forester/data/tol_146.xml

   1 <?xml version="1.0" encoding="UTF-8"?>
   2 <phyloxml xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.phyloxml.org http://www.phyloxml.org/1.10/phyloxml.xsd" xmlns="http://www.phyloxml.org">
   3 <phylogeny rooted="true" rerootable="false">
   4   <clade>
   5     <name>cellular organisms</name>
   6     <clade>
   7       <taxonomy>
   8         <scientific_name>Neomura</scientific_name>
   9       </taxonomy>
  10       <clade>
  11         <taxonomy>
  12           <id provider="uniprot">2759</id>
  13           <scientific_name>Eukaryota</scientific_name>
  14           <rank>superkingdom</rank>
  15         </taxonomy>
  16         <clade>
  17           <name>Unikonta</name>
  18           <clade>
  19             <name>Opisthokonta &amp; Apusozoa</name>
  20             <clade>
  21               <taxonomy>
  22                 <id provider="uniprot">33154</id>
  23                 <scientific_name>Opisthokonta</scientific_name>
  24                 <common_name>Fungi/Metazoa group</common_name>
  25               </taxonomy>
  26               <clade>
  27                 <taxonomy>
  28                   <scientific_name>Holozoa</scientific_name>
  29                 </taxonomy>
  30                 <clade>
  31                   <name>Choanoflagellatea &amp; Metazoa</name>
  32                   <clade>
  33                     <taxonomy>
  34                       <id provider="uniprot">33208</id>
  35                       <scientific_name>Metazoa</scientific_name>
  36                       <rank>kingdom</rank>
  37                     </taxonomy>
  38                     <clade>
  39                       <name>Eumetazoa</name>
  40                       <reference doi="10.1038/nature06614">
  41                       </reference>
  42                       <clade>
  43                         <name>Bilateria &amp; Cnidaria</name>
  44                         <clade>
  45                           <name>Bilateria</name>
  46                           <clade>
  47                             <name>Deuterostomia</name>
  48                             <reference doi="10.1038/nature04336">
  49                             </reference>
  50                             <clade>
  51                               <taxonomy>
  52                                 <id provider="uniprot">7711</id>
  53                                 <scientific_name>Chordata</scientific_name>
  54                                 <rank>phylum</rank>
  55                               </taxonomy>
  56                               <clade>
  57                                 <name>Urochordata &amp; Vertebrata</name>
  58                                 <clade>
  59                                   <taxonomy>
  60                                     <id provider="uniprot">7742</id>
  61                                     <scientific_name>Vertebrata</scientific_name>
  62                                   </taxonomy>
  63                                   <clade>
  64                                     <taxonomy>
  65                                       <id provider="uniprot">7776</id>
  66                                       <scientific_name>Gnathostomata</scientific_name>
  67                                       <common_name>jawed vertebrates</common_name>
  68                                       <rank>superclass</rank>
  69                                     </taxonomy>
  70                                     <clade>
  71                                       <taxonomy>
  72                                         <id provider="uniprot">117571</id>
  73                                         <scientific_name>Euteleostomi</scientific_name>
  74                                       </taxonomy>
  75                                       <clade>
  76                                         <name>Tetrapoda</name>
  77                                         <clade>
  78                                           <name>Amniota</name>
  79                                           <clade>
  80                                             <taxonomy>
  81                                               <id provider="uniprot">40674</id>
  82                                               <scientific_name>Mammalia</scientific_name>
  83                                               <rank>class</rank>
  84                                             </taxonomy>
  85                                             <clade>
  86                                               <name>Theria</name>
  87                                               <clade>
  88                                                 <taxonomy>
  89                                                   <id provider="uniprot">9347</id>
  90                                                   <scientific_name>Eutheria</scientific_name>
  91                                                   <common_name>Placental mammals</common_name>
  92                                                 </taxonomy>
  93                                                 <reference doi="10.1002/bies.200900053">
  94                                                   <desc>The new framework for understanding placental mammal evolution</desc>
  95                                                 </reference>
  96                                                 <clade>
  97                                                   <taxonomy>
  98                                                     <scientific_name>Boreoeutheria</scientific_name>
  99                                                     <synonym>Boreotheria</synonym>
 100                                                   </taxonomy>
 101                                                   <clade>
 102                                                     <taxonomy>
 103                                                       <id provider="uniprot">314146</id>
 104                                                       <scientific_name>Euarchontoglires</scientific_name>
 105                                                       <rank>superorder</rank>
 106                                                     </taxonomy>
 107                                                     <clade>
 108                                                       <taxonomy>
 109                                                         <scientific_name>Euarchonta</scientific_name>
 110                                                       </taxonomy>
 111                                                       <clade>
 112                                                         <taxonomy>
 113                                                           <id provider="uniprot">9443</id>
 114                                                           <scientific_name>Primates</scientific_name>
 115                                                           <rank>order</rank>
 116                                                         </taxonomy>
 117                                                         <clade>
 118                                                           <taxonomy>
 119                                                             <id provider="uniprot">376913</id>
 120                                                             <scientific_name>Haplorrhini</scientific_name>
 121                                                             <rank>suborder</rank>
 122                                                           </taxonomy>
 123                                                           <clade>
 124                                                             <taxonomy>
 125                                                               <id provider="uniprot">314293</id>
 126                                                               <scientific_name>Simiiformes</scientific_name>
 127                                                               <rank>infraorder</rank>
 128                                                             </taxonomy>
 129                                                             <clade>
 130                                                               <taxonomy>
 131                                                                 <id provider="uniprot">9526</id>
 132                                                                 <scientific_name>Catarrhini</scientific_name>
 133                                                               </taxonomy>
 134                                                               <clade>
 135                                                                 <taxonomy>
 136                                                                   <id provider="uniprot">314295</id>
 137                                                                   <scientific_name>Hominoidea</scientific_name>
 138                                                                   <common_name>Apes</common_name>
 139                                                                   <rank>superfamily</rank>
 140                                                                 </taxonomy>
 141                                                                 <clade>
 142                                                                   <taxonomy>
 143                                                                     <id provider="uniprot">9604</id>
 144                                                                     <scientific_name>Hominidae</scientific_name>
 145                                                                     <common_name>Great apes</common_name>
 146                                                                     <rank>family</rank>
 147                                                                   </taxonomy>
 148                                                                   <clade>
 149                                                                     <taxonomy>
 150                                                                       <id provider="uniprot">207598</id>
 151                                                                       <scientific_name>Homininae</scientific_name>
 152                                                                       <rank>subfamily</rank>
 153                                                                     </taxonomy>
 154                                                                     <clade>
 155                                                                       <taxonomy>
 156                                                                         <scientific_name>Hominini</scientific_name>
 157                                                                         <rank>tribe</rank>
 158                                                                       </taxonomy>
 159                                                                       <clade>
 160                                                                         <taxonomy>
 161                                                                           <id provider="uniprot">9606</id>
 162                                                                           <code>HUMAN</code>
 163                                                                           <scientific_name>Homo sapiens</scientific_name>
 164                                                                           <common_name>Human</common_name>
 165                                                                           <rank>species</rank>
 166                                                                           <uri>http://www.thehindu.com/multimedia/dynamic/00029/IN05_DARWIN_29896f.jpg</uri>
 167                                                                         </taxonomy>
 168                                                                       </clade>
 169                                                                       <clade>
 170                                                                         <taxonomy>
 171                                                                           <id provider="uniprot">9598</id>
 172                                                                           <code>PANTR</code>
 173                                                                           <scientific_name>Pan troglodytes</scientific_name>
 174                                                                           <common_name>Chimpanzee</common_name>
 175                                                                           <rank>species</rank>
 176                                                                           <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/8/8b/Schimpanse_zoo-leipig.jpg/800px-Schimpanse_zoo-leipig.jpg</uri>
 177                                                                         </taxonomy>
 178                                                                       </clade>
 179                                                                     </clade>
 180                                                                     <clade>
 181                                                                       <taxonomy>
 182                                                                         <id provider="uniprot">9595</id>
 183                                                                         <code>GORGO</code>
 184                                                                         <scientific_name>Gorilla gorilla gorilla</scientific_name>
 185                                                                         <common_name>Western lowland gorilla</common_name>
 186                                                                         <rank>subspecies</rank>
 187                                                                         <uri>http://upload.wikimedia.org/wikipedia/commons/c/c7/Stavenn_Gorilla_gorilla_00.jpg</uri>
 188                                                                       </taxonomy>
 189                                                                     </clade>
 190                                                                   </clade>
 191                                                                   <clade>
 192                                                                     <taxonomy>
 193                                                                       <id provider="uniprot">9601</id>
 194                                                                       <code>PONAB</code>
 195                                                                       <scientific_name>Pongo abelii</scientific_name>
 196                                                                       <common_name>Sumatran orangutan</common_name>
 197                                                                       <synonym>Pongo pygmaeus abelii</synonym>
 198                                                                       <rank>species</rank>
 199                                                                       <uri>http://www.ism.ac.jp/~hasegawa/photos/animal3b.jpg</uri>
 200                                                                     </taxonomy>
 201                                                                   </clade>
 202                                                                 </clade>
 203                                                                 <clade>
 204                                                                   <taxonomy>
 205                                                                     <id provider="uniprot">61853</id>
 206                                                                     <code>NOMLE</code>
 207                                                                     <scientific_name>Nomascus leucogenys</scientific_name>
 208                                                                     <common_name>Northern white-cheeked gibbon</common_name>
 209                                                                     <synonym>Hylobates leucogenys</synonym>
 210                                                                     <synonym>Hylobates concolor leucogenys</synonym>
 211                                                                     <rank>species</rank>
 212                                                                     <uri>http://uswest.ensembl.org/img/species/pic_Nomascus_leucogenys.png</uri>
 213                                                                     <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/1/1b/Hylobates_concolor2.jpg/450px-Hylobates_concolor2.jpg</uri>
 214                                                                   </taxonomy>
 215                                                                 </clade>
 216                                                               </clade>
 217                                                               <clade>
 218                                                                 <taxonomy>
 219                                                                   <id provider="uniprot">9528</id>
 220                                                                   <scientific_name>Cercopithecinae</scientific_name>
 221                                                                   <rank>subfamily</rank>
 222                                                                 </taxonomy>
 223                                                                 <clade>
 224                                                                   <taxonomy>
 225                                                                     <id provider="uniprot">9544</id>
 226                                                                     <code>MACMU</code>
 227                                                                     <scientific_name>Macaca mulatta</scientific_name>
 228                                                                     <common_name>Rhesus macaque</common_name>
 229                                                                     <rank>species</rank>
 230                                                                     <uri>http://www.our-pets.net/images/rhesus1.jpg</uri>
 231                                                                   </taxonomy>
 232                                                                 </clade>
 233                                                                 <clade>
 234                                                                   <taxonomy>
 235                                                                     <id provider="uniprot">9557</id>
 236                                                                     <code>PAPHA</code>
 237                                                                     <scientific_name>Papio hamadryas</scientific_name>
 238                                                                     <common_name>Hamadryas baboon</common_name>
 239                                                                     <rank>species</rank>
 240                                                                     <uri>http://pin.primate.wisc.edu/fs/sheets/images/227lg.jpg</uri>
 241                                                                   </taxonomy>
 242                                                                 </clade>
 243                                                               </clade>
 244                                                             </clade>
 245                                                             <clade>
 246                                                               <taxonomy>
 247                                                                 <id provider="uniprot">9483</id>
 248                                                                 <code>CALJA</code>
 249                                                                 <scientific_name>Callithrix jacchus</scientific_name>
 250                                                                 <common_name>White-tufted-ear marmoset</common_name>
 251                                                                 <synonym>Callithrix jacchus jacchus</synonym>
 252                                                                 <rank>species</rank>
 253                                                                 <uri>http://www.arthurgrosset.com/mammals/photos/caljac28086.jpg</uri>
 254                                                               </taxonomy>
 255                                                             </clade>
 256                                                           </clade>
 257                                                           <clade>
 258                                                             <taxonomy>
 259                                                               <id provider="uniprot">9478</id>
 260                                                               <code>TARSY</code>
 261                                                               <scientific_name>Tarsius syrichta</scientific_name>
 262                                                               <common_name>Philippine tarsier</common_name>
 263                                                               <rank>species</rank>
 264                                                               <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0408/1425.jpeg</uri>
 265                                                             </taxonomy>
 266                                                           </clade>
 267                                                         </clade>
 268                                                         <clade>
 269                                                           <taxonomy>
 270                                                             <id provider="uniprot">376911</id>
 271                                                             <scientific_name>Strepsirrhini</scientific_name>
 272                                                             <rank>suborder</rank>
 273                                                           </taxonomy>
 274                                                           <clade>
 275                                                             <taxonomy>
 276                                                               <id provider="uniprot">30608</id>
 277                                                               <code>MICMU</code>
 278                                                               <scientific_name>Microcebus murinus</scientific_name>
 279                                                               <common_name>Lesser mouse lemur</common_name>
 280                                                               <rank>species</rank>
 281                                                               <uri>http://daniel.montagnon.pagesperso-orange.fr/images/MicrocbusMurinus.jpg</uri>
 282                                                             </taxonomy>
 283                                                           </clade>
 284                                                           <clade>
 285                                                             <taxonomy>
 286                                                               <id provider="uniprot">30611</id>
 287                                                               <code>OTOGA</code>
 288                                                               <scientific_name>Otolemur garnettii</scientific_name>
 289                                                               <common_name>Garnett&apos;s greater bushbaby</common_name>
 290                                                               <synonym>Galago garnetti</synonym>
 291                                                               <synonym>Small-eared galago</synonym>
 292                                                               <synonym>Garnett&apos;s greater bushbaby</synonym>
 293                                                               <rank>species</rank>
 294                                                               <uri>http://www.mbweni.com/images/Mbweni%20Images/naturetrail/small-earedgalago.jpg</uri>
 295                                                             </taxonomy>
 296                                                           </clade>
 297                                                         </clade>
 298                                                       </clade>
 299                                                       <clade>
 300                                                         <taxonomy>
 301                                                           <id provider="uniprot">37347</id>
 302                                                           <code>TUPBE</code>
 303                                                           <scientific_name>Tupaia belangeri</scientific_name>
 304                                                           <common_name>Common tree shrew</common_name>
 305                                                           <synonym>Tupaia glis belangeri</synonym>
 306                                                           <rank>species</rank>
 307                                                           <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/4/44/Tupaia_belangeri.JPG/800px-Tupaia_belangeri.JPG</uri>
 308                                                         </taxonomy>
 309                                                       </clade>
 310                                                     </clade>
 311                                                     <clade>
 312                                                       <taxonomy>
 313                                                         <id provider="uniprot">314147</id>
 314                                                         <scientific_name>Glires</scientific_name>
 315                                                         <common_name>Rodents and rabbits</common_name>
 316                                                       </taxonomy>
 317                                                       <clade>
 318                                                         <taxonomy>
 319                                                           <id provider="uniprot">9989</id>
 320                                                           <scientific_name>Rodentia</scientific_name>
 321                                                           <rank>order</rank>
 322                                                         </taxonomy>
 323                                                         <clade>
 324                                                           <name>Ctenohystrica &amp; Mouse-related clade</name>
 325                                                           <reference doi="10.1186/1471-2148-9-71">
 326                                                             <desc>Rodent phylogeny revised: analysis of six nuclear genes from all major rodent clades.</desc>
 327                                                           </reference>
 328                                                           <clade>
 329                                                             <taxonomy>
 330                                                               <common_name>Mouse-related clade</common_name>
 331                                                             </taxonomy>
 332                                                             <clade>
 333                                                               <taxonomy>
 334                                                                 <id provider="uniprot">337687</id>
 335                                                                 <scientific_name>Muroidea</scientific_name>
 336                                                               </taxonomy>
 337                                                               <clade>
 338                                                                 <taxonomy>
 339                                                                   <id provider="uniprot">39107</id>
 340                                                                   <scientific_name>Murinae</scientific_name>
 341                                                                   <rank>subfamily</rank>
 342                                                                 </taxonomy>
 343                                                                 <clade>
 344                                                                   <taxonomy>
 345                                                                     <id provider="uniprot">10090</id>
 346                                                                     <code>MOUSE</code>
 347                                                                     <scientific_name>Mus musculus</scientific_name>
 348                                                                     <common_name>Mouse</common_name>
 349                                                                     <rank>species</rank>
 350                                                                     <uri>http://www.nsrl.ttu.edu/tmot1/images/mus_musc.jpg</uri>
 351                                                                   </taxonomy>
 352                                                                 </clade>
 353                                                                 <clade>
 354                                                                   <taxonomy>
 355                                                                     <id provider="uniprot">10116</id>
 356                                                                     <code>RAT</code>
 357                                                                     <scientific_name>Rattus norvegicus</scientific_name>
 358                                                                     <common_name>Rat</common_name>
 359                                                                     <rank>species</rank>
 360                                                                     <uri>http://upload.wikimedia.org/wikipedia/commons/0/01/Rattus_norvegicus_1.jpg</uri>
 361                                                                   </taxonomy>
 362                                                                 </clade>
 363                                                               </clade>
 364                                                               <clade>
 365                                                                 <taxonomy>
 366                                                                   <id provider="uniprot">10036</id>
 367                                                                   <code>MESAU</code>
 368                                                                   <scientific_name>Mesocricetus auratus</scientific_name>
 369                                                                   <common_name>Golden hamster</common_name>
 370                                                                   <rank>species</rank>
 371                                                                   <uri>http://www.dicts.info/img/ud/syrian_hamster.jpg</uri>
 372                                                                 </taxonomy>
 373                                                               </clade>
 374                                                             </clade>
 375                                                             <clade>
 376                                                               <taxonomy>
 377                                                                 <id provider="uniprot">10020</id>
 378                                                                 <code>DIPOR</code>
 379                                                                 <scientific_name>Dipodomys ordii</scientific_name>
 380                                                                 <common_name>Ord&apos;s kangaroo rat</common_name>
 381                                                                 <rank>species</rank>
 382                                                                 <uri>http://www.nsrl.ttu.edu/tmot1/images/dipoordi.jpg</uri>
 383                                                               </taxonomy>
 384                                                             </clade>
 385                                                           </clade>
 386                                                           <clade>
 387                                                             <taxonomy>
 388                                                               <id provider="uniprot">10141</id>
 389                                                               <code>CAVPO</code>
 390                                                               <scientific_name>Cavia porcellus</scientific_name>
 391                                                               <common_name>Guinea pig</common_name>
 392                                                               <rank>species</rank>
 393                                                               <uri>http://archive.vetknowledge.com/files/images/guinea-pig---tan.jpg</uri>
 394                                                             </taxonomy>
 395                                                           </clade>
 396                                                         </clade>
 397                                                         <clade>
 398                                                           <taxonomy>
 399                                                             <id provider="uniprot">43179</id>
 400                                                             <code>SPETR</code>
 401                                                             <scientific_name>Spermophilus tridecemlineatus</scientific_name>
 402                                                             <common_name>Thirteen-lined ground squirrel</common_name>
 403                                                             <synonym>Ictidomys tridecemlineatus</synonym>
 404                                                             <rank>species</rank>
 405                                                             <uri>http://animaldiversity.ummz.umich.edu/site/resources/phil_myers/ADW_mammals/Rodentia/Spermophilus4345.jpg/medium.jpg</uri>
 406                                                           </taxonomy>
 407                                                         </clade>
 408                                                       </clade>
 409                                                       <clade>
 410                                                         <taxonomy>
 411                                                           <id provider="uniprot">9975</id>
 412                                                           <scientific_name>Lagomorpha</scientific_name>
 413                                                           <common_name>Rabbits, hares, pikas</common_name>
 414                                                           <rank>order</rank>
 415                                                         </taxonomy>
 416                                                         <clade>
 417                                                           <taxonomy>
 418                                                             <id provider="uniprot">9978</id>
 419                                                             <code>OCHPR</code>
 420                                                             <scientific_name>Ochotona princeps</scientific_name>
 421                                                             <common_name>Southern American pika</common_name>
 422                                                             <rank>species</rank>
 423                                                             <uri>http://upload.wikimedia.org/wikipedia/commons/3/3b/Ochotona_princeps.jpg</uri>
 424                                                           </taxonomy>
 425                                                         </clade>
 426                                                         <clade>
 427                                                           <taxonomy>
 428                                                             <id provider="uniprot">9986</id>
 429                                                             <code>RABIT</code>
 430                                                             <scientific_name>Oryctolagus cuniculus</scientific_name>
 431                                                             <common_name>Rabbit</common_name>
 432                                                             <rank>species</rank>
 433                                                             <uri>http://greennature.com/gallery/farm-animal-pictures/albino_rabbit.jpg</uri>
 434                                                           </taxonomy>
 435                                                         </clade>
 436                                                       </clade>
 437                                                     </clade>
 438                                                   </clade>
 439                                                   <clade>
 440                                                     <taxonomy>
 441                                                       <id provider="uniprot">314145</id>
 442                                                       <scientific_name>Laurasiatheria</scientific_name>
 443                                                       <rank>superorder</rank>
 444                                                     </taxonomy>
 445                                                     <clade>
 446                                                       <taxonomy>
 447                                                         <scientific_name>Scrotifera</scientific_name>
 448                                                       </taxonomy>
 449                                                       <clade>
 450                                                         <name>Perissodactyla &amp; Cetartiodactyla &amp; Chiroptera</name>
 451                                                         <clade>
 452                                                           <name>Perissodactyla &amp; Cetartiodactyla</name>
 453                                                           <clade>
 454                                                             <taxonomy>
 455                                                               <id provider="uniprot">91561</id>
 456                                                               <scientific_name>Cetartiodactyla</scientific_name>
 457                                                               <common_name>Even-toed ungulates</common_name>
 458                                                             </taxonomy>
 459                                                             <clade>
 460                                                               <name>Cetruminantia &amp; Suina</name>
 461                                                               <clade>
 462                                                                 <taxonomy>
 463                                                                   <scientific_name>Cetruminantia</scientific_name>
 464                                                                 </taxonomy>
 465                                                                 <clade>
 466                                                                   <taxonomy>
 467                                                                     <id provider="uniprot">9895</id>
 468                                                                     <scientific_name>Bovidae</scientific_name>
 469                                                                     <rank>family</rank>
 470                                                                   </taxonomy>
 471                                                                   <clade>
 472                                                                     <taxonomy>
 473                                                                       <id provider="uniprot">9913</id>
 474                                                                       <code>BOVIN</code>
 475                                                                       <scientific_name>Bos taurus</scientific_name>
 476                                                                       <common_name>Bovine</common_name>
 477                                                                       <synonym>Bos bovis</synonym>
 478                                                                       <rank>species</rank>
 479                                                                       <uri>http://www.biopix.eu/photos/jcs-bos-taurus-(dansk-rodbroget-kvaeg)-22141.jpg</uri>
 480                                                                     </taxonomy>
 481                                                                   </clade>
 482                                                                   <clade>
 483                                                                     <taxonomy>
 484                                                                       <id provider="uniprot">9940</id>
 485                                                                       <code>SHEEP</code>
 486                                                                       <scientific_name>Ovis aries</scientific_name>
 487                                                                       <common_name>Sheep</common_name>
 488                                                                       <rank>species</rank>
 489                                                                       <uri>http://animaldiversity.ummz.umich.edu/site/resources/james_dowlinghealey/blacksheep.jpg/medium.jpg</uri>
 490                                                                     </taxonomy>
 491                                                                   </clade>
 492                                                                 </clade>
 493                                                                 <clade>
 494                                                                   <taxonomy>
 495                                                                     <id provider="uniprot">9721</id>
 496                                                                     <scientific_name>Cetacea</scientific_name>
 497                                                                     <common_name>Whales</common_name>
 498                                                                     <rank>order</rank>
 499                                                                   </taxonomy>
 500                                                                   <clade>
 501                                                                     <taxonomy>
 502                                                                       <id provider="uniprot">9771</id>
 503                                                                       <code>BALMU</code>
 504                                                                       <scientific_name>Balaenoptera musculus</scientific_name>
 505                                                                       <common_name>Blue whale</common_name>
 506                                                                       <rank>species</rank>
 507                                                                       <uri>http://2.bp.blogspot.com/_W90V87w3sr8/TT63uRT_U9I/AAAAAAAAAo8/to9O8zEeo7k/s1600/bluewhale.jpg</uri>
 508                                                                     </taxonomy>
 509                                                                   </clade>
 510                                                                   <clade>
 511                                                                     <taxonomy>
 512                                                                       <id provider="uniprot">9739</id>
 513                                                                       <code>TURTR</code>
 514                                                                       <scientific_name>Tursiops truncatus</scientific_name>
 515                                                                       <common_name>Atlantic bottle-nosed dolphin</common_name>
 516                                                                       <synonym>Delphinus truncatus</synonym>
 517                                                                       <rank>species</rank>
 518                                                                       <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/a/a6/Bottlenose_Dolphin_KSC04pd0178.jpg/800px-Bottlenose_Dolphin_KSC04pd0178.jpg</uri>
 519                                                                     </taxonomy>
 520                                                                   </clade>
 521                                                                 </clade>
 522                                                               </clade>
 523                                                               <clade>
 524                                                                 <taxonomy>
 525                                                                   <id provider="uniprot">9823</id>
 526                                                                   <code>PIG</code>
 527                                                                   <scientific_name>Sus scrofa</scientific_name>
 528                                                                   <common_name>Pig</common_name>
 529                                                                   <rank>species</rank>
 530                                                                   <uri>http://www.batraciens-reptiles.com/sus%20scrofa2.jpg</uri>
 531                                                                 </taxonomy>
 532                                                               </clade>
 533                                                             </clade>
 534                                                             <clade>
 535                                                               <taxonomy>
 536                                                                 <id provider="uniprot">30538</id>
 537                                                                 <code>LAMPA</code>
 538                                                                 <scientific_name>Lama guanicoe pacos</scientific_name>
 539                                                                 <common_name>Alpaca</common_name>
 540                                                                 <synonym>Lama pacos</synonym>
 541                                                                 <rank>species</rank>
 542                                                                 <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/1206/0658.jpeg</uri>
 543                                                               </taxonomy>
 544                                                             </clade>
 545                                                           </clade>
 546                                                           <clade>
 547                                                             <taxonomy>
 548                                                               <id provider="uniprot">9796</id>
 549                                                               <code>HORSE</code>
 550                                                               <scientific_name>Equus caballus</scientific_name>
 551                                                               <common_name>Horse</common_name>
 552                                                               <rank>species</rank>
 553                                                               <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0801/0088.jpeg</uri>
 554                                                             </taxonomy>
 555                                                           </clade>
 556                                                         </clade>
 557                                                         <clade>
 558                                                           <taxonomy>
