227                                       <taxonomy>
3228                                         <id provider="uniprot">3745</id>
3229                                         <scientific_name>Rosaceae</scientific_name>
3230                                         <rank>family</rank>
3231                                       </taxonomy>
3232                                       <clade>
3233                                         <name>FRAVE</name>
3234                                         <taxonomy>
3235                                           <id provider="uniprot">57918</id>
3236                                           <code>FRAVE</code>
3237                                           <scientific_name>Fragaria vesca</scientific_name>
3238                                           <common_name>Woodland strawberry</common_name>
3239                                           <synonym>Fragaria vesca L.</synonym>
3240                                           <synonym>European strawberry</synonym>
3241                                           <synonym>alpine strawberry</synonym>
3242                                           <rank>species</rank>
3243                                           <uri>http://www.boga.ruhr-uni-bochum.de/html/Fragaria.vesca.ja6.jpg</uri>
3244                                           <uri>http://caliban.mpiz-koeln.mpg.de/thome/band3/tafel_092_small.jpg</uri>
3245                                         </taxonomy>
3246                                       </clade>
3247                                       <clade>
3248                                         <name>PRUPE</name>
3249                                         <taxonomy>
3250                                           <id provider="uniprot">3760</id>
3251                                           <code>PRUPE</code>
3252                                           <scientific_name>Prunus persica</scientific_name>
3253                                           <common_name>Peach</common_name>
3254                                           <synonym>Persica vulgaris</synonym>
3255                                           <synonym>Amygdalus persica</synonym>
3256                                           <rank>species</rank>
3257                                           <uri>http://www.mezhenskyjv.narod.ru/foto_sortov/dokaz.jpg</uri>
3258                                         </taxonomy>
3259                                       </clade>
3260                                     </clade>
3261                                     <clade>
3262                                       <name>CUCSA</name>
3263                                       <taxonomy>
3264                                         <id provider="uniprot">3659</id>
3265                                         <code>CUCSA</code>
3266                                         <scientific_name>Cucumis sativus</scientific_name>
3267                                         <common_name>Cucumber</common_name>
3268                                         <rank>species</rank>
3269                                       </taxonomy>
3270                                     </clade>
3271                                   </clade>
3272                                   <clade>
3273                                     <taxonomy>
3274                                       <id provider="uniprot">3814</id>
3275                                       <scientific_name>Papilionoideae</scientific_name>
3276                                       <rank>subfamily</rank>
3277                                     </taxonomy>
3278                                     <clade>
3279                                       <name>SOYBN</name>
3280                                       <taxonomy>
3281                                         <id provider="uniprot">3847</id>
3282                                         <code>SOYBN</code>
3283                                         <scientific_name>Glycine max</scientific_name>
3284                                         <authority>cv. Wye</authority>
3285                                         <common_name>Soybean</common_name>
3286                                         <synonym>Glycine hispida</synonym>
3287                                         <rank>species</rank>
3288                                       </taxonomy>
3289                                     </clade>
3290                                     <clade>
3291                                       <name>MEDTR</name>
3292                                       <taxonomy>
3293                                         <id provider="uniprot">3880</id>
3294                                         <code>MEDTR</code>
3295                                         <scientific_name>Medicago truncatula</scientific_name>
3296                                         <common_name>Barrel medic</common_name>
3297                                         <synonym>Medicago tribuloides</synonym>
3298                                         <rank>species</rank>
3299                                         <uri>http://crdp.ac-besancon.fr/flore/FABACEAE/photos/medicago_truncatula_30.jpg</uri>
3300                                       </taxonomy>
3301                                     </clade>
3302                                   </clade>
3303                                 </clade>
3304                                 <clade>
3305                                   <taxonomy>
3306                                     <id provider="uniprot">3646</id>
3307                                     <scientific_name>Malpighiales</scientific_name>
3308                                     <rank>order</rank>
3309                                   </taxonomy>
3310                                   <clade>
3311                                     <taxonomy>
3312                                       <id provider="uniprot">3977</id>
3313                                       <scientific_name>Euphorbiaceae</scientific_name>
3314                                       <rank>family</rank>
3315                                     </taxonomy>
3316                                     <clade>
3317                                       <name>MANES</name>
3318                                       <taxonomy>
3319                                         <id provider="uniprot">3983</id>
3320                                         <code>MANES</code>
3321                                         <scientific_name>Manihot esculenta</scientific_name>
3322                                         <common_name>Tapioca</common_name>
3323                                         <synonym>Jatropha manihot</synonym>
3324                                         <rank>species</rank>
3325                                         <uri>http://upload.wikimedia.org/wikipedia/commons/9/99/Iwata_kenichi_cassava.jpg</uri>
3326                                       </taxonomy>
3327                                     </clade>
3328                                     <clade>
3329                                       <name>RICCO</name>
3330                                       <taxonomy>
3331                                         <id provider="uniprot">3988</id>
3332                                         <code>RICCO</code>
3333                                         <scientific_name>Ricinus communis</scientific_name>
3334                                         <common_name>Castor bean</common_name>
3335                                         <synonym>Ricinus sanguineus</synonym>
3336                                         <rank>species</rank>
3337                                         <uri>http://nmorganics.net/wp-content/uploads/2011/09/castor.jpg</uri>
3338                                       </taxonomy>
3339                                     </clade>
3340                                   </clade>
3341                                   <clade>
3342                                     <name>POPTR</name>
3343                                     <taxonomy>
3344                                       <id provider="uniprot">3694</id>
3345                                       <code>POPTR</code>
3346                                       <scientific_name>Populus trichocarpa</scientific_name>
3347                                       <common_name>Western balsam poplar</common_name>
3348                                       <synonym>Populus balsamifera subsp. trichocarpa</synonym>
3349                                       <rank>species</rank>
3350                                     </taxonomy>
3351                                   </clade>
3352                                 </clade>
3353                               </clade>
3354                               <clade>
3355                                 <taxonomy>
3356                                   <id provider="uniprot">91836</id>
3357                                   <scientific_name>malvids</scientific_name>
3358                                 </taxonomy>
3359                                 <clade>
3360                                   <name>Brassicales &amp; Sapindales</name>
3361                                   <clade>
3362                                     <taxonomy>
3363                                       <id provider="uniprot">3699</id>
3364                                       <scientific_name>Brassicales</scientific_name>
3365                                       <rank>order</rank>
3366                                     </taxonomy>
3367                                     <clade>
3368                                       <taxonomy>
3369                                         <id provider="uniprot">3700</id>
3370                                         <scientific_name>Brassicaceae</scientific_name>
3371                                         <rank>family</rank>
3372                                       </taxonomy>
3373                                       <clade>
3374                                         <taxonomy>
3375                                           <id provider="uniprot">3701</id>
3376                                           <scientific_name>Arabidopsis</scientific_name>
3377                                           <rank>genus</rank>
3378                                         </taxonomy>
3379                                         <clade>
3380                                           <name>ARALY</name>
3381                                           <taxonomy>
3382                                             <id provider="uniprot">59689</id>
3383                                             <code>ARALY</code>
3384                                             <scientific_name>Arabidopsis lyrata</scientific_name>
3385                                             <common_name>Lyre-leaved rock-cress</common_name>
3386                                             <rank>species</rank>
3387                                           </taxonomy>
3388                                         </clade>
3389                                         <clade>
3390                                           <name>ARATH</name>
3391                                           <taxonomy>
3392                                             <id provider="uniprot">3702</id>
3393                                             <code>ARATH</code>
3394                                             <scientific_name>Arabidopsis thaliana</scientific_name>
3395                                             <common_name>Mouse-ear cress</common_name>
3396                                             <rank>species</rank>
3397                                           </taxonomy>
3398                                         </clade>
3399                                       </clade>
3400                                       <clade>
3401                                         <taxonomy>
3402                                           <id provider="uniprot">98038</id>
3403                                           <code>THEHA</code>
3404                                           <scientific_name>Thellungiella halophila</scientific_name>
3405                                           <common_name>Salt cress</common_name>
3406                                           <rank>species</rank>
3407                                           <uri>http://thellungiella.org/images/thellun1.jpg</uri>
3408                                         </taxonomy>
3409                                       </clade>
3410                                     </clade>
3411                                     <clade>
3412                                       <name>CARPA</name>
3413                                       <taxonomy>
3414                                         <id provider="uniprot">3649</id>
3415                                         <code>CARPA</code>
3416                                         <scientific_name>Carica papaya</scientific_name>
3417                                         <common_name>Papaya</common_name>
3418                                         <rank>species</rank>
3419                                         <uri>http://www.biopix.com/photos/jko-carica-papaya-00412.jpg</uri>
3420                                         <uri>http://www.texasriviera.com/greenthumbs/papaya10.jpg</uri>
3421                                       </taxonomy>
3422                                     </clade>
3423                                   </clade>
3424                                   <clade>
3425                                     <taxonomy>
3426                                       <id provider="uniprot">2706</id>
3427                                       <scientific_name>Citrus</scientific_name>
3428                                       <rank>genus</rank>
3429                                     </taxonomy>
3430                                     <clade>
3431                                       <name>CITCLE</name>
3432                                       <taxonomy>
3433                                         <id provider="uniprot">85681</id>
3434                                         <scientific_name>Citrus clementina</scientific_name>
3435                                         <synonym>Citrus clementina hort. ex Tanaka</synonym>
3436                                         <rank>species</rank>
3437                                         <uri>http://palmen-bolschetz.de/images/citrus%20clementine.jpg</uri>
3438                                       </taxonomy>
3439                                     </clade>
3440                                     <clade>
3441                                       <name>CITSI</name>
3442                                       <taxonomy>
3443                                         <id provider="uniprot">2711</id>
3444                                         <code>CITSI</code>
3445                                         <scientific_name>Citrus sinensis</scientific_name>
3446                                         <common_name>Sweet orange</common_name>
3447                                         <synonym>Citrus x sinensis</synonym>
3448                                         <synonym>Citrus aurantium var. sinensis</synonym>
3449                                         <rank>species</rank>
3450                                         <uri>http://www.west-crete.com/flowers/photos/citrus_sinensis-1.jpg</uri>
3451                                       </taxonomy>
3452                                     </clade>
3453                                   </clade>
3454                                 </clade>
3455                                 <clade>
3456                                   <name>EUCGR</name>
3457                                   <taxonomy>
3458                                     <id provider="uniprot">71139</id>
3459                                     <code>EUCGR</code>
3460                                     <scientific_name>Eucalyptus grandis</scientific_name>
3461                                     <common_name>Flooded gum</common_name>
3462                                     <rank>species</rank>
3463                                     <uri>http://www.calflora.net/losangelesarboretum/images/eucalyptus_grandis.jpg</uri>
3464                                     <uri>http://www.anbg.gov.au/projects/eucalypts/images/eucalyptus-grandis-bark.jpg</uri>
3465                                   </taxonomy>
3466                                 </clade>
3467                               </clade>
3468                             </clade>
3469                             <clade>
3470                               <name>VITVI</name>
3471                               <taxonomy>
3472                                 <id provider="eol">582304</id>
3473                                 <code>VITVI</code>
3474                                 <scientific_name>Vitis vinifera</scientific_name>
3475                                 <common_name>Grape</common_name>
3476                                 <rank>species</rank>
3477                               </taxonomy>
3478                             </clade>
3479                           </clade>
3480                           <clade>
3481                             <taxonomy>
3482                               <id provider="uniprot">91888</id>
3483                               <scientific_name>lamiids</scientific_name>
3484                             </taxonomy>
3485                             <clade>
3486                               <taxonomy>
3487                                 <id provider="uniprot">4070</id>
3488                                 <scientific_name>Solanaceae</scientific_name>
3489                                 <rank>family</rank>
3490                               </taxonomy>
3491                               <clade>
3492                                 <taxonomy>
3493                                   <id provider="uniprot">4107</id>
3494                                   <scientific_name>Solanum</scientific_name>
3495                                   <rank>genus</rank>
3496                                 </taxonomy>
3497                                 <clade>
3498                                   <taxonomy>
3499                                     <id provider="uniprot">49274</id>
3500                                     <scientific_name>Lycopersicon</scientific_name>
3501                                     <rank>subgenus</rank>
3502                                   </taxonomy>
3503                                   <clade>
3504                                     <taxonomy>
3505                                       <id provider="uniprot">4081</id>
3506                                       <code>SOLLC</code>
3507                                       <scientific_name>Solanum lycopersicum</scientific_name>
3508                                       <common_name>Tomato</common_name>
3509                                       <synonym>Lycopersicon esculentum</synonym>
3510                                       <rank>species</rank>
3511                                       <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0905/1214.jpeg</uri>
3512                                     </taxonomy>
3513                                   </clade>
3514                                   <clade>
3515                                     <taxonomy>
3516                                       <id provider="uniprot">4084</id>
3517                                       <code>SOLPI</code>
3518                                       <scientific_name>Solanum pimpinellifolium</scientific_name>
3519                                       <common_name>Currant tomato</common_name>
3520                                       <synonym>Lycopersicon pimpinellifolium</synonym>
3521                                       <rank>species</rank>
3522                                       <uri>http://botany.csdl.tamu.edu/FLORA/hdwimages2/hdwt4-14.jpg</uri>
3523                                     </taxonomy>
3524                                   </clade>
3525                                 </clade>
3526                                 <clade>
3527                                   <taxonomy>
3528                                     <id provider="4113">uniprot</id>
3529                                     <code>SOLTU</code>
3530                                     <scientific_name>Solanum tuberosum</scientific_name>
3531                                     <common_name>Potato</common_name>
3532                                     <rank>species</rank>
3533                                     <uri>http://www.hear.org/starr/images/images/plants/600/starr-080914-9947.jpg</uri>
3534                                   </taxonomy>
3535                                 </clade>
3536                               </clade>
3537                               <clade>
3538                                 <taxonomy>
3539                                   <id provider="uniprot">4097</id>
3540                                   <code>TOBAC</code>
3541                                   <scientific_name>Nicotiana tabacum</scientific_name>
3542                                   <common_name>Common tobacco</common_name>
3543                                   <rank>species</rank>
3544                                   <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0105/2073.jpeg</uri>
3545                                 </taxonomy>
3546                               </clade>
3547                             </clade>
3548                             <clade>
3549                               <name>MIMGU</name>
3550                               <taxonomy>
3551                                 <id provider="uniprot">4155</id>
3552                                 <code>MIMGU</code>
3553                                 <scientific_name>Mimulus guttatus</scientific_name>
3554                                 <common_name>Yellow monkey flower</common_name>
3555                                 <synonym>Yellow monkey flower</synonym>
3556                                 <rank>species</rank>
3557                               </taxonomy>
3558                             </clade>
3559                           </clade>
3560                         </clade>
3561                         <clade>
3562                           <name>AQUCA</name>
3563                           <taxonomy>
3564                             <id provider="uniprot">218851</id>
3565                             <code>AQUCA</code>
3566                             <scientific_name>Aquilegia caerulea</scientific_name>
3567                             <authority>E.James</authority>
3568                             <common_name>Rocky mountain columbine</common_name>
3569                             <synonym>Aquilegia coerulea</synonym>
3570                             <rank>species</rank>
3571                             <uri>http://content9.eol.org/content/2010/01/01/03/15137_large.jpg</uri>
3572                           </taxonomy>
3573                         </clade>
3574                       </clade>
3575                       <clade>
3576                         <taxonomy>
3577                           <id provider="uniprot">4479</id>
3578                           <scientific_name>Poaceae</scientific_name>
3579                           <common_name>grass family</common_name>
3580                           <synonym>Gramineae</synonym>
3581                           <rank>family</rank>
3582                         </taxonomy>
3583                         <clade>
3584                           <taxonomy>
3585                             <id provider="uniprot">147369</id>
3586                             <scientific_name>Panicoideae</scientific_name>
3587                             <authority>Link, 1827</authority>