 559                                                             <id provider="uniprot">9397</id>
 560                                                             <scientific_name>Chiroptera</scientific_name>
 561                                                             <common_name>Bats</common_name>
 562                                                             <rank>order</rank>
 563                                                           </taxonomy>
 564                                                           <clade>
 565                                                             <taxonomy>
 566                                                               <id provider="uniprot">59463</id>
 567                                                               <code>MYOLU</code>
 568                                                               <scientific_name>Myotis lucifugus</scientific_name>
 569                                                               <common_name>Little brown bat</common_name>
 570                                                               <rank>species</rank>
 571                                                               <uri>http://biology.lakeheadu.ca/uploads/Nature_photography/brown_bat.jpg</uri>
 572                                                             </taxonomy>
 573                                                           </clade>
 574                                                           <clade>
 575                                                             <taxonomy>
 576                                                               <id provider="uniprot">132908</id>
 577                                                               <code>PTEVA</code>
 578                                                               <scientific_name>Pteropus vampyrus</scientific_name>
 579                                                               <common_name>Large flying fox</common_name>
 580                                                               <rank>species</rank>
 581                                                               <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/5/5e/Pteropus_vampyrus1.jpg/412px-Pteropus_vampyrus1.jpg</uri>
 582                                                             </taxonomy>
 583                                                           </clade>
 584                                                         </clade>
 585                                                       </clade>
 586                                                       <clade>
 587                                                         <name>Carnivora</name>
 588                                                         <taxonomy>
 589                                                           <id provider="uniprot">33554</id>
 590                                                           <scientific_name>Carnivora</scientific_name>
 591                                                           <rank>order</rank>
 592                                                         </taxonomy>
 593                                                         <clade>
 594                                                           <taxonomy>
 595                                                             <id provider="uniprot">379584</id>
 596                                                             <scientific_name>Caniformia</scientific_name>
 597                                                             <rank>suborder</rank>
 598                                                           </taxonomy>
 599                                                           <clade>
 600                                                             <taxonomy>
 601                                                               <id provider="uniprot">9646</id>
 602                                                               <code>AILME</code>
 603                                                               <scientific_name>Ailuropoda melanoleuca</scientific_name>
 604                                                               <common_name>Giant panda</common_name>
 605                                                               <rank>species</rank>
 606                                                               <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/3/3c/Giant_Panda_2004-03-2.jpg/800px-Giant_Panda_2004-03-2.jpg</uri>
 607                                                             </taxonomy>
 608                                                           </clade>
 609                                                           <clade>
 610                                                             <name>CANFA</name>
 611                                                             <taxonomy>
 612                                                               <id provider="uniprot">9615</id>
 613                                                               <code>CANFA</code>
 614                                                               <scientific_name>Canis familiaris</scientific_name>
 615                                                               <common_name>Dog</common_name>
 616                                                               <synonym>Canis lupus familiaris</synonym>
 617                                                               <rank>subspecies</rank>
 618                                                               <uri>http://upload.wikimedia.org/wikipedia/commons/a/ab/Wikilabrador_jardin.JPG</uri>
 619                                                             </taxonomy>
 620                                                           </clade>
 621                                                         </clade>
 622                                                         <clade>
 623                                                           <name>FELCA</name>
 624                                                           <taxonomy>
 625                                                             <id provider="uniprot">9685</id>
 626                                                             <code>FELCA</code>
 627                                                             <scientific_name>Felis catus</scientific_name>
 628                                                             <common_name>Cat</common_name>
 629                                                             <synonym>Felis silvestris catus</synonym>
 630                                                             <rank>species</rank>
 631                                                             <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/9/9b/Domestic_cat_cropped.jpg/755px-Domestic_cat_cropped.jpg</uri>
 632                                                           </taxonomy>
 633                                                         </clade>
 634                                                       </clade>
 635                                                     </clade>
 636                                                     <clade>
 637                                                       <taxonomy>
 638                                                         <id provider="uniprot">9362</id>
 639                                                         <scientific_name>Insectivora</scientific_name>
 640                                                         <common_name>hedgehogs, shrews, moles and others</common_name>
 641                                                         <rank>order</rank>
 642                                                       </taxonomy>
 643                                                       <clade>
 644                                                         <taxonomy>
 645                                                           <id provider="uniprot">9365</id>
 646                                                           <code>ERIEU</code>
 647                                                           <scientific_name>Erinaceus europaeus</scientific_name>
 648                                                           <common_name>Western European hedgehog</common_name>
 649                                                           <rank>species</rank>
 650                                                           <uri>http://upload.wikimedia.org/wikipedia/commons/d/d4/Igel01.jpg</uri>
 651                                                         </taxonomy>
 652                                                       </clade>
 653                                                       <clade>
 654                                                         <taxonomy>
 655                                                           <id provider="uniprot">42254</id>
 656                                                           <code>SORAR</code>
 657                                                           <scientific_name>Sorex araneus</scientific_name>
 658                                                           <common_name>Eurasian common shrew</common_name>
 659                                                           <synonym>European shrew</synonym>
 660                                                           <rank>species</rank>
 661                                                           <uri>http://www.batraciens-reptiles.com/musaraigne2.jpg</uri>
 662                                                         </taxonomy>
 663                                                       </clade>
 664                                                     </clade>
 665                                                   </clade>
 666                                                 </clade>
 667                                                 <clade>
 668                                                   <taxonomy>
 669                                                     <scientific_name>Atlantogenata</scientific_name>
 670                                                   </taxonomy>
 671                                                   <clade>
 672                                                     <taxonomy>
 673                                                       <id provider="uniprot">311790</id>
 674                                                       <scientific_name>Afrotheria</scientific_name>
 675                                                       <rank>superorder</rank>
 676                                                     </taxonomy>
 677                                                     <clade>
 678                                                       <taxonomy>
 679                                                         <scientific_name>Paenungulata</scientific_name>
 680                                                       </taxonomy>
 681                                                       <clade>
 682                                                         <taxonomy>
 683                                                           <id provider="uniprot">9785</id>
 684                                                           <code>LOXAF</code>
 685                                                           <scientific_name>Loxodonta africana</scientific_name>
 686                                                           <common_name>African savanna elephant</common_name>
 687                                                           <rank>species</rank>
 688                                                           <uri>http://animaldiversity.ummz.umich.edu/site/resources/susan_hoffman/elephants.jpg</uri>
 689                                                         </taxonomy>
 690                                                       </clade>
 691                                                       <clade>
 692                                                         <taxonomy>
 693                                                           <id provider="uniprot">9813</id>
 694                                                           <code>PROCA</code>
 695                                                           <scientific_name>Procavia capensis</scientific_name>
 696                                                           <common_name>Cape hyrax</common_name>
 697                                                           <synonym>Rock dassie</synonym>
 698                                                           <rank>species</rank>
 699                                                           <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/1206/0460.jpeg</uri>
 700                                                         </taxonomy>
 701                                                       </clade>
 702                                                     </clade>
 703                                                     <clade>
 704                                                       <taxonomy>
 705                                                         <id provider="uniprot">9371</id>
 706                                                         <code>ECHTE</code>
 707                                                         <scientific_name>Echinops telfairi</scientific_name>
 708                                                         <common_name>Lesser hedgehog tenrec</common_name>
 709                                                         <rank>species</rank>
 710                                                         <uri>http://animaldiversity.ummz.umich.edu/site/resources/david_kupitz/etelfairi.jpg</uri>
 711                                                       </taxonomy>
 712                                                     </clade>
 713                                                   </clade>
 714                                                   <clade>
 715                                                     <taxonomy>
 716                                                       <id provider="uniprot">9348</id>
 717                                                       <scientific_name>Xenarthra</scientific_name>
 718                                                       <synonym>Edentata</synonym>
 719                                                       <rank>superorder</rank>
 720                                                     </taxonomy>
 721                                                     <clade>
 722                                                       <taxonomy>
 723                                                         <id provider="uniprot">9358</id>
 724                                                         <code>CHOHO</code>
 725                                                         <scientific_name>Choloepus hoffmanni</scientific_name>
 726                                                         <common_name>Hoffmann&apos;s two-fingered sloth</common_name>
 727                                                         <rank>species</rank>
 728                                                         <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/8/89/Sloth8.jpg/800px-Sloth8.jpg</uri>
 729                                                       </taxonomy>
 730                                                     </clade>
 731                                                     <clade>
 732                                                       <taxonomy>
 733                                                         <id provider="uniprot">9361</id>
 734                                                         <code>DASNO</code>
 735                                                         <scientific_name>Dasypus novemcinctus</scientific_name>
 736                                                         <common_name>Nine-banded armadillo</common_name>
 737                                                         <rank>species</rank>
 738                                                         <uri>http://anthropometaphors.files.wordpress.com/2008/11/nine-banded-armadillo41.jpg</uri>
 739                                                       </taxonomy>
 740                                                     </clade>
 741                                                   </clade>
 742                                                 </clade>
 743                                               </clade>
 744                                               <clade>
 745                                                 <taxonomy>
 746                                                   <id provider="uniprot">9263</id>
 747                                                   <scientific_name>Metatheria</scientific_name>
 748                                                   <common_name>Marsupials</common_name>
 749                                                 </taxonomy>
 750                                                 <reference doi="10.1016/j.ympev.2004.05.004">
 751                                                   <desc>First combined cladistic analysis of marsupial mammal interrelationships</desc>
 752                                                 </reference>
 753                                                 <reference>
 754                                                 </reference>
 755                                                 <clade>
 756                                                   <taxonomy>
 757                                                     <scientific_name>Eometatheria</scientific_name>
 758                                                   </taxonomy>
 759                                                   <clade>
 760                                                     <taxonomy>
 761                                                       <id provider="uniprot">9315</id>
 762                                                       <code>MACEU</code>
 763                                                       <scientific_name>Macropus eugenii</scientific_name>
 764                                                       <common_name>Tammar wallaby</common_name>
 765                                                       <rank>species</rank>
 766                                                       <uri>http://upload.wikimedia.org/wikipedia/commons/d/de/Macropus_eugenii.jpg</uri>
 767                                                     </taxonomy>
 768                                                   </clade>
 769                                                   <clade>
 770                                                     <taxonomy>
 771                                                       <id provider="uniprot">9305</id>
 772                                                       <code>SARHA</code>
 773                                                       <scientific_name>Sarcophilus harrisii</scientific_name>
 774                                                       <common_name>Tasmanian devil</common_name>
 775                                                       <synonym>Sarcophilus laniarius</synonym>
 776                                                       <rank>species</rank>
 777                                                       <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/3/3b/Sarcophilus_harrisii_-Healesville_Sanctuary-8a.jpg/727px-Sarcophilus_harrisii_-Healesville_Sanctuary-8a.jpg</uri>
 778                                                     </taxonomy>
 779                                                   </clade>
 780                                                 </clade>
 781                                                 <clade>
 782                                                   <name>MONDO</name>
 783                                                   <taxonomy>
 784                                                     <id provider="uniprot">13616</id>
 785                                                     <code>MONDO</code>
 786                                                     <scientific_name>Monodelphis domestica</scientific_name>
 787                                                     <common_name>Short-tailed gray opossum</common_name>
 788                                                     <rank>species</rank>
 789                                                     <uri>http://animaldiversity.ummz.umich.edu/site/resources/phil_myers/classic/monodelphis.jpg/medium.jpg</uri>
 790                                                   </taxonomy>
 791                                                 </clade>
 792                                               </clade>
 793                                             </clade>
 794                                             <clade>
 795                                               <name>ORNAN</name>
 796                                               <taxonomy>
 797                                                 <id provider="uniprot">9258</id>
 798                                                 <code>ORNAN</code>
 799                                                 <scientific_name>Ornithorhynchus anatinus</scientific_name>
 800                                                 <common_name>Duckbill platypus</common_name>
 801                                                 <rank>species</rank>
 802                                                 <uri>http://upload.wikimedia.org/wikipedia/commons/1/12/Platypus_BrokenRiver_QLD_Australia2.png</uri>
 803                                               </taxonomy>
 804                                             </clade>
 805                                           </clade>
 806                                           <clade>
 807                                             <name>Diapsida</name>
 808                                             <clade>
 809                                               <name>Neognathae</name>
 810                                               <taxonomy>
 811                                                 <id provider="uniprot">8825</id>
 812                                                 <scientific_name>Neognathae</scientific_name>
 813                                                 <rank>superorder</rank>
 814                                               </taxonomy>
 815                                               <clade>
 816                                                 <name>Phasianidae &amp; Anatidae (waterfowl)</name>
 817                                                 <clade>
 818                                                   <taxonomy>
 819                                                     <id provider="uniprot">9005</id>
 820                                                     <scientific_name>Phasianidae</scientific_name>
 821                                                     <rank>family</rank>
 822                                                   </taxonomy>
 823                                                   <clade>
 824                                                     <name>CHICK</name>
 825                                                     <taxonomy>
 826                                                       <id provider="uniprot">9031</id>
 827                                                       <code>CHICK</code>
 828                                                       <scientific_name>Gallus gallus</scientific_name>
 829                                                       <common_name>Chicken</common_name>
 830                                                       <synonym>Gallus domesticus</synonym>
 831                                                       <rank>species</rank>
 832                                                       <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/f/f8/Rooster04_adjusted.jpg/800px-Rooster04_adjusted.jpg</uri>
 833                                                     </taxonomy>
 834                                                   </clade>
 835                                                   <clade>
 836                                                     <taxonomy>
 837                                                       <id provider="uniprot">9103</id>
 838                                                       <code>MELGA</code>
 839                                                       <scientific_name>Meleagris gallopavo</scientific_name>
 840                                                       <common_name>Common turkey</common_name>
 841                                                       <rank>species</rank>
 842                                                       <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0205/0858.jpeg</uri>
 843                                                     </taxonomy>
 844                                                   </clade>
 845                                                 </clade>
 846                                                 <clade>
 847                                                   <taxonomy>
 848                                                     <id provider="uniprot">8839</id>
 849                                                     <code>ANAPL</code>
 850                                                     <scientific_name>Anas platyrhynchos</scientific_name>
 851                                                     <common_name>Domestic duck</common_name>
 852                                                     <synonym>Anas boschas</synonym>
 853                                                     <rank>species</rank>
 854                                                     <uri>http://content.ornith.cornell.edu/UEWebApp/images/MPR_070302_100009_L.jpg</uri>
 855                                                   </taxonomy>
 856                                                 </clade>
 857                                               </clade>
 858                                               <clade>
 859                                                 <name>TAEGU</name>
 860                                                 <taxonomy>
 861                                                   <id provider="uniprot">59729</id>
 862                                                   <code>TAEGU</code>
 863                                                   <scientific_name>Taeniopygia guttata</scientific_name>
 864                                                   <common_name>Zebra finch</common_name>
 865                                                   <synonym>Poephila guttata</synonym>
 866                                                   <rank>species</rank>
 867                                                   <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/8/84/Taeniopygia_guttata_-_front_view_-_dundee_wildlife_park.jpg/355px-Taeniopygia_guttata_-_front_view_-_dundee_wildlife_park.jpg</uri>
 868                                                 </taxonomy>
 869                                               </clade>
 870                                             </clade>
 871                                             <clade>
 872                                               <name>ANOCA</name>
 873                                               <taxonomy>
 874                                                 <id provider="eol">795869</id>
 875                                                 <code>ANOCA</code>
 876                                                 <scientific_name>Anolis carolinensis</scientific_name>
 877                                                 <authority>Voigt, 1832</authority>
 878                                                 <common_name>Green anole</common_name>
 879                                                 <synonym>American chameleon</synonym>
 880                                                 <rank>species</rank>
 881                                                 <uri>http://content61.eol.org/content/2009/09/20/01/05528_580_360.jpg</uri>
 882                                                 <uri>http://content61.eol.org/content/2008/10/08/13/66818_580_360.jpg</uri>
 883                                               </taxonomy>
 884                                             </clade>
 885                                           </clade>
 886                                         </clade>
 887                                         <clade>
 888                                           <taxonomy>
 889                                             <id provider="uniprot">8353</id>
 890                                             <scientific_name>Xenopus</scientific_name>
 891                                             <rank>genus</rank>
 892                                           </taxonomy>
 893                                           <clade>
 894                                             <name>XENTR</name>
 895                                             <taxonomy>
 896                                               <id provider="uniprot">8364</id>
 897                                               <code>XENTR</code>
 898                                               <scientific_name>Xenopus tropicalis</scientific_name>
 899                                               <common_name>Western clawed frog</common_name>
 900                                               <synonym>Silurana tropicalis</synonym>
 901                                               <rank>species</rank>
 902                                               <uri>http://genoweb.univ-rennes1.fr/OGP/xenopus%20tropicalis.jpg</uri>
 903                                             </taxonomy>
 904                                           </clade>
 905                                           <clade>
 906                                             <taxonomy>
 907                                               <id provider="uniprot">8355</id>
 908                                               <code>XENLA</code>
 909                                               <scientific_name>Xenopus laevis</scientific_name>
 910                                               <authority>Daudin, 1802</authority>
 911                                               <common_name>African clawed frog</common_name>
 912                                               <synonym>Bufo laevis</synonym>
 913                                               <rank>species</rank>
 914                                               <uri>http://upload.wikimedia.org/wikipedia/commons/e/e3/Xenopus_laevis.jpg</uri>
 915                                             </taxonomy>
 916                                           </clade>
 917                                         </clade>
 918                                       </clade>
 919                                       <clade>
 920                                         <name>Teleostei</name>
 921                                         <taxonomy>
 922                                           <id provider="uniprot">32443</id>
 923                                           <scientific_name>Teleostei</scientific_name>
 924                                         </taxonomy>
 925                                         <clade>
 926                                           <taxonomy>
 927                                             <id provider="uniprot">123368</id>
 928                                             <scientific_name>Acanthomorpha</scientific_name>
 929                                           </taxonomy>
 930                                           <clade>
 931                                             <taxonomy>
 932                                               <id provider="uniprot">32485</id>
 933                                               <scientific_name>Percomorpha</scientific_name>
 934                                             </taxonomy>
 935                                             <clade>
 936                                               <name>Smegmamorpha</name>
 937                                               <clade>
 938                                                 <name>GASAC</name>
 939                                                 <taxonomy>
 940                                                   <id provider="uniprot">69293</id>
 941                                                   <code>GASAC</code>
 942                                                   <scientific_name>Gasterosteus aculeatus</scientific_name>
 943                                                   <common_name>Three-spined stickleback</common_name>
 944                                                   <rank>species</rank>
 945                                                   <uri>http://www.fiskbasen.se/images/gasterosteus_aculeatus.jpg</uri>
 946                                                 </taxonomy>
 947                                               </clade>
 948                                               <clade>
 949                                                 <name>ORYLA</name>
 950                                                 <taxonomy>
 951                                                   <id provider="uniprot">8090</id>
 952                                                   <code>ORYLA</code>
 953                                                   <scientific_name>Oryzias latipes</scientific_name>
 954                                                   <common_name>Medaka fish</common_name>
 955                                                   <synonym>Japanese ricefish</synonym>
 956                                                   <rank>species</rank>
 957                                                   <uri>http://upload.wikimedia.org/wikipedia/commons/4/49/Nihonmedaka.jpg</uri>
 958                                                 </taxonomy>
 959                                               </clade>
 960                                             </clade>
 961                                             <clade>
 962                                               <taxonomy>
 963                                                 <id provider="uniprot">31031</id>
 964                                                 <scientific_name>Tetraodontidae</scientific_name>
 965                                                 <common_name>puffers</common_name>
 966                                                 <rank>family</rank>
 967                                               </taxonomy>
 968                                               <clade>
 969                                                 <name>FUGRU</name>
 970                                                 <taxonomy>
 971                                                   <id provider="uniprot">31033</id>
 972                                                   <code>FUGRU</code>
 973                                                   <scientific_name>Takifugu rubripes</scientific_name>
 974                                                   <common_name>Japanese pufferfish</common_name>
 975                                                   <synonym>Fugu rubripes</synonym>
 976                                                   <rank>species</rank>
 977                                                   <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/2/25/Fugu_in_Tank.jpg/800px-Fugu_in_Tank.jpg</uri>
 978                                                 </taxonomy>
 979                                               </clade>
 980                                               <clade>
 981                                                 <name>TETNG</name>
 982                                                 <taxonomy>
 983                                                   <id provider="uniprot">99883</id>
 984                                                   <code>TETNG</code>
 985                                                   <scientific_name>Tetraodon nigroviridis</scientific_name>
 986                                                   <common_name>Green puffer</common_name>
 987                                                   <synonym>Chelonodon nigroviridis</synonym>
 988                                                   <rank>species</rank>
 989                                                   <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/b/b6/Tetraodon_nigroviridis_1.jpg/800px-Tetraodon_nigroviridis_1.jpg</uri>
 990                                                 </taxonomy>
 991                                               </clade>
 992                                             </clade>
 993                                             <clade>
 994                                               <taxonomy>
 995                                                 <id provider="uniprot">8128</id>
 996                                                 <code>ORENI</code>
 997                                                 <scientific_name>Tilapia nilotica</scientific_name>
 998                                                 <authority>Linnaeus, 1758</authority>
 999                                                 <common_name>Nile tilapia</common_name>
1000                                                 <synonym>Tilapia nilotica</synonym>
1001                                                 <rank>species</rank>
1002                                                 <uri>http://www.jjphoto.dk/fish_archive/warm_freshwater/oreochromis_niloticus_niloticus.jpg</uri>
1003                                               </taxonomy>
1004                                             </clade>
1005                                           </clade>
1006                                           <clade>
1007                                             <taxonomy>
1008                                               <id provider="uniprot">8049</id>
1009                                               <code>GADMO</code>
1010                                               <scientific_name>Gadus morhua</scientific_name>
1011                                               <common_name>Atlantic cod</common_name>
1012                                               <rank>species</rank>
1013                                               <uri>http://www.marinbi.com/g-morhua.jpg</uri>
1014                                             </taxonomy>
1015                                           </clade>
1016                                         </clade>
1017                                         <clade>
1018                                           <name>DANRE</name>
1019                                           <taxonomy>
1020                                             <id provider="uniprot">7955</id>
1021                                             <code>DANRE</code>
1022                                             <scientific_name>Danio rerio</scientific_name>
1023                                             <common_name>Zebrafish</common_name>
1024                                             <synonym>Brachydanio rerio</synonym>
1025                                             <rank>species</rank>
1026                                             <uri>http://fishbase.org.cn/images/species/Darer_m0.jpg</uri>
1027                                           </taxonomy>
1028                                         </clade>
1029                                       </clade>
1030                                     </clade>
1031                                     <clade>
1032                                       <taxonomy>
1033                                         <id provider="uniprot">7868</id>
1034                                         <code>CALMI</code>
1035                                         <scientific_name>Callorhynchus milii</scientific_name>
1036                                         <common_name>Australian ghost shark</common_name>
1037                                         <synonym>Australian ghost shark</synonym>
1038                                         <rank>species</rank>
1039                                         <uri>http://www.tudiscovery.com/tiburones/que_es/popup_que/asset/07914907646434433_elephant_shark_380x290.jpg</uri>
1040                                       </taxonomy>
1041                                     </clade>
1042                                   </clade>
1043                                   <clade>
1044                                     <taxonomy>
1045                                       <id provider="uniprot">7757</id>
1046                                       <code>PETMA</code>
1047                                       <scientific_name>Petromyzon marinus</scientific_name>
1048                                       <common_name>Sea lamprey</common_name>
1049                                       <rank>species</rank>
1050                                       <uri>http://www.uk-fish.info/pics/sealampray01.jpg</uri>
1051                                     </taxonomy>
1052                                   </clade>
1053                                 </clade>
1054                                 <clade>
1055                                   <name>Urochordata</name>
1056                                   <taxonomy>
1057                                     <id provider="uniprot">7712</id>
1058                                     <scientific_name>Urochordata</scientific_name>
1059                                     <rank>subphylum</rank>
1060                                   </taxonomy>
1061                                   <clade>
1062                                     <taxonomy>
1063                                       <id provider="uniprot">7718</id>
1064                                       <scientific_name>Ciona</scientific_name>
1065                                       <rank>genus</rank>
1066                                     </taxonomy>
1067                                     <clade>
1068                                       <name>CIOIN</name>
1069                                       <taxonomy>
1070                                         <id provider="uniprot">7719</id>
1071                                         <code>CIOIN</code>
1072                                         <scientific_name>Ciona intestinalis</scientific_name>
1073                                         <common_name>Transparent sea squirt</common_name>
1074                                         <synonym>Ascidia intestinalis</synonym>
1075                                         <rank>species</rank>
1076                                         <uri>http://adl.brs.gov.au/marinepests/images/Ciona_intestinalis2.jpg</uri>
1077                                       </taxonomy>
1078                                     </clade>
1079                                     <clade>
1080                                       <name>CIOSA</name>
1081                                       <taxonomy>
1082                                         <id provider="uniprot">51511</id>
1083                                         <code>CIOSA</code>
1084                                         <scientific_name>Ciona savignyi</scientific_name>
1085                                         <common_name>Pacific transparent sea squirt</common_name>
1086                                         <rank>species</rank>
1087                                         <uri>http://www.pnwscuba.com/invasives/photos/ciona4.jpg</uri>
1088                                       </taxonomy>
1089                                     </clade>
1090                                   </clade>
1091                                   <clade>
1092                                     <name>OIKDI</name>
1093                                     <taxonomy>
1094                                       <id provider="ncbi">34765</id>
1095                                       <code>OIKDI</code>
1096                                       <scientific_name>Oikopleura dioica</scientific_name>
1097                                       <common_name>Tunicate</common_name>
1098                                       <rank>species</rank>
1099                                       <uri>http://jellieszone.com/images/oikopleura.jpg</uri>
1100                                     </taxonomy>
1101                                   </clade>
1102                                 </clade>
1103                               </clade>
1104                               <clade>
1105                                 <name>BRAFL</name>
1106                                 <taxonomy>
1107                                   <id provider="uniprot">7739</id>
1108                                   <code>BRAFL</code>
1109                                   <scientific_name>Branchiostoma floridae</scientific_name>
1110                                   <common_name>Florida lancelet</common_name>
1111                                   <synonym>Amphioxus</synonym>
1112                                   <rank>species</rank>
1113                                   <uri>http://www.nicerweb.com/sketches/video/PBS-ShapeOfLife/4.8_BonesBrawnBrains/Branchiostoma_floridae.jpg</uri>
1114                                 </taxonomy>
1115                               </clade>
1116                             </clade>
1117                             <clade>
1118                               <name>Hemichordata &amp; Echinodermata</name>
1119                               <clade>
1120                                 <name>SACKO</name>
1121                                 <taxonomy>
1122                                   <id provider="uniprot">10224</id>
1123                                   <code>SACKO</code>
1124                                   <scientific_name>Saccoglossus kowalevskii</scientific_name>
1125                                   <authority>Agassiz, 1873</authority>
1126                                   <common_name>Acorn worm</common_name>
1127                                   <rank>species</rank>
1128                                   <uri>http://faculty.washington.edu/bjswalla/Hemichordata/Enteropneusta/SkowAK.jpg</uri>
1129                                 </taxonomy>
1130                               </clade>
1131                               <clade>
1132                                 <name>STRPU</name>
1133                                 <taxonomy>
1134                                   <id provider="uniprot">7668</id>
1135                                   <code>STRPU</code>
1136                                   <scientific_name>Strongylocentrotus purpuratus</scientific_name>
1137                                   <common_name>Purple sea urchin</common_name>
1138                                   <rank>species</rank>
1139                                   <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/f/f4/Strongylocentrotus_purpuratus_1.jpg/724px-Strongylocentrotus_purpuratus_1.jpg</uri>
1140                                 </taxonomy>
1141                               </clade>
1142                             </clade>
1143                           </clade>
1144                           <clade>
1145                             <name>Protostomia</name>
1146                             <clade>
1147                               <name>Ecdysozoa</name>
1148                               <clade>
1149                                 <taxonomy>
1150                                   <id provider="uniprot">6656</id>
1151                                   <scientific_name>Arthropoda</scientific_name>
1152                                   <rank>phylum</rank>
1153                                 </taxonomy>
1154                                 <clade>
1155                                   <taxonomy>
1156                                     <id provider="uniprot">197563</id>
1157                                     <scientific_name>Mandibulata</scientific_name>
1158                                   </taxonomy>
1159                                   <clade>
1160                                     <name>Pancrustacea</name>
1161                                     <clade>
1162                                       <taxonomy>
1163                                         <id provider="uniprot">33340</id>
1164                                         <scientific_name>Neoptera</scientific_name>
1165                                         <rank>subclass</rank>
1166                                       </taxonomy>
1167                                       <clade>
1168                                         <taxonomy>
1169                                           <id provider="uniprot">33392</id>
1170                                           <scientific_name>Endopterygota</scientific_name>
1171                                           <rank>infraclass</rank>
1172                                         </taxonomy>
1173                                         <clade>
1174                                           <name>Hymenoptera &amp; Lepidoptera &amp; Diptera</name>
1175                                           <clade>
1176                                             <name>Lepidoptera &amp; Diptera</name>
1177                                             <clade>
1178                                               <taxonomy>
1179                                                 <id provider="uniprot">7147</id>
1180                                                 <scientific_name>Diptera</scientific_name>
1181                                                 <rank>order</rank>
1182                                               </taxonomy>
1183                                               <clade>
1184                                                 <taxonomy>
1185                                                   <id provider="uniprot">7157</id>
1186                                                   <scientific_name>Culicidae</scientific_name>
1187                                                   <common_name>mosquitos</common_name>
1188                                                   <rank>family</rank>
1189                                                 </taxonomy>
1190                                                 <clade>
1191                                                   <name>AEDAE</name>
1192                                                   <taxonomy>
1193                                                     <id provider="uniprot">7159</id>
1194                                                     <code>AEDAE</code>
1195                                                     <scientific_name>Aedes aegypti</scientific_name>
1196                                                     <common_name>Yellowfever mosquito</common_name>
1197                                                     <synonym>Culex aegypti</synonym>
1198                                                     <rank>species</rank>
1199                                                     <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/4/48/Aedes_aegypti_biting_human.jpg/757px-Aedes_aegypti_biting_human.jpg</uri>
1200                                                   </taxonomy>
1201                                                 </clade>
1202                                                 <clade>
1203                                                   <name>ANOGA</name>
1204                                                   <taxonomy>
1205                                                     <id provider="uniprot">7165</id>
1206                                                     <code>ANOGA</code>
1207                                                     <scientific_name>Anopheles gambiae</scientific_name>
1208                                                     <common_name>African malaria mosquito</common_name>
1209                                                     <rank>species</rank>
1210                                                     <uri>http://upload.wikimedia.org/wikipedia/commons/e/e9/Anopheles_gambiae_Mosquito.jpg</uri>
1211                                                   </taxonomy>
1212                                                 </clade>
1213                                                 <clade>
1214                                                   <name>CULPI</name>
1215                                                   <taxonomy>
1216                                                     <id provider="uniprot">7175</id>
1217                                                     <code>CULPI</code>
1218                                                     <scientific_name>Culex pipiens</scientific_name>
1219                                                     <common_name>House mosquito</common_name>
1220                                                     <rank>species</rank>
1221                                                     <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/3/35/Culex_pipiens_2007-1.jpg/628px-Culex_pipiens_2007-1.jpg</uri>
1222                                                   </taxonomy>
1223                                                 </clade>
1224                                               </clade>
1225                                               <clade>
1226                                                 <taxonomy>
1227                                                   <id provider="uniprot">32341</id>
1228                                                   <scientific_name>Sophophora</scientific_name>
1229                                                   <rank>subgenus</rank>
1230                                                 </taxonomy>
1231                                                 <clade>
1232                                                   <name>DROME</name>
1233                                                   <taxonomy>
1234                                                     <id provider="uniprot">7227</id>
1235                                                     <code>DROME</code>
1236                                                     <scientific_name>Drosophila melanogaster</scientific_name>
1237                                                     <common_name>Fruit fly</common_name>
1238                                                     <rank>species</rank>
1239                                                     <uri>http://www.snv.jussieu.fr/bmedia/ATP/images/dro-mal1.jpg</uri>
1240                                                   </taxonomy>
1241                                                 </clade>
1242                                                 <clade>
1243                                                   <name>DROPS</name>
1244                                                   <taxonomy>
1245                                                     <id provider="uniprot">46245</id>
1246                                                     <code>DROPS</code>
1247                                                     <scientific_name>Drosophila pseudoobscura pseudoobscura</scientific_name>
1248                                                     <common_name>Fruit fly</common_name>
1249                                                     <rank>subspecies</rank>
1250                                                     <uri>http://www.naylorgallery.com/wp-content/uploads/fly4stack01small.jpg</uri>
1251                                                   </taxonomy>
1252                                                 </clade>
1253                                               </clade>
1254                                             </clade>
1255                                             <clade>
1256                                               <name>BOMMO</name>
1257                                               <taxonomy>
1258                                                 <id provider="uniprot">7091</id>
1259                                                 <code>BOMMO</code>
1260                                                 <scientific_name>Bombyx mori</scientific_name>
1261                                                 <common_name>Silk moth</common_name>
1262                                                 <rank>species</rank>
1263                                                 <uri>http://lepidoptera.butterflyhouse.com.au/bomb/mori5.jpg</uri>
1264                                               </taxonomy>
1265                                             </clade>
1266                                           </clade>
1267                                           <clade>
1268                                             <taxonomy>
1269                                               <id provider="uniprot">7400</id>
1270                                               <scientific_name>Apocrita</scientific_name>
1271                                               <common_name>wasps, ants and bees</common_name>
1272                                             </taxonomy>
1273                                             <clade>
1274                                               <taxonomy>
1275                                                 <id provider="uniprot">7434</id>
1276                                                 <scientific_name>Aculeata</scientific_name>
1277                                                 <rank>suborder</rank>
1278                                               </taxonomy>
1279                                               <clade>
1280                                                 <name>APIME</name>
1281                                                 <taxonomy>
1282                                                   <id provider="uniprot">7460</id>
1283                                                   <code>APIME</code>
1284                                                   <scientific_name>Apis mellifera</scientific_name>
1285                                                   <common_name>Honeybee</common_name>
1286                                                   <rank>species</rank>
1287                                                   <uri>http://www.floridanature.org/photos/Apis_mellifera_6b_&amp;_Trifolium_sp.,_TBP,_Tallahassee,_20030323.jpg</uri>
1288                                                 </taxonomy>
1289                                               </clade>
1290                                               <clade>
1291                                                 <taxonomy>
1292                                                   <id provider="uniprot">12957</id>
1293                                                   <code>ATTCE</code>
1294                                                   <scientific_name>Atta cephalotes</scientific_name>
1295                                                   <authority>Linnaeus, 1758</authority>
1296                                                   <common_name>Leafcutter ant</common_name>
1297                                                   <rank>species</rank>
1298                                                   <uri>http://upload.wikimedia.org/wikipedia/commons/4/4e/Leaf-cutting_ant.jpg</uri>
1299                                                 </taxonomy>
1300                                               </clade>
1301                                             </clade>
1302                                             <clade>
1303                                               <name>NASVI</name>
1304                                               <taxonomy>
1305                                                 <id provider="uniprot">7425</id>
1306                                                 <code>NASVI</code>
1307                                                 <scientific_name>Nasonia vitripennis</scientific_name>
1308                                                 <common_name>Parasitic wasp</common_name>
1309                                                 <rank>species</rank>
1310                                                 <uri>http://www.freshpond.org/nasonia.jpg</uri>
1311                                               </taxonomy>
1312                                             </clade>
1313                                           </clade>
1314                                         </clade>
1315                                         <clade>
1316                                           <name>TRICA</name>
1317                                           <taxonomy>
1318                                             <id provider="uniprot">7070</id>
1319                                             <code>TRICA</code>
1320                                             <scientific_name>Tribolium castaneum</scientific_name>
1321                                             <common_name>Red flour beetle</common_name>
1322                                             <rank>species</rank>
1323                                             <uri>http://www.ars.usda.gov/sp2UserFiles/Place/54300530/proj/tribolium/rfb.jpg</uri>
1324                                           </taxonomy>
1325                                         </clade>
1326                                       </clade>
1327                                       <clade>
1328                                         <taxonomy>
1329                                           <id provider="uniprot">7524</id>
1330                                           <scientific_name>Hemiptera</scientific_name>
1331                                           <rank>order</rank>
1332                                         </taxonomy>
1333                                         <clade>
1334                                           <name>ACYPI</name>
1335                                           <taxonomy>
1336                                             <id provider="uniprot">7029</id>
1337                                             <code>ACYPI</code>
1338                                             <scientific_name>Acyrthosiphon pisum</scientific_name>
1339                                             <common_name>Pea aphid</common_name>
1340                                             <rank>species</rank>
1341                                             <uri>http://www.agroatlas.ru/content/pests/Acyrthosiphon_pisum/Acyrthosiphon_pisum.jpg</uri>
1342                                           </taxonomy>
1343                                         </clade>
1344                                         <clade>
1345                                           <name>RHOPR</name>
1346                                           <taxonomy>
1347                                             <id provider="uniprot">13249</id>
1348                                             <code>RHOPR</code>
1349                                             <scientific_name>Rhodnius prolixus</scientific_name>
1350                                             <common_name>Triatomid bug</common_name>
1351                                             <rank>species</rank>
1352                                             <uri>http://upload.wikimedia.org/wikipedia/commons/b/b9/Rhodnius_prolixus.jpg</uri>
1353                                           </taxonomy>
1354                                         </clade>
1355                                       </clade>
1356                                     </clade>
1357                                     <clade>
1358                                       <taxonomy>
1359                                         <id provider="uniprot">6658</id>
1360                                         <scientific_name>Branchiopoda</scientific_name>
1361                                         <rank>class</rank>
1362                                       </taxonomy>
1363                                       <clade>
1364                                         <taxonomy>
1365                                           <id provider="uniprot">6661</id>
1366                                           <code>ARTSF</code>
1367                                           <scientific_name>Artemia franciscana</scientific_name>
1368                                           <common_name>Brine shrimp</common_name>
1369                                           <synonym>Artemia sanfranciscana</synonym>
1370                                           <rank>species</rank>
1371                                           <uri>http://www.alireza-asem.ir/images/Artemia.jpg</uri>
1372                                         </taxonomy>
1373                                       </clade>
1374                                       <clade>
1375                                         <name>DAPPU</name>
1376                                         <taxonomy>
1377                                           <id provider="uniprot">6669</id>
1378                                           <code>DAPPU</code>
1379                                           <scientific_name>Daphnia pulex</scientific_name>
1380                                           <common_name>Water flea</common_name>
1381                                           <rank>species</rank>
1382                                           <uri>http://www.microscopy-uk.org.uk/mag/imgjun99/daphni.jpg</uri>
1383                                         </taxonomy>
1384                                       </clade>
1385                                     </clade>
1386                                   </clade>
1387                                   <clade>
1388                                     <taxonomy>
1389                                       <id provider="uniprot">61985</id>
1390                                       <scientific_name>Myriapoda</scientific_name>
1391                                       <rank>subphylum</rank>
1392                                     </taxonomy>
1393                                     <clade>
1394                                       <taxonomy>
1395                                         <id provider="uniprot">7553</id>
1396                                         <scientific_name>Diplopoda</scientific_name>
1397                                         <common_name>millipedes</common_name>
1398                                         <rank>class</rank>
1399                                       </taxonomy>
1400                                       <clade>
1401                                         <taxonomy>
1402                                           <id provider="uniprot">118561</id>
1403                                           <scientific_name>Helminthomorpha</scientific_name>
1404                                           <rank>subclass</rank>
1405                                         </taxonomy>
1406                                         <clade>
1407                                           <taxonomy>
1408                                             <id provider="uniprot">364406</id>
1409                                             <scientific_name>Antrokoreana gracilipes</scientific_name>
1410                                             <rank>species</rank>
1411                                             <uri>http://www.gwbaekdu.com/data/2d/%EA%B3%A1%EC%84%9D%EA%B5%B4_4(%EB%93%B1%EC%A4%84%EA%B5%B4%EB%85%B8%EB%9E%98%EA%B8%B0).jpg</uri>
1412                                           </taxonomy>
1413                                         </clade>
1414                                         <clade>
1415                                           <taxonomy>
1416                                             <id provider="uniprot">174156</id>
1417                                             <code>NARAN</code>
1418                                             <scientific_name>Narceus annularis</scientific_name>
1419                                             <common_name>Millipede</common_name>
1420                                             <rank>species</rank>
1421                                             <uri>http://i.pbase.com/g4/59/68959/2/59864073.narceus0705062large.jpg</uri>
1422                                           </taxonomy>
1423                                         </clade>
1424                                       </clade>
1425                                       <clade>
1426                                         <taxonomy>
1427                                           <id provider="uniprot">52428</id>
1428                                           <scientific_name>Polyxenus lagurus</scientific_name>
1429                                           <common_name>bristly millipede</common_name>
1430                                           <rank>species</rank>
1431                                           <uri>http://upload.wikimedia.org/wikipedia/commons/5/54/Polyxenus.lagurus.1.jpg</uri>
1432                                         </taxonomy>
1433                                       </clade>
1434                                     </clade>
1435                                     <clade>
1436                                       <taxonomy>
1437                                         <id provider="uniprot">7540</id>
1438                                         <scientific_name>Chilopoda</scientific_name>
1439                                         <common_name>centipedes</common_name>
1440                                         <rank>class</rank>
1441                                       </taxonomy>
1442                                       <clade>
1443                                         <taxonomy>
1444                                           <id provider="uniprot">29022</id>
1445                                           <code>SCUCO</code>
1446                                           <scientific_name>Scutigera coleoptrata</scientific_name>
1447                                           <common_name>House centipede</common_name>
1448                                           <rank>species</rank>
1449                                           <uri>http://upload.wikimedia.org/wikipedia/commons/1/14/Scutigera_coleoptrata.JPG</uri>
1450                                         </taxonomy>
1451                                       </clade>
1452                                       <clade>
1453                                         <taxonomy>
1454                                           <id provider="uniprot">126957</id>
1455                                           <scientific_name>Strigamia maritima</scientific_name>
1456                                           <rank>species</rank>
1457                                           <uri>http://images.marinespecies.org/resized/22703_strigamia-maritima-male-loch-linnhe-scotland.jpg</uri>
1458                                         </taxonomy>
1459                                       </clade>
1460                                     </clade>
1461                                   </clade>
1462                                 </clade>
1463                                 <clade>
1464                                   <name>IXOSC</name>
1465                                   <taxonomy>
1466                                     <id provider="uniprot">6945</id>
1467                                     <code>IXOSC</code>
1468                                     <scientific_name>Ixodes scapularis</scientific_name>
1469                                     <common_name>Black-legged tick</common_name>
1470                                     <synonym>Deer tick</synonym>
1471                                     <rank>species</rank>
1472                                     <uri>http://upload.wikimedia.org/wikipedia/commons/8/8c/Deertick.jpg</uri>
1473                                   </taxonomy>
1474                                 </clade>
1475                               </clade>
1476                               <clade>
1477                                 <taxonomy>
1478                                   <id provider="uniprot">119089</id>
1479                                   <scientific_name>Chromadorea</scientific_name>
1480                                   <rank>class</rank>
1481                                 </taxonomy>
1482                                 <reference doi="10.1038/32160">
1483                                 </reference>
1484                                 <clade>
1485                                   <name>nematode Clade V</name>
1486                                   <clade>
1487                                     <name>Caenorhabditis</name>
1488                                     <taxonomy>
1489                                       <id provider="uniprot">6237</id>
1490                                       <scientific_name>Caenorhabditis</scientific_name>
1491                                       <rank>genus</rank>
1492                                     </taxonomy>
1493                                     <clade>
1494                                       <name>CAEBR</name>
1495                                       <taxonomy>
1496                                         <id provider="uniprot">6238</id>
1497                                         <code>CAEBR</code>
1498                                         <scientific_name>Caenorhabditis briggsae</scientific_name>
1499                                         <rank>species</rank>
1500                                         <uri>http://www.life.umd.edu/biology/haag/briggsae_herm.jpg</uri>
1501                                       </taxonomy>
1502                                     </clade>
1503                                     <clade>
1504                                       <name>CAEEL</name>
1505                                       <taxonomy>
1506                                         <id provider="uniprot">6239</id>
1507                                         <code>CAEEL</code>
1508                                         <scientific_name>Caenorhabditis elegans</scientific_name>
1509                                         <rank>species</rank>
1510                                         <uri>http://homepages.ed.ac.uk/mbx/C_elegans/N2_picture.gif</uri>
1511                                       </taxonomy>
1512                                     </clade>
1513                                   </clade>
1514                                   <clade>
1515                                     <name>PRIPA</name>
1516                                     <taxonomy>
1517                                       <id provider="uniprot">54126</id>
1518                                       <code>PRIPA</code>
1519                                       <scientific_name>Pristionchus pacificus</scientific_name>
1520                                       <rank>species</rank>
1521                                       <uri>http://smithlabdb.usc.edu/images/Pristionchus_pacificus.jpg</uri>
1522                                     </taxonomy>
1523                                   </clade>
1524                                 </clade>
1525                                 <clade>
1526                                   <name>BRUMA</name>
1527                                   <taxonomy>
1528                                     <id provider="uniprot">6279</id>
1529                                     <code>BRUMA</code>
1530                                     <scientific_name>Brugia malayi</scientific_name>
1531                                     <common_name>Filarial nematode worm</common_name>
1532                                     <rank>species</rank>
1533                                     <uri>http://upload.wikimedia.org/wikipedia/commons/4/4a/Brugia_malayi.JPG</uri>
1534                                   </taxonomy>
1535                                 </clade>
1536                               </clade>
1537                             </clade>
1538                             <clade>
1539                               <name>Lophotrochozoa</name>
1540                               <clade>
1541                                 <name>Annelida &amp; Mollusca</name>
1542                                 <clade>
1543                                   <taxonomy>
1544                                     <id provider="uniprot">6340</id>
1545                                     <scientific_name>Annelida</scientific_name>
1546                                     <rank>phylum</rank>
1547                                   </taxonomy>
1548                                   <clade>
1549                                     <name>CAP</name>
1550                                     <taxonomy>
1551                                       <id provider="uniprot">283909</id>
1552                                       <scientific_name>Capitella teleta</scientific_name>
1553                                       <authority>Blake, Grassle &amp; Eckelbarger, 2009</authority>
1554                                       <synonym>Capitella sp. I</synonym>
1555                                       <rank>species</rank>
1556                                       <uri>http://genome.jgi-psf.org/Capca1/capitella.jpg</uri>
1557                                     </taxonomy>
1558                                   </clade>
1559                                   <clade>
1560                                     <taxonomy>
1561                                       <id provider="uniprot">6412</id>
1562                                       <code>HELRO</code>
1563                                       <scientific_name>Helobdella robusta</scientific_name>
1564                                       <common_name>Californian leech</common_name>
1565                                       <rank>species</rank>
1566                                       <uri>http://genome.jgi-psf.org/Helro1/Helro_leech.jpg</uri>
1567                                     </taxonomy>
1568                                   </clade>
1569                                 </clade>
1570                                 <clade>
1571                                   <taxonomy>
1572                                     <id provider="uniprot">6447</id>
1573                                     <scientific_name>Mollusca</scientific_name>
1574                                     <rank>phylum</rank>
1575                                   </taxonomy>
1576                                   <clade>
1577                                     <taxonomy>
1578                                       <id provider="uniprot">6448</id>
1579                                       <scientific_name>Gastropoda</scientific_name>
1580                                       <rank>class</rank>
1581                                     </taxonomy>
1582                                     <clade>
1583                                       <taxonomy>
1584                                         <id provider="uniprot">225164</id>
1585                                         <code>LOTGI</code>
1586                                         <scientific_name>Lottia gigantea</scientific_name>
1587                                         <common_name>Owl limpet</common_name>
1588                                         <rank>species</rank>
1589                                         <uri>http://nathistoc.bio.uci.edu/Molluscs/OwlLimpet1.jpg</uri>
1590                                       </taxonomy>
1591                                     </clade>
1592                                     <clade>
1593                                       <taxonomy>
1594                                         <id provider="uniprot">6500</id>
1595                                         <code>APLCA</code>
1596                                         <scientific_name>Aplysia californica</scientific_name>
1597                                         <common_name>California sea hare</common_name>
1598                                         <rank>species</rank>
1599                                         <uri>http://upload.wikimedia.org/wikipedia/commons/e/ef/Aplysia_californica.jpg</uri>
1600                                       </taxonomy>
1601                                     </clade>
1602                                   </clade>
1603                                   <clade>
1604                                     <taxonomy>
1605                                       <id provider="uniprot">29159</id>
1606                                       <code>CRAGI</code>
1607                                       <scientific_name>Crassostrea gigas</scientific_name>
1608                                       <authority>Thunberg, 1793</authority>
1609                                       <common_name>Pacific oyster</common_name>
1610                                       <synonym>Crassotrea gigas</synonym>
1611                                       <synonym>Crassostrea angulata</synonym>
1612                                       <synonym>Ostrea gigas</synonym>
1613                                       <rank>species</rank>
1614                                       <uri>http://www.marlin.ac.uk/imgs/o_cragig.jpg</uri>
1615                                     </taxonomy>
1616                                   </clade>
1617                                 </clade>
1618                               </clade>
1619                               <clade>
1620                                 <taxonomy>
1621                                   <id provider="uniprot">6157</id>
1622                                   <scientific_name>Platyhelminthes</scientific_name>
1623                                   <rank>phylum</rank>
1624                                 </taxonomy>
1625                                 <clade>
1626                                   <name>SCHMA</name>
1627                                   <taxonomy>
1628                                     <id provider="uniprot">6183</id>
1629                                     <code>SCHMA</code>
1630                                     <scientific_name>Schistosoma mansoni</scientific_name>
1631                                     <common_name>Blood fluke</common_name>
1632                                     <rank>species</rank>
1633                                     <uri>http://animaldiversity.ummz.umich.edu/site/resources/Grzimek_inverts/Trematoda/Schistosoma_mansoni.jpg/medium.jpg</uri>
1634                                   </taxonomy>
1635                                 </clade>
1636                                 <clade>
1637                                   <name>SCHMD</name>
1638                                   <taxonomy>
1639                                     <id provider="uniprot">79327</id>
1640                                     <code>SCHMD</code>
1641                                     <scientific_name>Schmidtea mediterranea</scientific_name>
1642                                     <common_name>Freshwater planarian flatworm</common_name>
1643                                     <rank>species</rank>
1644                                     <uri>http://www.astrobio.net/images/galleryimages_images/Gallery_Image_8136.jpg</uri>
1645                                   </taxonomy>
1646                                 </clade>
1647                               </clade>
1648                             </clade>
1649                           </clade>
1650                         </clade>
1651                         <clade>
1652                           <name>Cnidaria</name>
1653                           <taxonomy>
1654                             <id provider="uniprot">6073</id>
1655                             <scientific_name>Cnidaria</scientific_name>
1656                             <rank>phylum</rank>
1657                           </taxonomy>
1658                           <clade>
1659                             <taxonomy>
1660                               <id provider="uniprot">6102</id>
1661                               <scientific_name>Hexacorallia</scientific_name>
1662                               <synonym>Ceriantipatharia</synonym>
1663                               <synonym>Zoantharia</synonym>
1664                               <rank>subclass</rank>
1665                             </taxonomy>
1666                             <clade>
1667                               <taxonomy>
1668                                 <id provider="uniprot">45351</id>
1669                                 <code>NEMVE</code>
1670                                 <scientific_name>Nematostella vectensis</scientific_name>
1671                                 <common_name>Starlet sea anemone</common_name>
1672                                 <rank>species</rank>
1673                                 <uri>http://genome.jgi-psf.org/Nemve1/Nematostellapolyp.jpg</uri>
1674                               </taxonomy>
1675                             </clade>
1676                             <clade>
1677                               <taxonomy>
1678                                 <id provider="uniprot">70779</id>
1679                                 <code>ACRDI</code>
1680                                 <scientific_name>Acropora digitifera</scientific_name>
1681                                 <common_name>Staghorn coral</common_name>
1682                                 <rank>species</rank>
1683                                 <uri>http://www.botany.hawaii.edu/basch/uhnpscesu/htms/NPSAcorl/images/acropori/acrdigitif7.jpg</uri>
1684                               </taxonomy>
1685                             </clade>
1686                           </clade>
1687                           <clade>
1688                             <name>HYDMA</name>
1689                             <taxonomy>
1690                               <id provider="uniprot">6085</id>
1691                               <code>HYDMA</code>
1692                               <scientific_name>Hydra magnipapillata</scientific_name>
1693                               <authority>Ito, 1947</authority>
1694                               <rank>species</rank>
1695                               <uri>http://www.ncbi.nlm.nih.gov/UniGene/IMG/6085.gif</uri>
1696                             </taxonomy>
1697                           </clade>
1698                         </clade>
1699                       </clade>
1700                       <clade>
1701                         <name>TRIAD</name>
1702                         <taxonomy>
1703                           <id provider="uniprot">10228</id>
1704                           <code>TRIAD</code>
1705                           <scientific_name>Trichoplax adhaerens</scientific_name>
1706                           <synonym>Trichoplax reptans</synonym>
1707                           <rank>species</rank>
1708                           <uri>http://ncse.com/files/images/trichoplax_ana_signorovitch.jpg</uri>
1709                         </taxonomy>
1710                         <reference doi="10.1073/pnas.0602076103">
1711                         </reference>
1712                       </clade>
1713                     </clade>
1714                     <clade>
1715                       <name>AMPQU</name>
1716                       <taxonomy>
1717                         <id provider="uniprot">400682</id>
1718                         <code>AMPQE</code>
1719                         <scientific_name>Amphimedon queenslandica</scientific_name>
1720                         <authority>Hooper &amp; Van Soest, 2006</authority>
1721                         <common_name>Sponge</common_name>
1722                         <synonym>Reniera sp. JGI-2005</synonym>
1723                         <rank>species</rank>
1724                         <uri>http://images.marinespecies.org/resized/46694_amphimedon-queenslandica.jpg</uri>
1725                       </taxonomy>
1726                     </clade>
1727                   </clade>
1728                   <clade>
1729                     <taxonomy>
1730                       <id provider="uniprot">81524</id>
1731                       <scientific_name>Codonosigidae</scientific_name>
1732                       <rank>family</rank>
1733                     </taxonomy>
1734                     <clade>
1735                       <name>MONBE</name>
1736                       <taxonomy>
1737                         <id provider="uniprot">81824</id>
1738                         <code>MONBE</code>
1739                         <scientific_name>Monosiga brevicollis</scientific_name>
1740                         <common_name>Choanoflagellate</common_name>
1741                         <rank>species</rank>
1742                         <uri>http://genome.jgi-psf.org/Monbr1/Monosiga_1.jpg</uri>
1743                       </taxonomy>
1744                     </clade>
1745                     <clade>
1746                       <taxonomy>
1747                         <id provider="uniprot">946362</id>
1748                         <code>SALS5</code>
1749                         <scientific_name>Salpingoeca rosetta</scientific_name>
1750                         <synonym>Proterospongia sp. ATCC 50818</synonym>
1751                         <synonym>Salpingoeca sp. ATCC 50818</synonym>
1752                         <rank>species</rank>
1753                         <uri>http://cfb.unh.edu/phycokey/Choices/Amoebae_Flagellates_Ciliates/Choanoflagellates/SALPINGOECA/salpingoeca_02_300x240_Kalle%20Olli_botany.ut.ee.jpg</uri>
1754                       </taxonomy>
1755                     </clade>
1756                   </clade>
1757                 </clade>
1758                 <clade>
1759                   <name>Ichthyophonida &amp; Filasterea</name>
1760                   <clade>
1761                     <taxonomy>
1762                       <id provider="uniprot">198625</id>
1763                       <scientific_name>Ichthyophonida</scientific_name>
1764                       <rank>order</rank>
1765                     </taxonomy>
1766                     <clade>
1767                       <taxonomy>
1768                         <id provider="uniprot">4881</id>
1769                         <code>AMOPA</code>
1770                         <scientific_name>Amoebidium parasiticum</scientific_name>
1771                         <rank>species</rank>
1772                         <uri>http://www.nhm.ku.edu/~fungi/Ilustgenera/amoebi.jpg</uri>
1773                       </taxonomy>
1774                     </clade>
1775                     <clade>
1776                       <name>SPHARC</name>
1777                       <taxonomy>
1778                         <id provider="uniprot">72019</id>
1779                         <scientific_name>Sphaeroforma arctica</scientific_name>
1780                         <rank>species</rank>
1781                         <uri>http://www.sciencedirect.com/cache/MiamiImageURL/1-s2.0-S0168952507000236-gr2.jpg</uri>
1782                       </taxonomy>
1783                     </clade>
1784                   </clade>
1785                   <clade>
1786                     <taxonomy>
1787                       <scientific_name>Filasterea</scientific_name>
1788                     </taxonomy>
1789                     <reference doi="10.1371/journal.pone.0002098">
1790                     </reference>
1791                     <reference>
1792                     </reference>
1793                     <clade>
1794                       <name>CAPOWC</name>
1795                       <taxonomy>
1796                         <id provider="uniprot">192875</id>
1797                         <scientific_name>Capsaspora owczarzaki</scientific_name>
1798                         <rank>species</rank>
1799                         <uri>http://www.berfrois.com/wp-content/uploads/2011/03/Capsaspora_owczarzaki.jpg</uri>
1800                       </taxonomy>
1801                     </clade>
1802                     <clade>
1803                       <name>MINVIB</name>
1804                       <taxonomy>
1805                         <id provider="uniprot">134558</id>
1806                         <scientific_name>Ministeria vibrans</scientific_name>
1807                         <rank>species</rank>
1808                         <uri>http://ars.els-cdn.com/content/image/1-s2.0-S0959437X03001382-gr2.jpg</uri>
1809                       </taxonomy>
1810                     </clade>
1811                   </clade>
1812                 </clade>
1813               </clade>
1814               <clade>
1815                 <taxonomy>
1816                   <scientific_name>Holomycota</scientific_name>
1817                   <synonym>Nucletmycea</synonym>
1818                 </taxonomy>
1819                 <clade>
1820                   <taxonomy>
1821                     <id provider="uniprot">4751</id>
1822                     <scientific_name>Fungi</scientific_name>
1823                     <rank>kingdom</rank>
1824                   </taxonomy>
1825                   <clade>
1826                     <name>Dikarya &amp; Mucoromycotina &amp; Kickxellomycotina &amp; Blastocladiomycota &amp; Chytridiomycota &amp; Neocallimastigomycota</name>
1827                     <clade>
1828                       <name>Dikarya &amp; Mucoromycotina &amp; Kickxellomycotina &amp; Blastocladiomycota &amp; Chytridiomycota</name>
1829                       <clade>
1830                         <name>Dikarya &amp; Mucoromycotina &amp; Kickxellomycotina &amp; Blastocladiomycota</name>
1831                         <clade>
1832                           <name>Dikarya &amp; Mucoromycotina &amp; Kickxellomycotina</name>
1833                           <clade>
1834                             <name>Dikarya &amp; Mucoromycotina</name>
1835                             <clade>
1836                               <taxonomy>
1837                                 <id provider="uniprot">451864</id>
1838                                 <scientific_name>Dikarya</scientific_name>
1839                                 <rank>subkingdom</rank>
1840                               </taxonomy>
1841                               <reference doi="10.1038/nature05110">
1842                               </reference>
1843                               <reference>
1844                               </reference>
1845                               <clade>
1846                                 <taxonomy>
1847                                   <id provider="uniprot">4890</id>
1848                                   <scientific_name>Ascomycota</scientific_name>
1849                                   <rank>phylum</rank>
1850                                 </taxonomy>
1851                                 <clade>
1852                                   <name>Pezizomycotina &amp; Saccharomycetales</name>
1853                                   <clade>
1854                                     <taxonomy>
1855                                       <id provider="uniprot">147538</id>
1856                                       <scientific_name>Pezizomycotina</scientific_name>
1857                                       <synonym>Euascomycota</synonym>
1858                                       <rank>subphylum</rank>
1859                                     </taxonomy>
1860                                     <reference doi="0.3852/mycologia.98.6.1018">
1861                                       <desc>A five-gene phylogeny of Pezizomycotina</desc>
1862                                     </reference>
1863                                     <reference>
1864                                     </reference>
1865                                     <clade>
1866                                       <taxonomy>
1867                                         <id provider="uniprot">716546</id>
1868                                         <scientific_name>Leotiomyceta</scientific_name>
1869                                       </taxonomy>
1870                                       <clade>
1871                                         <name>Sordariomyceta &amp; Dothideomycetes &amp; Trichocomaceae &amp; Lecanoromycetes</name>
1872                                         <clade>
1873                                           <name>Sordariomyceta &amp; Dothideomycetes &amp; Lecanoromycetes</name>
1874                                           <clade>
1875                                             <name>Sordariomyceta &amp; Lecanoromycetes</name>
1876                                             <clade>
1877                                               <taxonomy>
1878                                                 <id provider="uniprot">715989</id>
1879                                                 <scientific_name>Sordariomyceta</scientific_name>
1880                                               </taxonomy>
1881                                               <clade>
1882                                                 <taxonomy>
1883                                                   <id provider="uniprot">147550</id>
1884                                                   <scientific_name>Sordariomycetes</scientific_name>
1885                                                   <rank>class</rank>
1886                                                 </taxonomy>
1887                                                 <clade>
1888                                                   <name>Magnaporthales &amp; Hypocreales</name>
1889                                                   <clade>
1890                                                     <taxonomy>
1891                                                       <id provider="uniprot">5125</id>
1892                                                       <scientific_name>Hypocreales</scientific_name>
1893                                                       <rank>order</rank>
1894                                                     </taxonomy>
1895                                                     <clade>
1896                                                       <name>ACRALC</name>
1897                                                       <taxonomy>
1898                                                         <id provider="uniprot">398408</id>
1899                                                         <scientific_name>Acremonium alcalophilum</scientific_name>
1900                                                         <rank>species</rank>
1901                                                         <uri>http://genome.jgi-psf.org/public/Acral1_c3a/Acral1.jpg</uri>