3588                             <synonym>Centothecoideae</synonym>
3589                             <rank>subfamily</rank>
3590                           </taxonomy>
3591                           <clade>
3592                             <taxonomy>
3593                               <id provider="uniprot">147429</id>
3594                               <scientific_name>Andropogoneae</scientific_name>
3595                               <authority>Dumort., 1824</authority>
3596                               <rank>tribe</rank>
3597                             </taxonomy>
3598                             <clade>
3599                               <name>SORBI</name>
3600                               <taxonomy>
3601                                 <id provider="uniprot">4558</id>
3602                                 <code>SORBI</code>
3603                                 <scientific_name>Sorghum bicolor</scientific_name>
3604                                 <common_name>Sorghum</common_name>
3605                                 <synonym>Sorghum vulgare</synonym>
3606                                 <rank>species</rank>
3607                               </taxonomy>
3608                             </clade>
3609                             <clade>
3610                               <name>MAIZE</name>
3611                               <taxonomy>
3612                                 <id provider="uniprot">4577</id>
3613                                 <code>MAIZE</code>
3614                                 <scientific_name>Zea mays</scientific_name>
3615                                 <common_name>Maize</common_name>
3616                                 <rank>species</rank>
3617                               </taxonomy>
3618                             </clade>
3619                           </clade>
3620                           <clade>
3621                             <taxonomy>
3622                               <id provider="uniprot">147428</id>
3623                               <scientific_name>Paniceae</scientific_name>
3624                               <rank>tribe</rank>
3625                             </taxonomy>
3626                             <clade>
3627                               <name>PANVIR</name>
3628                               <taxonomy>
3629                                 <id provider="uniprot">38727</id>
3630                                 <scientific_name>Panicum virgatum</scientific_name>
3631                                 <common_name>switchgrass</common_name>
3632                                 <rank>species</rank>
3633                                 <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/2/29/PanicumVirgatum.jpg/220px-PanicumVirgatum.jpg</uri>
3634                               </taxonomy>
3635                             </clade>
3636                             <clade>
3637                               <name>SETIT</name>
3638                               <taxonomy>
3639                                 <id provider="uniprot">4555</id>
3640                                 <code>SETIT</code>
3641                                 <scientific_name>Setaria italica</scientific_name>
3642                                 <common_name>Foxtail millet</common_name>
3643                                 <synonym>Panicum italicum</synonym>
3644                                 <rank>species</rank>
3645                                 <uri>http://en.academic.ru/pictures/enwiki/83/Setaria_italica0.jpg</uri>
3646                               </taxonomy>
3647                             </clade>
3648                           </clade>
3649                         </clade>
3650                         <clade>
3651                           <taxonomy>
3652                             <id provider="uniprot">359160</id>
3653                             <scientific_name>BEP clade</scientific_name>
3654                           </taxonomy>
3655                           <clade>
3656                             <taxonomy>
3657                               <id provider="uniprot">4527</id>
3658                               <scientific_name>Oryza</scientific_name>
3659                               <rank>genus</rank>
3660                             </taxonomy>
3661                             <clade>
3662                               <name>ORYSA</name>
3663                               <taxonomy>
3664                                 <id provider="uniprot">4530</id>
3665                                 <code>ORYSA</code>
3666                                 <scientific_name>Oryza sativa</scientific_name>
3667                                 <common_name>Rice</common_name>
3668                                 <rank>species</rank>
3669                               </taxonomy>
3670                             </clade>
3671                             <clade>
3672                               <name>ORYSJ</name>
3673                               <taxonomy>
3674                                 <id provider="uniprot">39947</id>
3675                                 <code>ORYSJ</code>
3676                                 <scientific_name>Oryza sativa subsp. japonica</scientific_name>
3677                                 <common_name>Rice</common_name>
3678                               </taxonomy>
3679                             </clade>
3680                           </clade>
3681                           <clade>
3682                             <name>BRADI</name>
3683                             <taxonomy>
3684                               <id provider="uniprot">15368</id>
3685                               <code>BRADI</code>
3686                               <scientific_name>Brachypodium distachyon</scientific_name>
3687                               <common_name>Purple false brome</common_name>
3688                               <synonym>Trachynia distachya</synonym>
3689                               <rank>species</rank>
3690                               <uri>http://content5.eol.org/content/2011/01/15/20/16311_large.jpg</uri>
3691                             </taxonomy>
3692                           </clade>
3693                         </clade>
3694                       </clade>
3695                     </clade>
3696                     <clade>
3697                       <name>SELMO</name>
3698                       <taxonomy>
3699                         <id provider="uniprot">34167</id>
3700                         <code>SELMO</code>
3701                         <scientific_name>Selaginella mollis</scientific_name>
3702                         <common_name>Moss</common_name>
3703                         <rank>species</rank>
3704                       </taxonomy>
3705                     </clade>
3706                   </clade>
3707                   <clade>
3708                     <name>PHYPA</name>
3709                     <taxonomy>
3710                       <id provider="uniprot">145481</id>
3711                       <code>PHYPA</code>
3712                       <scientific_name>Physcomitrella patens subsp. patens</scientific_name>
3713                       <common_name>Moss</common_name>
3714                       <rank>subspecies</rank>
3715                     </taxonomy>
3716                   </clade>
3717                 </clade>
3718                 <clade>
3719                   <taxonomy>
3720                     <id provider="uniprot">3041</id>
3721                     <scientific_name>Chlorophyta</scientific_name>
3722                     <rank>phylum</rank>
3723                   </taxonomy>
3724                   <clade>
3725                     <taxonomy>
3726                       <id provider="uniprot">13792</id>
3727                       <scientific_name>Mamiellales</scientific_name>
3728                       <rank>order</rank>
3729                     </taxonomy>
3730                     <clade>
3731                       <taxonomy>
3732                         <id provider="uniprot">70447</id>
3733                         <scientific_name>Ostreococcus</scientific_name>
3734                         <rank>genus</rank>
3735                       </taxonomy>
3736                       <clade>
3737                         <name>OSTLU</name>
3738                         <taxonomy>
3739                           <id provider="uniprot">436017</id>
3740                           <code>OSTLU</code>
3741                           <scientific_name>Ostreococcus lucimarinus (strain CCE9901)</scientific_name>
3742                         </taxonomy>
3743                       </clade>
3744                       <clade>
3745                         <name>OSTRC</name>
3746                         <taxonomy>
3747                           <id provider="uniprot">385169</id>
3748                           <scientific_name>Ostreococcus sp. RCC809</scientific_name>
3749                           <rank>species</rank>
3750                         </taxonomy>
3751                       </clade>
3752                       <clade>
3753                         <name>OSTTA</name>
3754                         <taxonomy>
3755                           <id provider="uniprot">70448</id>
3756                           <code>OSTTA</code>
3757                           <scientific_name>Ostreococcus tauri</scientific_name>
3758                           <rank>species</rank>
3759                         </taxonomy>
3760                       </clade>
3761                     </clade>
3762                     <clade>
3763                       <taxonomy>
3764                         <id provider="uniprot">38832</id>
3765                         <scientific_name>Micromonas</scientific_name>
3766                         <rank>genus</rank>
3767                       </taxonomy>
3768                       <clade>
3769                         <name>MICPC</name>
3770                         <taxonomy>
3771                           <id provider="uniprot">564608</id>
3772                           <code>MICPC</code>
3773                           <scientific_name>Micromonas pusilla (strain CCMP1545)</scientific_name>
3774                           <common_name>Picoplanktonic green alga</common_name>
3775                         </taxonomy>
3776                       </clade>
3777                       <clade>
3778                         <name>MICSR</name>
3779                         <taxonomy>
3780                           <id provider="uniprot">296587</id>
3781                           <code>MICSR</code>
3782                           <scientific_name>Micromonas sp. (strain RCC299 / NOUM17)</scientific_name>
3783                           <common_name>Picoplanktonic green alga</common_name>
3784                           <synonym>Micromonas sp. RCC299</synonym>
3785                           <rank>species</rank>
3786                         </taxonomy>
3787                       </clade>
3788                     </clade>
3789                   </clade>
3790                   <clade>
3791                     <name>Trebouxiophyceae &amp; Chlorophyceae</name>
3792                     <clade>
3793                       <taxonomy>
3794                         <id provider="uniprot">75966</id>
3795                         <scientific_name>Trebouxiophyceae</scientific_name>
3796                         <rank>class</rank>
3797                       </taxonomy>
3798                       <clade>
3799                         <name>ASTSPC</name>
3800                         <taxonomy>
3801                           <id provider="uniprot">763042</id>
3802                           <scientific_name>Asterochloris sp. Cgr/DA1pho</scientific_name>
3803                           <rank>species</rank>
3804                           <uri>http://genome.jgi-psf.org/Astpho1/Figure_3.jpg</uri>
3805                         </taxonomy>
3806                       </clade>
3807                       <clade>
3808                         <name>CHLSP</name>
3809                         <taxonomy>
3810                           <id provider="uniprot">554065</id>
3811                           <scientific_name>Chlorella variabilis</scientific_name>
3812                           <synonym>Chlorella sp. NC64A</synonym>
3813                           <rank>species</rank>
3814                         </taxonomy>
3815                       </clade>
3816                       <clade>
3817                         <name>CHLVUL</name>
3818                         <taxonomy>
3819                           <id provider="uniprot">574566</id>
3820                           <scientific_name>Coccomyxa sp. C-169</scientific_name>
3821                           <synonym>Chlorella vulgaris C-169</synonym>
3822                           <rank>species</rank>
3823                         </taxonomy>
3824                       </clade>
3825                     </clade>
3826                     <clade>
3827                       <taxonomy>
3828                         <id provider="uniprot">3042</id>
3829                         <scientific_name>Chlamydomonadales</scientific_name>
3830                         <rank>order</rank>
3831                       </taxonomy>
3832                       <clade>
3833                         <name>CHLRE</name>
3834                         <taxonomy>
3835                           <id provider="uniprot">3055</id>
3836                           <code>CHLRE</code>
3837                           <scientific_name>Chlamydomonas reinhardtii</scientific_name>
3838                           <synonym>Chlamydomonas smithii</synonym>
3839                           <rank>species</rank>
3840                         </taxonomy>
3841                       </clade>
3842                       <clade>
3843                         <name>VOLCA</name>
3844                         <taxonomy>
3845                           <id provider="uniprot">3067</id>
3846                           <code>VOLCA</code>
3847                           <scientific_name>Volvox carteri</scientific_name>
3848                           <common_name>Green alga</common_name>
3849                           <rank>species</rank>
3850                         </taxonomy>
3851                       </clade>
3852                     </clade>
3853                   </clade>
3854                 </clade>
3855               </clade>
3856               <clade>
3857                 <name>CYAME</name>
3858                 <taxonomy>
3859                   <id provider="uniprot">45157</id>
3860                   <code>CYAME</code>
3861                   <scientific_name>Cyanidioschyzon merolae</scientific_name>
3862                   <common_name>Red alga</common_name>
3863                   <rank>species</rank>
3864                   <uri>http://merolae.biol.s.u-tokyo.ac.jp/</uri>
3865                 </taxonomy>
3866               </clade>
3867             </clade>
3868             <clade>
3869               <name>Chromalveolate</name>
3870               <reference doi="10.1073/pnas.0712248105">
3871               </reference>
3872               <clade>
3873                 <name>Heterokonta_Alveolata</name>
3874                 <clade>
3875                   <name>Alveolata</name>
3876                   <taxonomy>
3877                     <id provider="uniprot">33630</id>
3878                     <scientific_name>Alveolata</scientific_name>
3879                   </taxonomy>
3880                   <clade>
3881                     <taxonomy>
3882                       <id provider="uniprot">5794</id>
3883                       <scientific_name>Apicomplexa</scientific_name>
3884                       <rank>phylum</rank>
3885                     </taxonomy>
3886                     <clade>
3887                       <taxonomy>
3888                         <id provider="uniprot">422676</id>
3889                         <scientific_name>Aconoidasida</scientific_name>
3890                         <rank>class</rank>
3891                       </taxonomy>
3892                       <clade>
3893                         <taxonomy>
3894                           <id provider="uniprot">5820</id>
3895                           <scientific_name>Plasmodium</scientific_name>
3896                           <rank>genus</rank>
3897                         </taxonomy>
3898                         <clade>
3899                           <name>PLACH</name>
3900                           <taxonomy>
3901                             <id provider="uniprot">5825</id>
3902                             <code>PLACH</code>
3903                             <scientific_name>Plasmodium chabaudi</scientific_name>
3904                             <rank>species</rank>
3905                           </taxonomy>
3906                         </clade>
3907                         <clade>
3908                           <name>PLAFA</name>
3909                           <taxonomy>
3910                             <id provider="uniprot">5833</id>
3911                             <code>PLAFA</code>
3912                             <scientific_name>Plasmodium falciparum</scientific_name>
3913                             <rank>species</rank>
3914                           </taxonomy>
3915                         </clade>
3916                         <clade>
3917                           <name>PLAYO</name>
3918                           <taxonomy>
3919                             <id provider="uniprot">73239</id>
3920                             <code>PLAYO</code>
3921                             <scientific_name>Plasmodium yoelii yoelii</scientific_name>
3922                             <rank>subspecies</rank>
3923                           </taxonomy>
3924                         </clade>
3925                       </clade>
3926                       <clade>
3927                         <name>Theileria</name>
3928                         <taxonomy>
3929                           <id provider="uniprot">5873</id>
3930                           <scientific_name>Theileria</scientific_name>
3931                           <rank>genus</rank>
3932                         </taxonomy>
3933                         <clade>
3934                           <name>THEAN</name>
3935                           <taxonomy>
3936                             <id provider="uniprot">5874</id>
3937                             <code>THEAN</code>
3938                             <scientific_name>Theileria annulata</scientific_name>
3939                             <rank>species</rank>
3940                           </taxonomy>
3941                         </clade>
3942                         <clade>
3943                           <name>THEPA</name>
3944                           <taxonomy>
3945                             <id provider="uniprot">5875</id>
3946                             <code>THEPA</code>
3947                             <scientific_name>Theileria parva</scientific_name>
3948                             <rank>species</rank>
3949                           </taxonomy>
3950                         </clade>
3951                       </clade>
3952                     </clade>
3953                     <clade>
3954                       <taxonomy>
3955                         <id provider="uniprot">423054</id>
3956                         <scientific_name>Eimeriorina</scientific_name>
3957                         <rank>suborder</rank>
3958                       </taxonomy>
3959                       <clade>
3960                         <taxonomy>
3961                           <id provider="uniprot">5806</id>
3962                           <scientific_name>Cryptosporidium</scientific_name>
3963                           <rank>genus</rank>
3964                         </taxonomy>
3965                         <clade>
3966                           <name>CRYHO</name>
3967                           <taxonomy>
3968                             <id provider="uniprot">237895</id>
3969                             <code>CRYHO</code>
3970                             <scientific_name>Cryptosporidium hominis</scientific_name>
3971                             <rank>species</rank>
3972                           </taxonomy>
3973                         </clade>
3974                         <clade>
3975                           <name>CRYPV</name>
3976                           <taxonomy>
3977                             <id provider="uniprot">5807</id>
3978                             <code>CRYPV</code>
3979                             <scientific_name>Cryptosporidium parvum</scientific_name>
3980                             <rank>species</rank>
3981                           </taxonomy>
3982                         </clade>
3983                       </clade>
3984                       <clade>
3985                         <name>Eimeria &amp; Toxoplasma</name>
3986                         <reference doi="10.1093/molbev/msn213">
3987                           <desc>The Apicomplexan Whole-Genome Phylogeny: An Analysis of Incongruence among Gene Trees</desc>
3988                         </reference>
3989                         <reference>
3990                         </reference>
3991                         <clade>
3992                           <taxonomy>
3993                             <id provider="uniprot">5802</id>
3994                             <code>EIMTE</code>
3995                             <scientific_name>Eimeria tenella</scientific_name>
3996                             <common_name>Coccidian parasite</common_name>
3997                             <rank>species</rank>
3998                             <uri>http://www.k-state.edu/parasitology/625tutorials/FIGtenella.jpg</uri>
3999                           </taxonomy>
4000                         </clade>
4001                         <clade>
4002                           <name>TOXGO</name>
4003                           <taxonomy>
4004                             <id provider="uniprot">5811</id>
4005                             <code>TOXGO</code>
4006                             <scientific_name>Toxoplasma gondii</scientific_name>
4007                             <rank>species</rank>
4008                           </taxonomy>
4009                         </clade>
4010                       </clade>
4011                     </clade>
4012                   </clade>
4013                   <clade>
4014                     <taxonomy>
4015                       <id provider="uniprot">6020</id>
4016                       <scientific_name>Oligohymenophorea</scientific_name>
4017                       <rank>class</rank>
4018                     </taxonomy>
4019                     <clade>
4020                       <name>PARTE</name>
4021                       <taxonomy>
4022                         <id provider="uniprot">5888</id>
4023                         <code>PARTE</code>
4024                         <scientific_name>Paramecium tetraurelia</scientific_name>
4025                         <rank>species</rank>
4026                       </taxonomy>
4027                     </clade>
4028                     <clade>
4029                       <name>TETTH</name>
4030                       <taxonomy>
4031                         <id provider="uniprot">5911</id>
4032                         <code>TETTH</code>
4033                         <scientific_name>Tetrahymena thermophila</scientific_name>
4034                         <rank>species</rank>
4035                       </taxonomy>
4036                     </clade>
4037                   </clade>
4038                 </clade>
4039                 <clade>
4040                   <name>Heterokonta</name>
4041                   <taxonomy>
4042                     <id provider="uniprot">33634</id>
4043                     <scientific_name>stramenopiles</scientific_name>
4044                     <synonym>Chromophyta</synonym>
4045                   </taxonomy>