1902                                                       </taxonomy>
1903                                                     </clade>
1904                                                     <clade>
1905                                                       <name>GIBZE</name>
1906                                                       <taxonomy>
1907                                                         <id provider="uniprot">5518</id>
1908                                                         <code>GIBZE</code>
1909                                                         <scientific_name>Gibberella zeae</scientific_name>
1910                                                         <common_name>Wheat head blight fungus</common_name>
1911                                                         <synonym>Fusarium graminearum</synonym>
1912                                                         <rank>species</rank>
1913                                                         <uri>http://www.apsnet.org/publications/apsnetfeatures/PublishingImages/1999%20Features/Fusarium02sm.jpg</uri>
1914                                                       </taxonomy>
1915                                                     </clade>
1916                                                     <clade>
1917                                                       <taxonomy>
1918                                                         <id provider="uniprot">29875</id>
1919                                                         <code>HYPVI</code>
1920                                                         <scientific_name>Hypocrea virens</scientific_name>
1921                                                         <common_name>Gliocladium virens</common_name>
1922                                                         <synonym>Trichoderma virens</synonym>
1923                                                         <synonym>Gliocladium flavofuscum</synonym>
1924                                                         <rank>species</rank>
1925                                                         <uri>http://www.ars.usda.gov/images/docs/10920_11114/Stroma1.jpg</uri>
1926                                                       </taxonomy>
1927                                                     </clade>
1928                                                   </clade>
1929                                                   <clade>
1930                                                     <name>MAGGR</name>
1931                                                     <taxonomy>
1932                                                       <id provider="uniprot">148305</id>
1933                                                       <code>MAGGR</code>
1934                                                       <scientific_name>Magnaporthe grisea</scientific_name>
1935                                                       <common_name>Rice blast fungus</common_name>
1936                                                       <synonym>Pyricularia grisea</synonym>
1937                                                       <rank>species</rank>
1938                                                       <uri>http://www.forestryimages.org/images/768x512/5369002.jpg</uri>
1939                                                     </taxonomy>
1940                                                   </clade>
1941                                                 </clade>
1942                                                 <clade>
1943                                                   <taxonomy>
1944                                                     <id provider="uniprot">5139</id>
1945                                                     <scientific_name>Sordariales</scientific_name>
1946                                                     <rank>order</rank>
1947                                                   </taxonomy>
1948                                                   <clade>
1949                                                     <taxonomy>
1950                                                       <id provider="uniprot">35718</id>
1951                                                       <scientific_name>Chaetomiaceae</scientific_name>
1952                                                       <rank>family</rank>
1953                                                     </taxonomy>
1954                                                     <clade>
1955                                                       <taxonomy>
1956                                                         <id provider="uniprot">35719</id>
1957                                                         <scientific_name>Thielavia</scientific_name>
1958                                                         <rank>genus</rank>
1959                                                       </taxonomy>
1960                                                       <clade>
1961                                                         <name>MYCTHE</name>
1962                                                         <taxonomy>
1963                                                           <id provider="uniprot">573728</id>
1964                                                           <scientific_name>Myceliophthora thermophila</scientific_name>
1965                                                           <authority>(Apinis) Oorschot 1977</authority>
1966                                                           <synonym>Sporotrichum thermophilum</synonym>
1967                                                           <synonym>anamorph of Thielavia heterothallica</synonym>
1968                                                           <rank>species</rank>
1969                                                           <uri>http://genome.jgi-psf.org/public/Spoth2/Spoth0.jpg</uri>
1970                                                         </taxonomy>
1971                                                       </clade>
1972                                                       <clade>
1973                                                         <name>THITER</name>
1974                                                         <taxonomy>
1975                                                           <id provider="eol">193532</id>
1976                                                           <scientific_name>Thielavia terrestris</scientific_name>
1977                                                           <authority>Malloch &amp; Cain 1972</authority>
1978                                                           <synonym>Acremonium alabamense</synonym>
1979                                                           <rank>species</rank>
1980                                                           <uri>http://genome.jgi-psf.org/public/Thite2/Thite1.jpg</uri>
1981                                                         </taxonomy>
1982                                                       </clade>
1983                                                     </clade>
1984                                                     <clade>
1985                                                       <name>CHAGB</name>
1986                                                       <taxonomy>
1987                                                         <id provider="eol">1029505</id>
1988                                                         <code>CHAGB</code>
1989                                                         <scientific_name>Chaetomium globosum</scientific_name>
1990                                                         <authority>Kunze 1817</authority>
1991                                                         <common_name>Soil fungus</common_name>
1992                                                         <rank>species</rank>
1993                                                       </taxonomy>
1994                                                     </clade>
1995                                                   </clade>
1996                                                   <clade>
1997                                                     <name>NEUCR</name>
1998                                                     <taxonomy>
1999                                                       <id provider="uniprot">5141</id>
2000                                                       <code>NEUCR</code>
2001                                                       <scientific_name>Neurospora crassa</scientific_name>
2002                                                       <rank>species</rank>
2003                                                     </taxonomy>
2004                                                   </clade>
2005                                                 </clade>
2006                                               </clade>
2007                                               <clade>
2008                                                 <taxonomy>
2009                                                   <id provider="uniprot">147548</id>
2010                                                   <scientific_name>Leotiomycetes</scientific_name>
2011                                                   <rank>class</rank>
2012                                                 </taxonomy>
2013                                                 <clade>
2014                                                   <taxonomy>
2015                                                     <id provider="uniprot">28983</id>
2016                                                     <scientific_name>Sclerotiniaceae</scientific_name>
2017                                                     <rank>family</rank>
2018                                                   </taxonomy>
2019                                                   <clade>
2020                                                     <taxonomy>
2021                                                       <id provider="uniprot">40559</id>
2022                                                       <code>BOTFU</code>
2023                                                       <scientific_name>Botryotinia fuckeliana</scientific_name>
2024                                                       <common_name>Noble rot fungus</common_name>
2025                                                       <synonym>Botrytis cinerea</synonym>
2026                                                       <rank>species</rank>
2027                                                     </taxonomy>
2028                                                   </clade>
2029                                                   <clade>
2030                                                     <taxonomy>
2031                                                       <id provider="uniprot">5180</id>
2032                                                       <code>SCLSC</code>
2033                                                       <scientific_name>Sclerotinia sclerotiorum</scientific_name>
2034                                                       <common_name>White mold</common_name>
2035                                                       <synonym>Whetzelinia sclerotiorum</synonym>
2036                                                       <rank>species</rank>
2037                                                     </taxonomy>
2038                                                   </clade>
2039                                                 </clade>
2040                                                 <clade>
2041                                                   <name>OIDMAI</name>
2042                                                   <taxonomy>
2043                                                     <id provider="uniprot">78148</id>
2044                                                     <scientific_name>Oidiodendron maius</scientific_name>
2045                                                     <rank>species</rank>
2046                                                   </taxonomy>
2047                                                 </clade>
2048                                               </clade>
2049                                             </clade>
2050                                             <clade>
2051                                               <taxonomy>
2052                                                 <id provider="uniprot">388435</id>
2053                                                 <scientific_name>Lecanoromycetidae</scientific_name>
2054                                                 <rank>subclass</rank>
2055                                               </taxonomy>
2056                                               <clade>
2057                                                 <name>CLAGRA</name>
2058                                                 <taxonomy>
2059                                                   <id provider="uniprot">27339</id>
2060                                                   <scientific_name>Cladonia grayi</scientific_name>
2061                                                   <synonym>Cladonia grayi Merr</synonym>
2062                                                   <rank>species</rank>
2063                                                   <uri>http://upload.wikimedia.org/wikipedia/commons/b/b6/Cladonia_grayi-11.jpg</uri>
2064                                                 </taxonomy>
2065                                               </clade>
2066                                               <clade>
2067                                                 <name>XANPAR</name>
2068                                                 <taxonomy>
2069                                                   <id provider="uniprot">107463</id>
2070                                                   <scientific_name>Xanthoria parietina</scientific_name>
2071                                                   <rank>species</rank>
2072                                                   <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/7/70/Xanthoria_parietina_%2806_03_31%29.jpg/800px-Xanthoria_parietina_%2806_03_31%29.jpg</uri>
2073                                                 </taxonomy>
2074                                               </clade>
2075                                             </clade>
2076                                           </clade>
2077                                           <clade>
2078                                             <taxonomy>
2079                                               <id provider="uniprot">147541</id>
2080                                               <scientific_name>Dothideomycetes</scientific_name>
2081                                               <rank>class</rank>
2082                                             </taxonomy>
2083                                             <reference doi="10.3114/sim.2009.64.01">
2084                                               <desc>A class-wide phylogenetic assessment of Dothideomycetes</desc>
2085                                             </reference>
2086                                             <clade>
2087                                               <taxonomy>
2088                                                 <id provider="uniprot">134362</id>
2089                                                 <scientific_name>Capnodiales</scientific_name>
2090                                                 <rank>order</rank>
2091                                               </taxonomy>
2092                                               <clade>
2093                                                 <taxonomy>
2094                                                   <id provider="uniprot">41254</id>
2095                                                   <scientific_name>Mycosphaerella</scientific_name>
2096                                                   <rank>genus</rank>
2097                                                 </taxonomy>
2098                                                 <clade>
2099                                                   <name>MYCFI</name>
2100                                                   <taxonomy>
2101                                                     <id provider="uniprot">83344</id>
2102                                                     <scientific_name>Mycosphaerella fijiensis</scientific_name>
2103                                                     <rank>species</rank>
2104                                                   </taxonomy>
2105                                                 </clade>
2106                                                 <clade>
2107                                                   <name>MYCGR</name>
2108                                                   <taxonomy>
2109                                                     <id provider="uniprot">54734</id>
2110                                                     <code>MYCGR</code>
2111                                                     <scientific_name>Mycosphaerella graminicola</scientific_name>
2112                                                     <common_name>Speckled leaf blotch fungus</common_name>
2113                                                     <synonym>Septoria tritici</synonym>
2114                                                     <rank>species</rank>
2115                                                   </taxonomy>
2116                                                 </clade>
2117                                                 <clade>
2118                                                   <name>MYCPJ</name>
2119                                                   <taxonomy>
2120                                                     <id provider="uniprot">64363</id>
2121                                                     <code>MYCPJ</code>
2122                                                     <scientific_name>Mycosphaerella pini</scientific_name>
2123                                                     <common_name>Red band needle blight disease fungus</common_name>
2124                                                     <synonym>Dothistroma septosporum</synonym>
2125                                                     <synonym>Dothistroma pini</synonym>
2126                                                     <rank>species</rank>
2127                                                   </taxonomy>
2128                                                 </clade>
2129                                                 <clade>
2130                                                   <name>MYCPOP</name>
2131                                                   <taxonomy>
2132                                                     <id provider="uniprot">85929</id>
2133                                                     <scientific_name>Mycosphaerella populorum</scientific_name>
2134                                                     <synonym>Septoria musiva</synonym>
2135                                                     <rank>species</rank>
2136                                                   </taxonomy>
2137                                                 </clade>
2138                                               </clade>
2139                                               <clade>
2140                                                 <name>BAUCOM</name>
2141                                                 <taxonomy>
2142                                                   <id provider="uniprot">430998</id>
2143                                                   <scientific_name>Baudoinia compniacensis</scientific_name>
2144                                                   <rank>species</rank>
2145                                                   <uri>http://www.diark.org/img/species_pict/Baudoinia_compniacensis</uri>
2146                                                 </taxonomy>
2147                                               </clade>
2148                                             </clade>
2149                                             <clade>
2150                                               <taxonomy>
2151                                                 <id provider="uniprot">715340</id>
2152                                                 <scientific_name>Pleosporineae</scientific_name>
2153                                                 <rank>suborder</rank>
2154                                               </taxonomy>
2155                                               <clade>
2156                                                 <taxonomy>
2157                                                   <id provider="uniprot">28556</id>
2158                                                   <scientific_name>Pleosporaceae</scientific_name>
2159                                                   <rank>family</rank>
2160                                                 </taxonomy>
2161                                                 <clade>
2162                                                   <name>Cochliobolus &amp; Setosphaeria</name>
2163                                                   <clade>
2164                                                     <taxonomy>
2165                                                       <id provider="uniprot">5015</id>
2166                                                       <scientific_name>Cochliobolus</scientific_name>
2167                                                       <rank>genus</rank>
2168                                                     </taxonomy>
2169                                                     <clade>
2170                                                       <name>COCHE</name>
2171                                                       <taxonomy>
2172                                                         <id provider="uniprot">5016</id>
2173                                                         <code>COCHE</code>
2174                                                         <scientific_name>Cochliobolus heterostrophus</scientific_name>
2175                                                         <synonym>Drechslera maydis</synonym>
2176                                                         <rank>species</rank>
2177                                                       </taxonomy>
2178                                                     </clade>
2179                                                     <clade>
2180                                                       <taxonomy>
2181                                                         <id provider="uniprot">45130</id>
2182                                                         <code>COCSA</code>
2183                                                         <scientific_name>Cochliobolus sativus</scientific_name>
2184                                                         <synonym>Bipolaris sorokiniana</synonym>
2185                                                         <rank>species</rank>
2186                                                         <uri>http://www.plantmanagementnetwork.org/pub/php/diagnosticguide/2003/rootrot/image/mathre6sm.jpg</uri>
2187                                                       </taxonomy>
2188                                                     </clade>
2189                                                   </clade>
2190                                                   <clade>
2191                                                     <taxonomy>
2192                                                       <id provider="uniprot">93612</id>
2193                                                       <code>SETTU</code>
2194                                                       <scientific_name>Setosphaeria turcica</scientific_name>
2195                                                       <authority>(Luttr.) K.J. Leonard &amp; Suggs, (1974)</authority>
2196                                                       <common_name>Northern corn leaf blight disease fungus</common_name>
2197                                                       <synonym>Exserohilum turcicum</synonym>
2198                                                       <synonym>Helminthosporium turcicum</synonym>
2199                                                       <rank>species</rank>
2200                                                       <uri>http://openi.nlm.nih.gov/imgs/rescaled512/3017769_1471-2229-10-103-3.png</uri>
2201                                                     </taxonomy>
2202                                                   </clade>
2203                                                 </clade>
2204                                                 <clade>
2205                                                   <name>PYRTR</name>
2206                                                   <taxonomy>
2207                                                     <id provider="uniprot">426418</id>
2208                                                     <code>PYRTR</code>
2209                                                     <scientific_name>Pyrenophora tritici-repentis (strain Pt-1C-BFP)</scientific_name>
2210                                                     <common_name>Wheat tan spot fungus</common_name>
2211                                                     <synonym>Drechslera tritici-repentis</synonym>
2212                                                   </taxonomy>
2213                                                 </clade>
2214                                               </clade>
2215                                               <clade>
2216                                                 <name>PHANO</name>
2217                                                 <taxonomy>
2218                                                   <id provider="uniprot">13684</id>
2219                                                   <code>PHANO</code>
2220                                                   <scientific_name>Phaeosphaeria nodorum</scientific_name>
2221                                                   <common_name>Glume blotch fungus</common_name>
2222                                                   <synonym>Septoria nodorum</synonym>
2223                                                   <rank>species</rank>
2224                                                 </taxonomy>
2225                                               </clade>
2226                                             </clade>
2227                                           </clade>
2228                                         </clade>
2229                                         <clade>
2230                                           <taxonomy>
2231                                             <id provider="uniprot">28568</id>
2232                                             <scientific_name>Trichocomaceae</scientific_name>
2233                                             <rank>family</rank>
2234                                           </taxonomy>
2235                                           <clade>
2236                                             <name>Neosartorya_Emericella</name>
2237                                             <clade>
2238                                               <name>EMENI</name>
2239                                               <taxonomy>
2240                                                 <id provider="eol">195546</id>
2241                                                 <code>EMENI</code>
2242                                                 <scientific_name>Emericella nidulans</scientific_name>
2243                                                 <authority>Vuill. 1927</authority>
2244                                                 <synonym>Aspergillus nidulans</synonym>
2245                                                 <rank>species</rank>
2246                                               </taxonomy>
2247                                             </clade>
2248                                             <clade>
2249                                               <name>NEOFI</name>
2250                                               <taxonomy>
2251                                                 <id provider="uniprot">331117</id>
2252                                                 <code>NEOFI</code>
2253                                                 <scientific_name>Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181)</scientific_name>
2254                                                 <synonym>Aspergillus fischerianus</synonym>
2255                                               </taxonomy>
2256                                             </clade>
2257                                           </clade>
2258                                           <clade>
2259                                             <taxonomy>
2260                                               <id provider="uniprot">5052</id>
2261                                               <scientific_name>Aspergillus</scientific_name>
2262                                               <rank>genus</rank>
2263                                             </taxonomy>
2264                                             <clade>
2265                                               <taxonomy>
2266                                                 <scientific_name>Aspergillus flavus</scientific_name>
2267                                               </taxonomy>
2268                                               <clade>
2269                                                 <taxonomy>
2270                                                   <id provider="uniprot">5059</id>
2271                                                   <code>ASPFL</code>
2272                                                   <scientific_name>Aspergillus flavus</scientific_name>
2273                                                   <authority>Link 1809</authority>
2274                                                   <synonym>Petromyces flavus</synonym>
2275                                                   <rank>species</rank>
2276                                                   <uri>http://www.schoolproject2.ewebsite.com/img/original/21/aspergillus-flavus.jpg</uri>
2277                                                 </taxonomy>
2278                                               </clade>
2279                                               <clade>
2280                                                 <taxonomy>
2281                                                   <id provider="uniprot">332952</id>
2282                                                   <code>ASPFN</code>
2283                                                   <scientific_name>Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC 167)</scientific_name>
2284                                                   <synonym>Aspergillus flavus NRRL3357</synonym>
2285                                                 </taxonomy>
2286                                               </clade>
2287                                             </clade>
2288                                             <clade>
2289                                               <name>ASPNG</name>
2290                                               <taxonomy>
2291                                                 <id provider="uniprot">5061</id>
2292                                                 <code>ASPNG</code>
2293                                                 <scientific_name>Aspergillus niger</scientific_name>
2294                                                 <rank>species</rank>
2295                                               </taxonomy>
2296                                             </clade>
2297                                           </clade>
2298                                         </clade>
2299                                       </clade>
2300                                       <clade>
2301                                         <taxonomy>
2302                                           <id provider="uniprot">33183</id>
2303                                           <scientific_name>Onygenales</scientific_name>
2304                                           <rank>order</rank>
2305                                         </taxonomy>
2306                                         <clade>
2307                                           <name>COCIM</name>
2308                                           <taxonomy>
2309                                             <id provider="uniprot">5501</id>
2310                                             <code>COCIM</code>
2311                                             <scientific_name>Coccidioides immitis</scientific_name>
2312                                             <common_name>Valley fever fungus</common_name>
2313                                             <rank>species</rank>
2314                                           </taxonomy>
2315                                         </clade>
2316                                         <clade>
2317                                           <name>UNCRE</name>
2318                                           <taxonomy>
2319                                             <id provider="uniprot">336963</id>
2320                                             <code>UNCRE</code>
2321                                             <scientific_name>Uncinocarpus reesii (strain UAMH 1704)</scientific_name>
2322                                           </taxonomy>
2323                                         </clade>
2324                                       </clade>
2325                                     </clade>
2326                                     <clade>
2327                                       <taxonomy>
2328                                         <id provider="uniprot">656061</id>
2329                                         <code>TUBMM</code>
2330                                         <scientific_name>Tuber melanosporum (strain Mel28)</scientific_name>
2331                                         <common_name>Perigord black truffle</common_name>
2332                                         <synonym>Tuber melanosporum Mel28</synonym>
2333                                         <uri>http://www.trufamania.com/trufas/Tuber%20melanosporum02.jpg</uri>
2334                                       </taxonomy>
2335                                     </clade>
2336                                   </clade>
2337                                   <clade>
2338                                     <taxonomy>
2339                                       <id provider="uniprot">4892</id>
2340                                       <scientific_name>Saccharomycetales</scientific_name>
2341                                       <common_name>budding yeasts</common_name>
2342                                       <rank>order</rank>
2343                                     </taxonomy>
2344                                     <clade>
2345                                       <name>Candida &amp; Debaryomyces &amp; Saccharomycetacea</name>
2346                                       <clade>
2347                                         <taxonomy>
2348                                           <id provider="uniprot">4893</id>
2349                                           <scientific_name>Saccharomycetaceae</scientific_name>
2350                                           <rank>family</rank>
2351                                         </taxonomy>
2352                                         <clade>
2353                                           <name>Saccharomyces_Pichia</name>
2354                                           <clade>
2355                                             <name>Saccharomyces</name>
2356                                             <clade>
2357                                               <name>SACCA</name>
2358                                               <taxonomy>
2359                                                 <id provider="uniprot">27288</id>
2360                                                 <code>SACCA</code>
2361                                                 <scientific_name>Saccharomyces castellii</scientific_name>
2362                                                 <common_name>Yeast</common_name>
2363                                                 <synonym>Saccharomyces castellii</synonym>
2364                                                 <rank>species</rank>
2365                                               </taxonomy>
2366                                             </clade>
2367                                             <clade>
2368                                               <name>YEAST</name>
2369                                               <taxonomy>
2370                                                 <id provider="uniprot">4932</id>
2371                                                 <code>YEAST</code>
2372                                                 <scientific_name>Saccharomyces cerevisiae</scientific_name>
2373                                                 <common_name>Baker&apos;s yeast</common_name>
2374                                                 <rank>species</rank>
2375                                               </taxonomy>
2376                                             </clade>
2377                                           </clade>
2378                                           <clade>
2379                                             <name>PICAN</name>
2380                                             <taxonomy>
2381                                               <id provider="uniprot">4905</id>
2382                                               <code>PICAN</code>
2383                                               <scientific_name>Pichia angusta</scientific_name>
2384                                               <common_name>Yeast</common_name>
2385                                               <synonym>Hansenula polymorpha</synonym>
2386                                               <rank>species</rank>
2387                                             </taxonomy>
2388                                           </clade>
2389                                         </clade>
2390                                         <clade>
2391                                           <name>Kluyveromyces &amp; Ashbya</name>
2392                                           <clade>
2393                                             <name>Kluyveromyces</name>
2394                                             <clade>
2395                                               <name>KLULA</name>
2396                                               <taxonomy>
2397                                                 <id provider="uniprot">28985</id>
2398                                                 <code>KLULA</code>
2399                                                 <scientific_name>Kluyveromyces lactis</scientific_name>
2400                                                 <common_name>Yeast</common_name>
2401                                                 <synonym>Candida sphaerica</synonym>
2402                                                 <rank>species</rank>
2403                                               </taxonomy>
2404                                             </clade>
2405                                             <clade>
2406                                               <name>KLUWA</name>
2407                                               <taxonomy>
2408                                                 <id provider="uniprot">4914</id>
2409                                                 <code>KLUWA</code>
2410                                                 <scientific_name>Kluyveromyces waltii</scientific_name>
2411                                                 <common_name>Yeast</common_name>
2412                                                 <rank>species</rank>
2413                                               </taxonomy>
2414                                             </clade>
2415                                           </clade>
2416                                           <clade>
2417                                             <name>ASHGO</name>
2418                                             <taxonomy>
2419                                               <id provider="uniprot">33169</id>
2420                                               <code>ASHGO</code>
2421                                               <scientific_name>Ashbya gossypii</scientific_name>
2422                                               <common_name>Yeast</common_name>
2423                                               <synonym>Eremothecium gossypii</synonym>
2424                                               <rank>species</rank>
2425                                             </taxonomy>
2426                                           </clade>
2427                                         </clade>
2428                                       </clade>
2429                                       <clade>
2430                                         <name>Candida &amp; Debaryomyces</name>
2431                                         <clade>
2432                                           <taxonomy>
2433                                             <id provider="uniprot">5475</id>
2434                                             <scientific_name>Candida</scientific_name>
2435                                             <rank>genus</rank>
2436                                           </taxonomy>
2437                                           <clade>
2438                                             <name>CANAL</name>
2439                                             <taxonomy>
2440                                               <id provider="uniprot">5476</id>
2441                                               <code>CANAL</code>
2442                                               <scientific_name>Candida albicans</scientific_name>
2443                                               <common_name>Yeast</common_name>
2444                                               <rank>species</rank>
2445                                             </taxonomy>
2446                                           </clade>
2447                                           <clade>
2448                                             <name>CANTR</name>
2449                                             <taxonomy>
2450                                               <id provider="uniprot">5482</id>
2451                                               <code>CANTR</code>
2452                                               <scientific_name>Candida tropicalis</scientific_name>
2453                                               <common_name>Yeast</common_name>
2454                                               <rank>species</rank>
2455                                             </taxonomy>
2456                                           </clade>
2457                                         </clade>
2458                                         <clade>
2459                                           <name>DEBHA</name>
2460                                           <taxonomy>
2461                                             <id provider="uniprot">4959</id>
2462                                             <code>DEBHA</code>
2463                                             <scientific_name>Debaryomyces hansenii</scientific_name>
2464                                             <common_name>Yeast</common_name>
2465                                             <synonym>Torulaspora hansenii</synonym>
2466                                             <rank>species</rank>
2467                                           </taxonomy>
2468                                         </clade>
2469                                       </clade>
2470                                     </clade>
2471                                     <clade>
2472                                       <name>YARLI</name>
2473                                       <taxonomy>
2474                                         <id provider="uniprot">4952</id>
2475                                         <code>YARLI</code>
2476                                         <scientific_name>Yarrowia lipolytica</scientific_name>
2477                                         <synonym>Candida lipolytica</synonym>
2478                                         <rank>species</rank>
2479                                       </taxonomy>
2480                                     </clade>
2481                                   </clade>
2482                                 </clade>
2483                                 <clade>
2484                                   <taxonomy>
2485                                     <id provider="uniprot">451866</id>
2486                                     <scientific_name>Taphrinomycotina</scientific_name>
2487                                     <rank>subphylum</rank>
2488                                   </taxonomy>
2489                                   <clade>
2490                                     <name>Pneumocystidomycetes &amp; Schizosaccharomycetes</name>
2491                                     <clade>
2492                                       <taxonomy>
2493                                         <id provider="uniprot">4895</id>
2494                                         <scientific_name>Schizosaccharomyces</scientific_name>
2495                                         <rank>genus</rank>
2496                                       </taxonomy>
2497                                       <clade>
2498                                         <name>SCHJP</name>
2499                                         <taxonomy>
2500                                           <id provider="uniprot">4897</id>
2501                                           <code>SCHJP</code>
2502                                           <scientific_name>Schizosaccharomyces japonicus</scientific_name>
2503                                           <common_name>Fission yeast</common_name>
2504                                           <rank>species</rank>
2505                                         </taxonomy>
2506                                       </clade>
2507                                       <clade>
2508                                         <taxonomy>
2509                                           <id provider="uniprot">4899</id>
2510                                           <code>SCHOT</code>
2511                                           <scientific_name>Schizosaccharomyces octosporus</scientific_name>
2512                                           <common_name>Fission yeast</common_name>
2513                                           <rank>species</rank>
2514                                           <uri>http://www.dipbot.unict.it/sistematica/Immagini/12002.JPG</uri>
2515                                         </taxonomy>
2516                                       </clade>
2517                                       <clade>
2518                                         <name>SCHPO</name>
2519                                         <taxonomy>
2520                                           <id provider="uniprot">4896</id>
2521                                           <code>SCHPO</code>
2522                                           <scientific_name>Schizosaccharomyces pombe</scientific_name>
2523                                           <common_name>Fission yeast</common_name>
2524                                           <rank>species</rank>
2525                                         </taxonomy>
2526                                       </clade>
2527                                     </clade>
2528                                     <clade>
2529                                       <name>PNECA</name>
2530                                       <taxonomy>
2531                                         <id provider="uniprot">4754</id>
2532                                         <code>PNECA</code>
2533                                         <scientific_name>Pneumocystis carinii</scientific_name>
2534                                         <rank>species</rank>
2535                                       </taxonomy>
2536                                     </clade>
2537                                   </clade>
2538                                   <clade>
2539                                     <name>SAICOM</name>
2540                                     <taxonomy>
2541                                       <id provider="uniprot">5606</id>
2542                                       <scientific_name>Saitoella complicata</scientific_name>
2543                                       <rank>species</rank>
2544                                     </taxonomy>
2545                                   </clade>
2546                                 </clade>
2547                               </clade>
2548                               <clade>
2549                                 <taxonomy>
2550                                   <id provider="uniprot">5204</id>
2551                                   <scientific_name>Basidiomycota</scientific_name>
2552                                   <rank>phylum</rank>
2553                                 </taxonomy>
2554                                 <clade>
2555                                   <name>Agaricomycotina &amp; Ustilaginomycotina &amp; Pucciniomycotina</name>
2556                                   <clade>
2557                                     <name>Agaricomycotina &amp; Ustilaginomycotina</name>
2558                                     <clade>
2559                                       <taxonomy>
2560                                         <id provider="uniprot">5302</id>
2561                                         <scientific_name>Agaricomycotina</scientific_name>
2562                                       </taxonomy>
2563                                       <clade>
2564                                         <taxonomy>
2565                                           <id provider="uniprot">155619</id>
2566                                           <scientific_name>Homobasidiomycetes</scientific_name>
2567                                           <rank>class</rank>
2568                                         </taxonomy>
2569                                         <reference doi="10.1098/rspb.2002.2123">
2570                                           <desc>Evolution of complex fruiting–body morphologies in homobasidiomycetes</desc>
2571                                         </reference>
2572                                         <clade>
2573                                           <name>Agaricomycetidae &amp; Gloeophyllum &amp; Aphyllophorales</name>
2574                                           <clade>
2575                                             <name>Agaricomycetidae &amp; Gloeophyllum</name>
2576                                             <clade>
2577                                               <taxonomy>
2578                                                 <id provider="uniprot">452333</id>
2579                                                 <scientific_name>Agaricomycetidae</scientific_name>
2580                                                 <rank>subclass</rank>
2581                                               </taxonomy>
2582                                               <clade>
2583                                                 <name>Agaricales &amp; Boletales</name>
2584                                                 <clade>
2585                                                   <taxonomy>
2586                                                     <id provider="uniprot">5338</id>
2587                                                     <scientific_name>Agaricales</scientific_name>
2588                                                     <rank>order</rank>
2589                                                   </taxonomy>
2590                                                   <clade>
2591                                                     <name>Agaricus &amp; Coprinopsis &amp; Laccaria &amp; Pleurotus</name>
2592                                                     <clade>
2593                                                       <name>Agaricus &amp; Coprinopsis &amp; Laccaria</name>
2594                                                       <clade>
2595                                                         <name>Agaricus &amp; Coprinopsis</name>
2596                                                         <clade>
2597                                                           <name>AGABB</name>
2598                                                           <taxonomy>
2599                                                             <id provider="uniprot">192524</id>
2600                                                             <scientific_name>Agaricus bisporus var. burnettii</scientific_name>
2601                                                             <uri>http://www.mykoweb.com/CAF/photos/Agaricus_bisporus(fs-03).jpg</uri>
2602                                                           </taxonomy>
2603                                                         </clade>
2604                                                         <clade>
2605                                                           <name>COPCI</name>
2606                                                           <taxonomy>
2607                                                             <id provider="uniprot">5346</id>
2608                                                             <code>COPCI</code>
2609                                                             <scientific_name>Coprinopsis cinerea</scientific_name>
2610                                                             <common_name>Inky cap fungus</common_name>
2611                                                             <synonym>Hormographiella aspergillata</synonym>
2612                                                             <rank>species</rank>
2613                                                             <uri>http://upload.wikimedia.org/wikipedia/commons/e/e9/Coprinopsis.cinerea.-.lindsey.jpg</uri>
2614                                                           </taxonomy>
2615                                                         </clade>
2616                                                       </clade>
2617                                                       <clade>
2618                                                         <taxonomy>
2619                                                           <id provider="uniprot">29883</id>
2620                                                           <code>LACBI</code>
2621                                                           <scientific_name>Laccaria bicolor</scientific_name>
2622                                                           <common_name>Bicoloured deceiver</common_name>
2623                                                           <synonym>Laccaria laccata var. bicolor</synonym>
2624                                                           <rank>species</rank>
2625                                                           <uri>http://botit.botany.wisc.edu/toms_fungi/images/L_bicolor_NM.JPG</uri>
2626                                                         </taxonomy>
2627                                                       </clade>
2628                                                     </clade>
2629                                                     <clade>
2630                                                       <name>GYMLUX</name>
2631                                                       <taxonomy>
2632                                                         <id provider="uniprot">206324</id>
2633                                                         <scientific_name>Gymnopus luxurians</scientific_name>
2634                                                         <rank>species</rank>
2635                                                         <uri>http://www.mushroomexpert.com/images/kuo3/gymnopus_luxurians_02.jpg</uri>
2636                                                       </taxonomy>
2637                                                     </clade>
2638                                                   </clade>
2639                                                   <clade>
2640                                                     <name>PLEOS</name>
2641                                                     <taxonomy>
2642                                                       <id provider="uniprot">5322</id>
2643                                                       <code>PLEOS</code>
2644                                                       <scientific_name>Pleurotus ostreatus</scientific_name>
2645                                                       <common_name>Oyster mushroom</common_name>
2646                                                       <synonym>White-rot fungus</synonym>
2647                                                       <rank>species</rank>
2648                                                       <uri>http://botit.botany.wisc.edu/toms_fungi/images/post1.jpg</uri>
2649                                                     </taxonomy>
2650                                                   </clade>
2651                                                 </clade>
2652                                                 <clade>
2653                                                   <taxonomy>
2654                                                     <id provider="uniprot">68889</id>
2655                                                     <scientific_name>Boletales</scientific_name>
2656                                                     <synonym>Melanogastrales</synonym>
2657                                                     <synonym>Sclerodermatales</synonym>
2658                                                     <rank>order</rank>
2659                                                   </taxonomy>
2660                                                   <clade>
2661                                                     <taxonomy>
2662                                                       <id provider="uniprot">227334</id>
2663                                                       <scientific_name>Coniophorineae</scientific_name>
2664                                                       <rank>suborder</rank>
2665                                                     </taxonomy>
2666                                                     <clade>
2667                                                       <name>CONPUT</name>
2668                                                       <taxonomy>
2669                                                         <id provider="uniprot">80637</id>
2670                                                         <scientific_name>Coniophora puteana</scientific_name>
2671                                                         <authority>Schum. ex Fries</authority>
2672                                                         <common_name>cellar fungus</common_name>
2673                                                         <rank>species</rank>
2674                                                         <uri>http://genome.jgi-psf.org/public/Conpu1/P1240066_dp.jpg</uri>
2675                                                       </taxonomy>
2676                                                     </clade>
2677                                                     <clade>
2678                                                       <name>SERLAC</name>
2679                                                       <taxonomy>
2680                                                         <id provider="uniprot">85982</id>
2681                                                         <scientific_name>Serpula lacrymans</scientific_name>
2682                                                         <common_name>dry rot fungus</common_name>
2683                                                         <rank>species</rank>
2684                                                         <uri>http://www.anbg.gov.au/fungi/images/0160.jpg</uri>
2685                                                       </taxonomy>
2686                                                     </clade>
2687                                                   </clade>
2688                                                   <clade>
2689                                                     <name>HYDPIN</name>
2690                                                     <taxonomy>
2691                                                       <id provider="uniprot">388859</id>
2692                                                       <scientific_name>Hydnomerulius pinastri</scientific_name>
2693                                                       <common_name>Spiny dry rot fungus</common_name>
2694                                                       <rank>species</rank>
2695                                                       <uri>http://mycoweb-stv.narod.ru/fungi/Submitted/STV1/Hydnomerulius_pinastri_1_STV_20100913.jpg</uri>
2696                                                     </taxonomy>
2697                                                   </clade>
2698                                                 </clade>
2699                                               </clade>
2700                                               <clade>
2701                                                 <name>JAAARG</name>
2702                                                 <taxonomy>
2703                                                   <id provider="uniprot">202697</id>
2704                                                   <scientific_name>Jaapia argillacea</scientific_name>
2705                                                   <rank>species</rank>
2706                                                   <uri>http://mycor.nancy.inra.fr/blogGenomes/wp-content/uploads/2012/08/IMG_21261.jpg</uri>
2707                                                 </taxonomy>
2708                                               </clade>
2709                                             </clade>
2710                                             <clade>
2711                                               <name>GLOTR</name>
2712                                               <taxonomy>
2713                                                 <id provider="uniprot">104355</id>
2714                                                 <code>GLOTR</code>
2715                                                 <scientific_name>Gloeophyllum trabeum</scientific_name>
2716                                                 <common_name>Brown rot fungus</common_name>
2717                                                 <rank>species</rank>
2718                                                 <uri>http://www.commanster.eu/commanster/Mushrooms/Basidio/SpBasidio/Gloeophyllum.trabeum.jpg</uri>
2719                                               </taxonomy>
2720                                             </clade>
2721                                           </clade>
2722                                           <clade>
2723                                             <taxonomy>
2724                                               <id provider="uniprot">5303</id>
2725                                               <scientific_name>Aphyllophorales</scientific_name>
2726                                               <authority>Gäum. (1926)</authority>
2727                                               <common_name>Shelf Fungi</common_name>
2728                                               <synonym>Polyporales</synonym>
2729                                               <rank>order</rank>
2730                                             </taxonomy>
2731                                             <clade>
2732                                               <taxonomy>
2733                                                 <id provider="uniprot">83233</id>
2734                                                 <scientific_name>Coriolaceae</scientific_name>
2735                                                 <rank>family</rank>
2736                                               </taxonomy>
2737                                               <reference doi="10.1017/S1477200005001623">
2738                                                 <desc>The phylogenetic distribution of resupinate forms across the major clades of mushroom-forming fungi (Homobasidiomycetes)</desc>
2739                                               </reference>
2740                                               <reference>
2741                                               </reference>
2742                                               <reference>
2743                                               </reference>
2744                                               <clade>
2745                                                 <name>Postia &amp; Fomitopsis &amp; Wolfiporia &amp; Trametes</name>
2746                                                 <clade>
2747                                                   <name>Antrodia clade</name>
2748                                                   <taxonomy>
2749                                                     <common_name>Antrodia clade</common_name>
2750                                                   </taxonomy>
2751                                                   <clade>
2752                                                     <name>FOMPIN</name>
2753                                                     <taxonomy>
2754                                                       <id provider="uniprot">40483</id>
2755                                                       <scientific_name>Fomitopsis pinicola</scientific_name>
2756                                                       <authority>P. Karst. 1881</authority>
2757                                                       <common_name>Red banded polypore</common_name>
2758                                                       <synonym>Fomes pinicola</synonym>
2759                                                       <rank>species</rank>
2760                                                       <uri>http://content6.eol.org/content/2009/06/07/01/48471_large.jpg</uri>
2761                                                     </taxonomy>
2762                                                   </clade>
2763                                                   <clade>
2764                                                     <name>POSPL</name>
2765                                                     <taxonomy>
2766                                                       <id provider="uniprot">104341</id>
2767                                                       <scientific_name>Postia placenta</scientific_name>
2768                                                       <rank>species</rank>
2769                                                       <uri>http://www.commanster.eu/commanster/Mushrooms/Polypore/SuPolypore/Postia.placenta.jpg</uri>
2770                                                     </taxonomy>
2771                                                   </clade>
2772                                                 </clade>
2773                                                 <clade>
2774                                                   <name>core polyporoid clade</name>
2775                                                   <taxonomy>
2776                                                     <common_name>core polyporoid clade</common_name>
2777                                                   </taxonomy>
2778                                                   <clade>
2779                                                     <name>TRAVE</name>
2780                                                     <taxonomy>
2781                                                       <id provider="uniprot">5325</id>
2782                                                       <code>TRAVE</code>
2783                                                       <scientific_name>Trametes versicolor</scientific_name>
2784                                                       <authority>(L.) Lloyd 1921</authority>
2785                                                       <common_name>White-rot fungus</common_name>
2786                                                       <synonym>Coriolus versicolor</synonym>
2787                                                       <synonym>Bjerkandera versicolor</synonym>
2788                                                       <rank>species</rank>
2789                                                       <uri>http://www.mykoweb.com/CAF/photos/Trametes_versicolor(bab-1).jpg</uri>
2790                                                       <uri>http://www.mykoweb.com/CAF/photos/Trametes_versicolor(bab-2).jpg</uri>
2791                                                       <uri>http://www.mykoweb.com/CAF/photos/Trametes_versicolor(mgw-01).jpg</uri>
2792                                                       <uri>http://genome.jgi-psf.org/public/Trave1/Trametes_versicolor.JPG</uri>
2793                                                     </taxonomy>
2794                                                   </clade>
2795                                                   <clade>
2796                                                     <name>WOLCOC</name>
2797                                                     <taxonomy>
2798                                                       <id provider="uniprot">81056</id>
2799                                                       <scientific_name>Wolfiporia cocos</scientific_name>
2800                                                       <rank>species</rank>
2801                                                       <uri>http://toolate.s7.coreserver.jp/kinoko/fungi/wolfiporia_cocos/w_cocos_002.jpg</uri>
2802                                                     </taxonomy>
2803                                                   </clade>
2804                                                 </clade>
2805                                               </clade>
2806                                               <clade>
2807                                                 <name>CERSU</name>
2808                                                 <taxonomy>
2809                                                   <id provider="uniprot">42742</id>
2810                                                   <code>CERSU</code>
2811                                                   <scientific_name>Ceriporiopsis subvermispora</scientific_name>
2812                                                   <rank>species</rank>
2813                                                 </taxonomy>
2814                                               </clade>
2815                                             </clade>
2816                                             <clade>
2817                                               <name>DICSQU</name>
2818                                               <taxonomy>
2819                                                 <id provider="uniprot">114155</id>
2820                                                 <scientific_name>Dichomitus squalens</scientific_name>
2821                                                 <authority>(P. Karst.) D. A. Reid 1965</authority>
2822                                                 <common_name>Red rot</common_name>
2823                                                 <synonym>Polyporus anceps</synonym>
2824                                                 <rank>species</rank>
2825                                                 <uri>http://www.fs.fed.us/r3/resources/health/field-guide/images/large/sds-f199-large.jpg</uri>
2826                                               </taxonomy>
2827                                             </clade>
2828                                           </clade>
2829                                         </clade>
2830                                         <clade>
2831                                           <name>HETAN</name>
2832                                           <taxonomy>
2833                                             <id provider="uniprot">13563</id>
2834                                             <code>HETAN</code>
2835                                             <scientific_name>Heterobasidion annosum</scientific_name>
2836                                             <common_name>Root rot fungus</common_name>
2837                                             <rank>species</rank>
2838                                           </taxonomy>
2839                                         </clade>
2840                                       </clade>
2841                                       <clade>
2842                                         <taxonomy>
2843                                           <id provider="uniprot">5215</id>
2844                                           <scientific_name>Tremellaceae</scientific_name>
2845                                           <rank>family</rank>
2846                                         </taxonomy>
2847                                         <clade>
2848                                           <name>CRYNE</name>
2849                                           <taxonomy>
2850                                             <id provider="uniprot">5207</id>
2851                                             <code>CRYNE</code>
2852                                             <scientific_name>Cryptococcus neoformans</scientific_name>
2853                                             <synonym>Filobasidiella neoformans</synonym>
2854                                             <rank>species</rank>
2855                                           </taxonomy>
2856                                         </clade>
2857                                         <clade>
2858                                           <name>TREME</name>
2859                                           <taxonomy>
2860                                             <id provider="eol">1029985</id>
2861                                             <code>TREME</code>
2862                                             <scientific_name>Tremella mesenterica</scientific_name>
2863                                             <authority>Pers. 1800</authority>
2864                                             <common_name>Jelly fungus</common_name>
2865                                             <synonym>Yellow Brain</synonym>
2866                                             <synonym>Tremella lutescens</synonym>
2867                                             <rank>species</rank>
2868                                           </taxonomy>
2869                                         </clade>
2870                                       </clade>
2871                                     </clade>
2872                                     <clade>
2873                                       <taxonomy>
2874                                         <id provider="uniprot">452284</id>
2875                                         <scientific_name>Ustilaginomycotina</scientific_name>
2876                                         <rank>subphylum</rank>
2877                                       </taxonomy>
2878                                       <clade>
2879                                         <taxonomy>
2880                                           <id provider="uniprot">425265</id>
2881                                           <code>MALGO</code>
2882                                           <scientific_name>Malassezia globosa (strain ATCC MYA-4612 / CBS 7966)</scientific_name>
2883                                           <common_name>Dandruff-associated fungus</common_name>
2884                                         </taxonomy>
2885                                       </clade>
2886                                       <clade>
2887                                         <name>USTMA</name>
2888                                         <taxonomy>
2889                                           <id provider="uniprot">5270</id>
2890                                           <code>USTMA</code>
2891                                           <scientific_name>Ustilago maydis</scientific_name>
2892                                           <common_name>Smut fungus</common_name>
2893                                           <rank>species</rank>
2894                                         </taxonomy>
2895                                       </clade>
2896                                     </clade>
2897                                   </clade>
2898                                   <clade>
2899                                     <taxonomy>
2900                                       <id provider="uniprot">29000</id>
2901                                       <scientific_name>Pucciniomycotina</scientific_name>
2902                                       <rank>subphylum</rank>
2903                                     </taxonomy>
2904                                     <clade>
2905                                       <taxonomy>
2906                                         <id provider="uniprot">5258</id>
2907                                         <scientific_name>Pucciniales</scientific_name>
2908                                         <common_name>rusts</common_name>
2909                                         <rank>order</rank>
2910                                       </taxonomy>
2911                                       <clade>
2912                                         <name>MELLP</name>
2913                                         <taxonomy>
2914                                           <id provider="eol">156696</id>
2915                                           <code>MELLP</code>
2916                                           <scientific_name>Melampsora laricis-populina</scientific_name>
2917                                           <authority>Kleb. 1902</authority>
2918                                           <synonym>Melampsora larici-populina</synonym>
2919                                           <synonym>Melampsora laricipopulina</synonym>
2920                                           <rank>species</rank>
2921                                         </taxonomy>
2922                                       </clade>
2923                                       <clade>
2924                                         <name>PUCGR</name>
2925                                         <taxonomy>
2926                                           <id provider="eol">1029947</id>
2927                                           <code>PUCGR</code>
2928                                           <scientific_name>Puccinia graminis</scientific_name>
2929                                           <authority>Pers. 1794</authority>
2930                                           <common_name>Black stem rust fungus</common_name>
2931                                           <synonym>Wheat rust</synonym>
2932                                           <rank>species</rank>
2933                                         </taxonomy>
2934                                       </clade>
2935                                     </clade>
2936                                     <clade>
2937                                       <taxonomy>
2938                                         <id provider="uniprot">89013</id>
2939                                         <scientific_name>mitosporic Sporidiobolales</scientific_name>
2940                                       </taxonomy>
2941                                       <clade>
2942                                         <name>RHOGR</name>
2943                                         <taxonomy>
2944                                           <id provider="uniprot">29898</id>
2945                                           <code>RHOGR</code>
2946                                           <scientific_name>Rhodotorula graminis</scientific_name>
2947                                           <common_name>Yeast</common_name>
2948                                           <rank>species</rank>
2949                                         </taxonomy>
2950                                       </clade>
2951                                       <clade>
2952                                         <name>SPORO</name>
2953                                         <taxonomy>
2954                                           <id provider="eol">1013696</id>
2955                                           <scientific_name>Sporobolomyces roseus</scientific_name>
2956                                           <authority>Kluyver &amp; C. B. Niel 1924</authority>
2957                                           <rank>species</rank>
2958                                         </taxonomy>
2959                                       </clade>
2960                                     </clade>
2961                                   </clade>
2962                                 </clade>
2963                                 <clade>
2964                                   <name>WALSE</name>
2965                                   <taxonomy>
2966                                     <id provider="uniprot">148960</id>
2967                                     <code>WALSE</code>
2968                                     <scientific_name>Wallemia sebi</scientific_name>
2969                                     <rank>species</rank>
2970                                   </taxonomy>
2971                                 </clade>
2972                               </clade>
2973                             </clade>
2974                             <clade>
2975                               <taxonomy>
2976                                 <id provider="uniprot">451507</id>
2977                                 <scientific_name>Mucoromycotina</scientific_name>
2978                                 <rank>subphylum</rank>
2979                               </taxonomy>
2980                               <clade>
2981                                 <taxonomy>
2982                                   <id provider="uniprot">34489</id>
2983                                   <scientific_name>Mucoraceae</scientific_name>
2984                                   <rank>family</rank>
2985                                 </taxonomy>
2986                                 <clade>
2987                                   <name>MUCCI</name>
2988                                   <taxonomy>
2989                                     <id provider="uniprot">36080</id>
2990                                     <code>MUCCI</code>
2991                                     <scientific_name>Mucor circinelloides</scientific_name>
2992                                     <synonym>Mucor griseo-roseus</synonym>
2993                                     <rank>species</rank>
2994                                   </taxonomy>
2995                                 </clade>
2996                                 <clade>
2997                                   <name>PHYBL</name>
2998                                   <taxonomy>
2999                                     <id provider="uniprot">4837</id>
3000                                     <code>PHYBL</code>
3001                                     <scientific_name>Phycomyces blakesleeanus</scientific_name>
3002                                     <rank>species</rank>
3003                                   </taxonomy>
3004                                 </clade>
3005                                 <clade>
3006                                   <name>RHIOR</name>
3007                                   <taxonomy>
3008                                     <id provider="uniprot">64495</id>
3009                                     <code>RHIOR</code>
3010                                     <scientific_name>Rhizopus oryzae</scientific_name>
3011                                     <synonym>Rhizopus delemar</synonym>
3012                                     <rank>species</rank>
3013                                   </taxonomy>
3014                                 </clade>
3015                               </clade>
3016                               <clade>
3017                                 <name>MORVER</name>
3018                                 <taxonomy>
3019                                   <id provider="uniprot">78898</id>
3020                                   <scientific_name>Mortierella verticillata</scientific_name>
3021                                   <rank>species</rank>
3022                                   <uri>http://www.diark.org/img/species_pict/Mortierella_verticillata</uri>
3023                                 </taxonomy>
3024                               </clade>
3025                             </clade>
3026                           </clade>
3027                           <clade>
3028                             <name>COEREV</name>
3029                             <taxonomy>
3030                               <id provider="uniprot">61392</id>
3031                               <scientific_name>Coemansia reversa</scientific_name>
3032                               <rank>species</rank>
3033                             </taxonomy>
3034                           </clade>
3035                         </clade>
3036                         <clade>
3037                           <taxonomy>
3038                             <id provider="uniprot">28583</id>
3039                             <code>ALLMA</code>
3040                             <scientific_name>Allomyces macrogynus</scientific_name>
3041                             <rank>species</rank>
3042                           </taxonomy>
3043                         </clade>
3044                       </clade>
3045                       <clade>
3046                         <taxonomy>
3047                           <id provider="uniprot">4761</id>
3048                           <scientific_name>Chytridiomycota</scientific_name>
3049                           <common_name>chytrids</common_name>
3050                           <synonym>Mastigomycotina</synonym>
3051                           <rank>phylum</rank>
3052                         </taxonomy>
3053                         <clade>
3054                           <taxonomy>
3055                             <id provider="uniprot">451435</id>
3056                             <scientific_name>Chytridiomycetes</scientific_name>
3057                             <rank>class</rank>
3058                           </taxonomy>
3059                           <clade>
3060                             <taxonomy>
3061                               <id provider="uniprot">109871</id>
3062                               <code>BATDE</code>
3063                               <scientific_name>Batrachochytrium dendrobatidis</scientific_name>
3064                               <common_name>Frog chytrid fungus</common_name>
3065                               <rank>species</rank>
3066                             </taxonomy>
3067                           </clade>
3068                           <clade>
3069                             <taxonomy>
3070                               <id provider="uniprot">109760</id>
3071                               <code>SPIPN</code>
3072                               <scientific_name>Spizellomyces punctatus</scientific_name>
3073                               <rank>species</rank>
3074                             </taxonomy>
3075                           </clade>
3076                         </clade>
3077                         <clade>
3078                           <name>GONPRO</name>
3079                           <taxonomy>
3080                             <id provider="eol">157984</id>
3081                             <scientific_name>Gonapodya prolifera</scientific_name>
3082                             <authority>A. Fisch. 1892</authority>
3083                             <rank>species</rank>
3084                             <uri>http://genome.jgi-psf.org/public/Ganpr1/Picture5.jpg</uri>
3085                           </taxonomy>
3086                         </clade>
3087                       </clade>
3088                     </clade>
3089                     <clade>
3090                       <name>PIRSPE</name>
3091                       <taxonomy>
3092                         <id provider="uniprot">73868</id>
3093                         <scientific_name>Piromyces sp. E2</scientific_name>
3094                         <rank>species</rank>
3095                         <uri>http://www.bsu.edu/classes/ruch/msa/barr/4-17.jpg</uri>
3096                       </taxonomy>
3097                     </clade>
3098                   </clade>
3099                   <clade>
3100                     <name>ENCCU</name>
3101                     <taxonomy>
3102                       <id provider="uniprot">6035</id>
3103                       <code>ENCCU</code>
3104                       <scientific_name>Encephalitozoon cuniculi</scientific_name>
3105                       <common_name>Microsporidian parasite</common_name>
3106                       <rank>species</rank>
3107                     </taxonomy>
3108                   </clade>
3109                 </clade>
3110                 <clade>
3111                   <name>Fonticula &amp; Nucleariidae</name>
3112                   <reference doi="10.1093/molbev/msp185">
3113                   </reference>
3114                   <clade>
3115                     <name>FONALB</name>
3116                     <taxonomy>
3117                       <id provider="uniprot">691883</id>
3118                       <scientific_name>Fonticula alba</scientific_name>
3119                       <synonym>Fonticula alba Worley, Raper &amp; Hohl. 1979</synonym>
3120                       <rank>species</rank>
3121                     </taxonomy>
3122                   </clade>
3123                   <clade>
3124                     <name>NUCSIM</name>
3125                     <taxonomy>
3126                       <id provider="uniprot">154970</id>
3127                       <scientific_name>Nuclearia simplex</scientific_name>
3128                       <rank>species</rank>
3129                     </taxonomy>
3130                   </clade>
3131                 </clade>
3132               </clade>
3133             </clade>
3134             <clade>
3135               <name>THETRA</name>
3136               <taxonomy>
3137                 <id provider="uniprot">529818</id>
3138                 <scientific_name>Thecamonas trahens</scientific_name>
3139                 <rank>species</rank>
3140               </taxonomy>
3141             </clade>
3142           </clade>
3143           <clade>
3144             <name>Amoebozoa</name>
3145             <taxonomy>
3146               <id provider="uniprot">554915</id>
3147               <scientific_name>Amoebozoa</scientific_name>
3148             </taxonomy>
3149             <clade>
3150               <name>Dictyostelium</name>
3151               <taxonomy>
3152                 <id provider="uniprot">5782</id>
3153                 <scientific_name>Dictyostelium</scientific_name>
3154                 <rank>genus</rank>
3155               </taxonomy>
3156               <clade>
3157                 <name>DICDI</name>
3158                 <taxonomy>
3159                   <id provider="uniprot">44689</id>
3160                   <code>DICDI</code>
3161                   <scientific_name>Dictyostelium discoideum</scientific_name>
3162                   <common_name>Slime mold</common_name>
3163                   <rank>species</rank>
3164                 </taxonomy>
3165               </clade>
3166               <clade>
3167                 <name>DICPU</name>
3168                 <taxonomy>
3169                   <id provider="uniprot">5786</id>
3170                   <code>DICPU</code>
3171                   <scientific_name>Dictyostelium purpureum</scientific_name>
3172                   <common_name>Slime mold</common_name>
3173                   <rank>species</rank>
3174                 </taxonomy>
3175               </clade>
3176             </clade>
3177             <clade>
3178               <name>ENTHI</name>
3179               <taxonomy>
3180                 <id provider="uniprot">5759</id>
3181                 <code>ENTHI</code>
3182                 <scientific_name>Entamoeba histolytica</scientific_name>
3183                 <rank>species</rank>
3184               </taxonomy>
3185             </clade>
3186           </clade>
3187         </clade>
3188         <clade>
3189           <name>Bikonta</name>
3190           <reference doi="10.1099/ijs.0.63216-0">
3191           </reference>
3192           <clade>
3193             <name>Corticata</name>
3194             <clade>
3195               <name>Archaeplastida</name>
3196               <clade>
3197                 <taxonomy>
3198                   <id provider="uniprot">33090</id>
3199                   <scientific_name>Viridiplantae</scientific_name>
3200                   <common_name>green plants</common_name>
3201                   <rank>kingdom</rank>
3202                 </taxonomy>
3203                 <clade>
3204                   <taxonomy>
3205                     <id provider="uniprot">3193</id>
3206                     <scientific_name>Embryophyta</scientific_name>
3207                   </taxonomy>
3208                   <clade>
3209                     <taxonomy>
3210                       <id provider="uniprot">58023</id>
3211                       <scientific_name>Tracheophyta</scientific_name>
3212                     </taxonomy>
3213                     <clade>
3214                       <taxonomy>
3215                         <id provider="uniprot">3398</id>
3216                         <scientific_name>Magnoliophyta</scientific_name>
3217                         <common_name>flowering plants</common_name>
3218                         <synonym>Angiospermae</synonym>
3219                       </taxonomy>
3220                       <clade>
3221                         <taxonomy>
3222                           <id provider="uniprot">71240</id>
3223                           <scientific_name>eudicotyledons</scientific_name>
3224                         </taxonomy>
3225                         <clade>
3226                           <taxonomy>
3227                             <id provider="uniprot">91827</id>
3228                             <scientific_name>core eudicotyledons</scientific_name>
3229                           </taxonomy>
3230                           <clade>
3231                             <taxonomy>
3232                               <id provider="uniprot">71275</id>
3233                               <scientific_name>rosids</scientific_name>
3234                               <rank>subclass</rank>
3235                             </taxonomy>
3236                             <clade>
3237                               <name>fabids &amp; malvids</name>
3238                               <clade>
3239                                 <taxonomy>
3240                                   <id provider="uniprot">91835</id>
3241                                   <scientific_name>fabids</scientific_name>
3242                                 </taxonomy>
3243                                 <clade>
3244                                   <name>Rosales &amp; Cucurbitales &amp; Fabales</name>
3245                                   <clade>
3246                                     <name>Rosales &amp; Cucurbitales</name>
3247                                     <clade>
3248                                       <taxonomy>
3249                                         <id provider="uniprot">3745</id>
3250                                         <scientific_name>Rosaceae</scientific_name>
3251                                         <rank>family</rank>
3252                                       </taxonomy>
3253                                       <clade>
3254                                         <name>FRAVE</name>
3255                                         <taxonomy>
3256                                           <id provider="uniprot">57918</id>
3257                                           <code>FRAVE</code>
3258                                           <scientific_name>Fragaria vesca</scientific_name>
3259                                           <common_name>Woodland strawberry</common_name>
3260                                           <synonym>Fragaria vesca L.</synonym>
3261                                           <synonym>European strawberry</synonym>
3262                                           <synonym>alpine strawberry</synonym>
3263                                           <rank>species</rank>
3264                                           <uri>http://www.boga.ruhr-uni-bochum.de/html/Fragaria.vesca.ja6.jpg</uri>
3265                                           <uri>http://caliban.mpiz-koeln.mpg.de/thome/band3/tafel_092_small.jpg</uri>
3266                                         </taxonomy>
3267                                       </clade>
3268                                       <clade>
3269                                         <name>PRUPE</name>
3270                                         <taxonomy>
3271                                           <id provider="uniprot">3760</id>
3272                                           <code>PRUPE</code>
3273                                           <scientific_name>Prunus persica</scientific_name>
3274                                           <common_name>Peach</common_name>