4046                   <clade>
4047                     <name>Pelagophyceae_Bacillariophyta</name>
4048                     <clade>
4049                       <taxonomy>
4050                         <id provider="uniprot">2836</id>
4051                         <scientific_name>Bacillariophyta</scientific_name>
4052                         <common_name>diatoms</common_name>
4053                         <rank>phylum</rank>
4054                       </taxonomy>
4055                       <clade>
4056                         <taxonomy>
4057                           <id provider="uniprot">33850</id>
4058                           <scientific_name>Bacillariophycidae</scientific_name>
4059                         </taxonomy>
4060                         <clade>
4061                           <name>FRACY</name>
4062                           <taxonomy>
4063                             <id provider="eol">911694</id>
4064                             <code>FRACY</code>
4065                             <scientific_name>Fragilariopsis cylindrus</scientific_name>
4066                             <authority>Krieger</authority>
4067                             <synonym>Nitzschia cylindrus</synonym>
4068                             <rank>species</rank>
4069                           </taxonomy>
4070                         </clade>
4071                         <clade>
4072                           <name>PHATR</name>
4073                           <taxonomy>
4074                             <id provider="eol">912693</id>
4075                             <code>PHATR</code>
4076                             <scientific_name>Phaeodactylum tricornutum</scientific_name>
4077                             <authority>Bohlin</authority>
4078                             <rank>species</rank>
4079                           </taxonomy>
4080                         </clade>
4081                       </clade>
4082                       <clade>
4083                         <name>THAPS</name>
4084                         <taxonomy>
4085                           <id provider="eol">916868</id>
4086                           <code>THAPS</code>
4087                           <scientific_name>Thalassiosira pseudonana</scientific_name>
4088                           <authority>Hasle &amp; Heimdal</authority>
4089                           <common_name>Marine diatom</common_name>
4090                           <synonym>Cyclotella nana</synonym>
4091                           <rank>species</rank>
4092                         </taxonomy>
4093                       </clade>
4094                     </clade>
4095                     <clade>
4096                       <name>AURAN</name>
4097                       <taxonomy>
4098                         <id provider="eol">912461</id>
4099                         <code>AURAN</code>
4100                         <scientific_name>Aureococcus anophagefferens</scientific_name>
4101                         <authority>Hargraves &amp; Sieburth</authority>
4102                         <rank>species</rank>
4103                       </taxonomy>
4104                     </clade>
4105                   </clade>
4106                   <clade>
4107                     <taxonomy>
4108                       <id provider="uniprot">4783</id>
4109                       <scientific_name>Phytophthora</scientific_name>
4110                       <rank>genus</rank>
4111                     </taxonomy>
4112                     <clade>
4113                       <name>PHYIN</name>
4114                       <taxonomy>
4115                         <id provider="uniprot">4787</id>
4116                         <code>PHYIN</code>
4117                         <scientific_name>Phytophthora infestans</scientific_name>
4118                         <common_name>Potato late blight fungus</common_name>
4119                         <rank>species</rank>
4120                       </taxonomy>
4121                     </clade>
4122                     <clade>
4123                       <name>PHYRM</name>
4124                       <taxonomy>
4125                         <id provider="uniprot">164328</id>
4126                         <code>PHYRM</code>
4127                         <scientific_name>Phytophthora ramorum</scientific_name>
4128                         <common_name>Sudden oak death agent</common_name>
4129                         <rank>species</rank>
4130                       </taxonomy>
4131                     </clade>
4132                     <clade>
4133                       <name>PHYSO</name>
4134                       <taxonomy>
4135                         <id provider="uniprot">67593</id>
4136                         <scientific_name>Phytophthora sojae</scientific_name>
4137                         <rank>species</rank>
4138                       </taxonomy>
4139                     </clade>
4140                   </clade>
4141                 </clade>
4142               </clade>
4143               <clade>
4144                 <name>EMIHU</name>
4145                 <taxonomy>
4146                   <id provider="uniprot">2903</id>
4147                   <code>EMIHU</code>
4148                   <scientific_name>Emiliania huxleyi</scientific_name>
4149                   <rank>species</rank>
4150                 </taxonomy>
4151               </clade>
4152             </clade>
4153           </clade>
4154           <clade>
4155             <name>Excavata</name>
4156             <reference doi="10.1038/nature04546">
4157             </reference>
4158             <clade>
4159               <name>Kinetoplastida_Heterolobosea</name>
4160               <clade>
4161                 <taxonomy>
4162                   <id provider="uniprot">5654</id>
4163                   <scientific_name>Trypanosomatidae</scientific_name>
4164                   <rank>family</rank>
4165                 </taxonomy>
4166                 <clade>
4167                   <name>LEIMA</name>
4168                   <taxonomy>
4169                     <id provider="uniprot">5664</id>
4170                     <code>LEIMA</code>
4171                     <scientific_name>Leishmania major</scientific_name>
4172                     <rank>species</rank>
4173                   </taxonomy>
4174                 </clade>
4175                 <clade>
4176                   <name>TRYBB</name>
4177                   <taxonomy>
4178                     <id provider="uniprot">5702</id>
4179                     <code>TRYBB</code>
4180                     <scientific_name>Trypanosoma brucei brucei</scientific_name>
4181                     <rank>subspecies</rank>
4182                   </taxonomy>
4183                 </clade>
4184               </clade>
4185               <clade>
4186                 <name>NAEGR</name>
4187                 <taxonomy>
4188                   <id provider="uniprot">5762</id>
4189                   <code>NAEGR</code>
4190                   <scientific_name>Naegleria gruberi</scientific_name>
4191                   <common_name>Amoeba</common_name>
4192                   <rank>species</rank>
4193                 </taxonomy>
4194               </clade>
4195             </clade>
4196             <clade>
4197               <name>Metamonada</name>
4198               <clade>
4199                 <name>GIALA</name>
4200                 <taxonomy>
4201                   <id provider="uniprot">5741</id>
4202                   <code>GIALA</code>
4203                   <scientific_name>Giardia lamblia</scientific_name>
4204                   <synonym>Giardia intestinalis</synonym>
4205                   <synonym>Giardia lamblia</synonym>
4206                   <rank>species</rank>
4207                 </taxonomy>
4208               </clade>
4209               <clade>
4210                 <name>TRIVA</name>
4211                 <taxonomy>
4212                   <id provider="uniprot">5722</id>
4213                   <code>TRIVA</code>
4214                   <scientific_name>Trichomonas vaginalis</scientific_name>
4215                   <rank>species</rank>
4216                 </taxonomy>
4217               </clade>
4218             </clade>
4219           </clade>
4220         </clade>
4221       </clade>
4222       <clade>
4223         <name>Archaea</name>
4224         <taxonomy>
4225           <id provider="uniprot">2157</id>
4226           <scientific_name>Archaea</scientific_name>
4227           <rank>superkingdom</rank>
4228         </taxonomy>
4229         <clade>
4230           <name>a_62</name>
4231           <clade>
4232             <name>a_56</name>
4233             <clade>
4234               <taxonomy>
4235                 <id provider="uniprot">28890</id>
4236                 <scientific_name>Euryarchaeota</scientific_name>
4237                 <rank>phylum</rank>
4238               </taxonomy>
4239               <clade>
4240                 <name>a_44</name>
4241                 <clade>
4242                   <name>a_28</name>
4243                   <clade>
4244                     <name>a_26</name>
4245                     <clade>
4246                       <taxonomy>
4247                         <id provider="uniprot">224756</id>
4248                         <scientific_name>Methanomicrobia</scientific_name>
4249                         <rank>class</rank>
4250                       </taxonomy>
4251                       <clade>
4252                         <name>a_14</name>
4253                         <clade>
4254                           <name>a_12</name>
4255                           <clade>
4256                             <taxonomy>
4257                               <id provider="uniprot">2206</id>
4258                               <scientific_name>Methanosarcinaceae</scientific_name>
4259                               <rank>family</rank>
4260                             </taxonomy>
4261                             <clade>
4262                               <taxonomy>
4263                                 <id provider="uniprot">2207</id>
4264                                 <scientific_name>Methanosarcina</scientific_name>
4265                                 <rank>genus</rank>
4266                               </taxonomy>
4267                               <clade>
4268                                 <name>a_2</name>
4269                                 <clade>
4270                                   <name>METAC</name>
4271                                   <taxonomy>
4272                                     <id provider="uniprot">2214</id>
4273                                     <code>METAC</code>
4274                                     <scientific_name>Methanosarcina acetivorans</scientific_name>
4275                                     <rank>species</rank>
4276                                   </taxonomy>
4277                                 </clade>
4278                                 <clade>
4279                                   <name>METBF</name>
4280                                   <taxonomy>
4281                                     <id provider="uniprot">269797</id>
4282                                     <code>METBF</code>
4283                                     <scientific_name>Methanosarcina barkeri (strain Fusaro / DSM 804)</scientific_name>
4284                                   </taxonomy>
4285                                 </clade>
4286                               </clade>
4287                               <clade>
4288                                 <name>METMA</name>
4289                                 <taxonomy>
4290                                   <id provider="uniprot">2209</id>
4291                                   <code>METMA</code>
4292                                   <scientific_name>Methanosarcina mazei</scientific_name>
4293                                   <synonym>Methanosarcina frisia</synonym>
4294                                   <rank>species</rank>
4295                                 </taxonomy>
4296                               </clade>
4297                             </clade>
4298                             <clade>
4299                               <name>METBU</name>
4300                               <taxonomy>
4301                                 <id provider="uniprot">259564</id>
4302                                 <code>METBU</code>
4303                                 <scientific_name>Methanococcoides burtonii (strain DSM 6242)</scientific_name>
4304                               </taxonomy>
4305                             </clade>
4306                           </clade>
4307                           <clade>
4308                             <name>a_11</name>
4309                             <taxonomy>
4310                               <id provider="uniprot">2191</id>
4311                               <scientific_name>Methanomicrobiales</scientific_name>
4312                               <rank>order</rank>
4313                             </taxonomy>
4314                             <clade>
4315                               <name>a_9</name>
4316                               <clade>
4317                                 <name>METB6</name>
4318                                 <taxonomy>
4319                                   <id provider="uniprot">456442</id>
4320                                   <code>METB6</code>
4321                                   <scientific_name>Methanoregula boonei (strain 6A8)</scientific_name>
4322                                 </taxonomy>
4323                               </clade>
4324                               <clade>
4325                                 <name>METHU</name>
4326                                 <taxonomy>
4327                                   <id provider="uniprot">2203</id>
4328                                   <code>METHU</code>
4329                                   <scientific_name>Methanospirillum hungatei</scientific_name>
4330                                   <rank>species</rank>
4331                                 </taxonomy>
4332                               </clade>
4333                             </clade>
4334                             <clade>
4335                               <name>METMJ</name>
4336                               <taxonomy>
4337                                 <id provider="uniprot">368407</id>
4338                                 <code>METMJ</code>
4339                                 <scientific_name>Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1)</scientific_name>
4340                               </taxonomy>
4341                             </clade>
4342                           </clade>
4343                         </clade>
4344                         <clade>
4345                           <name>METLZ</name>
4346                           <taxonomy>
4347                             <id provider="uniprot">410358</id>
4348                             <code>METLZ</code>
4349                             <scientific_name>Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z)</scientific_name>
4350                           </taxonomy>
4351                         </clade>
4352                       </clade>
4353                       <clade>
4354                         <name>METTP</name>
4355                         <taxonomy>
4356                           <id provider="uniprot">349307</id>
4357                           <code>METTP</code>
4358                           <scientific_name>Methanosaeta thermophila (strain DSM 6194 / PT)</scientific_name>
4359                           <synonym>Methanothrix thermophila (strain DSM 6194 / PT)</synonym>
4360                         </taxonomy>
4361                       </clade>
4362                     </clade>
4363                     <clade>
4364                       <name>a_25</name>
4365                       <taxonomy>
4366                         <id provider="uniprot">2236</id>
4367                         <scientific_name>Halobacteriaceae</scientific_name>
4368                         <rank>family</rank>
4369                       </taxonomy>
4370                       <clade>
4371                         <name>a_23</name>
4372                         <clade>
4373                           <name>a_19</name>
4374                           <clade>
4375                             <name>HALMA</name>
4376                             <taxonomy>
4377                               <id provider="uniprot">2238</id>
4378                               <code>HALMA</code>
4379                               <scientific_name>Haloarcula marismortui</scientific_name>
4380                               <synonym>Halobacterium marismortui</synonym>
4381                               <rank>species</rank>
4382                             </taxonomy>
4383                           </clade>
4384                           <clade>
4385                             <name>NATPH</name>
4386                             <taxonomy>
4387                               <id provider="uniprot">2257</id>
4388                               <code>NATPH</code>
4389                               <scientific_name>Natronomonas pharaonis</scientific_name>
4390                               <common_name>Natronobacterium pharaonis</common_name>
4391                               <rank>species</rank>
4392                             </taxonomy>
4393                           </clade>
4394                         </clade>
4395                         <clade>
4396                           <name>a_22</name>
4397                           <taxonomy>
4398                             <id provider="uniprot">2239</id>
4399                             <scientific_name>Halobacterium</scientific_name>
4400                             <rank>genus</rank>
4401                           </taxonomy>
4402                           <clade>
4403                             <name>HALS3</name>
4404                             <taxonomy>
4405                               <id provider="uniprot">478009</id>
4406                               <code>HALS3</code>
4407                               <scientific_name>Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1)</scientific_name>
4408                             </taxonomy>
4409                           </clade>
4410                           <clade>
4411                             <name>HALSP</name>
4412                             <taxonomy>
4413                               <id provider="uniprot">2243</id>
4414                               <code>HALSP</code>
4415                               <scientific_name>Halobacterium sp.</scientific_name>
4416                               <rank>species</rank>
4417                             </taxonomy>
4418                           </clade>
4419                         </clade>
4420                       </clade>
4421                       <clade>
4422                         <name>HALWD</name>
4423                         <taxonomy>
4424                           <id provider="uniprot">362976</id>
4425                           <code>HALWD</code>
4426                           <scientific_name>Haloquadratum walsbyi (strain DSM 16790)</scientific_name>
4427                         </taxonomy>
4428                       </clade>
4429                     </clade>
4430                   </clade>
4431                   <clade>
4432                     <name>ARCFU</name>
4433                     <taxonomy>
4434                       <id provider="uniprot">2234</id>
4435                       <code>ARCFU</code>
4436                       <scientific_name>Archaeoglobus fulgidus</scientific_name>
4437                       <rank>species</rank>
4438                     </taxonomy>
4439                   </clade>
4440                 </clade>
4441                 <clade>
4442                   <name>a_43</name>
4443                   <clade>
4444                     <name>a_41</name>
4445                     <clade>
4446                       <name>a_35</name>
4447                       <taxonomy>
4448                         <id provider="uniprot">2182</id>
4449                         <scientific_name>Methanococcales</scientific_name>
4450                         <rank>order</rank>
4451                       </taxonomy>
4452                       <clade>
4453                         <name>a_31</name>
4454                         <clade>
4455                           <name>METJA</name>
4456                           <taxonomy>
4457                             <id provider="uniprot">2190</id>
4458                             <code>METJA</code>
4459                             <scientific_name>Methanocaldococcus jannaschii</scientific_name>
4460                             <synonym>Methanococcus jannaschii</synonym>
4461                             <rank>species</rank>
4462                           </taxonomy>
4463                         </clade>
4464                         <clade>
4465                           <name>META3</name>
4466                           <taxonomy>
4467                             <id provider="uniprot">419665</id>
4468                             <code>META3</code>
4469                             <scientific_name>Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280)</scientific_name>
4470                           </taxonomy>
4471                         </clade>
4472                       </clade>
4473                       <clade>
4474                         <name>a_34</name>
4475                         <taxonomy>
4476                           <id provider="uniprot">2184</id>
4477                           <scientific_name>Methanococcus</scientific_name>
4478                           <rank>genus</rank>
4479                         </taxonomy>
4480                         <clade>
4481                           <name>METMP</name>
4482                           <taxonomy>
4483                             <id provider="uniprot">39152</id>
4484                             <code>METMP</code>
4485                             <scientific_name>Methanococcus maripaludis</scientific_name>
4486                             <synonym>Methanococcus deltae</synonym>
4487                             <rank>species</rank>
4488                           </taxonomy>
4489                         </clade>
4490                         <clade>
4491                           <name>METVS</name>
4492                           <taxonomy>
4493                             <id provider="uniprot">406327</id>
4494                             <code>METVS</code>
4495                             <scientific_name>Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224)</scientific_name>
4496                           </taxonomy>
4497                         </clade>
4498                       </clade>
4499                     </clade>
4500                     <clade>
4501                       <name>a_40</name>
4502                       <taxonomy>
4503                         <id provider="uniprot">2159</id>
4504                         <scientific_name>Methanobacteriaceae</scientific_name>
4505                         <rank>family</rank>
4506                       </taxonomy>
4507                       <clade>
4508                         <name>a_38</name>
4509                         <clade>
4510                           <name>METS3</name>
4511                           <taxonomy>
4512                             <id provider="uniprot">420247</id>
4513                             <code>METS3</code>
4514                             <scientific_name>Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861)</scientific_name>
4515                           </taxonomy>
4516                         </clade>
4517                         <clade>
4518                           <name>METST</name>
4519                           <taxonomy>
4520                             <id provider="uniprot">339860</id>
4521                             <code>METST</code>
4522                             <scientific_name>Methanosphaera stadtmanae (strain DSM 3091)</scientific_name>
4523                           </taxonomy>
4524                         </clade>
4525                       </clade>
4526                       <clade>
4527                         <name>METTH</name>
4528                         <taxonomy>
4529                           <id provider="uniprot">187420</id>
4530                           <code>METTH</code>
4531                           <scientific_name>Methanobacterium thermoautotrophicum</scientific_name>
4532                         </taxonomy>
4533                       </clade>
4534                     </clade>
4535                   </clade>
4536                   <clade>
4537                     <name>METKA</name>
4538                     <taxonomy>
4539                       <id provider="uniprot">2320</id>
4540                       <code>METKA</code>
4541                       <scientific_name>Methanopyrus kandleri</scientific_name>
4542                       <rank>species</rank>
4543                     </taxonomy>
4544                   </clade>
4545                 </clade>
4546               </clade>
4547               <clade>
4548                 <name>a_51</name>
4549                 <taxonomy>
4550                   <id provider="uniprot">2259</id>
4551                   <scientific_name>Thermococcaceae</scientific_name>
4552                   <rank>family</rank>
4553                 </taxonomy>
4554                 <clade>
4555                   <name>a_47</name>
4556                   <clade>
4557                     <name>PYRFU</name>
4558                     <taxonomy>
4559                       <id provider="uniprot">2261</id>
4560                       <code>PYRFU</code>
4561                       <scientific_name>Pyrococcus furiosus</scientific_name>
4562                       <rank>species</rank>
4563                     </taxonomy>
4564                   </clade>
4565                   <clade>
4566                     <taxonomy>
4567                       <id provider="uniprot">69014</id>
4568                       <code>PYRKO</code>
4569                       <scientific_name>Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1)</scientific_name>
4570                       <synonym>Thermococcus kodakaraensis (strain KOD1)</synonym>
4571                     </taxonomy>
4572                   </clade>
4573                 </clade>
4574                 <clade>
4575                   <name>a_50</name>
4576                   <taxonomy>
4577                     <id provider="uniprot">2260</id>
4578                     <scientific_name>Pyrococcus</scientific_name>
4579                     <rank>genus</rank>
4580                   </taxonomy>
4581                   <clade>
4582                     <name>PYRAB</name>
4583                     <taxonomy>
4584                       <id provider="uniprot">29292</id>
4585                       <code>PYRAB</code>
4586                       <scientific_name>Pyrococcus abyssi</scientific_name>
4587                       <rank>species</rank>
4588                     </taxonomy>
4589                   </clade>
4590                   <clade>
4591                     <name>PYRHO</name>
4592                     <taxonomy>
4593                       <id provider="uniprot">53953</id>
4594                       <code>PYRHO</code>
4595                       <scientific_name>Pyrococcus horikoshii</scientific_name>
4596                       <rank>species</rank>
4597                     </taxonomy>
4598                   </clade>
4599                 </clade>
4600               </clade>
4601             </clade>
4602             <clade>
4603               <name>a_55</name>
4604               <clade>
4605                 <name>NANEQ</name>
4606                 <taxonomy>
4607                   <id provider="uniprot">228908</id>
4608                   <code>NANEQ</code>
4609                   <scientific_name>Nanoarchaeum equitans (strain Kin4-M)</scientific_name>
4610                 </taxonomy>
4611               </clade>
4612               <clade>
4613                 <taxonomy>
4614                   <id provider="uniprot">436308</id>
4615                   <code>NITMS</code>
4616                   <scientific_name>Nitrosopumilus maritimus (strain SCM1)</scientific_name>
4617                 </taxonomy>
4618               </clade>
4619             </clade>
4620           </clade>
4621           <clade>
4622             <taxonomy>
4623               <id provider="uniprot">2301</id>
4624               <scientific_name>Thermoplasmatales</scientific_name>
4625               <rank>order</rank>
4626             </taxonomy>
4627             <clade>
4628               <name>a_59</name>
4629               <taxonomy>
4630                 <id provider="uniprot">2302</id>
4631                 <scientific_name>Thermoplasma</scientific_name>
4632                 <rank>genus</rank>
4633               </taxonomy>
4634               <clade>
4635                 <name>THEAC</name>
4636                 <taxonomy>
4637                   <id provider="uniprot">273075</id>
4638                   <code>THEAC</code>
4639                   <scientific_name>Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)</scientific_name>
4640                 </taxonomy>
4641               </clade>
4642               <clade>
4643                 <name>THEVO</name>
4644                 <taxonomy>
4645                   <id provider="uniprot">273116</id>
4646                   <code>THEVO</code>
4647                   <scientific_name>Thermoplasma volcanium (strain ATCC 51530 / DSM 4299 / IFO 15438 / JCM 9571 / GSS1)</scientific_name>
4648                 </taxonomy>
4649               </clade>
4650             </clade>
4651             <clade>
4652               <name>PICTO</name>
4653               <taxonomy>
4654                 <id provider="uniprot">263820</id>
4655                 <code>PICTO</code>
4656                 <scientific_name>Picrophilus torridus (strain ATCC 700027 / DSM 9790 / JCM 10055 / NBRC 100828)</scientific_name>
4657               </taxonomy>
4658             </clade>
4659           </clade>
4660         </clade>
4661         <clade>
4662           <name>a_93</name>
4663           <clade>
4664             <taxonomy>
4665               <id provider="uniprot">183924</id>
4666               <scientific_name>Thermoprotei</scientific_name>
4667               <rank>class</rank>
4668             </taxonomy>
4669             <clade>
4670               <name>a_83</name>
4671               <clade>
4672                 <name>a_81</name>
4673                 <clade>
4674                   <name>a_73</name>
4675                   <taxonomy>
4676                     <id provider="uniprot">2267</id>
4677                     <scientific_name>Thermoproteaceae</scientific_name>
4678                     <rank>family</rank>
4679                   </taxonomy>
4680                   <clade>
4681                     <name>a_71</name>
4682                     <clade>
4683                       <name>a_67</name>
4684                       <taxonomy>
4685                         <id provider="uniprot">2276</id>
4686                         <scientific_name>Pyrobaculum</scientific_name>
4687                         <rank>genus</rank>
4688                       </taxonomy>
4689                       <clade>
4690                         <name>a_65</name>
4691                         <clade>
4692                           <name>PYRAR</name>
4693                           <taxonomy>
4694                             <id provider="uniprot">340102</id>
4695                             <code>PYRAR</code>
4696                             <scientific_name>Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321)</scientific_name>
4697                           </taxonomy>
4698                         </clade>
4699                         <clade>
4700                           <name>PYRCJ</name>
4701                           <taxonomy>
4702                             <id provider="uniprot">410359</id>
4703                             <code>PYRCJ</code>
4704                             <scientific_name>Pyrobaculum calidifontis (strain JCM 11548 / VA1)</scientific_name>
4705                           </taxonomy>
4706                         </clade>
4707                       </clade>
4708                       <clade>
4709                         <name>PYRAE</name>
4710                         <taxonomy>
4711                           <id provider="uniprot">13773</id>
4712                           <code>PYRAE</code>
4713                           <scientific_name>Pyrobaculum aerophilum</scientific_name>
4714                           <rank>species</rank>
4715                         </taxonomy>
4716                       </clade>
4717                     </clade>
4718                     <clade>
4719                       <name>a_70</name>
4720                       <clade>
4721                         <name>PYRIL</name>
4722                         <taxonomy>
4723                           <id provider="uniprot">384616</id>
4724                           <code>PYRIL</code>
4725                           <scientific_name>Pyrobaculum islandicum (strain DSM 4184 / JCM 9189)</scientific_name>
4726                         </taxonomy>
4727                       </clade>
4728                       <clade>
4729                         <name>THENV</name>
4730                         <taxonomy>
4731                           <id provider="uniprot">444157</id>
4732                           <code>THENV</code>
4733                           <scientific_name>Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta)</scientific_name>
4734                         </taxonomy>
4735                       </clade>
4736                     </clade>
4737                   </clade>
4738                   <clade>
4739                     <taxonomy>
4740                       <id provider="uniprot">397948</id>
4741                       <code>CALMQ</code>
4742                       <scientific_name>Caldivirga maquilingensis (strain ATCC 700844 / DSMZ 13496 / JCM 10307 / IC-167)</scientific_name>
4743                     </taxonomy>
4744                   </clade>
4745                 </clade>
4746                 <clade>
4747                   <name>a_80</name>
4748                   <taxonomy>
4749                     <id provider="uniprot">118883</id>
4750                     <scientific_name>Sulfolobaceae</scientific_name>
4751                     <rank>family</rank>
4752                   </taxonomy>
4753                   <clade>
4754                     <name>a_78</name>
4755                     <taxonomy>
4756                       <id provider="uniprot">2284</id>
4757                       <scientific_name>Sulfolobus</scientific_name>
4758                       <rank>genus</rank>
4759                     </taxonomy>
4760                     <clade>
4761                       <name>a_76</name>
4762                       <clade>
4763                         <name>SULAC</name>
4764                         <taxonomy>
4765                           <id provider="uniprot">2285</id>
4766                           <code>SULAC</code>
4767                           <scientific_name>Sulfolobus acidocaldarius</scientific_name>
4768                           <rank>species</rank>
4769                         </taxonomy>
4770                       </clade>
4771                       <clade>
4772                         <name>SULTO</name>
4773                         <taxonomy>
4774                           <id provider="uniprot">273063</id>
4775                           <code>SULTO</code>
4776                           <scientific_name>Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)</scientific_name>
4777                         </taxonomy>
4778                       </clade>
4779                     </clade>
4780                     <clade>
4781                       <name>SULSO</name>
4782                       <taxonomy>
4783                         <id provider="uniprot">2287</id>
4784                         <code>SULSO</code>
4785                         <scientific_name>Sulfolobus solfataricus</scientific_name>
4786                         <rank>species</rank>
4787                       </taxonomy>
4788                     </clade>
4789                   </clade>
4790                   <clade>
4791                     <name>METS5</name>
4792                     <taxonomy>
4793                       <id provider="uniprot">399549</id>
4794                       <code>METS5</code>
4795                       <scientific_name>Metallosphaera sedula (strain ATCC 51363 / DSM 5348)</scientific_name>
4796                     </taxonomy>
4797                   </clade>
4798                 </clade>
4799               </clade>
4800               <clade>
4801                 <name>AERPE</name>
4802                 <taxonomy>
4803                   <id provider="uniprot">56636</id>
4804                   <code>AERPE</code>
4805                   <scientific_name>Aeropyrum pernix</scientific_name>
4806                   <rank>species</rank>
4807                 </taxonomy>
4808               </clade>
4809             </clade>
4810             <clade>
4811               <name>a_90</name>
4812               <clade>
4813                 <name>a_88</name>
4814                 <clade>
4815                   <name>a_86</name>
4816                   <clade>
4817                     <name>STAMF</name>
4818                     <taxonomy>
4819                       <id provider="uniprot">399550</id>
4820                       <code>STAMF</code>
4821                       <scientific_name>Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1)</scientific_name>
4822                     </taxonomy>
4823                   </clade>
4824                   <clade>
4825                     <name>THEPD</name>
4826                     <taxonomy>
4827                       <id provider="uniprot">368408</id>
4828                       <code>THEPD</code>
4829                       <scientific_name>Thermofilum pendens (strain Hrk 5)</scientific_name>
4830                     </taxonomy>
4831                   </clade>
4832                 </clade>
4833                 <clade>
4834                   <name>HYPBU</name>
4835                   <taxonomy>
4836                     <id provider="uniprot">415426</id>
4837                     <code>HYPBU</code>
4838                     <scientific_name>Hyperthermus butylicus (strain DSM 5456 / JCM 9403)</scientific_name>
4839                   </taxonomy>
4840                 </clade>
4841               </clade>
4842               <clade>
4843                 <name>IGNH4</name>
4844                 <taxonomy>
4845                   <id provider="uniprot">453591</id>
4846                   <code>IGNH4</code>
4847                   <scientific_name>Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125)</scientific_name>
4848                 </taxonomy>
4849               </clade>
4850             </clade>
4851           </clade>
4852           <clade>
4853             <taxonomy>
4854               <id provider="uniprot">374847</id>
4855               <code>KORCO</code>
4856               <scientific_name>Korarchaeum cryptofilum (strain OPF8)</scientific_name>
4857             </taxonomy>
4858           </clade>
4859         </clade>
4860       </clade>
4861     </clade>
4862     <clade>
4863       <taxonomy>
4864         <id provider="uniprot">2</id>
4865         <scientific_name>Bacteria</scientific_name>
4866         <rank>superkingdom</rank>
4867       </taxonomy>
4868       <clade>
4869         <name>b_278</name>
4870         <clade>
4871           <name>b_268</name>
4872           <clade>
4873             <name>b_226</name>
4874             <clade>
4875               <name>b_200</name>
4876               <clade>
4877                 <name>b_194</name>
4878                 <clade>
4879                   <name>b_104</name>
4880                   <clade>
4881                     <name>b_80</name>
4882                     <clade>
4883                       <taxonomy>
4884                         <id provider="uniprot">1224</id>
4885                         <scientific_name>Proteobacteria</scientific_name>
4886                         <rank>phylum</rank>
4887                       </taxonomy>
4888                       <clade>
4889                         <name>b_52</name>
4890                         <clade>
4891                           <name>b_44</name>
4892                           <clade>
4893                             <name>b_30</name>
4894                             <clade>
4895                               <name>b_24</name>
4896                               <taxonomy>
4897                                 <id provider="uniprot">1236</id>
4898                                 <scientific_name>Gammaproteobacteria</scientific_name>
4899                                 <rank>class</rank>
4900                               </taxonomy>
4901                               <clade>
4902                                 <name>b_16</name>
4903                                 <clade>
4904                                   <name>b_10</name>
4905                                   <taxonomy>
4906                                     <id provider="uniprot">543</id>
4907                                     <scientific_name>Enterobacteriaceae</scientific_name>
4908                                     <rank>family</rank>
4909                                   </taxonomy>
4910                                   <clade>
4911                                     <name>b_8</name>
4912                                     <clade>
4913                                       <name>b_6</name>
4914                                       <clade>
4915                                         <name>b_4</name>
4916                                         <clade>
4917                                           <name>b_2</name>
4918                                           <taxonomy>
4919                                             <id provider="uniprot">561</id>
4920                                             <scientific_name>Escherichia</scientific_name>
4921                                             <rank>genus</rank>
4922                                           </taxonomy>
4923                                           <clade>
4924                                             <name>ECOLI</name>
4925                                             <taxonomy>
4926                                               <id provider="uniprot">83333</id>
4927                                               <code>ECOLI</code>
4928                                               <scientific_name>Escherichia coli (strain K12)</scientific_name>
4929                                             </taxonomy>
4930                                           </clade>
4931                                           <clade>
4932                                             <name>ECO57</name>
4933                                             <taxonomy>
4934                                               <id provider="uniprot">83334</id>
4935                                               <code>ECO57</code>
4936                                               <scientific_name>Escherichia coli O157:H7</scientific_name>
4937                                             </taxonomy>
4938                                           </clade>
4939                                         </clade>
4940                                         <clade>
4941                                           <name>SHIFL</name>
4942                                           <taxonomy>
4943                                             <id provider="uniprot">623</id>
4944                                             <code>SHIFL</code>
4945                                             <scientific_name>Shigella flexneri</scientific_name>
4946                                             <rank>species</rank>
4947                                           </taxonomy>
4948                                         </clade>
4949                                       </clade>
4950                                       <clade>
4951                                         <name>SALTY</name>
4952                                         <taxonomy>
4953                                           <id provider="uniprot">90371</id>
4954                                           <code>SALTY</code>
4955                                           <scientific_name>Salmonella typhimurium</scientific_name>
4956                                         </taxonomy>
4957                                       </clade>
4958                                     </clade>
4959                                     <clade>
4960                                       <name>YERPE</name>
4961                                       <taxonomy>
4962                                         <id provider="uniprot">632</id>
4963                                         <code>YERPE</code>
4964                                         <scientific_name>Yersinia pestis</scientific_name>
4965                                         <rank>species</rank>
4966                                       </taxonomy>
4967                                     </clade>
4968                                   </clade>
4969                                   <clade>
4970                                     <name>PHOLU</name>
4971                                     <taxonomy>
4972                                       <id provider="uniprot">29488</id>
4973                                       <code>PHOLU</code>
4974                                       <scientific_name>Photorhabdus luminescens</scientific_name>
4975                                       <synonym>Xenorhabdus luminescens</synonym>
4976                                       <rank>species</rank>
4977                                     </taxonomy>
4978                                   </clade>
4979                                 </clade>
4980                                 <clade>
4981                                   <name>b_15</name>
4982                                   <clade>
4983                                     <name>b_13</name>
4984                                     <taxonomy>
4985                                       <id provider="uniprot">641</id>
4986                                       <scientific_name>Vibrionaceae</scientific_name>
4987                                       <rank>family</rank>
4988                                     </taxonomy>
4989                                     <clade>
4990                                       <name>PHOPR</name>
4991                                       <taxonomy>
4992                                         <id provider="uniprot">74109</id>
4993                                         <code>PHOPR</code>
4994                                         <scientific_name>Photobacterium profundum</scientific_name>
4995                                         <synonym>Photobacterium sp. (strain SS9)</synonym>
4996                                         <rank>species</rank>
4997                                       </taxonomy>
4998                                     </clade>
4999                                     <clade>
5000                                       <name>VIBCH</name>
5001                                       <taxonomy>
5002                                         <id provider="uniprot">666</id>
5003                                         <code>VIBCH</code>
5004                                         <scientific_name>Vibrio cholerae</scientific_name>
5005                                         <rank>species</rank>