3275                                           <synonym>Persica vulgaris</synonym>
3276                                           <synonym>Amygdalus persica</synonym>
3277                                           <rank>species</rank>
3278                                           <uri>http://www.mezhenskyjv.narod.ru/foto_sortov/dokaz.jpg</uri>
3279                                         </taxonomy>
3280                                       </clade>
3281                                     </clade>
3282                                     <clade>
3283                                       <name>CUCSA</name>
3284                                       <taxonomy>
3285                                         <id provider="uniprot">3659</id>
3286                                         <code>CUCSA</code>
3287                                         <scientific_name>Cucumis sativus</scientific_name>
3288                                         <common_name>Cucumber</common_name>
3289                                         <rank>species</rank>
3290                                       </taxonomy>
3291                                     </clade>
3292                                   </clade>
3293                                   <clade>
3294                                     <taxonomy>
3295                                       <id provider="uniprot">3814</id>
3296                                       <scientific_name>Papilionoideae</scientific_name>
3297                                       <rank>subfamily</rank>
3298                                     </taxonomy>
3299                                     <clade>
3300                                       <name>SOYBN</name>
3301                                       <taxonomy>
3302                                         <id provider="uniprot">3847</id>
3303                                         <code>SOYBN</code>
3304                                         <scientific_name>Glycine max</scientific_name>
3305                                         <authority>cv. Wye</authority>
3306                                         <common_name>Soybean</common_name>
3307                                         <synonym>Glycine hispida</synonym>
3308                                         <rank>species</rank>
3309                                       </taxonomy>
3310                                     </clade>
3311                                     <clade>
3312                                       <name>MEDTR</name>
3313                                       <taxonomy>
3314                                         <id provider="uniprot">3880</id>
3315                                         <code>MEDTR</code>
3316                                         <scientific_name>Medicago truncatula</scientific_name>
3317                                         <common_name>Barrel medic</common_name>
3318                                         <synonym>Medicago tribuloides</synonym>
3319                                         <rank>species</rank>
3320                                         <uri>http://crdp.ac-besancon.fr/flore/FABACEAE/photos/medicago_truncatula_30.jpg</uri>
3321                                       </taxonomy>
3322                                     </clade>
3323                                   </clade>
3324                                 </clade>
3325                                 <clade>
3326                                   <taxonomy>
3327                                     <id provider="uniprot">3646</id>
3328                                     <scientific_name>Malpighiales</scientific_name>
3329                                     <rank>order</rank>
3330                                   </taxonomy>
3331                                   <clade>
3332                                     <taxonomy>
3333                                       <id provider="uniprot">3977</id>
3334                                       <scientific_name>Euphorbiaceae</scientific_name>
3335                                       <rank>family</rank>
3336                                     </taxonomy>
3337                                     <clade>
3338                                       <name>MANES</name>
3339                                       <taxonomy>
3340                                         <id provider="uniprot">3983</id>
3341                                         <code>MANES</code>
3342                                         <scientific_name>Manihot esculenta</scientific_name>
3343                                         <common_name>Tapioca</common_name>
3344                                         <synonym>Jatropha manihot</synonym>
3345                                         <rank>species</rank>
3346                                         <uri>http://upload.wikimedia.org/wikipedia/commons/9/99/Iwata_kenichi_cassava.jpg</uri>
3347                                       </taxonomy>
3348                                     </clade>
3349                                     <clade>
3350                                       <name>RICCO</name>
3351                                       <taxonomy>
3352                                         <id provider="uniprot">3988</id>
3353                                         <code>RICCO</code>
3354                                         <scientific_name>Ricinus communis</scientific_name>
3355                                         <common_name>Castor bean</common_name>
3356                                         <synonym>Ricinus sanguineus</synonym>
3357                                         <rank>species</rank>
3358                                         <uri>http://nmorganics.net/wp-content/uploads/2011/09/castor.jpg</uri>
3359                                       </taxonomy>
3360                                     </clade>
3361                                   </clade>
3362                                   <clade>
3363                                     <name>POPTR</name>
3364                                     <taxonomy>
3365                                       <id provider="uniprot">3694</id>
3366                                       <code>POPTR</code>
3367                                       <scientific_name>Populus trichocarpa</scientific_name>
3368                                       <common_name>Western balsam poplar</common_name>
3369                                       <synonym>Populus balsamifera subsp. trichocarpa</synonym>
3370                                       <rank>species</rank>
3371                                     </taxonomy>
3372                                   </clade>
3373                                 </clade>
3374                               </clade>
3375                               <clade>
3376                                 <taxonomy>
3377                                   <id provider="uniprot">91836</id>
3378                                   <scientific_name>malvids</scientific_name>
3379                                 </taxonomy>
3380                                 <clade>
3381                                   <name>Brassicales &amp; Sapindales</name>
3382                                   <clade>
3383                                     <taxonomy>
3384                                       <id provider="uniprot">3699</id>
3385                                       <scientific_name>Brassicales</scientific_name>
3386                                       <rank>order</rank>
3387                                     </taxonomy>
3388                                     <clade>
3389                                       <taxonomy>
3390                                         <id provider="uniprot">3700</id>
3391                                         <scientific_name>Brassicaceae</scientific_name>
3392                                         <rank>family</rank>
3393                                       </taxonomy>
3394                                       <clade>
3395                                         <taxonomy>
3396                                           <id provider="uniprot">3701</id>
3397                                           <scientific_name>Arabidopsis</scientific_name>
3398                                           <rank>genus</rank>
3399                                         </taxonomy>
3400                                         <clade>
3401                                           <name>ARALY</name>
3402                                           <taxonomy>
3403                                             <id provider="uniprot">59689</id>
3404                                             <code>ARALY</code>
3405                                             <scientific_name>Arabidopsis lyrata</scientific_name>
3406                                             <common_name>Lyre-leaved rock-cress</common_name>
3407                                             <rank>species</rank>
3408                                           </taxonomy>
3409                                         </clade>
3410                                         <clade>
3411                                           <name>ARATH</name>
3412                                           <taxonomy>
3413                                             <id provider="uniprot">3702</id>
3414                                             <code>ARATH</code>
3415                                             <scientific_name>Arabidopsis thaliana</scientific_name>
3416                                             <common_name>Mouse-ear cress</common_name>
3417                                             <rank>species</rank>
3418                                           </taxonomy>
3419                                         </clade>
3420                                       </clade>
3421                                       <clade>
3422                                         <taxonomy>
3423                                           <id provider="uniprot">98038</id>
3424                                           <code>THEHA</code>
3425                                           <scientific_name>Thellungiella halophila</scientific_name>
3426                                           <common_name>Salt cress</common_name>
3427                                           <rank>species</rank>
3428                                           <uri>http://mplant.oxfordjournals.org/content/2/1/3/F1.large.jpg</uri>
3429                                         </taxonomy>
3430                                       </clade>
3431                                     </clade>
3432                                     <clade>
3433                                       <name>CARPA</name>
3434                                       <taxonomy>
3435                                         <id provider="uniprot">3649</id>
3436                                         <code>CARPA</code>
3437                                         <scientific_name>Carica papaya</scientific_name>
3438                                         <common_name>Papaya</common_name>
3439                                         <rank>species</rank>
3440                                         <uri>http://www.biopix.com/photos/jko-carica-papaya-00412.jpg</uri>
3441                                         <uri>http://www.texasriviera.com/greenthumbs/papaya10.jpg</uri>
3442                                       </taxonomy>
3443                                     </clade>
3444                                   </clade>
3445                                   <clade>
3446                                     <taxonomy>
3447                                       <id provider="uniprot">2706</id>
3448                                       <scientific_name>Citrus</scientific_name>
3449                                       <rank>genus</rank>
3450                                     </taxonomy>
3451                                     <clade>
3452                                       <name>CITCLE</name>
3453                                       <taxonomy>
3454                                         <id provider="uniprot">85681</id>
3455                                         <scientific_name>Citrus clementina</scientific_name>
3456                                         <synonym>Citrus clementina hort. ex Tanaka</synonym>
3457                                         <rank>species</rank>
3458                                         <uri>http://palmen-bolschetz.de/images/citrus%20clementine.jpg</uri>
3459                                       </taxonomy>
3460                                     </clade>
3461                                     <clade>
3462                                       <name>CITSI</name>
3463                                       <taxonomy>
3464                                         <id provider="uniprot">2711</id>
3465                                         <code>CITSI</code>
3466                                         <scientific_name>Citrus sinensis</scientific_name>
3467                                         <common_name>Sweet orange</common_name>
3468                                         <synonym>Citrus x sinensis</synonym>
3469                                         <synonym>Citrus aurantium var. sinensis</synonym>
3470                                         <rank>species</rank>
3471                                         <uri>http://www.west-crete.com/flowers/photos/citrus_sinensis-1.jpg</uri>
3472                                       </taxonomy>
3473                                     </clade>
3474                                   </clade>
3475                                 </clade>
3476                                 <clade>
3477                                   <name>EUCGR</name>
3478                                   <taxonomy>
3479                                     <id provider="uniprot">71139</id>
3480                                     <code>EUCGR</code>
3481                                     <scientific_name>Eucalyptus grandis</scientific_name>
3482                                     <common_name>Flooded gum</common_name>
3483                                     <rank>species</rank>
3484                                     <uri>http://www.calflora.net/losangelesarboretum/images/eucalyptus_grandis.jpg</uri>
3485                                   </taxonomy>
3486                                 </clade>
3487                               </clade>
3488                             </clade>
3489                             <clade>
3490                               <name>VITVI</name>
3491                               <taxonomy>
3492                                 <id provider="eol">582304</id>
3493                                 <code>VITVI</code>
3494                                 <scientific_name>Vitis vinifera</scientific_name>
3495                                 <common_name>Grape</common_name>
3496                                 <rank>species</rank>
3497                               </taxonomy>
3498                             </clade>
3499                           </clade>
3500                           <clade>
3501                             <taxonomy>
3502                               <id provider="uniprot">91888</id>
3503                               <scientific_name>lamiids</scientific_name>
3504                             </taxonomy>
3505                             <clade>
3506                               <taxonomy>
3507                                 <id provider="uniprot">4070</id>
3508                                 <scientific_name>Solanaceae</scientific_name>
3509                                 <rank>family</rank>
3510                               </taxonomy>
3511                               <clade>
3512                                 <taxonomy>
3513                                   <id provider="uniprot">4107</id>
3514                                   <scientific_name>Solanum</scientific_name>
3515                                   <rank>genus</rank>
3516                                 </taxonomy>
3517                                 <clade>
3518                                   <taxonomy>
3519                                     <id provider="uniprot">49274</id>
3520                                     <scientific_name>Lycopersicon</scientific_name>
3521                                     <rank>subgenus</rank>
3522                                   </taxonomy>
3523                                   <clade>
3524                                     <taxonomy>
3525                                       <id provider="uniprot">4081</id>
3526                                       <code>SOLLC</code>
3527                                       <scientific_name>Solanum lycopersicum</scientific_name>
3528                                       <common_name>Tomato</common_name>
3529                                       <synonym>Lycopersicon esculentum</synonym>
3530                                       <rank>species</rank>
3531                                       <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0905/1214.jpeg</uri>
3532                                     </taxonomy>
3533                                   </clade>
3534                                   <clade>
3535                                     <taxonomy>
3536                                       <id provider="uniprot">4084</id>
3537                                       <code>SOLPI</code>
3538                                       <scientific_name>Solanum pimpinellifolium</scientific_name>
3539                                       <common_name>Currant tomato</common_name>
3540                                       <synonym>Lycopersicon pimpinellifolium</synonym>
3541                                       <rank>species</rank>
3542                                       <uri>http://upload.wikimedia.org/wikipedia/commons/b/b8/Currant_tomato.jpg</uri>
3543                                     </taxonomy>
3544                                   </clade>
3545                                 </clade>
3546                                 <clade>
3547                                   <taxonomy>
3548                                     <id provider="uniprot">4113</id>
3549                                     <code>SOLTU</code>
3550                                     <scientific_name>Solanum tuberosum</scientific_name>
3551                                     <common_name>Potato</common_name>
3552                                     <rank>species</rank>
3553                                     <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0508/0344.jpeg</uri>
3554                                   </taxonomy>
3555                                 </clade>
3556                               </clade>
3557                               <clade>
3558                                 <taxonomy>
3559                                   <id provider="uniprot">4097</id>
3560                                   <code>TOBAC</code>
3561                                   <scientific_name>Nicotiana tabacum</scientific_name>
3562                                   <common_name>Common tobacco</common_name>
3563                                   <rank>species</rank>
3564                                   <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0105/2073.jpeg</uri>
3565                                 </taxonomy>
3566                               </clade>
3567                             </clade>
3568                             <clade>
3569                               <name>MIMGU</name>
3570                               <taxonomy>
3571                                 <id provider="uniprot">4155</id>
3572                                 <code>MIMGU</code>
3573                                 <scientific_name>Mimulus guttatus</scientific_name>
3574                                 <common_name>Yellow monkey flower</common_name>
3575                                 <synonym>Yellow monkey flower</synonym>
3576                                 <rank>species</rank>
3577                               </taxonomy>
3578                             </clade>
3579                           </clade>
3580                         </clade>
3581                         <clade>
3582                           <name>AQUCA</name>
3583                           <taxonomy>
3584                             <id provider="uniprot">218851</id>
3585                             <code>AQUCA</code>
3586                             <scientific_name>Aquilegia caerulea</scientific_name>
3587                             <authority>E.James</authority>
3588                             <common_name>Rocky mountain columbine</common_name>
3589                             <synonym>Aquilegia coerulea</synonym>
3590                             <rank>species</rank>
3591                             <uri>http://content9.eol.org/content/2010/01/01/03/15137_large.jpg</uri>
3592                           </taxonomy>
3593                         </clade>
3594                       </clade>
3595                       <clade>
3596                         <taxonomy>
3597                           <id provider="uniprot">4479</id>
3598                           <scientific_name>Poaceae</scientific_name>
3599                           <common_name>grass family</common_name>
3600                           <synonym>Gramineae</synonym>
3601                           <rank>family</rank>
3602                         </taxonomy>
3603                         <clade>
3604                           <taxonomy>
3605                             <id provider="uniprot">147369</id>
3606                             <scientific_name>Panicoideae</scientific_name>
3607                             <authority>Link, 1827</authority>
3608                             <synonym>Centothecoideae</synonym>
3609                             <rank>subfamily</rank>
3610                           </taxonomy>
3611                           <clade>
3612                             <taxonomy>
3613                               <id provider="uniprot">147429</id>
3614                               <scientific_name>Andropogoneae</scientific_name>
3615                               <authority>Dumort., 1824</authority>
3616                               <rank>tribe</rank>
3617                             </taxonomy>
3618                             <clade>
3619                               <name>SORBI</name>
3620                               <taxonomy>
3621                                 <id provider="uniprot">4558</id>
3622                                 <code>SORBI</code>
3623                                 <scientific_name>Sorghum bicolor</scientific_name>
3624                                 <common_name>Sorghum</common_name>
3625                                 <synonym>Sorghum vulgare</synonym>
3626                                 <rank>species</rank>
3627                               </taxonomy>
3628                             </clade>
3629                             <clade>
3630                               <name>MAIZE</name>
3631                               <taxonomy>
3632                                 <id provider="uniprot">4577</id>
3633                                 <code>MAIZE</code>
3634                                 <scientific_name>Zea mays</scientific_name>
3635                                 <common_name>Maize</common_name>
3636                                 <rank>species</rank>
3637                               </taxonomy>
3638                             </clade>
3639                           </clade>
3640                           <clade>
3641                             <taxonomy>
3642                               <id provider="uniprot">147428</id>
3643                               <scientific_name>Paniceae</scientific_name>
3644                               <rank>tribe</rank>
3645                             </taxonomy>
3646                             <clade>
3647                               <name>PANVIR</name>
3648                               <taxonomy>
3649                                 <id provider="uniprot">38727</id>
3650                                 <scientific_name>Panicum virgatum</scientific_name>
3651                                 <common_name>switchgrass</common_name>
3652                                 <rank>species</rank>
3653                                 <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/2/29/PanicumVirgatum.jpg/220px-PanicumVirgatum.jpg</uri>
3654                               </taxonomy>
3655                             </clade>
3656                             <clade>
3657                               <name>SETIT</name>
3658                               <taxonomy>
3659                                 <id provider="uniprot">4555</id>
3660                                 <code>SETIT</code>
3661                                 <scientific_name>Setaria italica</scientific_name>
3662                                 <common_name>Foxtail millet</common_name>
3663                                 <synonym>Panicum italicum</synonym>
3664                                 <rank>species</rank>
3665                                 <uri>http://en.academic.ru/pictures/enwiki/83/Setaria_italica0.jpg</uri>
3666                               </taxonomy>
3667                             </clade>
3668                           </clade>
3669                         </clade>
3670                         <clade>
3671                           <taxonomy>
3672                             <id provider="uniprot">359160</id>
3673                             <scientific_name>BEP clade</scientific_name>
3674                           </taxonomy>
3675                           <clade>
3676                             <taxonomy>
3677                               <id provider="uniprot">4527</id>
3678                               <scientific_name>Oryza</scientific_name>
3679                               <rank>genus</rank>
3680                             </taxonomy>
3681                             <clade>
3682                               <name>ORYSA</name>
3683                               <taxonomy>
3684                                 <id provider="uniprot">4530</id>
3685                                 <code>ORYSA</code>
3686                                 <scientific_name>Oryza sativa</scientific_name>
3687                                 <common_name>Rice</common_name>
3688                                 <rank>species</rank>
3689                               </taxonomy>
3690                             </clade>
3691                             <clade>
3692                               <name>ORYSJ</name>
3693                               <taxonomy>
3694                                 <id provider="uniprot">39947</id>
3695                                 <code>ORYSJ</code>
3696                                 <scientific_name>Oryza sativa subsp. japonica</scientific_name>
3697                                 <common_name>Rice</common_name>
3698                               </taxonomy>
3699                             </clade>
3700                           </clade>
3701                           <clade>
3702                             <name>BRADI</name>
3703                             <taxonomy>
3704                               <id provider="uniprot">15368</id>
3705                               <code>BRADI</code>
3706                               <scientific_name>Brachypodium distachyon</scientific_name>
3707                               <common_name>Purple false brome</common_name>
3708                               <synonym>Trachynia distachya</synonym>
3709                               <rank>species</rank>
3710                               <uri>http://content5.eol.org/content/2011/01/15/20/16311_large.jpg</uri>
3711                             </taxonomy>
3712                           </clade>
3713                         </clade>
3714                       </clade>
3715                     </clade>
3716                     <clade>
3717                       <name>SELMO</name>
3718                       <taxonomy>
3719                         <id provider="uniprot">34167</id>
3720                         <code>SELMO</code>
3721                         <scientific_name>Selaginella mollis</scientific_name>
3722                         <common_name>Moss</common_name>
3723                         <rank>species</rank>
3724                       </taxonomy>
3725                     </clade>
3726                   </clade>
3727                   <clade>
3728                     <name>PHYPA</name>
3729                     <taxonomy>
3730                       <id provider="uniprot">145481</id>
3731                       <code>PHYPA</code>
3732                       <scientific_name>Physcomitrella patens subsp. patens</scientific_name>
3733                       <common_name>Moss</common_name>
3734                       <rank>subspecies</rank>
3735                     </taxonomy>
3736                   </clade>
3737                 </clade>
3738                 <clade>
3739                   <taxonomy>
3740                     <id provider="uniprot">3041</id>
3741                     <scientific_name>Chlorophyta</scientific_name>
3742                     <rank>phylum</rank>
3743                   </taxonomy>
3744                   <clade>
3745                     <taxonomy>
3746                       <id provider="uniprot">13792</id>
3747                       <scientific_name>Mamiellales</scientific_name>
3748                       <rank>order</rank>
3749                     </taxonomy>
3750                     <clade>
3751                       <taxonomy>
3752                         <id provider="uniprot">70447</id>
3753                         <scientific_name>Ostreococcus</scientific_name>
3754                         <rank>genus</rank>
3755                       </taxonomy>
3756                       <clade>
3757                         <name>OSTLU</name>
3758                         <taxonomy>
3759                           <id provider="uniprot">436017</id>
3760                           <code>OSTLU</code>
3761                           <scientific_name>Ostreococcus lucimarinus (strain CCE9901)</scientific_name>
3762                         </taxonomy>
3763                       </clade>
3764                       <clade>
3765                         <name>OSTRC</name>
3766                         <taxonomy>
3767                           <id provider="uniprot">385169</id>
3768                           <scientific_name>Ostreococcus sp. RCC809</scientific_name>
3769                           <rank>species</rank>
3770                         </taxonomy>
3771                       </clade>
3772                       <clade>
3773                         <name>OSTTA</name>
3774                         <taxonomy>
3775                           <id provider="uniprot">70448</id>
3776                           <code>OSTTA</code>
3777                           <scientific_name>Ostreococcus tauri</scientific_name>
3778                           <rank>species</rank>
3779                         </taxonomy>
3780                       </clade>
3781                     </clade>
3782                     <clade>
3783                       <taxonomy>
3784                         <id provider="uniprot">38832</id>
3785                         <scientific_name>Micromonas</scientific_name>
3786                         <rank>genus</rank>
3787                       </taxonomy>
3788                       <clade>
3789                         <name>MICPC</name>
3790                         <taxonomy>
3791                           <id provider="uniprot">564608</id>
3792                           <code>MICPC</code>
3793                           <scientific_name>Micromonas pusilla (strain CCMP1545)</scientific_name>
3794                           <common_name>Picoplanktonic green alga</common_name>
3795                         </taxonomy>
3796                       </clade>
3797                       <clade>
3798                         <name>MICSR</name>
3799                         <taxonomy>
3800                           <id provider="uniprot">296587</id>
3801                           <code>MICSR</code>
3802                           <scientific_name>Micromonas sp. (strain RCC299 / NOUM17)</scientific_name>
3803                           <common_name>Picoplanktonic green alga</common_name>
3804                           <synonym>Micromonas sp. RCC299</synonym>
3805                           <rank>species</rank>
3806                         </taxonomy>
3807                       </clade>
3808                     </clade>
3809                   </clade>
3810                   <clade>
3811                     <name>Trebouxiophyceae &amp; Chlorophyceae</name>
3812                     <clade>
3813                       <taxonomy>
3814                         <id provider="uniprot">75966</id>
3815                         <scientific_name>Trebouxiophyceae</scientific_name>
3816                         <rank>class</rank>
3817                       </taxonomy>
3818                       <clade>
3819                         <name>ASTSPC</name>
3820                         <taxonomy>
3821                           <id provider="uniprot">763042</id>
3822                           <scientific_name>Asterochloris sp. Cgr/DA1pho</scientific_name>
3823                           <rank>species</rank>
3824                           <uri>http://genome.jgi-psf.org/Astpho1/Figure_3.jpg</uri>
3825                         </taxonomy>
3826                       </clade>
3827                       <clade>
3828                         <name>CHLSP</name>
3829                         <taxonomy>
3830                           <id provider="uniprot">554065</id>
3831                           <scientific_name>Chlorella variabilis</scientific_name>
3832                           <synonym>Chlorella sp. NC64A</synonym>
3833                           <rank>species</rank>
3834                         </taxonomy>
3835                       </clade>
3836                       <clade>
3837                         <name>CHLVUL</name>
3838                         <taxonomy>
3839                           <id provider="uniprot">574566</id>
3840                           <scientific_name>Coccomyxa sp. C-169</scientific_name>
3841                           <synonym>Chlorella vulgaris C-169</synonym>
3842                           <rank>species</rank>
3843                         </taxonomy>
3844                       </clade>
3845                     </clade>
3846                     <clade>
3847                       <taxonomy>
3848                         <id provider="uniprot">3042</id>
3849                         <scientific_name>Chlamydomonadales</scientific_name>
3850                         <rank>order</rank>
3851                       </taxonomy>
3852                       <clade>
3853                         <name>CHLRE</name>
3854                         <taxonomy>
3855                           <id provider="uniprot">3055</id>
3856                           <code>CHLRE</code>
3857                           <scientific_name>Chlamydomonas reinhardtii</scientific_name>
3858                           <synonym>Chlamydomonas smithii</synonym>
3859                           <rank>species</rank>
3860                         </taxonomy>
3861                       </clade>
3862                       <clade>
3863                         <name>VOLCA</name>
3864                         <taxonomy>
3865                           <id provider="uniprot">3067</id>
3866                           <code>VOLCA</code>
3867                           <scientific_name>Volvox carteri</scientific_name>
3868                           <common_name>Green alga</common_name>
3869                           <rank>species</rank>
3870                         </taxonomy>
3871                       </clade>
3872                     </clade>
3873                   </clade>
3874                 </clade>
3875               </clade>
3876               <clade>
3877                 <name>CYAME</name>
3878                 <taxonomy>
3879                   <id provider="uniprot">45157</id>
3880                   <code>CYAME</code>
3881                   <scientific_name>Cyanidioschyzon merolae</scientific_name>
3882                   <common_name>Red alga</common_name>
3883                   <rank>species</rank>
3884                   <uri>http://merolae.biol.s.u-tokyo.ac.jp/</uri>
3885                 </taxonomy>
3886               </clade>
3887             </clade>
3888             <clade>
3889               <name>Chromalveolate</name>
3890               <reference doi="10.1073/pnas.0712248105">
3891               </reference>
3892               <clade>
3893                 <name>Heterokonta &amp; Alveolata</name>
3894                 <clade>
3895                   <taxonomy>
3896                     <id provider="uniprot">33630</id>
3897                     <scientific_name>Alveolata</scientific_name>
3898                   </taxonomy>
3899                   <clade>
3900                     <taxonomy>
3901                       <id provider="uniprot">5794</id>
3902                       <scientific_name>Apicomplexa</scientific_name>
3903                       <rank>phylum</rank>
3904                     </taxonomy>
3905                     <clade>
3906                       <taxonomy>
3907                         <id provider="uniprot">422676</id>
3908                         <scientific_name>Aconoidasida</scientific_name>
3909                         <rank>class</rank>
3910                       </taxonomy>
3911                       <clade>
3912                         <taxonomy>
3913                           <id provider="uniprot">5820</id>
3914                           <scientific_name>Plasmodium</scientific_name>
3915                           <rank>genus</rank>
3916                         </taxonomy>
3917                         <clade>
3918                           <name>PLACH</name>
3919                           <taxonomy>
3920                             <id provider="uniprot">5825</id>
3921                             <code>PLACH</code>
3922                             <scientific_name>Plasmodium chabaudi</scientific_name>
3923                             <rank>species</rank>
3924                           </taxonomy>
3925                         </clade>
3926                         <clade>
3927                           <name>PLAFA</name>
3928                           <taxonomy>
3929                             <id provider="uniprot">5833</id>
3930                             <code>PLAFA</code>
3931                             <scientific_name>Plasmodium falciparum</scientific_name>
3932                             <rank>species</rank>
3933                           </taxonomy>
3934                         </clade>
3935                         <clade>
3936                           <name>PLAYO</name>
3937                           <taxonomy>
3938                             <id provider="uniprot">73239</id>
3939                             <code>PLAYO</code>
3940                             <scientific_name>Plasmodium yoelii yoelii</scientific_name>
3941                             <rank>subspecies</rank>
3942                           </taxonomy>
3943                         </clade>
3944                       </clade>
3945                       <clade>
3946                         <name>Theileria</name>
3947                         <taxonomy>
3948                           <id provider="uniprot">5873</id>
3949                           <scientific_name>Theileria</scientific_name>
3950                           <rank>genus</rank>
3951                         </taxonomy>
3952                         <clade>
3953                           <name>THEAN</name>
3954                           <taxonomy>
3955                             <id provider="uniprot">5874</id>
3956                             <code>THEAN</code>
3957                             <scientific_name>Theileria annulata</scientific_name>
3958                             <rank>species</rank>
3959                           </taxonomy>
3960                         </clade>
3961                         <clade>
3962                           <name>THEPA</name>
3963                           <taxonomy>
3964                             <id provider="uniprot">5875</id>
3965                             <code>THEPA</code>
3966                             <scientific_name>Theileria parva</scientific_name>
3967                             <rank>species</rank>
3968                           </taxonomy>
3969                         </clade>
3970                       </clade>
3971                     </clade>
3972                     <clade>
3973                       <taxonomy>
3974                         <id provider="uniprot">423054</id>
3975                         <scientific_name>Eimeriorina</scientific_name>
3976                         <rank>suborder</rank>
3977                       </taxonomy>
3978                       <clade>
3979                         <taxonomy>
3980                           <id provider="uniprot">5806</id>
3981                           <scientific_name>Cryptosporidium</scientific_name>
3982                           <rank>genus</rank>
3983                         </taxonomy>
3984                         <clade>
3985                           <name>CRYHO</name>
3986                           <taxonomy>
3987                             <id provider="uniprot">237895</id>
3988                             <code>CRYHO</code>
3989                             <scientific_name>Cryptosporidium hominis</scientific_name>
3990                             <rank>species</rank>
3991                           </taxonomy>
3992                         </clade>
3993                         <clade>
3994                           <name>CRYPV</name>
3995                           <taxonomy>
3996                             <id provider="uniprot">5807</id>
3997                             <code>CRYPV</code>
3998                             <scientific_name>Cryptosporidium parvum</scientific_name>
3999                             <rank>species</rank>
4000                           </taxonomy>
4001                         </clade>
4002                       </clade>
4003                       <clade>
4004                         <name>Eimeria &amp; Toxoplasma</name>
4005                         <reference doi="10.1093/molbev/msn213">
4006                           <desc>The Apicomplexan Whole-Genome Phylogeny: An Analysis of Incongruence among Gene Trees</desc>
4007                         </reference>
4008                         <reference>
4009                         </reference>
4010                         <clade>
4011                           <taxonomy>
4012                             <id provider="uniprot">5802</id>
4013                             <code>EIMTE</code>
4014                             <scientific_name>Eimeria tenella</scientific_name>
4015                             <common_name>Coccidian parasite</common_name>
4016                             <rank>species</rank>
4017                             <uri>http://www.k-state.edu/parasitology/625tutorials/FIGtenella.jpg</uri>
4018                           </taxonomy>
4019                         </clade>
4020                         <clade>
4021                           <name>TOXGO</name>
4022                           <taxonomy>
4023                             <id provider="uniprot">5811</id>
4024                             <code>TOXGO</code>
4025                             <scientific_name>Toxoplasma gondii</scientific_name>
4026                             <rank>species</rank>
4027                           </taxonomy>
4028                         </clade>
4029                       </clade>
4030                     </clade>
4031                   </clade>
4032                   <clade>
4033                     <taxonomy>
4034                       <id provider="uniprot">6020</id>
4035                       <scientific_name>Oligohymenophorea</scientific_name>
4036                       <rank>class</rank>
4037                     </taxonomy>
4038                     <clade>
4039                       <name>PARTE</name>
4040                       <taxonomy>
4041                         <id provider="uniprot">5888</id>
4042                         <code>PARTE</code>
4043                         <scientific_name>Paramecium tetraurelia</scientific_name>
4044                         <rank>species</rank>
4045                       </taxonomy>
4046                     </clade>
4047                     <clade>
4048                       <name>TETTH</name>
4049                       <taxonomy>
4050                         <id provider="uniprot">5911</id>
4051                         <code>TETTH</code>
4052                         <scientific_name>Tetrahymena thermophila</scientific_name>
4053                         <rank>species</rank>
4054                       </taxonomy>
4055                     </clade>
4056                   </clade>
4057                 </clade>
4058                 <clade>
4059                   <name>Heterokonta</name>
4060                   <taxonomy>
4061                     <id provider="uniprot">33634</id>
4062                     <scientific_name>stramenopiles</scientific_name>
4063                     <synonym>Chromophyta</synonym>
4064                   </taxonomy>
4065                   <clade>
4066                     <name>Pelagophyceae_Bacillariophyta</name>
4067                     <clade>
4068                       <taxonomy>
4069                         <id provider="uniprot">2836</id>
4070                         <scientific_name>Bacillariophyta</scientific_name>
4071                         <common_name>diatoms</common_name>
4072                         <rank>phylum</rank>
4073                       </taxonomy>
4074                       <clade>
4075                         <taxonomy>
4076                           <id provider="uniprot">33850</id>
4077                           <scientific_name>Bacillariophycidae</scientific_name>
4078                         </taxonomy>
4079                         <clade>
4080                           <name>FRACY</name>
4081                           <taxonomy>
4082                             <id provider="eol">911694</id>
4083                             <code>FRACY</code>
4084                             <scientific_name>Fragilariopsis cylindrus</scientific_name>
4085                             <authority>Krieger</authority>
4086                             <synonym>Nitzschia cylindrus</synonym>
4087                             <rank>species</rank>
4088                           </taxonomy>
4089                         </clade>
4090                         <clade>
4091                           <name>PHATR</name>
4092                           <taxonomy>
4093                             <id provider="eol">912693</id>
4094                             <code>PHATR</code>
4095                             <scientific_name>Phaeodactylum tricornutum</scientific_name>
4096                             <authority>Bohlin</authority>
4097                             <rank>species</rank>
4098                           </taxonomy>
4099                         </clade>
4100                       </clade>
4101                       <clade>
4102                         <name>THAPS</name>
4103                         <taxonomy>
4104                           <id provider="eol">916868</id>
4105                           <code>THAPS</code>
4106                           <scientific_name>Thalassiosira pseudonana</scientific_name>
4107                           <authority>Hasle &amp; Heimdal</authority>
4108                           <common_name>Marine diatom</common_name>
4109                           <synonym>Cyclotella nana</synonym>
4110                           <rank>species</rank>
4111                         </taxonomy>
4112                       </clade>
4113                     </clade>
4114                     <clade>
4115                       <name>AURAN</name>
4116                       <taxonomy>
4117                         <id provider="eol">912461</id>
4118                         <code>AURAN</code>
4119                         <scientific_name>Aureococcus anophagefferens</scientific_name>
4120                         <authority>Hargraves &amp; Sieburth</authority>
4121                         <rank>species</rank>
4122                       </taxonomy>
4123                     </clade>
4124                   </clade>
4125                   <clade>
4126                     <taxonomy>
4127                       <id provider="uniprot">4783</id>
4128                       <scientific_name>Phytophthora</scientific_name>
4129                       <rank>genus</rank>
4130                     </taxonomy>
4131                     <clade>
4132                       <name>PHYIN</name>
4133                       <taxonomy>
4134                         <id provider="uniprot">4787</id>
4135                         <code>PHYIN</code>
4136                         <scientific_name>Phytophthora infestans</scientific_name>
4137                         <common_name>Potato late blight fungus</common_name>
4138                         <rank>species</rank>
4139                       </taxonomy>
4140                     </clade>
4141                     <clade>
4142                       <name>PHYRM</name>
4143                       <taxonomy>
4144                         <id provider="uniprot">164328</id>
4145                         <code>PHYRM</code>
4146                         <scientific_name>Phytophthora ramorum</scientific_name>
4147                         <common_name>Sudden oak death agent</common_name>
4148                         <rank>species</rank>
4149                       </taxonomy>
4150                     </clade>
4151                     <clade>
4152                       <name>PHYSO</name>
4153                       <taxonomy>
4154                         <id provider="uniprot">67593</id>
4155                         <scientific_name>Phytophthora sojae</scientific_name>
4156                         <rank>species</rank>
4157                       </taxonomy>
4158                     </clade>
4159                   </clade>
4160                 </clade>
4161               </clade>
4162               <clade>
4163                 <name>EMIHU</name>
4164                 <taxonomy>
4165                   <id provider="uniprot">2903</id>
4166                   <code>EMIHU</code>
4167                   <scientific_name>Emiliania huxleyi</scientific_name>
4168                   <rank>species</rank>
4169                 </taxonomy>
4170               </clade>
4171             </clade>
4172           </clade>
4173           <clade>
4174             <name>Excavata</name>
4175             <reference doi="10.1038/nature04546">
4176             </reference>
4177             <clade>
4178               <name>Kinetoplastida_Heterolobosea</name>
4179               <clade>
4180                 <taxonomy>
4181                   <id provider="uniprot">5654</id>
4182                   <scientific_name>Trypanosomatidae</scientific_name>
4183                   <rank>family</rank>
4184                 </taxonomy>
4185                 <clade>
4186                   <name>LEIMA</name>
4187                   <taxonomy>
4188                     <id provider="uniprot">5664</id>
4189                     <code>LEIMA</code>
4190                     <scientific_name>Leishmania major</scientific_name>
4191                     <rank>species</rank>
4192                   </taxonomy>
4193                 </clade>
4194                 <clade>
4195                   <name>TRYBB</name>
4196                   <taxonomy>
4197                     <id provider="uniprot">5702</id>
4198                     <code>TRYBB</code>
4199                     <scientific_name>Trypanosoma brucei brucei</scientific_name>
4200                     <rank>subspecies</rank>
4201                   </taxonomy>
4202                 </clade>
4203               </clade>
4204               <clade>
4205                 <name>NAEGR</name>
4206                 <taxonomy>
4207                   <id provider="uniprot">5762</id>
4208                   <code>NAEGR</code>
4209                   <scientific_name>Naegleria gruberi</scientific_name>
4210                   <common_name>Amoeba</common_name>
4211                   <rank>species</rank>
4212                 </taxonomy>
4213               </clade>
4214             </clade>
4215             <clade>
4216               <name>Metamonada</name>
4217               <clade>
4218                 <name>GIALA</name>
4219                 <taxonomy>
4220                   <id provider="uniprot">5741</id>
4221                   <code>GIALA</code>
4222                   <scientific_name>Giardia lamblia</scientific_name>
4223                   <synonym>Giardia intestinalis</synonym>
4224                   <synonym>Giardia lamblia</synonym>
4225                   <rank>species</rank>
4226                 </taxonomy>
4227               </clade>
4228               <clade>
4229                 <name>TRIVA</name>
4230                 <taxonomy>
4231                   <id provider="uniprot">5722</id>
4232                   <code>TRIVA</code>
4233                   <scientific_name>Trichomonas vaginalis</scientific_name>
4234                   <rank>species</rank>
4235                 </taxonomy>
4236               </clade>
4237             </clade>
4238           </clade>
4239         </clade>
4240       </clade>
4241       <clade>
4242         <name>Archaea</name>
4243         <taxonomy>
4244           <id provider="uniprot">2157</id>
4245           <scientific_name>Archaea</scientific_name>
4246           <rank>superkingdom</rank>
4247         </taxonomy>
4248         <clade>
4249           <name>a_62</name>
4250           <clade>
4251             <name>a_56</name>
4252             <clade>
4253               <taxonomy>
4254                 <id provider="uniprot">28890</id>
4255                 <scientific_name>Euryarchaeota</scientific_name>
4256                 <rank>phylum</rank>
4257               </taxonomy>
4258               <clade>
4259                 <name>a_44</name>
4260                 <clade>
4261                   <name>a_28</name>
4262                   <clade>
4263                     <name>a_26</name>
4264                     <clade>
4265                       <taxonomy>
4266                         <id provider="uniprot">224756</id>
4267                         <scientific_name>Methanomicrobia</scientific_name>
4268                         <rank>class</rank>
4269                       </taxonomy>
4270                       <clade>
4271                         <name>a_14</name>
4272                         <clade>
4273                           <name>a_12</name>
4274                           <clade>
4275                             <taxonomy>
4276                               <id provider="uniprot">2206</id>
4277                               <scientific_name>Methanosarcinaceae</scientific_name>
4278                               <rank>family</rank>
4279                             </taxonomy>
4280                             <clade>
4281                               <taxonomy>
4282                                 <id provider="uniprot">2207</id>
4283                                 <scientific_name>Methanosarcina</scientific_name>
4284                                 <rank>genus</rank>
4285                               </taxonomy>
4286                               <clade>
4287                                 <name>a_2</name>
4288                                 <clade>
4289                                   <name>METAC</name>
4290                                   <taxonomy>
4291                                     <id provider="uniprot">2214</id>
4292                                     <code>METAC</code>
4293                                     <scientific_name>Methanosarcina acetivorans</scientific_name>
4294                                     <rank>species</rank>
4295                                   </taxonomy>
4296                                 </clade>
4297                                 <clade>
4298                                   <name>METBF</name>
4299                                   <taxonomy>
4300                                     <id provider="uniprot">269797</id>
4301                                     <code>METBF</code>
4302                                     <scientific_name>Methanosarcina barkeri (strain Fusaro / DSM 804)</scientific_name>
4303                                   </taxonomy>
4304                                 </clade>
4305                               </clade>
4306                               <clade>
4307                                 <name>METMA</name>
4308                                 <taxonomy>
4309                                   <id provider="uniprot">2209</id>
4310                                   <code>METMA</code>
4311                                   <scientific_name>Methanosarcina mazei</scientific_name>
4312                                   <synonym>Methanosarcina frisia</synonym>
4313                                   <rank>species</rank>
4314                                 </taxonomy>
4315                               </clade>
4316                             </clade>
4317                             <clade>
4318                               <name>METBU</name>
4319                               <taxonomy>
4320                                 <id provider="uniprot">259564</id>
4321                                 <code>METBU</code>
4322                                 <scientific_name>Methanococcoides burtonii (strain DSM 6242)</scientific_name>
4323                               </taxonomy>
4324                             </clade>
4325                           </clade>
4326                           <clade>
4327                             <name>a_11</name>
4328                             <taxonomy>
4329                               <id provider="uniprot">2191</id>
4330                               <scientific_name>Methanomicrobiales</scientific_name>
4331                               <rank>order</rank>
4332                             </taxonomy>
4333                             <clade>
4334                               <name>a_9</name>
4335                               <clade>
4336                                 <name>METB6</name>
4337                                 <taxonomy>
4338                                   <id provider="uniprot">456442</id>
4339                                   <code>METB6</code>
4340                                   <scientific_name>Methanoregula boonei (strain 6A8)</scientific_name>
4341                                 </taxonomy>
4342                               </clade>
4343                               <clade>
4344                                 <name>METHU</name>
4345                                 <taxonomy>
4346                                   <id provider="uniprot">2203</id>
4347                                   <code>METHU</code>
4348                                   <scientific_name>Methanospirillum hungatei</scientific_name>
4349                                   <rank>species</rank>
4350                                 </taxonomy>
4351                               </clade>
4352                             </clade>
4353                             <clade>
4354                               <name>METMJ</name>
4355                               <taxonomy>
4356                                 <id provider="uniprot">368407</id>
4357                                 <code>METMJ</code>
4358                                 <scientific_name>Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1)</scientific_name>
4359                               </taxonomy>
4360                             </clade>
4361                           </clade>
4362                         </clade>
4363                         <clade>
4364                           <name>METLZ</name>
4365                           <taxonomy>
4366                             <id provider="uniprot">410358</id>
4367                             <code>METLZ</code>
4368                             <scientific_name>Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z)</scientific_name>
4369                           </taxonomy>
4370                         </clade>
4371                       </clade>
4372                       <clade>
4373                         <name>METTP</name>
4374                         <taxonomy>
4375                           <id provider="uniprot">349307</id>
4376                           <code>METTP</code>
4377                           <scientific_name>Methanosaeta thermophila (strain DSM 6194 / PT)</scientific_name>
4378                           <synonym>Methanothrix thermophila (strain DSM 6194 / PT)</synonym>
4379                         </taxonomy>
4380                       </clade>
4381                     </clade>
4382                     <clade>
4383                       <name>a_25</name>
4384                       <taxonomy>
4385                         <id provider="uniprot">2236</id>
4386                         <scientific_name>Halobacteriaceae</scientific_name>
4387                         <rank>family</rank>
4388                       </taxonomy>
4389                       <clade>
4390                         <name>a_23</name>
4391                         <clade>
4392                           <name>a_19</name>
4393                           <clade>
4394                             <name>HALMA</name>
4395                             <taxonomy>
4396                               <id provider="uniprot">2238</id>
4397                               <code>HALMA</code>
4398                               <scientific_name>Haloarcula marismortui</scientific_name>
4399                               <synonym>Halobacterium marismortui</synonym>
4400                               <rank>species</rank>
4401                             </taxonomy>
4402                           </clade>
4403                           <clade>
4404                             <name>NATPH</name>
4405                             <taxonomy>
4406                               <id provider="uniprot">2257</id>
4407                               <code>NATPH</code>
4408                               <scientific_name>Natronomonas pharaonis</scientific_name>
4409                               <common_name>Natronobacterium pharaonis</common_name>
4410                               <rank>species</rank>
4411                             </taxonomy>
4412                           </clade>
4413                         </clade>
4414                         <clade>
4415                           <name>a_22</name>
4416                           <taxonomy>
4417                             <id provider="uniprot">2239</id>
4418                             <scientific_name>Halobacterium</scientific_name>
4419                             <rank>genus</rank>
4420                           </taxonomy>
4421                           <clade>
4422                             <name>HALS3</name>
4423                             <taxonomy>
4424                               <id provider="uniprot">478009</id>
4425                               <code>HALS3</code>
4426                               <scientific_name>Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1)</scientific_name>
4427                             </taxonomy>
4428                           </clade>
4429                           <clade>
4430                             <name>HALSP</name>
4431                             <taxonomy>
4432                               <id provider="uniprot">2243</id>
4433                               <code>HALSP</code>
4434                               <scientific_name>Halobacterium sp.</scientific_name>
4435                               <rank>species</rank>
4436                             </taxonomy>
4437                           </clade>
4438                         </clade>
4439                       </clade>
4440                       <clade>
4441                         <name>HALWD</name>
4442                         <taxonomy>
4443                           <id provider="uniprot">362976</id>
4444                           <code>HALWD</code>
4445                           <scientific_name>Haloquadratum walsbyi (strain DSM 16790)</scientific_name>
4446                         </taxonomy>
4447                       </clade>
4448                     </clade>
4449                   </clade>
4450                   <clade>
4451                     <name>ARCFU</name>
4452                     <taxonomy>
4453                       <id provider="uniprot">2234</id>
4454                       <code>ARCFU</code>
4455                       <scientific_name>Archaeoglobus fulgidus</scientific_name>
4456                       <rank>species</rank>
4457                     </taxonomy>
4458                   </clade>
4459                 </clade>
4460                 <clade>
4461                   <name>a_43</name>
4462                   <clade>
4463                     <name>a_41</name>
4464                     <clade>
4465                       <name>a_35</name>
4466                       <taxonomy>
4467                         <id provider="uniprot">2182</id>
4468                         <scientific_name>Methanococcales</scientific_name>
4469                         <rank>order</rank>
4470                       </taxonomy>
4471                       <clade>
4472                         <name>a_31</name>
4473                         <clade>
4474                           <name>METJA</name>
4475                           <taxonomy>
4476                             <id provider="uniprot">2190</id>
4477                             <code>METJA</code>
4478                             <scientific_name>Methanocaldococcus jannaschii</scientific_name>
4479                             <synonym>Methanococcus jannaschii</synonym>
4480                             <rank>species</rank>
4481                           </taxonomy>
4482                         </clade>
4483                         <clade>
4484                           <name>META3</name>
4485                           <taxonomy>
4486                             <id provider="uniprot">419665</id>
4487                             <code>META3</code>
4488                             <scientific_name>Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280)</scientific_name>
4489                           </taxonomy>
4490                         </clade>
4491                       </clade>
4492                       <clade>
4493                         <name>a_34</name>
4494                         <taxonomy>
4495                           <id provider="uniprot">2184</id>
4496                           <scientific_name>Methanococcus</scientific_name>
4497                           <rank>genus</rank>
4498                         </taxonomy>
4499                         <clade>
4500                           <name>METMP</name>
4501                           <taxonomy>
4502                             <id provider="uniprot">39152</id>
4503                             <code>METMP</code>
4504                             <scientific_name>Methanococcus maripaludis</scientific_name>
4505                             <synonym>Methanococcus deltae</synonym>
4506                             <rank>species</rank>
4507                           </taxonomy>
4508                         </clade>
4509                         <clade>
4510                           <name>METVS</name>
4511                           <taxonomy>
4512                             <id provider="uniprot">406327</id>
4513                             <code>METVS</code>
4514                             <scientific_name>Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224)</scientific_name>
4515                           </taxonomy>
4516                         </clade>
4517                       </clade>
4518                     </clade>
4519                     <clade>
4520                       <name>a_40</name>
4521                       <taxonomy>
4522                         <id provider="uniprot">2159</id>
4523                         <scientific_name>Methanobacteriaceae</scientific_name>
4524                         <rank>family</rank>
4525                       </taxonomy>
4526                       <clade>
4527                         <name>a_38</name>
4528                         <clade>
4529                           <name>METS3</name>
4530                           <taxonomy>
4531                             <id provider="uniprot">420247</id>
4532                             <code>METS3</code>
4533                             <scientific_name>Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861)</scientific_name>
4534                           </taxonomy>
4535                         </clade>
4536                         <clade>
4537                           <name>METST</name>
4538                           <taxonomy>
4539                             <id provider="uniprot">339860</id>
4540                             <code>METST</code>
4541                             <scientific_name>Methanosphaera stadtmanae (strain DSM 3091)</scientific_name>
4542                           </taxonomy>
4543                         </clade>
4544                       </clade>
4545                       <clade>
4546                         <name>METTH</name>
4547                         <taxonomy>
4548                           <id provider="uniprot">187420</id>
4549                           <code>METTH</code>
4550                           <scientific_name>Methanobacterium thermoautotrophicum</scientific_name>
4551                         </taxonomy>
4552                       </clade>
4553                     </clade>
4554                   </clade>
4555                   <clade>
4556                     <name>METKA</name>
4557                     <taxonomy>
4558                       <id provider="uniprot">2320</id>
4559                       <code>METKA</code>
4560                       <scientific_name>Methanopyrus kandleri</scientific_name>
4561                       <rank>species</rank>
4562                     </taxonomy>
4563                   </clade>
4564                 </clade>
4565               </clade>
4566               <clade>
4567                 <name>a_51</name>
4568                 <taxonomy>
4569                   <id provider="uniprot">2259</id>
4570                   <scientific_name>Thermococcaceae</scientific_name>
4571                   <rank>family</rank>
4572                 </taxonomy>
4573                 <clade>
4574                   <name>a_47</name>
4575                   <clade>
4576                     <name>PYRFU</name>
4577                     <taxonomy>
4578                       <id provider="uniprot">2261</id>
4579                       <code>PYRFU</code>
4580                       <scientific_name>Pyrococcus furiosus</scientific_name>
4581                       <rank>species</rank>
4582                     </taxonomy>
4583                   </clade>
4584                   <clade>
4585                     <taxonomy>
4586                       <id provider="uniprot">69014</id>
4587                       <code>PYRKO</code>
4588                       <scientific_name>Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1)</scientific_name>
4589                       <synonym>Thermococcus kodakaraensis (strain KOD1)</synonym>
4590                     </taxonomy>
4591                   </clade>
4592                 </clade>
4593                 <clade>
4594                   <name>a_50</name>
4595                   <taxonomy>
4596                     <id provider="uniprot">2260</id>
4597                     <scientific_name>Pyrococcus</scientific_name>
4598                     <rank>genus</rank>
4599                   </taxonomy>
4600                   <clade>
4601                     <name>PYRAB</name>
4602                     <taxonomy>
4603                       <id provider="uniprot">29292</id>
4604                       <code>PYRAB</code>
4605                       <scientific_name>Pyrococcus abyssi</scientific_name>
4606                       <rank>species</rank>
4607                     </taxonomy>
4608                   </clade>
4609                   <clade>
4610                     <name>PYRHO</name>
4611                     <taxonomy>
4612                       <id provider="uniprot">53953</id>
4613                       <code>PYRHO</code>
4614                       <scientific_name>Pyrococcus horikoshii</scientific_name>
4615                       <rank>species</rank>
4616                     </taxonomy>
4617                   </clade>
4618                 </clade>
4619               </clade>
4620             </clade>
4621             <clade>
4622               <name>a_55</name>
4623               <clade>
4624                 <name>NANEQ</name>
4625                 <taxonomy>
4626                   <id provider="uniprot">228908</id>
4627                   <code>NANEQ</code>
4628                   <scientific_name>Nanoarchaeum equitans (strain Kin4-M)</scientific_name>
4629                 </taxonomy>
4630               </clade>
4631               <clade>
4632                 <taxonomy>
4633                   <id provider="uniprot">436308</id>
4634                   <code>NITMS</code>
4635                   <scientific_name>Nitrosopumilus maritimus (strain SCM1)</scientific_name>
4636                 </taxonomy>
4637               </clade>
4638             </clade>
4639           </clade>
4640           <clade>
4641             <taxonomy>
4642               <id provider="uniprot">2301</id>
4643               <scientific_name>Thermoplasmatales</scientific_name>
4644               <rank>order</rank>
4645             </taxonomy>
4646             <clade>
4647               <name>a_59</name>
4648               <taxonomy>
4649                 <id provider="uniprot">2302</id>
4650                 <scientific_name>Thermoplasma</scientific_name>
4651                 <rank>genus</rank>
4652               </taxonomy>
4653               <clade>
4654                 <name>THEAC</name>
4655                 <taxonomy>
4656                   <id provider="uniprot">273075</id>
4657                   <code>THEAC</code>
4658                   <scientific_name>Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)</scientific_name>
4659                 </taxonomy>
4660               </clade>
4661               <clade>
4662                 <name>THEVO</name>
4663                 <taxonomy>
4664                   <id provider="uniprot">273116</id>
4665                   <code>THEVO</code>
4666                   <scientific_name>Thermoplasma volcanium (strain ATCC 51530 / DSM 4299 / IFO 15438 / JCM 9571 / GSS1)</scientific_name>
4667                 </taxonomy>
4668               </clade>
4669             </clade>
4670             <clade>
4671               <name>PICTO</name>
4672               <taxonomy>
4673                 <id provider="uniprot">263820</id>
4674                 <code>PICTO</code>
4675                 <scientific_name>Picrophilus torridus (strain ATCC 700027 / DSM 9790 / JCM 10055 / NBRC 100828)</scientific_name>
4676               </taxonomy>
4677             </clade>
4678           </clade>
4679         </clade>
4680         <clade>
4681           <name>a_93</name>
4682           <clade>
4683             <taxonomy>
4684               <id provider="uniprot">183924</id>
4685               <scientific_name>Thermoprotei</scientific_name>
4686               <rank>class</rank>
4687             </taxonomy>
4688             <clade>
4689               <name>a_83</name>
4690               <clade>
4691                 <name>a_81</name>
4692                 <clade>
4693                   <name>a_73</name>
4694                   <taxonomy>
4695                     <id provider="uniprot">2267</id>
4696                     <scientific_name>Thermoproteaceae</scientific_name>
4697                     <rank>family</rank>
4698                   </taxonomy>
4699                   <clade>
4700                     <name>a_71</name>
4701                     <clade>
4702                       <name>a_67</name>
4703                       <taxonomy>
4704                         <id provider="uniprot">2276</id>
4705                         <scientific_name>Pyrobaculum</scientific_name>
4706                         <rank>genus</rank>
4707                       </taxonomy>
4708                       <clade>
4709                         <name>a_65</name>
4710                         <clade>
4711                           <name>PYRAR</name>
4712                           <taxonomy>
4713                             <id provider="uniprot">340102</id>
4714                             <code>PYRAR</code>
4715                             <scientific_name>Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321)</scientific_name>
4716                           </taxonomy>
4717                         </clade>
4718                         <clade>
4719                           <name>PYRCJ</name>
4720                           <taxonomy>
4721                             <id provider="uniprot">410359</id>
4722                             <code>PYRCJ</code>
4723                             <scientific_name>Pyrobaculum calidifontis (strain JCM 11548 / VA1)</scientific_name>
4724                           </taxonomy>
4725                         </clade>
4726                       </clade>
4727                       <clade>
4728                         <name>PYRAE</name>
4729                         <taxonomy>
4730                           <id provider="uniprot">13773</id>
4731                           <code>PYRAE</code>
4732                           <scientific_name>Pyrobaculum aerophilum</scientific_name>
4733                           <rank>species</rank>
4734                         </taxonomy>
4735                       </clade>
4736                     </clade>
4737                     <clade>
4738                       <name>a_70</name>
4739                       <clade>
4740                         <name>PYRIL</name>
4741                         <taxonomy>
4742                           <id provider="uniprot">384616</id>
4743                           <code>PYRIL</code>
4744                           <scientific_name>Pyrobaculum islandicum (strain DSM 4184 / JCM 9189)</scientific_name>
4745                         </taxonomy>
4746                       </clade>
4747                       <clade>
4748                         <name>THENV</name>
4749                         <taxonomy>
4750                           <id provider="uniprot">444157</id>
4751                           <code>THENV</code>
4752                           <scientific_name>Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta)</scientific_name>
4753                         </taxonomy>
4754                       </clade>
4755                     </clade>
4756                   </clade>
4757                   <clade>
4758                     <taxonomy>
4759                       <id provider="uniprot">397948</id>
4760                       <code>CALMQ</code>
4761                       <scientific_name>Caldivirga maquilingensis (strain ATCC 700844 / DSMZ 13496 / JCM 10307 / IC-167)</scientific_name>
4762                     </taxonomy>
4763                   </clade>
4764                 </clade>
4765                 <clade>
4766                   <name>a_80</name>
4767                   <taxonomy>
4768                     <id provider="uniprot">118883</id>
4769                     <scientific_name>Sulfolobaceae</scientific_name>
4770                     <rank>family</rank>
4771                   </taxonomy>
4772                   <clade>
4773                     <name>a_78</name>
4774                     <taxonomy>
4775                       <id provider="uniprot">2284</id>
4776                       <scientific_name>Sulfolobus</scientific_name>
4777                       <rank>genus</rank>
4778                     </taxonomy>
4779                     <clade>
4780                       <name>a_76</name>
4781                       <clade>
4782                         <name>SULAC</name>
4783                         <taxonomy>
4784                           <id provider="uniprot">2285</id>
4785                           <code>SULAC</code>
4786                           <scientific_name>Sulfolobus acidocaldarius</scientific_name>
4787                           <rank>species</rank>
4788                         </taxonomy>
4789                       </clade>
4790                       <clade>
4791                         <name>SULTO</name>
4792                         <taxonomy>
4793                           <id provider="uniprot">273063</id>
4794                           <code>SULTO</code>
4795                           <scientific_name>Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)</scientific_name>
4796                         </taxonomy>
4797                       </clade>
4798                     </clade>
4799                     <clade>
4800                       <name>SULSO</name>
4801                       <taxonomy>
4802                         <id provider="uniprot">2287</id>
4803                         <code>SULSO</code>
4804                         <scientific_name>Sulfolobus solfataricus</scientific_name>
4805                         <rank>species</rank>
4806                       </taxonomy>
4807                     </clade>
4808                   </clade>
4809                   <clade>
4810                     <name>METS5</name>
4811                     <taxonomy>
4812                       <id provider="uniprot">399549</id>
4813                       <code>METS5</code>
4814                       <scientific_name>Metallosphaera sedula (strain ATCC 51363 / DSM 5348)</scientific_name>
4815                     </taxonomy>
4816                   </clade>
4817                 </clade>
4818               </clade>
4819               <clade>
4820                 <name>AERPE</name>
4821                 <taxonomy>
4822                   <id provider="uniprot">56636</id>
4823                   <code>AERPE</code>
4824                   <scientific_name>Aeropyrum pernix</scientific_name>
4825                   <rank>species</rank>
4826                 </taxonomy>
4827               </clade>
4828             </clade>
4829             <clade>
4830               <name>a_90</name>
4831               <clade>
4832                 <name>a_88</name>
4833                 <clade>
4834                   <name>a_86</name>
4835                   <clade>
4836                     <name>STAMF</name>
4837                     <taxonomy>
4838                       <id provider="uniprot">399550</id>
4839                       <code>STAMF</code>
4840                       <scientific_name>Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1)</scientific_name>
4841                     </taxonomy>
4842                   </clade>
4843                   <clade>
4844                     <name>THEPD</name>
4845                     <taxonomy>
4846                       <id provider="uniprot">368408</id>
4847                       <code>THEPD</code>
4848                       <scientific_name>Thermofilum pendens (strain Hrk 5)</scientific_name>
4849                     </taxonomy>
4850                   </clade>
4851                 </clade>
4852                 <clade>
4853                   <name>HYPBU</name>
4854                   <taxonomy>
4855                     <id provider="uniprot">415426</id>
4856                     <code>HYPBU</code>
4857                     <scientific_name>Hyperthermus butylicus (strain DSM 5456 / JCM 9403)</scientific_name>
4858                   </taxonomy>
4859                 </clade>
4860               </clade>
4861               <clade>
4862                 <name>IGNH4</name>
4863                 <taxonomy>
4864                   <id provider="uniprot">453591</id>
4865                   <code>IGNH4</code>
4866                   <scientific_name>Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125)</scientific_name>
4867                 </taxonomy>
4868               </clade>
4869             </clade>
4870           </clade>
4871           <clade>
4872             <taxonomy>
4873               <id provider="uniprot">374847</id>
4874               <code>KORCO</code>
4875               <scientific_name>Korarchaeum cryptofilum (strain OPF8)</scientific_name>
4876             </taxonomy>
4877           </clade>
4878         </clade>
4879       </clade>
4880     </clade>
4881     <clade>
4882       <taxonomy>
4883         <id provider="uniprot">2</id>
4884         <scientific_name>Bacteria</scientific_name>
4885         <rank>superkingdom</rank>
4886       </taxonomy>
4887       <clade>
4888         <name>b_278</name>
4889         <clade>
4890           <name>b_268</name>
4891           <clade>
4892             <name>b_226</name>
4893             <clade>
4894               <name>b_200</name>
4895               <clade>
4896                 <name>b_194</name>
4897                 <clade>
4898                   <name>b_104</name>
4899                   <clade>
4900                     <name>b_80</name>
4901                     <clade>
4902                       <taxonomy>
4903                         <id provider="uniprot">1224</id>
4904                         <scientific_name>Proteobacteria</scientific_name>
4905                         <rank>phylum</rank>
4906                       </taxonomy>
4907                       <clade>
4908                         <name>b_52</name>
4909                         <clade>
4910                           <name>b_44</name>
4911                           <clade>
4912                             <name>b_30</name>
4913                             <clade>
4914                               <name>b_24</name>
4915                               <taxonomy>
4916                                 <id provider="uniprot">1236</id>
4917                                 <scientific_name>Gammaproteobacteria</scientific_name>
4918                                 <rank>class</rank>
4919                               </taxonomy>
4920                               <clade>
4921                                 <name>b_16</name>
4922                                 <clade>
4923                                   <name>b_10</name>
4924                                   <taxonomy>
4925                                     <id provider="uniprot">543</id>
4926                                     <scientific_name>Enterobacteriaceae</scientific_name>
4927                                     <rank>family</rank>
4928                                   </taxonomy>
4929                                   <clade>
4930                                     <name>b_8</name>
4931                                     <clade>
4932                                       <name>b_6</name>
4933                                       <clade>
4934                                         <name>b_4</name>
4935                                         <clade>
4936                                           <name>b_2</name>
4937                                           <taxonomy>
4938                                             <id provider="uniprot">561</id>
4939                                             <scientific_name>Escherichia</scientific_name>
4940                                             <rank>genus</rank>
4941                                           </taxonomy>
4942                                           <clade>
4943                                             <name>ECOLI</name>
4944                                             <taxonomy>
4945                                               <id provider="uniprot">83333</id>
4946                                               <code>ECOLI</code>
4947                                               <scientific_name>Escherichia coli (strain K12)</scientific_name>
4948                                             </taxonomy>
4949                                           </clade>
4950                                           <clade>
4951                                             <name>ECO57</name>
4952                                             <taxonomy>
4953                                               <id provider="uniprot">83334</id>
4954                                               <code>ECO57</code>
4955                                               <scientific_name>Escherichia coli O157:H7</scientific_name>
4956                                             </taxonomy>
4957                                           </clade>
4958                                         </clade>
4959                                         <clade>
4960                                           <name>SHIFL</name>
4961                                           <taxonomy>
4962                                             <id provider="uniprot">623</id>
4963                                             <code>SHIFL</code>
4964                                             <scientific_name>Shigella flexneri</scientific_name>
4965                                             <rank>species</rank>
4966                                           </taxonomy>
4967                                         </clade>
4968                                       </clade>
4969                                       <clade>
4970                                         <name>SALTY</name>
4971                                         <taxonomy>
4972                                           <id provider="uniprot">90371</id>
4973                                           <code>SALTY</code>
4974                                           <scientific_name>Salmonella typhimurium</scientific_name>
4975                                         </taxonomy>
4976                                       </clade>
4977                                     </clade>
4978                                     <clade>
4979                                       <name>YERPE</name>
4980                                       <taxonomy>
4981                                         <id provider="uniprot">632</id>
4982                                         <code>YERPE</code>
4983                                         <scientific_name>Yersinia pestis</scientific_name>
4984                                         <rank>species</rank>
4985                                       </taxonomy>
4986                                     </clade>
4987                                   </clade>
4988                                   <clade>
4989                                     <name>PHOLU</name>
4990                                     <taxonomy>
4991                                       <id provider="uniprot">29488</id>
4992                                       <code>PHOLU</code>
4993                                       <scientific_name>Photorhabdus luminescens</scientific_name>
4994                                       <synonym>Xenorhabdus luminescens</synonym>
4995                                       <rank>species</rank>
4996                                     </taxonomy>
4997                                   </clade>
4998                                 </clade>
4999                                 <clade>
5000                                   <name>b_15</name>
5001                                   <clade>
5002                                     <name>b_13</name>
5003                                     <taxonomy>
5004                                       <id provider="uniprot">641</id>
5005                                       <scientific_name>Vibrionaceae</scientific_name>
5006                                       <rank>family</rank>
5007                                     </taxonomy>
5008                                     <clade>
5009                                       <name>PHOPR</name>
5010                                       <taxonomy>
5011                                         <id provider="uniprot">74109</id>
5012                                         <code>PHOPR</code>
5013                                         <scientific_name>Photobacterium profundum</scientific_name>
5014                                         <synonym>Photobacterium sp. (strain SS9)</synonym>
5015                                         <rank>species</rank>
5016                                       </taxonomy>
5017                                     </clade>
5018                                     <clade>
5019                                       <name>VIBCH</name>
5020                                       <taxonomy>
5021                                         <id provider="uniprot">666</id>
5022                                         <code>VIBCH</code>
5023                                         <scientific_name>Vibrio cholerae</scientific_name>
5024                                         <rank>species</rank>
5025                                       </taxonomy>
5026                                     </clade>
5027                                   </clade>
5028                                   <clade>
5029                                     <name>SHEDO</name>
5030                                     <taxonomy>
5031                                       <id provider="uniprot">318161</id>
5032                                       <code>SHEDO</code>
5033                                       <scientific_name>Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013)</scientific_name>
5034                                     </taxonomy>
5035                                   </clade>
5036                                 </clade>
5037                               </clade>
5038                               <clade>
5039                                 <name>b_23</name>
5040                                 <clade>
5041                                   <name>b_21</name>
5042                                   <taxonomy>
5043                                     <id provider="uniprot">286</id>
5044                                     <scientific_name>Pseudomonas</scientific_name>
5045                                     <rank>genus</rank>
5046                                   </taxonomy>
5047                                   <clade>
5048                                     <name>b_19</name>
5049                                     <clade>
5050                                       <name>PSEF5</name>
5051                                       <taxonomy>
5052                                         <id provider="uniprot">220664</id>
5053                                         <code>PSEF5</code>
5054                                         <scientific_name>Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477)</scientific_name>
5055                                       </taxonomy>
5056                                     </clade>
5057                                     <clade>
5058                                       <name>PSEPF</name>
5059                                       <taxonomy>
5060                                         <id provider="uniprot">205922</id>
5061                                         <code>PSEPF</code>
5062                                         <scientific_name>Pseudomonas fluorescens (strain Pf0-1)</scientific_name>
5063                                       </taxonomy>
5064                                     </clade>
5065                                   </clade>
5066                                   <clade>
5067                                     <name>PSEAE</name>
5068                                     <taxonomy>
5069                                       <id provider="uniprot">287</id>
5070                                       <code>PSEAE</code>
5071                                       <scientific_name>Pseudomonas aeruginosa</scientific_name>
5072                                       <rank>species</rank>
5073                                     </taxonomy>
5074                                   </clade>
5075                                 </clade>
5076                                 <clade>
5077                                   <name>CHRSD</name>
5078                                   <taxonomy>
5079                                     <id provider="uniprot">290398</id>
5080                                     <code>CHRSD</code>
5081                                     <scientific_name>Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768)</scientific_name>
5082                                   </taxonomy>
5083                                 </clade>
5084                               </clade>
5085                             </clade>
5086                             <clade>
5087                               <name>b_29</name>
5088                               <taxonomy>
5089                                 <id provider="uniprot">28216</id>
5090                                 <scientific_name>Betaproteobacteria</scientific_name>
5091                                 <rank>class</rank>
5092                               </taxonomy>
5093                               <clade>
5094                                 <name>DECAR</name>
5095                                 <taxonomy>
5096                                   <id provider="uniprot">159087</id>
5097                                   <code>DECAR</code>
5098                                   <scientific_name>Dechloromonas aromatica (strain RCB)</scientific_name>
5099                                 </taxonomy>
5100                               </clade>
5101                               <clade>
5102                                 <name>RALME</name>
5103                                 <taxonomy>
5104                                   <id provider="uniprot">266264</id>
5105                                   <code>RALME</code>