5006                                       </taxonomy>
5007                                     </clade>
5008                                   </clade>
5009                                   <clade>
5010                                     <name>SHEDO</name>
5011                                     <taxonomy>
5012                                       <id provider="uniprot">318161</id>
5013                                       <code>SHEDO</code>
5014                                       <scientific_name>Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013)</scientific_name>
5015                                     </taxonomy>
5016                                   </clade>
5017                                 </clade>
5018                               </clade>
5019                               <clade>
5020                                 <name>b_23</name>
5021                                 <clade>
5022                                   <name>b_21</name>
5023                                   <taxonomy>
5024                                     <id provider="uniprot">286</id>
5025                                     <scientific_name>Pseudomonas</scientific_name>
5026                                     <rank>genus</rank>
5027                                   </taxonomy>
5028                                   <clade>
5029                                     <name>b_19</name>
5030                                     <clade>
5031                                       <name>PSEF5</name>
5032                                       <taxonomy>
5033                                         <id provider="uniprot">220664</id>
5034                                         <code>PSEF5</code>
5035                                         <scientific_name>Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477)</scientific_name>
5036                                       </taxonomy>
5037                                     </clade>
5038                                     <clade>
5039                                       <name>PSEPF</name>
5040                                       <taxonomy>
5041                                         <id provider="uniprot">205922</id>
5042                                         <code>PSEPF</code>
5043                                         <scientific_name>Pseudomonas fluorescens (strain Pf0-1)</scientific_name>
5044                                       </taxonomy>
5045                                     </clade>
5046                                   </clade>
5047                                   <clade>
5048                                     <name>PSEAE</name>
5049                                     <taxonomy>
5050                                       <id provider="uniprot">287</id>
5051                                       <code>PSEAE</code>
5052                                       <scientific_name>Pseudomonas aeruginosa</scientific_name>
5053                                       <rank>species</rank>
5054                                     </taxonomy>
5055                                   </clade>
5056                                 </clade>
5057                                 <clade>
5058                                   <name>CHRSD</name>
5059                                   <taxonomy>
5060                                     <id provider="uniprot">290398</id>
5061                                     <code>CHRSD</code>
5062                                     <scientific_name>Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768)</scientific_name>
5063                                   </taxonomy>
5064                                 </clade>
5065                               </clade>
5066                             </clade>
5067                             <clade>
5068                               <name>b_29</name>
5069                               <taxonomy>
5070                                 <id provider="uniprot">28216</id>
5071                                 <scientific_name>Betaproteobacteria</scientific_name>
5072                                 <rank>class</rank>
5073                               </taxonomy>
5074                               <clade>
5075                                 <name>DECAR</name>
5076                                 <taxonomy>
5077                                   <id provider="uniprot">159087</id>
5078                                   <code>DECAR</code>
5079                                   <scientific_name>Dechloromonas aromatica (strain RCB)</scientific_name>
5080                                 </taxonomy>
5081                               </clade>
5082                               <clade>
5083                                 <name>RALME</name>
5084                                 <taxonomy>
5085                                   <id provider="uniprot">266264</id>
5086                                   <code>RALME</code>
5087                                   <scientific_name>Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839)</scientific_name>
5088                                 </taxonomy>
5089                               </clade>
5090                             </clade>
5091                           </clade>
5092                           <clade>
5093                             <name>b_43</name>
5094                             <clade>
5095                               <name>b_41</name>
5096                               <clade>
5097                                 <name>b_35</name>
5098                                 <taxonomy>
5099                                   <id provider="uniprot">28216</id>
5100                                   <scientific_name>Betaproteobacteria</scientific_name>
5101                                   <rank>class</rank>
5102                                 </taxonomy>
5103                                 <clade>
5104                                   <name>b_33</name>
5105                                   <taxonomy>
5106                                     <id provider="uniprot">206379</id>
5107                                     <scientific_name>Nitrosomonadaceae</scientific_name>
5108                                     <rank>family</rank>
5109                                   </taxonomy>
5110                                   <clade>
5111                                     <name>NITEU</name>
5112                                     <taxonomy>
5113                                       <id provider="uniprot">915</id>
5114                                       <code>NITEU</code>
5115                                       <scientific_name>Nitrosomonas europaea</scientific_name>
5116                                       <rank>species</rank>
5117                                     </taxonomy>
5118                                   </clade>
5119                                   <clade>
5120                                     <name>NITMU</name>
5121                                     <taxonomy>
5122                                       <id provider="uniprot">323848</id>
5123                                       <code>NITMU</code>
5124                                       <scientific_name>Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849)</scientific_name>
5125                                     </taxonomy>
5126                                   </clade>
5127                                 </clade>
5128                                 <clade>
5129                                   <name>THIDE</name>
5130                                   <taxonomy>
5131                                     <id provider="uniprot">36861</id>
5132                                     <code>THIDE</code>
5133                                     <scientific_name>Thiobacillus denitrificans</scientific_name>
5134                                     <rank>species</rank>
5135                                   </taxonomy>
5136                                 </clade>
5137                               </clade>
5138                               <clade>
5139                                 <name>b_40</name>
5140                                 <taxonomy>
5141                                   <id provider="uniprot">135613</id>
5142                                   <scientific_name>Chromatiales</scientific_name>
5143                                   <rank>order</rank>
5144                                 </taxonomy>
5145                                 <clade>
5146                                   <name>b_38</name>
5147                                   <taxonomy>
5148                                     <id provider="uniprot">72276</id>
5149                                     <scientific_name>Ectothiorhodospiraceae</scientific_name>
5150                                     <common_name>purple sulfur bacteria</common_name>
5151                                     <rank>family</rank>
5152                                   </taxonomy>
5153                                   <clade>
5154                                     <name>ALHEH</name>
5155                                     <taxonomy>
5156                                       <id provider="uniprot">187272</id>
5157                                       <code>ALHEH</code>
5158                                       <scientific_name>Alkalilimnicola ehrlichei (strain MLHE-1)</scientific_name>
5159                                     </taxonomy>
5160                                   </clade>
5161                                   <clade>
5162                                     <name>HALHL</name>
5163                                     <taxonomy>
5164                                       <id provider="uniprot">349124</id>
5165                                       <code>HALHL</code>
5166                                       <scientific_name>Halorhodospira halophila (strain DSM 244 / SL1)</scientific_name>
5167                                       <synonym>Ectothiorhodospira halophila (strain DSM 244 / SL1)</synonym>
5168                                     </taxonomy>
5169                                   </clade>
5170                                 </clade>
5171                                 <clade>
5172                                   <name>NITOC</name>
5173                                   <taxonomy>
5174                                     <id provider="uniprot">323261</id>
5175                                     <code>NITOC</code>
5176                                     <scientific_name>Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848)</scientific_name>
5177                                   </taxonomy>
5178                                 </clade>
5179                               </clade>
5180                             </clade>
5181                             <clade>
5182                               <name>THICR</name>
5183                               <taxonomy>
5184                                 <id provider="uniprot">317025</id>
5185                                 <code>THICR</code>
5186                                 <scientific_name>Thiomicrospira crunogena (strain XCL-2)</scientific_name>
5187                               </taxonomy>
5188                             </clade>
5189                           </clade>
5190                         </clade>
5191                         <clade>
5192                           <name>b_51</name>
5193                           <taxonomy>
5194                             <id provider="uniprot">1236</id>
5195                             <scientific_name>Gammaproteobacteria</scientific_name>
5196                             <rank>class</rank>
5197                           </taxonomy>
5198                           <clade>
5199                             <name>b_47</name>
5200                             <clade>
5201                               <name>IDILO</name>
5202                               <taxonomy>
5203                                 <id provider="uniprot">135577</id>
5204                                 <code>IDILO</code>
5205                                 <scientific_name>Idiomarina loihiensis</scientific_name>
5206                                 <rank>species</rank>
5207                               </taxonomy>
5208                             </clade>
5209                             <clade>
5210                               <name>LEGPN</name>
5211                               <taxonomy>
5212                                 <id provider="uniprot">446</id>
5213                                 <code>LEGPN</code>
5214                                 <scientific_name>Legionella pneumophila</scientific_name>
5215                                 <rank>species</rank>
5216                               </taxonomy>
5217                             </clade>
5218                           </clade>
5219                           <clade>
5220                             <name>b_50</name>
5221                             <taxonomy>
5222                               <id provider="uniprot">32033</id>
5223                               <scientific_name>Xanthomonadaceae</scientific_name>
5224                               <rank>family</rank>
5225                             </taxonomy>
5226                             <clade>
5227                               <name>XANAC</name>
5228                               <taxonomy>
5229                                 <id provider="uniprot">92829</id>
5230                                 <code>XANAC</code>
5231                                 <scientific_name>Xanthomonas axonopodis pv. citri</scientific_name>
5232                                 <common_name>Citrus canker</common_name>
5233                               </taxonomy>
5234                             </clade>
5235                             <clade>
5236                               <name>XYLFT</name>
5237                               <taxonomy>
5238                                 <id provider="uniprot">183190</id>
5239                                 <code>XYLFT</code>
5240                                 <scientific_name>Xylella fastidiosa (strain Temecula1 / ATCC 700964)</scientific_name>
5241                               </taxonomy>
5242                             </clade>
5243                           </clade>
5244                         </clade>
5245                       </clade>
5246                       <clade>
5247                         <name>b_71</name>
5248                         <taxonomy>
5249                           <id provider="uniprot">28211</id>
5250                           <scientific_name>Alphaproteobacteria</scientific_name>
5251                           <rank>class</rank>
5252                         </taxonomy>
5253                         <clade>
5254                           <name>b_67</name>
5255                           <clade>
5256                             <name>b_65</name>
5257                             <clade>
5258                               <name>b_61</name>
5259                               <taxonomy>
5260                                 <id provider="uniprot">356</id>
5261                                 <scientific_name>Rhizobiales</scientific_name>
5262                                 <rank>order</rank>
5263                               </taxonomy>
5264                               <clade>
5265                                 <name>b_57</name>
5266                                 <taxonomy>
5267                                   <id provider="uniprot">227290</id>
5268                                   <scientific_name>Rhizobium/Agrobacterium group</scientific_name>
5269                                 </taxonomy>
5270                                 <clade>
5271                                   <name>AGRT5</name>
5272                                   <taxonomy>
5273                                     <id provider="uniprot">176299</id>
5274                                     <code>AGRT5</code>
5275                                     <scientific_name>Agrobacterium tumefaciens (strain C58 / ATCC 33970)</scientific_name>
5276                                   </taxonomy>
5277                                 </clade>
5278                                 <clade>
5279                                   <name>RHIEC</name>
5280                                   <taxonomy>
5281                                     <id provider="uniprot">347834</id>
5282                                     <code>RHIEC</code>
5283                                     <scientific_name>Rhizobium etli (strain CFN 42 / ATCC 51251)</scientific_name>
5284                                   </taxonomy>
5285                                 </clade>
5286                               </clade>
5287                               <clade>
5288                                 <name>b_60</name>
5289                                 <taxonomy>
5290                                   <id provider="uniprot">41294</id>
5291                                   <scientific_name>Bradyrhizobiaceae</scientific_name>
5292                                   <rank>family</rank>
5293                                 </taxonomy>
5294                                 <clade>
5295                                   <name>BRAJA</name>
5296                                   <taxonomy>
5297                                     <id provider="uniprot">375</id>
5298                                     <code>BRAJA</code>
5299                                     <scientific_name>Bradyrhizobium japonicum</scientific_name>
5300                                     <rank>species</rank>
5301                                   </taxonomy>
5302                                 </clade>
5303                                 <clade>
5304                                   <name>RHOPT</name>
5305                                   <taxonomy>
5306                                     <id provider="uniprot">395960</id>
5307                                     <code>RHOPT</code>
5308                                     <scientific_name>Rhodopseudomonas palustris (strain TIE-1)</scientific_name>
5309                                   </taxonomy>
5310                                 </clade>
5311                               </clade>
5312                             </clade>
5313                             <clade>
5314                               <name>b_64</name>
5315                               <taxonomy>
5316                                 <id provider="uniprot">31989</id>
5317                                 <scientific_name>Rhodobacteraceae</scientific_name>
5318                                 <rank>family</rank>
5319                               </taxonomy>
5320                               <clade>
5321                                 <name>RHOS1</name>
5322                                 <taxonomy>
5323                                   <id provider="uniprot">349101</id>
5324                                   <code>RHOS1</code>
5325                                   <scientific_name>Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9)</scientific_name>
5326                                 </taxonomy>
5327                               </clade>
5328                               <clade>
5329                                 <name>ROSDO</name>
5330                                 <taxonomy>
5331                                   <id provider="uniprot">375451</id>
5332                                   <code>ROSDO</code>
5333                                   <scientific_name>Roseobacter denitrificans (strain ATCC 33942 / OCh 114)</scientific_name>
5334                                   <common_name>Erythrobacter sp. (strain OCh 114)</common_name>
5335                                   <synonym>Roseobacter denitrificans</synonym>
5336                                 </taxonomy>
5337                               </clade>
5338                             </clade>
5339                           </clade>
5340                           <clade>
5341                             <name>CAUCR</name>
5342                             <taxonomy>
5343                               <id provider="uniprot">155892</id>
5344                               <code>CAUCR</code>
5345                               <scientific_name>Caulobacter crescentus</scientific_name>
5346                               <synonym>Caulobacter vibrioides</synonym>
5347                               <rank>species</rank>
5348                             </taxonomy>
5349                           </clade>
5350                         </clade>
5351                         <clade>
5352                           <name>b_70</name>
5353                           <taxonomy>
5354                             <id provider="uniprot">204441</id>
5355                             <scientific_name>Rhodospirillales</scientific_name>
5356                             <rank>order</rank>
5357                           </taxonomy>
5358                           <clade>
5359                             <name>ACICY</name>
5360                             <taxonomy>
5361                               <id provider="uniprot">524</id>
5362                               <code>ACICY</code>
5363                               <scientific_name>Acidiphilium cryptum</scientific_name>
5364                               <rank>species</rank>
5365                             </taxonomy>
5366                           </clade>
5367                           <clade>
5368                             <name>RHORU</name>
5369                             <taxonomy>
5370                               <id provider="uniprot">1085</id>
5371                               <code>RHORU</code>
5372                               <scientific_name>Rhodospirillum rubrum</scientific_name>
5373                               <rank>species</rank>
5374                             </taxonomy>
5375                           </clade>
5376                         </clade>
5377                       </clade>
5378                     </clade>
5379                     <clade>
5380                       <name>b_79</name>
5381                       <clade>
5382                         <name>b_77</name>
5383                         <taxonomy>
5384                           <id provider="uniprot">1224</id>
5385                           <scientific_name>Proteobacteria</scientific_name>
5386                           <rank>phylum</rank>
5387                         </taxonomy>
5388                         <clade>
5389                           <name>b_75</name>
5390                           <taxonomy>
5391                             <id provider="uniprot">712</id>
5392                             <scientific_name>Pasteurellaceae</scientific_name>
5393                             <rank>family</rank>
5394                           </taxonomy>
5395                           <clade>
5396                             <name>HAEIN</name>
5397                             <taxonomy>
5398                               <id provider="uniprot">727</id>
5399                               <code>HAEIN</code>
5400                               <scientific_name>Haemophilus influenzae</scientific_name>
5401                               <rank>species</rank>
5402                             </taxonomy>
5403                           </clade>
5404                           <clade>
5405                             <name>PASMU</name>
5406                             <taxonomy>
5407                               <id provider="uniprot">747</id>
5408                               <code>PASMU</code>
5409                               <scientific_name>Pasteurella multocida</scientific_name>
5410                               <rank>species</rank>
5411                             </taxonomy>
5412                           </clade>
5413                         </clade>
5414                         <clade>
5415                           <name>NEIME</name>
5416                           <taxonomy>
5417                             <id provider="uniprot">487</id>
5418                             <code>NEIME</code>
5419                             <scientific_name>Neisseria meningitidis</scientific_name>
5420                             <rank>species</rank>
5421                           </taxonomy>
5422                         </clade>
5423                       </clade>
5424                       <clade>
5425                         <name>ACIFE</name>
5426                         <taxonomy>
5427                           <id provider="uniprot">905</id>
5428                           <code>ACIFE</code>
5429                           <scientific_name>Acidaminococcus fermentans</scientific_name>
5430                           <rank>species</rank>
5431                         </taxonomy>
5432                       </clade>
5433                     </clade>
5434                   </clade>
5435                   <clade>
5436                     <name>b_103</name>
5437                     <clade>
5438                       <name>b_91</name>
5439                       <taxonomy>
5440                         <id provider="uniprot">28221</id>
5441                         <scientific_name>Deltaproteobacteria</scientific_name>
5442                         <rank>class</rank>
5443                       </taxonomy>
5444                       <clade>
5445                         <name>b_87</name>
5446                         <clade>
5447                           <name>b_83</name>
5448                           <clade>
5449                             <name>DESPS</name>
5450                             <taxonomy>
5451                               <id provider="uniprot">84980</id>
5452                               <code>DESPS</code>
5453                               <scientific_name>Desulfotalea psychrophila</scientific_name>
5454                               <rank>species</rank>
5455                             </taxonomy>
5456                           </clade>
5457                           <clade>
5458                             <name>DESDE</name>
5459                             <taxonomy>
5460                               <id provider="uniprot">876</id>
5461                               <code>DESDE</code>
5462                               <scientific_name>Desulfovibrio desulfuricans</scientific_name>
5463                               <rank>species</rank>
5464                             </taxonomy>
5465                           </clade>
5466                         </clade>
5467                         <clade>
5468                           <name>SYNAS</name>
5469                           <taxonomy>
5470                             <id provider="uniprot">56780</id>
5471                             <code>SYNAS</code>
5472                             <scientific_name>Syntrophus aciditrophicus (strain SB)</scientific_name>
5473                           </taxonomy>
5474                         </clade>
5475                       </clade>
5476                       <clade>
5477                         <name>b_90</name>
5478                         <taxonomy>
5479                           <id provider="uniprot">28231</id>
5480                           <scientific_name>Geobacter</scientific_name>
5481                           <rank>genus</rank>
5482                         </taxonomy>
5483                         <clade>
5484                           <name>GEOME</name>
5485                           <taxonomy>
5486                             <id provider="uniprot">28232</id>
5487                             <code>GEOME</code>
5488                             <scientific_name>Geobacter metallireducens</scientific_name>
5489                             <rank>species</rank>
5490                           </taxonomy>
5491                         </clade>
5492                         <clade>
5493                           <name>GEOSL</name>
5494                           <taxonomy>
5495                             <id provider="uniprot">35554</id>
5496                             <code>GEOSL</code>
5497                             <scientific_name>Geobacter sulfurreducens</scientific_name>
5498                             <rank>species</rank>
5499                           </taxonomy>
5500                         </clade>
5501                       </clade>
5502                     </clade>
5503                     <clade>
5504                       <name>b_102</name>
5505                       <clade>
5506                         <name>b_98</name>
5507                         <clade>
5508                           <name>b_94</name>
5509                           <taxonomy>
5510                             <id provider="uniprot">31</id>
5511                             <scientific_name>Myxococcaceae</scientific_name>
5512                             <rank>family</rank>
5513                           </taxonomy>
5514                           <clade>
5515                             <name>ANADE</name>
5516                             <taxonomy>
5517                               <id provider="uniprot">290397</id>
5518                               <code>ANADE</code>
5519                               <scientific_name>Anaeromyxobacter dehalogenans (strain 2CP-C)</scientific_name>
5520                             </taxonomy>
5521                           </clade>
5522                           <clade>
5523                             <name>MYXXA</name>
5524                             <taxonomy>
5525                               <id provider="uniprot">34</id>
5526                               <code>MYXXA</code>
5527                               <scientific_name>Myxococcus xanthus</scientific_name>
5528                               <rank>species</rank>
5529                             </taxonomy>
5530                           </clade>
5531                         </clade>
5532                         <clade>
5533                           <name>b_97</name>
5534                           <taxonomy>
5535                             <id provider="uniprot">57723</id>
5536                             <scientific_name>Acidobacteria</scientific_name>
5537                             <rank>phylum</rank>
5538                           </taxonomy>
5539                           <clade>
5540                             <name>ACIBL</name>
5541                             <taxonomy>
5542                               <id provider="uniprot">204669</id>
5543                               <code>ACIBL</code>
5544                               <scientific_name>Acidobacteria bacterium (strain Ellin345)</scientific_name>
5545                             </taxonomy>
5546                           </clade>
5547                           <clade>
5548                             <name>SOLUS</name>
5549                             <taxonomy>
5550                               <id provider="uniprot">332163</id>
5551                               <code>SOLUS</code>
5552                               <scientific_name>Solibacter usitatus</scientific_name>
5553                               <rank>species</rank>
5554                             </taxonomy>
5555                           </clade>
5556                         </clade>
5557                       </clade>
5558                       <clade>
5559                         <name>RHOBA</name>
5560                         <taxonomy>
5561                           <id provider="uniprot">265606</id>
5562                           <code>RHOBA</code>
5563                           <scientific_name>Rhodopirellula baltica</scientific_name>
5564                           <rank>species</rank>
5565                         </taxonomy>
5566                       </clade>
5567                     </clade>
5568                   </clade>
5569                 </clade>
5570                 <clade>
5571                   <name>b_193</name>
5572                   <clade>
5573                     <name>b_163</name>
5574                     <clade>
5575                       <name>b_133</name>
5576                       <clade>
5577                         <name>Chloroflexi &amp; Actinobacteria</name>
5578                         <clade>
5579                           <taxonomy>
5580                             <id provider="uniprot">200795</id>
5581                             <scientific_name>Chloroflexi</scientific_name>
5582                             <common_name>GNS bacteria</common_name>
5583                             <synonym>Thermomicrobia</synonym>
5584                             <rank>phylum</rank>
5585                           </taxonomy>
5586                           <clade>
5587                             <taxonomy>
5588                               <id provider="uniprot">32061</id>
5589                               <scientific_name>Chloroflexi (class)</scientific_name>
5590                               <synonym>Chloroflecales</synonym>
5591                               <synonym>Chloroflexus/Deinococcus group</synonym>
5592                               <rank>class</rank>
5593                             </taxonomy>
5594                             <clade>
5595                               <name>b_122</name>
5596                               <taxonomy>
5597                                 <id provider="uniprot">1106</id>
5598                                 <scientific_name>Chloroflexaceae</scientific_name>
5599                                 <common_name>filamentous anoxygenic phototrophic bacteria</common_name>
5600                                 <rank>family</rank>
5601                               </taxonomy>
5602                               <clade>
5603                                 <name>CHLAU</name>
5604                                 <taxonomy>
5605                                   <id provider="uniprot">1108</id>
5606                                   <code>CHLAU</code>
5607                                   <scientific_name>Chloroflexus aurantiacus</scientific_name>
5608                                   <rank>species</rank>
5609                                 </taxonomy>
5610                               </clade>
5611                               <clade>
5612                                 <taxonomy>
5613                                   <id provider="uniprot">383372</id>
5614                                   <code>ROSCS</code>
5615                                   <scientific_name>Roseiflexus castenholzii (strain DSM 13941 / HLO8)</scientific_name>
5616                                   <rank>species</rank>
5617                                 </taxonomy>
5618                               </clade>
5619                             </clade>
5620                             <clade>
5621                               <name>HERAU</name>
5622                               <taxonomy>
5623                                 <id provider="uniprot">65</id>
5624                                 <code>HERAU</code>
5625                                 <scientific_name>Herpetosiphon aurantiacus</scientific_name>
5626                                 <synonym>Herpetosiphon giganteus</synonym>
5627                                 <rank>species</rank>
5628                               </taxonomy>
5629                             </clade>
5630                           </clade>
5631                           <clade>
5632                             <taxonomy>
5633                               <id provider="uniprot">479434</id>
5634                               <code>SPHTD</code>
5635                               <scientific_name>Sphaerobacter thermophilus (strain DSM 20745 / S 6022)</scientific_name>
5636                               <rank>strain</rank>
5637                             </taxonomy>
5638                           </clade>
5639                         </clade>
5640                         <clade>
5641                           <taxonomy>
5642                             <id provider="uniprot">201174</id>
5643                             <scientific_name>Actinobacteria</scientific_name>
5644                             <rank>phylum</rank>
5645                           </taxonomy>
5646                           <clade>
5647                             <taxonomy>
5648                               <id provider="uniprot">2037</id>
5649                               <scientific_name>Actinomycetales</scientific_name>
5650                               <rank>order</rank>
5651                             </taxonomy>
5652                             <clade>
5653                               <name>b_115</name>
5654                               <clade>
5655                                 <name>KINRD</name>
5656                                 <taxonomy>
5657                                   <id provider="uniprot">266940</id>
5658                                   <code>KINRD</code>
5659                                   <scientific_name>Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216)</scientific_name>
5660                                 </taxonomy>
5661                               </clade>
5662                               <clade>
5663                                 <name>KOCRD</name>
5664                                 <taxonomy>
5665                                   <id provider="uniprot">378753</id>
5666                                   <code>KOCRD</code>
5667                                   <scientific_name>Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201)</scientific_name>
5668                                 </taxonomy>
5669                               </clade>
5670                               <clade>
5671                                 <name>STRCO</name>
5672                                 <taxonomy>
5673                                   <id provider="uniprot">1902</id>
5674                                   <code>STRCO</code>
5675                                   <scientific_name>Streptomyces coelicolor</scientific_name>
5676                                   <rank>species</rank>
5677                                 </taxonomy>
5678                               </clade>
5679                               <clade>
5680                                 <name>THEFY</name>
5681                                 <taxonomy>
5682                                   <id provider="uniprot">269800</id>
5683                                   <code>THEFY</code>
5684                                   <scientific_name>Thermobifida fusca (strain YX)</scientific_name>
5685                                 </taxonomy>
5686                               </clade>
5687                               <clade>
5688                                 <taxonomy>
5689                                   <id provider="uniprot">1032480</id>
5690                                   <code>MICPN</code>
5691                                   <scientific_name>Microlunatus phosphovorus (strain ATCC 700054 / DSM 10555 / JCM 9379 / NBRC 101784 / NCIMB 13414 / VKM Ac-1990 / NM-1)</scientific_name>
5692                                   <common_name>Microlunatus phosphovorus NM-1</common_name>
5693                                   <rank>strain</rank>
5694                                 </taxonomy>
5695                               </clade>
5696                             </clade>
5697                             <clade>
5698                               <taxonomy>
5699                                 <id provider="uniprot">85007</id>
5700                                 <scientific_name>Corynebacterineae</scientific_name>
5701                                 <rank>suborder</rank>
5702                               </taxonomy>
5703                               <clade>
5704                                 <taxonomy>
5705                                   <id provider="uniprot">1763</id>
5706                                   <scientific_name>Mycobacterium</scientific_name>
5707                                   <rank>genus</rank>
5708                                 </taxonomy>
5709                                 <clade>
5710                                   <name>MYCLE</name>
5711                                   <taxonomy>
5712                                     <id provider="uniprot">1769</id>
5713                                     <code>MYCLE</code>
5714                                     <scientific_name>Mycobacterium leprae</scientific_name>
5715                                     <rank>species</rank>
5716                                   </taxonomy>
5717                                 </clade>
5718                                 <clade>
5719                                   <name>MYCTU</name>
5720                                   <taxonomy>
5721                                     <id provider="uniprot">1773</id>
5722                                     <code>MYCTU</code>
5723                                     <scientific_name>Mycobacterium tuberculosis</scientific_name>
5724                                     <rank>species</rank>
5725                                   </taxonomy>
5726                                 </clade>
5727                               </clade>
5728                               <clade>
5729                                 <name>CORJK</name>
5730                                 <taxonomy>
5731                                   <id provider="uniprot">306537</id>
5732                                   <code>CORJK</code>
5733                                   <scientific_name>Corynebacterium jeikeium (strain K411)</scientific_name>
5734                                 </taxonomy>
5735                               </clade>
5736                               <clade>
5737                                 <taxonomy>
5738                                   <id provider="uniprot">632772</id>
5739                                   <code>RHOOB</code>
5740                                   <scientific_name>Rhodococcus opacus (strain B4)</scientific_name>
5741                                   <rank>strain</rank>
5742                                 </taxonomy>
5743                               </clade>
5744                             </clade>
5745                           </clade>
5746                           <clade>
5747                             <name>RUBXD</name>
5748                             <taxonomy>
5749                               <id provider="uniprot">266117</id>
5750                               <code>RUBXD</code>
5751                               <scientific_name>Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129)</scientific_name>
5752                             </taxonomy>
5753                           </clade>
5754                         </clade>
5755                       </clade>
5756                       <clade>
5757                         <name>b_132</name>
5758                         <taxonomy>
5759                           <id provider="uniprot">188787</id>
5760                           <scientific_name>Deinococci</scientific_name>
5761                           <rank>class</rank>
5762                         </taxonomy>
5763                         <clade>
5764                           <name>b_130</name>
5765                           <taxonomy>
5766                             <id provider="uniprot">1298</id>
5767                             <scientific_name>Deinococcus</scientific_name>
5768                             <rank>genus</rank>
5769                           </taxonomy>
5770                           <clade>
5771                             <name>DEIGD</name>
5772                             <taxonomy>
5773                               <id provider="uniprot">319795</id>
5774                               <code>DEIGD</code>
5775                               <scientific_name>Deinococcus geothermalis (strain DSM 11300)</scientific_name>
5776                             </taxonomy>
5777                           </clade>
5778                           <clade>
5779                             <name>DEIRA</name>
5780                             <taxonomy>
5781                               <id provider="uniprot">1299</id>
5782                               <code>DEIRA</code>
5783                               <scientific_name>Deinococcus radiodurans</scientific_name>
5784                               <rank>species</rank>
5785                             </taxonomy>
5786                           </clade>
5787                         </clade>
5788                         <clade>
5789                           <name>THETH</name>
5790                           <taxonomy>
5791                             <id provider="uniprot">274</id>
5792                             <code>THETH</code>
5793                             <scientific_name>Thermus thermophilus</scientific_name>
5794                             <rank>species</rank>
5795                           </taxonomy>
5796                         </clade>
5797                       </clade>
5798                     </clade>
5799                     <clade>
5800                       <name>b_162</name>
5801                       <taxonomy>
5802                         <id provider="uniprot">1117</id>
5803                         <scientific_name>Cyanobacteria</scientific_name>
5804                         <rank>phylum</rank>
5805                       </taxonomy>
5806                       <clade>
5807                         <name>b_154</name>
5808                         <clade>
5809                           <name>b_152</name>
5810                           <clade>
5811                             <name>b_146</name>
5812                             <clade>
5813                               <name>b_144</name>
5814                               <clade>
5815                                 <name>b_142</name>
5816                                 <clade>
5817                                   <name>b_138</name>
5818                                   <taxonomy>
5819                                     <id provider="uniprot">1162</id>
5820                                     <scientific_name>Nostocaceae</scientific_name>
5821                                     <rank>family</rank>
5822                                   </taxonomy>
5823                                   <clade>
5824                                     <name>b_136</name>
5825                                     <clade>
5826                                       <name>ANAVA</name>
5827                                       <taxonomy>
5828                                         <id provider="uniprot">1172</id>
5829                                         <code>ANAVA</code>
5830                                         <scientific_name>Anabaena variabilis</scientific_name>
5831                                         <rank>species</rank>
5832                                       </taxonomy>
5833                                     </clade>
5834                                     <clade>
5835                                       <name>NOSS7</name>
5836                                       <taxonomy>
5837                                         <id provider="uniprot">28072</id>
5838                                         <code>NOSS7</code>
5839                                         <scientific_name>Nostoc sp. (strain PCC 7524)</scientific_name>
5840                                         <rank>species</rank>
5841                                       </taxonomy>
5842                                     </clade>
5843                                   </clade>
5844                                   <clade>
5845                                     <name>NOSP7</name>
5846                                     <taxonomy>
5847                                       <id provider="uniprot">63737</id>
5848                                       <code>NOSP7</code>
5849                                       <scientific_name>Nostoc punctiforme (strain ATCC 29133 / PCC 73102)</scientific_name>
5850                                     </taxonomy>
5851                                   </clade>
5852                                 </clade>
5853                                 <clade>
5854                                   <name>ACAMR</name>
5855                                   <taxonomy>
5856                                     <id provider="uniprot">155978</id>
5857                                     <code>ACAMR</code>
5858                                     <scientific_name>Acaryochloris marina</scientific_name>
5859                                     <rank>species</rank>
5860                                   </taxonomy>
5861                                 </clade>
5862                               </clade>
5863                               <clade>
5864                                 <name>MICAN</name>
5865                                 <taxonomy>
5866                                   <id provider="uniprot">449447</id>
5867                                   <code>MICAN</code>
5868                                   <scientific_name>Microcystis aeruginosa (strain NIES-843)</scientific_name>
5869                                 </taxonomy>
5870                               </clade>
5871                             </clade>
5872                             <clade>
5873                               <name>TRIER</name>
5874                               <taxonomy>
5875                                 <id provider="uniprot">1206</id>
5876                                 <code>TRIER</code>
5877                                 <scientific_name>Trichodesmium erythraeum</scientific_name>
5878                                 <rank>species</rank>
5879                               </taxonomy>
5880                             </clade>
5881                           </clade>
5882                           <clade>
5883                             <name>b_149</name>
5884                             <taxonomy>
5885                               <id provider="uniprot">1118</id>
5886                               <scientific_name>Chroococcales</scientific_name>
5887                               <rank>order</rank>
5888                             </taxonomy>
5889                             <clade>
5890                               <name>SYNEL</name>
5891                               <taxonomy>
5892                                 <id provider="uniprot">32046</id>
5893                                 <code>SYNEL</code>
5894                                 <scientific_name>Synechococcus elongatus</scientific_name>
5895                                 <rank>species</rank>
5896                               </taxonomy>
5897                             </clade>
5898                             <clade>
5899                               <name>SYNY3</name>
5900                               <taxonomy>
5901                                 <id provider="uniprot">1148</id>
5902                                 <code>SYNY3</code>
5903                                 <scientific_name>Synechocystis sp. (strain PCC 6803)</scientific_name>
5904                                 <rank>species</rank>
5905                               </taxonomy>
5906                             </clade>
5907                           </clade>
5908                         </clade>
5909                         <clade>
5910                           <name>GLOVI</name>
5911                           <taxonomy>
5912                             <id provider="uniprot">33072</id>
5913                             <code>GLOVI</code>
5914                             <scientific_name>Gloeobacter violaceus</scientific_name>
5915                             <rank>species</rank>
5916                           </taxonomy>
5917                         </clade>
5918                       </clade>
5919                       <clade>
5920                         <name>b_161</name>
5921                         <clade>
5922                           <name>b_159</name>
5923                           <taxonomy>
5924                             <id provider="uniprot">1218</id>
5925                             <scientific_name>Prochlorococcus</scientific_name>
5926                             <rank>genus</rank>
5927                           </taxonomy>
5928                           <clade>
5929                             <name>b_157</name>
5930                             <clade>
5931                               <name>PROMA</name>
5932                               <taxonomy>
5933                                 <id provider="uniprot">1219</id>
5934                                 <code>PROMA</code>
5935                                 <scientific_name>Prochlorococcus marinus</scientific_name>
5936                                 <rank>species</rank>
5937                               </taxonomy>
5938                             </clade>
5939                             <clade>
5940                               <name>PROMP</name>
5941                               <taxonomy>
5942                                 <id provider="uniprot">59919</id>
5943                                 <code>PROMP</code>
5944                                 <scientific_name>Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4)</scientific_name>
5945                               </taxonomy>
5946                             </clade>
5947                           </clade>
5948                           <clade>
5949                             <name>PROMM</name>
5950                             <taxonomy>
5951                               <id provider="uniprot">74547</id>
5952                               <code>PROMM</code>
5953                               <scientific_name>Prochlorococcus marinus (strain MIT 9313)</scientific_name>
5954                             </taxonomy>
5955                           </clade>
5956                         </clade>
5957                         <clade>
5958                           <name>SYNS3</name>
5959                           <taxonomy>
5960                             <id provider="uniprot">64471</id>
5961                             <code>SYNS3</code>
5962                             <scientific_name>Synechococcus sp. (strain CC9311)</scientific_name>
5963                             <rank>species</rank>
5964                           </taxonomy>
5965                         </clade>
5966                       </clade>
5967                     </clade>
5968                   </clade>
5969                   <clade>
5970                     <name>b_192</name>
5971                     <clade>
5972                       <name>b_190</name>
5973                       <clade>
5974                         <name>b_178</name>
5975                         <clade>
5976                           <name>b_176</name>
5977                           <taxonomy>
5978                             <id provider="uniprot">191412</id>
5979                             <scientific_name>Chlorobiaceae</scientific_name>
5980                             <rank>family</rank>
5981                           </taxonomy>
5982                           <clade>
5983                             <name>b_170</name>
5984                             <clade>
5985                               <name>b_166</name>
5986                               <clade>
5987                                 <name>CHLPB</name>
5988                                 <taxonomy>
5989                                   <id provider="uniprot">331678</id>
5990                                   <code>CHLPB</code>
5991                                   <scientific_name>Chlorobium phaeobacteroides (strain BS1)</scientific_name>
5992                                 </taxonomy>
5993                               </clade>
5994                               <clade>
5995                                 <name>PROAE</name>
5996                                 <taxonomy>
5997                                   <id provider="uniprot">1102</id>
5998                                   <code>PROAE</code>
5999                                   <scientific_name>Prosthecochloris aestuarii</scientific_name>
6000                                   <rank>species</rank>
6001                                 </taxonomy>
6002                               </clade>
6003                             </clade>
6004                             <clade>
6005                               <name>b_169</name>
6006                               <taxonomy>
6007                                 <id provider="uniprot">274493</id>
6008                                 <scientific_name>Chlorobium/Pelodictyon group</scientific_name>
6009                               </taxonomy>
6010                               <clade>
6011                                 <name>PELLU</name>
6012                                 <taxonomy>
6013                                   <id provider="uniprot">1100</id>
6014                                   <code>PELLU</code>
6015                                   <scientific_name>Pelodictyon luteolum</scientific_name>
6016                                   <rank>species</rank>
6017                                 </taxonomy>
6018                               </clade>
6019                               <clade>
6020                                 <name>PROVI</name>
6021                                 <taxonomy>
6022                                   <id provider="uniprot">290318</id>
6023                                   <code>PROVI</code>
6024                                   <scientific_name>Prosthecochloris vibrioformis (strain DSM 265)</scientific_name>
6025                                   <common_name>Chlorobium vibrioforme subsp. thiosulfatophilum (strain DSM 265)</common_name>
6026                                   <synonym>Chlorobium phaeovibrioides (strain DSM 265)</synonym>
6027                                 </taxonomy>
6028                               </clade>
6029                             </clade>
6030                           </clade>
6031                           <clade>
6032                             <name>b_175</name>
6033                             <clade>
6034                               <name>b_173</name>
6035                               <taxonomy>
6036                                 <id provider="uniprot">256319</id>
6037                                 <scientific_name>Chlorobaculum</scientific_name>
6038                                 <rank>genus</rank>
6039                               </taxonomy>
6040                               <clade>
6041                                 <name>CHLP8</name>
6042                                 <taxonomy>
6043                                   <id provider="uniprot">517417</id>
6044                                   <code>CHLP8</code>
6045                                   <scientific_name>Chlorobaculum parvum (strain NCIB 8327)</scientific_name>
6046                                   <synonym>Chlorobium vibrioforme subsp. thiosulfatophilum (strain DSM 263 / NCIB 8327)</synonym>
6047                                 </taxonomy>
6048                               </clade>
6049                               <clade>
6050                                 <name>CHLTE</name>
6051                                 <taxonomy>
6052                                   <id provider="uniprot">1097</id>
6053                                   <code>CHLTE</code>
6054                                   <scientific_name>Chlorobium tepidum</scientific_name>
6055                                   <rank>species</rank>
6056                                 </taxonomy>
6057                               </clade>
6058                             </clade>
6059                             <clade>
6060                               <name>CHLCH</name>
6061                               <taxonomy>
6062                                 <id provider="uniprot">340177</id>
6063                                 <code>CHLCH</code>
6064                                 <scientific_name>Chlorobium chlorochromatii (strain CaD3)</scientific_name>
6065                               </taxonomy>
6066                             </clade>
6067                           </clade>
6068                         </clade>
6069                         <clade>
6070                           <name>CHLTA</name>
6071                           <taxonomy>
6072                             <id provider="uniprot">315277</id>
6073                             <code>CHLTA</code>
6074                             <scientific_name>Chlamydia trachomatis serovar A (strain HAR-13 / ATCC VR-571B)</scientific_name>
6075                           </taxonomy>
6076                         </clade>
6077                       </clade>
6078                       <clade>
6079                         <name>b_189</name>
6080                         <taxonomy>
6081                           <id provider="uniprot">976</id>
6082                           <scientific_name>Bacteroidetes</scientific_name>
6083                           <rank>phylum</rank>
6084                         </taxonomy>
6085                         <clade>
6086                           <name>b_183</name>
6087                           <clade>
6088                             <name>b_181</name>
6089                             <taxonomy>
6090                               <id provider="uniprot">49546</id>
6091                               <scientific_name>Flavobacteriaceae</scientific_name>
6092                               <rank>family</rank>
6093                             </taxonomy>
6094                             <clade>
6095                               <name>FLAJO</name>
6096                               <taxonomy>
6097                                 <id provider="uniprot">986</id>
6098                                 <code>FLAJO</code>
6099                                 <scientific_name>Flavobacterium johnsoniae</scientific_name>
6100                                 <synonym>Cytophaga johnsonae</synonym>
6101                                 <rank>species</rank>
6102                               </taxonomy>
6103                             </clade>
6104                             <clade>
6105                               <name>GRAFK</name>
6106                               <taxonomy>
6107                                 <id provider="uniprot">411154</id>
6108                                 <code>GRAFK</code>
6109                                 <scientific_name>Gramella forsetii (strain KT0803)</scientific_name>
6110                               </taxonomy>
6111                             </clade>
6112                           </clade>
6113                           <clade>
6114                             <name>CYTH3</name>
6115                             <taxonomy>
6116                               <id provider="uniprot">269798</id>
6117                               <code>CYTH3</code>
6118                               <scientific_name>Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469)</scientific_name>
6119                             </taxonomy>
6120                           </clade>
6121                         </clade>
6122                         <clade>
6123                           <name>b_188</name>
6124                           <taxonomy>
6125                             <id provider="uniprot">171549</id>
6126                             <scientific_name>Bacteroidales</scientific_name>
6127                             <rank>order</rank>
6128                           </taxonomy>
6129                           <clade>
6130                             <name>b_186</name>
6131                             <taxonomy>
6132                               <id provider="uniprot">816</id>
6133                               <scientific_name>Bacteroides</scientific_name>
6134                               <rank>genus</rank>
6135                             </taxonomy>
6136                             <clade>
6137                               <name>BACFR</name>
6138                               <taxonomy>
6139                                 <id provider="uniprot">817</id>
6140                                 <code>BACFR</code>
6141                                 <scientific_name>Bacteroides fragilis</scientific_name>
6142                                 <rank>species</rank>
6143                               </taxonomy>
6144                             </clade>
6145                             <clade>
6146                               <name>BACTN</name>
6147                               <taxonomy>
6148                                 <id provider="uniprot">818</id>
6149                                 <code>BACTN</code>
6150                                 <scientific_name>Bacteroides thetaiotaomicron</scientific_name>
6151                                 <rank>species</rank>
6152                               </taxonomy>
6153                             </clade>
6154                           </clade>
6155                           <clade>
6156                             <name>PORGI</name>
6157                             <taxonomy>
6158                               <id provider="uniprot">837</id>
6159                               <code>PORGI</code>
6160                               <scientific_name>Porphyromonas gingivalis</scientific_name>
6161                               <synonym>Bacteroides gingivalis</synonym>
6162                               <rank>species</rank>
6163                             </taxonomy>
6164                           </clade>
6165                         </clade>
6166                       </clade>
6167                     </clade>
6168                     <clade>
6169                       <name>SALRD</name>
6170                       <taxonomy>
6171                         <id provider="uniprot">309807</id>
6172                         <code>SALRD</code>
6173                         <scientific_name>Salinibacter ruber (strain DSM 13855 / M31)</scientific_name>
6174                       </taxonomy>
6175                     </clade>
6176                   </clade>
6177                 </clade>
6178               </clade>
6179               <clade>
6180                 <name>b_199</name>
6181                 <clade>
6182                   <name>b_197</name>
6183                   <taxonomy>
6184                     <scientific_name>Verrucomicrobia</scientific_name>
6185                   </taxonomy>
6186                   <clade>
6187                     <name>AKKM8</name>
6188                     <taxonomy>
6189                       <id provider="uniprot">349741</id>
6190                       <code>AKKM8</code>
6191                       <scientific_name>Akkermansia muciniphila (strain ATCC BAA-835)</scientific_name>
6192                     </taxonomy>
6193                   </clade>
6194                   <clade>
6195                     <name>METI4</name>
6196                     <taxonomy>
6197                       <id provider="uniprot">481448</id>
6198                       <code>METI4</code>
6199                       <scientific_name>Methylacidiphilum infernorum (isolate V4)</scientific_name>
6200                       <synonym>Methylokorus infernorum (strain V4)</synonym>
6201                     </taxonomy>
6202                   </clade>
6203                 </clade>
6204                 <clade>
6205                   <name>LEPIC</name>
6206                   <taxonomy>
6207                     <id provider="uniprot">44275</id>
6208                     <code>LEPIC</code>
6209                     <scientific_name>Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni</scientific_name>
6210                   </taxonomy>
6211                 </clade>
6212               </clade>
6213             </clade>
6214             <clade>
6215               <name>b_225</name>
6216               <clade>
6217                 <name>b_219</name>
6218                 <taxonomy>
6219                   <id provider="uniprot">1239</id>
6220                   <scientific_name>Firmicutes</scientific_name>
6221                   <rank>phylum</rank>
6222                 </taxonomy>
6223                 <clade>
6224                   <name>b_213</name>
6225                   <clade>
6226                     <taxonomy>
6227                       <id provider="uniprot">1385</id>
6228                       <scientific_name>Bacillales</scientific_name>
6229                       <rank>order</rank>
6230                     </taxonomy>
6231                     <clade>
6232                       <taxonomy>
6233                         <id provider="uniprot">186817</id>
6234                         <scientific_name>Bacillaceae</scientific_name>
6235                         <rank>family</rank>
6236                       </taxonomy>
6237                       <clade>
6238                         <taxonomy>
6239                           <id provider="uniprot">1386</id>
6240                           <scientific_name>Bacillus</scientific_name>
6241                           <rank>genus</rank>
6242                         </taxonomy>
6243                         <clade>
6244                           <taxonomy>
6245                             <id provider="uniprot">86661</id>
6246                             <scientific_name>Bacillus cereus group</scientific_name>
6247                           </taxonomy>
6248                           <clade>
6249                             <name>BACAN</name>
6250                             <taxonomy>
6251                               <id provider="uniprot">1392</id>
6252                               <code>BACAN</code>
6253                               <scientific_name>Bacillus anthracis</scientific_name>
6254                               <rank>species</rank>
6255                             </taxonomy>
6256                           </clade>
6257                           <clade>
6258                             <taxonomy>
6259                               <id provider="uniprot">572264</id>
6260                               <code>BACC3</code>
6261                               <scientific_name>Bacillus cereus (strain 03BB102)</scientific_name>
6262                               <rank>strain</rank>
6263                             </taxonomy>
6264                           </clade>
6265                         </clade>
6266                         <clade>
6267                           <taxonomy>
6268                             <id provider="uniprot">1423</id>
6269                             <code>BACSU</code>
6270                             <scientific_name>Bacillus subtilis</scientific_name>
6271                             <rank>species</rank>
6272                           </taxonomy>
6273                         </clade>
6274                       </clade>
6275                       <clade>
6276                         <name>b_206</name>
6277                         <clade>
6278                           <name>BACHD</name>
6279                           <taxonomy>
6280                             <id provider="uniprot">86665</id>
6281                             <code>BACHD</code>
6282                             <scientific_name>Bacillus halodurans</scientific_name>
6283                             <rank>species</rank>
6284                           </taxonomy>
6285                         </clade>
6286                         <clade>
6287                           <name>GEOKA</name>
6288                           <taxonomy>
6289                             <id provider="uniprot">1462</id>
6290                             <code>GEOKA</code>
6291                             <scientific_name>Geobacillus kaustophilus</scientific_name>
6292                             <rank>species</rank>
6293                           </taxonomy>
6294                         </clade>
6295                       </clade>
6296                     </clade>
6297                     <clade>
6298                       <name>b_210</name>
6299                       <clade>
6300                         <name>LISMO</name>
6301                         <taxonomy>
6302                           <id provider="uniprot">1639</id>
6303                           <code>LISMO</code>
6304                           <scientific_name>Listeria monocytogenes</scientific_name>
6305                           <rank>species</rank>
6306                         </taxonomy>
6307                       </clade>
6308                       <clade>
6309                         <name>STAAU</name>
6310                         <taxonomy>
6311                           <id provider="uniprot">1280</id>
6312                           <code>STAAU</code>
6313                           <scientific_name>Staphylococcus aureus</scientific_name>
6314                           <rank>species</rank>
6315                         </taxonomy>
6316                       </clade>
6317                     </clade>
6318                   </clade>
6319                   <clade>
6320                     <name>CLOP1</name>
6321                     <taxonomy>
6322                       <id provider="uniprot">195103</id>
6323                       <code>CLOP1</code>
6324                       <scientific_name>Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A)</scientific_name>
6325                     </taxonomy>
6326                   </clade>
6327                 </clade>
6328                 <clade>
6329                   <name>Clostridia</name>
6330                   <taxonomy>
6331                     <id provider="uniprot">186801</id>
6332                     <scientific_name>Clostridia</scientific_name>
6333                     <rank>class</rank>
6334                   </taxonomy>
6335                   <clade>
6336                     <name>b_218</name>
6337                     <clade>
6338                       <name>b_216</name>
6339                       <taxonomy>
6340                         <id provider="uniprot">186814</id>
6341                         <scientific_name>Thermoanaerobacteriaceae</scientific_name>
6342                         <rank>family</rank>
6343                       </taxonomy>
6344                       <clade>
6345                         <name>CARHZ</name>
6346                         <taxonomy>
6347                           <id provider="uniprot">246194</id>
6348                           <code>CARHZ</code>
6349                           <scientific_name>Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008)</scientific_name>
6350                         </taxonomy>
6351                       </clade>
6352                       <clade>
6353                         <name>THETN</name>
6354                         <taxonomy>
6355                           <id provider="uniprot">119072</id>
6356                           <code>THETN</code>
6357                           <scientific_name>Thermoanaerobacter tengcongensis</scientific_name>
6358                           <rank>species</rank>
6359                         </taxonomy>
6360                       </clade>
6361                     </clade>
6362                     <clade>
6363                       <name>DESHA</name>
6364                       <taxonomy>
6365                         <id provider="uniprot">49338</id>
6366                         <code>DESHA</code>
6367                         <scientific_name>Desulfitobacterium hafniense</scientific_name>
6368                         <synonym>Desulfitobacterium frappieri</synonym>
6369                         <rank>species</rank>
6370                       </taxonomy>
6371                     </clade>
6372                   </clade>
6373                   <clade>
6374                     <name>EUBR3</name>
6375                     <taxonomy>
6376                       <id provider="uniprot">515619</id>
6377                       <code>EUBR3</code>
6378                       <scientific_name>Eubacterium rectale (strain ATCC 33656 / VPI 0990)</scientific_name>
6379                     </taxonomy>
6380                   </clade>
6381                 </clade>
6382               </clade>
6383               <clade>
6384                 <name>b_224</name>
6385                 <taxonomy>
6386                   <id provider="uniprot">188709</id>
6387                   <scientific_name>Thermotogaceae</scientific_name>
6388                   <rank>family</rank>
6389                 </taxonomy>
6390                 <clade>
6391                   <name>b_222</name>
6392                   <clade>
6393                     <name>FERNB</name>
6394                     <taxonomy>
6395                       <id provider="uniprot">381764</id>
6396                       <code>FERNB</code>
6397                       <scientific_name>Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1)</scientific_name>
6398                     </taxonomy>
6399                   </clade>
6400                   <clade>
6401                     <name>THELT</name>
6402                     <taxonomy>
6403                       <id provider="uniprot">416591</id>
6404                       <code>THELT</code>
6405                       <scientific_name>Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO)</scientific_name>
6406                     </taxonomy>
6407                   </clade>
6408                 </clade>
6409                 <clade>
6410                   <name>THEMA</name>
6411                   <taxonomy>
6412                     <id provider="uniprot">2336</id>
6413                     <code>THEMA</code>
6414                     <scientific_name>Thermotoga maritima</scientific_name>
6415                     <rank>species</rank>
6416                   </taxonomy>
6417                 </clade>
6418               </clade>
6419             </clade>
6420           </clade>
6421           <clade>
6422             <name>b_267</name>
6423             <clade>
6424               <name>b_263</name>
6425               <clade>
6426                 <name>b_251</name>
6427                 <clade>
6428                   <name>b_249</name>
6429                   <clade>
6430                     <name>b_245</name>
6431                     <clade>
6432                       <name>b_237</name>
6433                       <clade>
6434                         <name>b_233</name>
6435                         <taxonomy>
6436                           <id provider="uniprot">31969</id>
6437                           <scientific_name>Mollicutes</scientific_name>
6438                           <rank>class</rank>
6439                         </taxonomy>
6440                         <clade>
6441                           <name>b_231</name>
6442                           <clade>
6443                             <name>b_229</name>
6444                             <taxonomy>
6445                               <scientific_name>Mycoplasma</scientific_name>
6446                             </taxonomy>
6447                             <clade>
6448                               <name>MYCGE</name>
6449                               <taxonomy>
6450                                 <id provider="uniprot">2097</id>
6451                                 <code>MYCGE</code>
6452                                 <scientific_name>Mycoplasma genitalium</scientific_name>
6453                                 <rank>species</rank>
6454                               </taxonomy>
6455                             </clade>
6456                             <clade>
6457                               <name>MYCPN</name>
6458                               <taxonomy>
6459                                 <id provider="uniprot">2104</id>
6460                                 <code>MYCPN</code>
6461                                 <scientific_name>Mycoplasma pneumoniae</scientific_name>
6462                                 <rank>species</rank>
6463                               </taxonomy>
6464                             </clade>
6465                           </clade>
6466                           <clade>
6467                             <name>MESFL</name>
6468                             <taxonomy>
6469                               <id provider="uniprot">2151</id>
6470                               <code>MESFL</code>
6471                               <scientific_name>Mesoplasma florum</scientific_name>
6472                               <synonym>Acholeplasma florum</synonym>
6473                               <rank>species</rank>
6474                             </taxonomy>
6475                           </clade>
6476                         </clade>
6477                         <clade>
6478                           <name>UREPA</name>
6479                           <taxonomy>
6480                             <id provider="uniprot">134821</id>
6481                             <code>UREPA</code>
6482                             <scientific_name>Ureaplasma parvum</scientific_name>
6483                             <synonym>Ureaplasma urealyticum biotype 1</synonym>
6484                             <rank>species</rank>
6485                           </taxonomy>
6486                         </clade>
6487                       </clade>
6488                       <clade>
6489                         <name>b_236</name>
6490                         <taxonomy>
6491                           <id provider="uniprot">137</id>
6492                           <scientific_name>Spirochaetaceae</scientific_name>
6493                           <rank>family</rank>
6494                         </taxonomy>
6495                         <clade>
6496                           <name>BORBU</name>
6497                           <taxonomy>
6498                             <id provider="uniprot">139</id>
6499                             <code>BORBU</code>
6500                             <scientific_name>Borrelia burgdorferi</scientific_name>
6501                             <common_name>Lyme disease spirochete</common_name>
6502                             <rank>species</rank>
6503                           </taxonomy>
6504                         </clade>
6505                         <clade>
6506                           <name>TREPA</name>
6507                           <taxonomy>
6508                             <id provider="uniprot">160</id>
6509                             <code>TREPA</code>
6510                             <scientific_name>Treponema pallidum</scientific_name>
6511                             <rank>species</rank>
6512                           </taxonomy>
6513                         </clade>
6514                       </clade>
6515                     </clade>
6516                     <clade>
6517                       <name>b_244</name>
6518                       <clade>
6519                         <name>b_242</name>
6520                         <taxonomy>
6521                           <id provider="uniprot">1113537</id>
6522                           <scientific_name>Chlamydia/Chlamydophila group</scientific_name>
6523                         </taxonomy>
6524                         <clade>
6525                           <name>b_240</name>
6526                           <clade>
6527                             <name>CHLPN</name>
6528                             <taxonomy>
6529                               <id provider="uniprot">83558</id>
6530                               <code>CHLPN</code>
6531                               <scientific_name>Chlamydia pneumoniae</scientific_name>
6532                               <synonym>Chlamydophila pneumoniae</synonym>
6533                               <rank>species</rank>
6534                             </taxonomy>
6535                           </clade>
6536                           <clade>
6537                             <name>CHLFF</name>
6538                             <taxonomy>
6539                               <id provider="uniprot">264202</id>
6540                               <code>CHLFF</code>
6541                               <scientific_name>Chlamydophila felis (strain Fe/C-56)</scientific_name>
6542                             </taxonomy>
6543                           </clade>
6544                         </clade>
6545                         <clade>
6546                           <name>CHLMU</name>
6547                           <taxonomy>
6548                             <id provider="uniprot">83560</id>
6549                             <code>CHLMU</code>
6550                             <scientific_name>Chlamydia muridarum</scientific_name>
6551                             <rank>species</rank>
6552                           </taxonomy>
6553                         </clade>
6554                       </clade>
6555                       <clade>
6556                         <name>RICTY</name>
6557                         <taxonomy>
6558                           <id provider="uniprot">785</id>
6559                           <code>RICTY</code>
6560                           <scientific_name>Rickettsia typhi</scientific_name>
6561                           <rank>species</rank>
6562                         </taxonomy>
6563                       </clade>
6564                     </clade>
6565                   </clade>
6566                   <clade>
6567                     <taxonomy>
6568                       <id provider="uniprot">28211</id>
6569                       <scientific_name>Alphaproteobacteria</scientific_name>
6570                       <rank>class</rank>
6571                     </taxonomy>
6572                     <clade>
6573                       <taxonomy>
6574                         <id provider="uniprot">38323</id>
6575                         <code>BARHE</code>
6576                         <scientific_name>Bartonella henselae</scientific_name>
6577                         <synonym>Rochalimaea henselae</synonym>
6578                         <rank>species</rank>
6579                       </taxonomy>
6580                     </clade>
6581                     <clade>
6582                       <taxonomy>
6583                         <id provider="uniprot">198252</id>
6584                         <code>PELUB</code>
6585                         <scientific_name>Pelagibacter ubique</scientific_name>
6586                         <rank>species</rank>
6587                       </taxonomy>
6588                     </clade>
6589                     <clade>
6590                       <taxonomy>
6591                         <id provider="uniprot">780</id>
6592                         <scientific_name>Rickettsia</scientific_name>
6593                         <rank>genus</rank>
6594                       </taxonomy>
6595                       <clade>
6596                         <taxonomy>
6597                           <id provider="uniprot">452659</id>
6598                           <code>RICRO</code>
6599                           <scientific_name>Rickettsia rickettsii (strain Iowa)</scientific_name>
6600                           <rank>strain</rank>
6601                         </taxonomy>
6602                       </clade>
6603                       <clade>
6604                         <taxonomy>
6605                           <id provider="uniprot">391896</id>
6606                           <code>RICB8</code>
6607                           <scientific_name>Rickettsia bellii (strain OSU 85-389)</scientific_name>
6608                         </taxonomy>
6609                       </clade>
6610                     </clade>
6611                   </clade>
6612                 </clade>
6613                 <clade>
6614                   <name>FRATU</name>
6615                   <taxonomy>
6616                     <id provider="uniprot">263</id>
6617                     <code>FRATU</code>
6618                     <scientific_name>Francisella tularensis</scientific_name>
6619                     <rank>species</rank>
6620                   </taxonomy>
6621                 </clade>
6622               </clade>
6623               <clade>
6624                 <name>b_262</name>
6625                 <clade>
6626                   <name>b_260</name>
6627                   <clade>
6628                     <name>b_258</name>
6629                     <taxonomy>
6630                       <id provider="uniprot">186826</id>
6631                       <scientific_name>Lactobacillales</scientific_name>
6632                       <rank>order</rank>
6633                     </taxonomy>
6634                     <clade>
6635                       <name>b_256</name>
6636                       <taxonomy>
6637                         <id provider="uniprot">1300</id>
6638                         <scientific_name>Streptococcaceae</scientific_name>
6639                         <rank>family</rank>
6640                       </taxonomy>
6641                       <clade>
6642                         <name>b_254</name>
6643                         <taxonomy>
6644                           <id provider="uniprot">1301</id>
6645                           <scientific_name>Streptococcus</scientific_name>
6646                           <rank>genus</rank>
6647                         </taxonomy>
6648                         <clade>
6649                           <name>STRPN</name>
6650                           <taxonomy>
6651                             <id provider="uniprot">1313</id>
6652                             <code>STRPN</code>
6653                             <scientific_name>Streptococcus pneumoniae</scientific_name>
6654                             <rank>species</rank>
6655                           </taxonomy>
6656                         </clade>
6657                         <clade>
6658                           <name>STRPY</name>
6659                           <taxonomy>
6660                             <id provider="uniprot">1314</id>
6661                             <code>STRPY</code>
6662                             <scientific_name>Streptococcus pyogenes</scientific_name>
6663                             <rank>species</rank>
6664                           </taxonomy>
6665                         </clade>
6666                       </clade>
6667                       <clade>
6668                         <name>LACLA</name>
6669                         <taxonomy>
6670                           <id provider="uniprot">1360</id>
6671                           <code>LACLA</code>
6672                           <scientific_name>Lactococcus lactis subsp. lactis</scientific_name>
6673                           <synonym>Streptococcus lactis</synonym>
6674                           <rank>subspecies</rank>
6675                         </taxonomy>
6676                       </clade>
6677                     </clade>
6678                     <clade>
6679                       <name>LACAC</name>
6680                       <taxonomy>
6681                         <id provider="uniprot">1579</id>
6682                         <code>LACAC</code>
6683                         <scientific_name>Lactobacillus acidophilus</scientific_name>
6684                         <rank>species</rank>
6685                       </taxonomy>
6686                     </clade>
6687                   </clade>
6688                   <clade>
6689                     <name>BIFLO</name>
6690                     <taxonomy>
6691                       <id provider="uniprot">216816</id>
6692                       <code>BIFLO</code>
6693                       <scientific_name>Bifidobacterium longum</scientific_name>
6694                       <rank>species</rank>
6695                     </taxonomy>
6696                   </clade>
6697                 </clade>
6698                 <clade>
6699                   <name>FUSNU</name>
6700                   <taxonomy>
6701                     <id provider="uniprot">851</id>
6702                     <code>FUSNU</code>
6703                     <scientific_name>Fusobacterium nucleatum</scientific_name>
6704                     <rank>species</rank>
6705                   </taxonomy>
6706                 </clade>
6707               </clade>
6708             </clade>
6709             <clade>
6710               <name>b_266</name>
6711               <taxonomy>
6712                 <id provider="uniprot">61434</id>
6713                 <scientific_name>Dehalococcoides</scientific_name>
6714                 <rank>genus</rank>
6715               </taxonomy>
6716               <clade>
6717                 <name>DEHE1</name>
6718                 <taxonomy>
6719                   <id provider="uniprot">243164</id>
6720                   <code>DEHE1</code>
6721                   <scientific_name>Dehalococcoides ethenogenes (strain 195)</scientific_name>
6722                 </taxonomy>
6723               </clade>
6724               <clade>
6725                 <name>DEHSB</name>
6726                 <taxonomy>
6727                   <id provider="uniprot">216389</id>
6728                   <code>DEHSB</code>
6729                   <scientific_name>Dehalococcoides sp. (strain BAV1)</scientific_name>
6730                   <rank>species</rank>
6731                 </taxonomy>
6732               </clade>
6733             </clade>
6734           </clade>
6735         </clade>
6736         <clade>
6737           <name>b_277</name>
6738           <taxonomy>
6739             <id provider="uniprot">29547</id>
6740             <scientific_name>Epsilonproteobacteria</scientific_name>
6741             <rank>class</rank>
6742           </taxonomy>
6743           <clade>
6744             <name>b_273</name>
6745             <clade>
6746               <name>NITSB</name>
6747               <taxonomy>
6748                 <id provider="uniprot">387092</id>
6749                 <code>NITSB</code>
6750                 <scientific_name>Nitratiruptor sp. (strain SB155-2)</scientific_name>
6751                 <rank>species</rank>
6752               </taxonomy>
6753             </clade>
6754             <clade>
6755               <name>SULNB</name>
6756               <taxonomy>
6757                 <id provider="uniprot">387093</id>
6758                 <code>SULNB</code>
6759                 <scientific_name>Sulfurovum sp. (strain NBC37-1)</scientific_name>
6760                 <rank>species</rank>
6761               </taxonomy>
6762             </clade>
6763           </clade>
6764           <clade>
6765             <name>b_276</name>
6766             <taxonomy>
6767               <id provider="uniprot">213849</id>
6768               <scientific_name>Campylobacterales</scientific_name>
6769               <rank>order</rank>
6770             </taxonomy>
6771             <clade>
6772               <name>CAMJE</name>
6773               <taxonomy>
6774                 <id provider="uniprot">197</id>
6775                 <code>CAMJE</code>
6776                 <scientific_name>Campylobacter jejuni</scientific_name>
6777                 <rank>species</rank>
6778               </taxonomy>
6779             </clade>
6780             <clade>
6781               <name>HELPH</name>
6782               <taxonomy>
6783                 <id provider="uniprot">357544</id>
6784                 <code>HELPH</code>
6785                 <scientific_name>Helicobacter pylori (strain HPAG1)</scientific_name>
6786               </taxonomy>
6787             </clade>
6788           </clade>
6789         </clade>
6790       </clade>
6791       <clade>
6792         <name>AQUAE</name>
6793         <taxonomy>
6794           <id provider="uniprot">63363</id>
6795           <code>AQUAE</code>
6796           <scientific_name>Aquifex aeolicus</scientific_name>
6797           <rank>species</rank>
6798         </taxonomy>
6799       </clade>
6800     </clade>
6801   </clade>
6802 </phylogeny>
6803 </phyloxml>