5106                                   <scientific_name>Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839)</scientific_name>
5107                                 </taxonomy>
5108                               </clade>
5109                             </clade>
5110                           </clade>
5111                           <clade>
5112                             <name>b_43</name>
5113                             <clade>
5114                               <name>b_41</name>
5115                               <clade>
5116                                 <name>b_35</name>
5117                                 <taxonomy>
5118                                   <id provider="uniprot">28216</id>
5119                                   <scientific_name>Betaproteobacteria</scientific_name>
5120                                   <rank>class</rank>
5121                                 </taxonomy>
5122                                 <clade>
5123                                   <name>b_33</name>
5124                                   <taxonomy>
5125                                     <id provider="uniprot">206379</id>
5126                                     <scientific_name>Nitrosomonadaceae</scientific_name>
5127                                     <rank>family</rank>
5128                                   </taxonomy>
5129                                   <clade>
5130                                     <name>NITEU</name>
5131                                     <taxonomy>
5132                                       <id provider="uniprot">915</id>
5133                                       <code>NITEU</code>
5134                                       <scientific_name>Nitrosomonas europaea</scientific_name>
5135                                       <rank>species</rank>
5136                                     </taxonomy>
5137                                   </clade>
5138                                   <clade>
5139                                     <name>NITMU</name>
5140                                     <taxonomy>
5141                                       <id provider="uniprot">323848</id>
5142                                       <code>NITMU</code>
5143                                       <scientific_name>Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849)</scientific_name>
5144                                     </taxonomy>
5145                                   </clade>
5146                                 </clade>
5147                                 <clade>
5148                                   <name>THIDE</name>
5149                                   <taxonomy>
5150                                     <id provider="uniprot">36861</id>
5151                                     <code>THIDE</code>
5152                                     <scientific_name>Thiobacillus denitrificans</scientific_name>
5153                                     <rank>species</rank>
5154                                   </taxonomy>
5155                                 </clade>
5156                               </clade>
5157                               <clade>
5158                                 <name>b_40</name>
5159                                 <taxonomy>
5160                                   <id provider="uniprot">135613</id>
5161                                   <scientific_name>Chromatiales</scientific_name>
5162                                   <rank>order</rank>
5163                                 </taxonomy>
5164                                 <clade>
5165                                   <name>b_38</name>
5166                                   <taxonomy>
5167                                     <id provider="uniprot">72276</id>
5168                                     <scientific_name>Ectothiorhodospiraceae</scientific_name>
5169                                     <common_name>purple sulfur bacteria</common_name>
5170                                     <rank>family</rank>
5171                                   </taxonomy>
5172                                   <clade>
5173                                     <name>ALHEH</name>
5174                                     <taxonomy>
5175                                       <id provider="uniprot">187272</id>
5176                                       <code>ALHEH</code>
5177                                       <scientific_name>Alkalilimnicola ehrlichei (strain MLHE-1)</scientific_name>
5178                                     </taxonomy>
5179                                   </clade>
5180                                   <clade>
5181                                     <name>HALHL</name>
5182                                     <taxonomy>
5183                                       <id provider="uniprot">349124</id>
5184                                       <code>HALHL</code>
5185                                       <scientific_name>Halorhodospira halophila (strain DSM 244 / SL1)</scientific_name>
5186                                       <synonym>Ectothiorhodospira halophila (strain DSM 244 / SL1)</synonym>
5187                                     </taxonomy>
5188                                   </clade>
5189                                 </clade>
5190                                 <clade>
5191                                   <name>NITOC</name>
5192                                   <taxonomy>
5193                                     <id provider="uniprot">323261</id>
5194                                     <code>NITOC</code>
5195                                     <scientific_name>Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848)</scientific_name>
5196                                   </taxonomy>
5197                                 </clade>
5198                               </clade>
5199                             </clade>
5200                             <clade>
5201                               <name>THICR</name>
5202                               <taxonomy>
5203                                 <id provider="uniprot">317025</id>
5204                                 <code>THICR</code>
5205                                 <scientific_name>Thiomicrospira crunogena (strain XCL-2)</scientific_name>
5206                               </taxonomy>
5207                             </clade>
5208                           </clade>
5209                         </clade>
5210                         <clade>
5211                           <name>b_51</name>
5212                           <taxonomy>
5213                             <id provider="uniprot">1236</id>
5214                             <scientific_name>Gammaproteobacteria</scientific_name>
5215                             <rank>class</rank>
5216                           </taxonomy>
5217                           <clade>
5218                             <name>b_47</name>
5219                             <clade>
5220                               <name>IDILO</name>
5221                               <taxonomy>
5222                                 <id provider="uniprot">135577</id>
5223                                 <code>IDILO</code>
5224                                 <scientific_name>Idiomarina loihiensis</scientific_name>
5225                                 <rank>species</rank>
5226                               </taxonomy>
5227                             </clade>
5228                             <clade>
5229                               <name>LEGPN</name>
5230                               <taxonomy>
5231                                 <id provider="uniprot">446</id>
5232                                 <code>LEGPN</code>
5233                                 <scientific_name>Legionella pneumophila</scientific_name>
5234                                 <rank>species</rank>
5235                               </taxonomy>
5236                             </clade>
5237                           </clade>
5238                           <clade>
5239                             <name>b_50</name>
5240                             <taxonomy>
5241                               <id provider="uniprot">32033</id>
5242                               <scientific_name>Xanthomonadaceae</scientific_name>
5243                               <rank>family</rank>
5244                             </taxonomy>
5245                             <clade>
5246                               <name>XANAC</name>
5247                               <taxonomy>
5248                                 <id provider="uniprot">92829</id>
5249                                 <code>XANAC</code>
5250                                 <scientific_name>Xanthomonas axonopodis pv. citri</scientific_name>
5251                                 <common_name>Citrus canker</common_name>
5252                               </taxonomy>
5253                             </clade>
5254                             <clade>
5255                               <name>XYLFT</name>
5256                               <taxonomy>
5257                                 <id provider="uniprot">183190</id>
5258                                 <code>XYLFT</code>
5259                                 <scientific_name>Xylella fastidiosa (strain Temecula1 / ATCC 700964)</scientific_name>
5260                               </taxonomy>
5261                             </clade>
5262                           </clade>
5263                         </clade>
5264                       </clade>
5265                       <clade>
5266                         <name>b_71</name>
5267                         <taxonomy>
5268                           <id provider="uniprot">28211</id>
5269                           <scientific_name>Alphaproteobacteria</scientific_name>
5270                           <rank>class</rank>
5271                         </taxonomy>
5272                         <clade>
5273                           <name>b_67</name>
5274                           <clade>
5275                             <name>b_65</name>
5276                             <clade>
5277                               <name>b_61</name>
5278                               <taxonomy>
5279                                 <id provider="uniprot">356</id>
5280                                 <scientific_name>Rhizobiales</scientific_name>
5281                                 <rank>order</rank>
5282                               </taxonomy>
5283                               <clade>
5284                                 <name>b_57</name>
5285                                 <taxonomy>
5286                                   <id provider="uniprot">227290</id>
5287                                   <scientific_name>Rhizobium/Agrobacterium group</scientific_name>
5288                                 </taxonomy>
5289                                 <clade>
5290                                   <name>AGRT5</name>
5291                                   <taxonomy>
5292                                     <id provider="uniprot">176299</id>
5293                                     <code>AGRT5</code>
5294                                     <scientific_name>Agrobacterium tumefaciens (strain C58 / ATCC 33970)</scientific_name>
5295                                   </taxonomy>
5296                                 </clade>
5297                                 <clade>
5298                                   <name>RHIEC</name>
5299                                   <taxonomy>
5300                                     <id provider="uniprot">347834</id>
5301                                     <code>RHIEC</code>
5302                                     <scientific_name>Rhizobium etli (strain CFN 42 / ATCC 51251)</scientific_name>
5303                                   </taxonomy>
5304                                 </clade>
5305                               </clade>
5306                               <clade>
5307                                 <name>b_60</name>
5308                                 <taxonomy>
5309                                   <id provider="uniprot">41294</id>
5310                                   <scientific_name>Bradyrhizobiaceae</scientific_name>
5311                                   <rank>family</rank>
5312                                 </taxonomy>
5313                                 <clade>
5314                                   <name>BRAJA</name>
5315                                   <taxonomy>
5316                                     <id provider="uniprot">375</id>
5317                                     <code>BRAJA</code>
5318                                     <scientific_name>Bradyrhizobium japonicum</scientific_name>
5319                                     <rank>species</rank>
5320                                   </taxonomy>
5321                                 </clade>
5322                                 <clade>
5323                                   <name>RHOPT</name>
5324                                   <taxonomy>
5325                                     <id provider="uniprot">395960</id>
5326                                     <code>RHOPT</code>
5327                                     <scientific_name>Rhodopseudomonas palustris (strain TIE-1)</scientific_name>
5328                                   </taxonomy>
5329                                 </clade>
5330                               </clade>
5331                             </clade>
5332                             <clade>
5333                               <name>b_64</name>
5334                               <taxonomy>
5335                                 <id provider="uniprot">31989</id>
5336                                 <scientific_name>Rhodobacteraceae</scientific_name>
5337                                 <rank>family</rank>
5338                               </taxonomy>
5339                               <clade>
5340                                 <name>RHOS1</name>
5341                                 <taxonomy>
5342                                   <id provider="uniprot">349101</id>
5343                                   <code>RHOS1</code>
5344                                   <scientific_name>Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9)</scientific_name>
5345                                 </taxonomy>
5346                               </clade>
5347                               <clade>
5348                                 <name>ROSDO</name>
5349                                 <taxonomy>
5350                                   <id provider="uniprot">375451</id>
5351                                   <code>ROSDO</code>
5352                                   <scientific_name>Roseobacter denitrificans (strain ATCC 33942 / OCh 114)</scientific_name>
5353                                   <common_name>Erythrobacter sp. (strain OCh 114)</common_name>
5354                                   <synonym>Roseobacter denitrificans</synonym>
5355                                 </taxonomy>
5356                               </clade>
5357                             </clade>
5358                           </clade>
5359                           <clade>
5360                             <name>CAUCR</name>
5361                             <taxonomy>
5362                               <id provider="uniprot">155892</id>
5363                               <code>CAUCR</code>
5364                               <scientific_name>Caulobacter crescentus</scientific_name>
5365                               <synonym>Caulobacter vibrioides</synonym>
5366                               <rank>species</rank>
5367                             </taxonomy>
5368                           </clade>
5369                         </clade>
5370                         <clade>
5371                           <name>b_70</name>
5372                           <taxonomy>
5373                             <id provider="uniprot">204441</id>
5374                             <scientific_name>Rhodospirillales</scientific_name>
5375                             <rank>order</rank>
5376                           </taxonomy>
5377                           <clade>
5378                             <name>ACICY</name>
5379                             <taxonomy>
5380                               <id provider="uniprot">524</id>
5381                               <code>ACICY</code>
5382                               <scientific_name>Acidiphilium cryptum</scientific_name>
5383                               <rank>species</rank>
5384                             </taxonomy>
5385                           </clade>
5386                           <clade>
5387                             <name>RHORU</name>
5388                             <taxonomy>
5389                               <id provider="uniprot">1085</id>
5390                               <code>RHORU</code>
5391                               <scientific_name>Rhodospirillum rubrum</scientific_name>
5392                               <rank>species</rank>
5393                             </taxonomy>
5394                           </clade>
5395                         </clade>
5396                       </clade>
5397                     </clade>
5398                     <clade>
5399                       <name>b_79</name>
5400                       <clade>
5401                         <name>b_77</name>
5402                         <taxonomy>
5403                           <id provider="uniprot">1224</id>
5404                           <scientific_name>Proteobacteria</scientific_name>
5405                           <rank>phylum</rank>
5406                         </taxonomy>
5407                         <clade>
5408                           <name>b_75</name>
5409                           <taxonomy>
5410                             <id provider="uniprot">712</id>
5411                             <scientific_name>Pasteurellaceae</scientific_name>
5412                             <rank>family</rank>
5413                           </taxonomy>
5414                           <clade>
5415                             <name>HAEIN</name>
5416                             <taxonomy>
5417                               <id provider="uniprot">727</id>
5418                               <code>HAEIN</code>
5419                               <scientific_name>Haemophilus influenzae</scientific_name>
5420                               <rank>species</rank>
5421                             </taxonomy>
5422                           </clade>
5423                           <clade>
5424                             <name>PASMU</name>
5425                             <taxonomy>
5426                               <id provider="uniprot">747</id>
5427                               <code>PASMU</code>
5428                               <scientific_name>Pasteurella multocida</scientific_name>
5429                               <rank>species</rank>
5430                             </taxonomy>
5431                           </clade>
5432                         </clade>
5433                         <clade>
5434                           <name>NEIME</name>
5435                           <taxonomy>
5436                             <id provider="uniprot">487</id>
5437                             <code>NEIME</code>
5438                             <scientific_name>Neisseria meningitidis</scientific_name>
5439                             <rank>species</rank>
5440                           </taxonomy>
5441                         </clade>
5442                       </clade>
5443                       <clade>
5444                         <name>ACIFE</name>
5445                         <taxonomy>
5446                           <id provider="uniprot">905</id>
5447                           <code>ACIFE</code>
5448                           <scientific_name>Acidaminococcus fermentans</scientific_name>
5449                           <rank>species</rank>
5450                         </taxonomy>
5451                       </clade>
5452                     </clade>
5453                   </clade>
5454                   <clade>
5455                     <name>b_103</name>
5456                     <clade>
5457                       <name>b_91</name>
5458                       <taxonomy>
5459                         <id provider="uniprot">28221</id>
5460                         <scientific_name>Deltaproteobacteria</scientific_name>
5461                         <rank>class</rank>
5462                       </taxonomy>
5463                       <clade>
5464                         <name>b_87</name>
5465                         <clade>
5466                           <name>b_83</name>
5467                           <clade>
5468                             <name>DESPS</name>
5469                             <taxonomy>
5470                               <id provider="uniprot">84980</id>
5471                               <code>DESPS</code>
5472                               <scientific_name>Desulfotalea psychrophila</scientific_name>
5473                               <rank>species</rank>
5474                             </taxonomy>
5475                           </clade>
5476                           <clade>
5477                             <name>DESDE</name>
5478                             <taxonomy>
5479                               <id provider="uniprot">876</id>
5480                               <code>DESDE</code>
5481                               <scientific_name>Desulfovibrio desulfuricans</scientific_name>
5482                               <rank>species</rank>
5483                             </taxonomy>
5484                           </clade>
5485                         </clade>
5486                         <clade>
5487                           <name>SYNAS</name>
5488                           <taxonomy>
5489                             <id provider="uniprot">56780</id>
5490                             <code>SYNAS</code>
5491                             <scientific_name>Syntrophus aciditrophicus (strain SB)</scientific_name>
5492                           </taxonomy>
5493                         </clade>
5494                       </clade>
5495                       <clade>
5496                         <name>b_90</name>
5497                         <taxonomy>
5498                           <id provider="uniprot">28231</id>
5499                           <scientific_name>Geobacter</scientific_name>
5500                           <rank>genus</rank>
5501                         </taxonomy>
5502                         <clade>
5503                           <name>GEOME</name>
5504                           <taxonomy>
5505                             <id provider="uniprot">28232</id>
5506                             <code>GEOME</code>
5507                             <scientific_name>Geobacter metallireducens</scientific_name>
5508                             <rank>species</rank>
5509                           </taxonomy>
5510                         </clade>
5511                         <clade>
5512                           <name>GEOSL</name>
5513                           <taxonomy>
5514                             <id provider="uniprot">35554</id>
5515                             <code>GEOSL</code>
5516                             <scientific_name>Geobacter sulfurreducens</scientific_name>
5517                             <rank>species</rank>
5518                           </taxonomy>
5519                         </clade>
5520                       </clade>
5521                     </clade>
5522                     <clade>
5523                       <name>b_102</name>
5524                       <clade>
5525                         <name>b_98</name>
5526                         <clade>
5527                           <name>b_94</name>
5528                           <taxonomy>
5529                             <id provider="uniprot">31</id>
5530                             <scientific_name>Myxococcaceae</scientific_name>
5531                             <rank>family</rank>
5532                           </taxonomy>
5533                           <clade>
5534                             <name>ANADE</name>
5535                             <taxonomy>
5536                               <id provider="uniprot">290397</id>
5537                               <code>ANADE</code>
5538                               <scientific_name>Anaeromyxobacter dehalogenans (strain 2CP-C)</scientific_name>
5539                             </taxonomy>
5540                           </clade>
5541                           <clade>
5542                             <name>MYXXA</name>
5543                             <taxonomy>
5544                               <id provider="uniprot">34</id>
5545                               <code>MYXXA</code>
5546                               <scientific_name>Myxococcus xanthus</scientific_name>
5547                               <rank>species</rank>
5548                             </taxonomy>
5549                           </clade>
5550                         </clade>
5551                         <clade>
5552                           <name>b_97</name>
5553                           <taxonomy>
5554                             <id provider="uniprot">57723</id>
5555                             <scientific_name>Acidobacteria</scientific_name>
5556                             <rank>phylum</rank>
5557                           </taxonomy>
5558                           <clade>
5559                             <name>ACIBL</name>
5560                             <taxonomy>
5561                               <id provider="uniprot">204669</id>
5562                               <code>ACIBL</code>
5563                               <scientific_name>Acidobacteria bacterium (strain Ellin345)</scientific_name>
5564                             </taxonomy>
5565                           </clade>
5566                           <clade>
5567                             <name>SOLUS</name>
5568                             <taxonomy>
5569                               <id provider="uniprot">332163</id>
5570                               <code>SOLUS</code>
5571                               <scientific_name>Solibacter usitatus</scientific_name>
5572                               <rank>species</rank>
5573                             </taxonomy>
5574                           </clade>
5575                         </clade>
5576                       </clade>
5577                       <clade>
5578                         <name>RHOBA</name>
5579                         <taxonomy>
5580                           <id provider="uniprot">265606</id>
5581                           <code>RHOBA</code>
5582                           <scientific_name>Rhodopirellula baltica</scientific_name>
5583                           <rank>species</rank>
5584                         </taxonomy>
5585                       </clade>
5586                     </clade>
5587                   </clade>
5588                 </clade>
5589                 <clade>
5590                   <name>b_193</name>
5591                   <clade>
5592                     <name>b_163</name>
5593                     <clade>
5594                       <name>b_133</name>
5595                       <clade>
5596                         <name>Chloroflexi &amp; Actinobacteria</name>
5597                         <clade>
5598                           <taxonomy>
5599                             <id provider="uniprot">200795</id>
5600                             <scientific_name>Chloroflexi</scientific_name>
5601                             <common_name>GNS bacteria</common_name>
5602                             <synonym>Thermomicrobia</synonym>
5603                             <rank>phylum</rank>
5604                           </taxonomy>
5605                           <clade>
5606                             <taxonomy>
5607                               <id provider="uniprot">32061</id>
5608                               <scientific_name>Chloroflexi (class)</scientific_name>
5609                               <synonym>Chloroflecales</synonym>
5610                               <synonym>Chloroflexus/Deinococcus group</synonym>
5611                               <rank>class</rank>
5612                             </taxonomy>
5613                             <clade>
5614                               <name>b_122</name>
5615                               <taxonomy>
5616                                 <id provider="uniprot">1106</id>
5617                                 <scientific_name>Chloroflexaceae</scientific_name>
5618                                 <common_name>filamentous anoxygenic phototrophic bacteria</common_name>
5619                                 <rank>family</rank>
5620                               </taxonomy>
5621                               <clade>
5622                                 <name>CHLAU</name>
5623                                 <taxonomy>
5624                                   <id provider="uniprot">1108</id>
5625                                   <code>CHLAU</code>
5626                                   <scientific_name>Chloroflexus aurantiacus</scientific_name>
5627                                   <rank>species</rank>
5628                                 </taxonomy>
5629                               </clade>
5630                               <clade>
5631                                 <taxonomy>
5632                                   <id provider="uniprot">383372</id>
5633                                   <code>ROSCS</code>
5634                                   <scientific_name>Roseiflexus castenholzii (strain DSM 13941 / HLO8)</scientific_name>
5635                                   <rank>species</rank>
5636                                 </taxonomy>
5637                               </clade>
5638                             </clade>
5639                             <clade>
5640                               <name>HERAU</name>
5641                               <taxonomy>
5642                                 <id provider="uniprot">65</id>
5643                                 <code>HERAU</code>
5644                                 <scientific_name>Herpetosiphon aurantiacus</scientific_name>
5645                                 <synonym>Herpetosiphon giganteus</synonym>
5646                                 <rank>species</rank>
5647                               </taxonomy>
5648                             </clade>
5649                           </clade>
5650                           <clade>
5651                             <taxonomy>
5652                               <id provider="uniprot">479434</id>
5653                               <code>SPHTD</code>
5654                               <scientific_name>Sphaerobacter thermophilus (strain DSM 20745 / S 6022)</scientific_name>
5655                               <rank>strain</rank>
5656                             </taxonomy>
5657                           </clade>
5658                         </clade>
5659                         <clade>
5660                           <taxonomy>
5661                             <id provider="uniprot">201174</id>
5662                             <scientific_name>Actinobacteria</scientific_name>
5663                             <rank>phylum</rank>
5664                           </taxonomy>
5665                           <clade>
5666                             <taxonomy>
5667                               <id provider="uniprot">2037</id>
5668                               <scientific_name>Actinomycetales</scientific_name>
5669                               <rank>order</rank>
5670                             </taxonomy>
5671                             <clade>
5672                               <name>b_115</name>
5673                               <clade>
5674                                 <name>KINRD</name>
5675                                 <taxonomy>
5676                                   <id provider="uniprot">266940</id>
5677                                   <code>KINRD</code>
5678                                   <scientific_name>Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216)</scientific_name>
5679                                 </taxonomy>
5680                               </clade>
5681                               <clade>
5682                                 <name>KOCRD</name>
5683                                 <taxonomy>
5684                                   <id provider="uniprot">378753</id>
5685                                   <code>KOCRD</code>
5686                                   <scientific_name>Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201)</scientific_name>
5687                                 </taxonomy>
5688                               </clade>
5689                               <clade>
5690                                 <name>STRCO</name>
5691                                 <taxonomy>
5692                                   <id provider="uniprot">1902</id>
5693                                   <code>STRCO</code>
5694                                   <scientific_name>Streptomyces coelicolor</scientific_name>
5695                                   <rank>species</rank>
5696                                 </taxonomy>
5697                               </clade>
5698                               <clade>
5699                                 <name>THEFY</name>
5700                                 <taxonomy>
5701                                   <id provider="uniprot">269800</id>
5702                                   <code>THEFY</code>
5703                                   <scientific_name>Thermobifida fusca (strain YX)</scientific_name>
5704                                 </taxonomy>
5705                               </clade>
5706                               <clade>
5707                                 <taxonomy>
5708                                   <id provider="uniprot">1032480</id>
5709                                   <code>MICPN</code>
5710                                   <scientific_name>Microlunatus phosphovorus (strain ATCC 700054 / DSM 10555 / JCM 9379 / NBRC 101784 / NCIMB 13414 / VKM Ac-1990 / NM-1)</scientific_name>
5711                                   <common_name>Microlunatus phosphovorus NM-1</common_name>
5712                                   <rank>strain</rank>
5713                                 </taxonomy>
5714                               </clade>
5715                             </clade>
5716                             <clade>
5717                               <taxonomy>
5718                                 <id provider="uniprot">85007</id>
5719                                 <scientific_name>Corynebacterineae</scientific_name>
5720                                 <rank>suborder</rank>
5721                               </taxonomy>
5722                               <clade>
5723                                 <taxonomy>
5724                                   <id provider="uniprot">1763</id>
5725                                   <scientific_name>Mycobacterium</scientific_name>
5726                                   <rank>genus</rank>
5727                                 </taxonomy>
5728                                 <clade>
5729                                   <name>MYCLE</name>
5730                                   <taxonomy>
5731                                     <id provider="uniprot">1769</id>
5732                                     <code>MYCLE</code>
5733                                     <scientific_name>Mycobacterium leprae</scientific_name>
5734                                     <rank>species</rank>
5735                                   </taxonomy>
5736                                 </clade>
5737                                 <clade>
5738                                   <name>MYCTU</name>
5739                                   <taxonomy>
5740                                     <id provider="uniprot">1773</id>
5741                                     <code>MYCTU</code>
5742                                     <scientific_name>Mycobacterium tuberculosis</scientific_name>
5743                                     <rank>species</rank>
5744                                   </taxonomy>
5745                                 </clade>
5746                               </clade>
5747                               <clade>
5748                                 <name>CORJK</name>
5749                                 <taxonomy>
5750                                   <id provider="uniprot">306537</id>
5751                                   <code>CORJK</code>
5752                                   <scientific_name>Corynebacterium jeikeium (strain K411)</scientific_name>
5753                                 </taxonomy>
5754                               </clade>
5755                               <clade>
5756                                 <taxonomy>
5757                                   <id provider="uniprot">632772</id>
5758                                   <code>RHOOB</code>
5759                                   <scientific_name>Rhodococcus opacus (strain B4)</scientific_name>
5760                                   <rank>strain</rank>
5761                                 </taxonomy>
5762                               </clade>
5763                             </clade>
5764                           </clade>
5765                           <clade>
5766                             <name>RUBXD</name>
5767                             <taxonomy>
5768                               <id provider="uniprot">266117</id>
5769                               <code>RUBXD</code>
5770                               <scientific_name>Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129)</scientific_name>
5771                             </taxonomy>
5772                           </clade>
5773                         </clade>
5774                       </clade>
5775                       <clade>
5776                         <name>b_132</name>
5777                         <taxonomy>
5778                           <id provider="uniprot">188787</id>
5779                           <scientific_name>Deinococci</scientific_name>
5780                           <rank>class</rank>
5781                         </taxonomy>
5782                         <clade>
5783                           <name>b_130</name>
5784                           <taxonomy>
5785                             <id provider="uniprot">1298</id>
5786                             <scientific_name>Deinococcus</scientific_name>
5787                             <rank>genus</rank>
5788                           </taxonomy>
5789                           <clade>
5790                             <name>DEIGD</name>
5791                             <taxonomy>
5792                               <id provider="uniprot">319795</id>
5793                               <code>DEIGD</code>
5794                               <scientific_name>Deinococcus geothermalis (strain DSM 11300)</scientific_name>
5795                             </taxonomy>
5796                           </clade>
5797                           <clade>
5798                             <name>DEIRA</name>
5799                             <taxonomy>
5800                               <id provider="uniprot">1299</id>
5801                               <code>DEIRA</code>
5802                               <scientific_name>Deinococcus radiodurans</scientific_name>
5803                               <rank>species</rank>
5804                             </taxonomy>
5805                           </clade>
5806                         </clade>
5807                         <clade>
5808                           <name>THETH</name>
5809                           <taxonomy>
5810                             <id provider="uniprot">274</id>
5811                             <code>THETH</code>
5812                             <scientific_name>Thermus thermophilus</scientific_name>
5813                             <rank>species</rank>
5814                           </taxonomy>
5815                         </clade>
5816                       </clade>
5817                     </clade>
5818                     <clade>
5819                       <name>b_162</name>
5820                       <taxonomy>
5821                         <id provider="uniprot">1117</id>
5822                         <scientific_name>Cyanobacteria</scientific_name>
5823                         <rank>phylum</rank>
5824                       </taxonomy>
5825                       <clade>
5826                         <name>b_154</name>
5827                         <clade>
5828                           <name>b_152</name>
5829                           <clade>
5830                             <name>b_146</name>
5831                             <clade>
5832                               <name>b_144</name>
5833                               <clade>
5834                                 <name>b_142</name>
5835                                 <clade>
5836                                   <name>b_138</name>
5837                                   <taxonomy>
5838                                     <id provider="uniprot">1162</id>
5839                                     <scientific_name>Nostocaceae</scientific_name>
5840                                     <rank>family</rank>
5841                                   </taxonomy>
5842                                   <clade>
5843                                     <name>b_136</name>
5844                                     <clade>
5845                                       <name>ANAVA</name>
5846                                       <taxonomy>
5847                                         <id provider="uniprot">1172</id>
5848                                         <code>ANAVA</code>
5849                                         <scientific_name>Anabaena variabilis</scientific_name>
5850                                         <rank>species</rank>
5851                                       </taxonomy>
5852                                     </clade>
5853                                     <clade>
5854                                       <name>NOSS7</name>
5855                                       <taxonomy>
5856                                         <id provider="uniprot">28072</id>
5857                                         <code>NOSS7</code>
5858                                         <scientific_name>Nostoc sp. (strain PCC 7524)</scientific_name>
5859                                         <rank>species</rank>
5860                                       </taxonomy>
5861                                     </clade>
5862                                   </clade>
5863                                   <clade>
5864                                     <name>NOSP7</name>
5865                                     <taxonomy>
5866                                       <id provider="uniprot">63737</id>
5867                                       <code>NOSP7</code>
5868                                       <scientific_name>Nostoc punctiforme (strain ATCC 29133 / PCC 73102)</scientific_name>
5869                                     </taxonomy>
5870                                   </clade>
5871                                 </clade>
5872                                 <clade>
5873                                   <name>ACAMR</name>
5874                                   <taxonomy>
5875                                     <id provider="uniprot">155978</id>
5876                                     <code>ACAMR</code>
5877                                     <scientific_name>Acaryochloris marina</scientific_name>
5878                                     <rank>species</rank>
5879                                   </taxonomy>
5880                                 </clade>
5881                               </clade>
5882                               <clade>
5883                                 <name>MICAN</name>
5884                                 <taxonomy>
5885                                   <id provider="uniprot">449447</id>
5886                                   <code>MICAN</code>
5887                                   <scientific_name>Microcystis aeruginosa (strain NIES-843)</scientific_name>
5888                                 </taxonomy>
5889                               </clade>
5890                             </clade>
5891                             <clade>
5892                               <name>TRIER</name>
5893                               <taxonomy>
5894                                 <id provider="uniprot">1206</id>
5895                                 <code>TRIER</code>
5896                                 <scientific_name>Trichodesmium erythraeum</scientific_name>
5897                                 <rank>species</rank>
5898                               </taxonomy>
5899                             </clade>
5900                           </clade>
5901                           <clade>
5902                             <name>b_149</name>
5903                             <taxonomy>
5904                               <id provider="uniprot">1118</id>
5905                               <scientific_name>Chroococcales</scientific_name>
5906                               <rank>order</rank>
5907                             </taxonomy>
5908                             <clade>
5909                               <name>SYNEL</name>
5910                               <taxonomy>
5911                                 <id provider="uniprot">32046</id>
5912                                 <code>SYNEL</code>
5913                                 <scientific_name>Synechococcus elongatus</scientific_name>
5914                                 <rank>species</rank>
5915                               </taxonomy>
5916                             </clade>
5917                             <clade>
5918                               <name>SYNY3</name>
5919                               <taxonomy>
5920                                 <id provider="uniprot">1148</id>
5921                                 <code>SYNY3</code>
5922                                 <scientific_name>Synechocystis sp. (strain PCC 6803)</scientific_name>
5923                                 <rank>species</rank>
5924                               </taxonomy>
5925                             </clade>
5926                           </clade>
5927                         </clade>
5928                         <clade>
5929                           <name>GLOVI</name>
5930                           <taxonomy>
5931                             <id provider="uniprot">33072</id>
5932                             <code>GLOVI</code>
5933                             <scientific_name>Gloeobacter violaceus</scientific_name>
5934                             <rank>species</rank>
5935                           </taxonomy>
5936                         </clade>
5937                       </clade>
5938                       <clade>
5939                         <name>b_161</name>
5940                         <clade>
5941                           <name>b_159</name>
5942                           <taxonomy>
5943                             <id provider="uniprot">1218</id>
5944                             <scientific_name>Prochlorococcus</scientific_name>
5945                             <rank>genus</rank>
5946                           </taxonomy>
5947                           <clade>
5948                             <name>b_157</name>
5949                             <clade>
5950                               <name>PROMA</name>
5951                               <taxonomy>
5952                                 <id provider="uniprot">1219</id>
5953                                 <code>PROMA</code>
5954                                 <scientific_name>Prochlorococcus marinus</scientific_name>
5955                                 <rank>species</rank>
5956                               </taxonomy>
5957                             </clade>
5958                             <clade>
5959                               <name>PROMP</name>
5960                               <taxonomy>
5961                                 <id provider="uniprot">59919</id>
5962                                 <code>PROMP</code>
5963                                 <scientific_name>Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4)</scientific_name>
5964                               </taxonomy>
5965                             </clade>
5966                           </clade>
5967                           <clade>
5968                             <name>PROMM</name>
5969                             <taxonomy>
5970                               <id provider="uniprot">74547</id>
5971                               <code>PROMM</code>
5972                               <scientific_name>Prochlorococcus marinus (strain MIT 9313)</scientific_name>
5973                             </taxonomy>
5974                           </clade>
5975                         </clade>
5976                         <clade>
5977                           <name>SYNS3</name>
5978                           <taxonomy>
5979                             <id provider="uniprot">64471</id>
5980                             <code>SYNS3</code>
5981                             <scientific_name>Synechococcus sp. (strain CC9311)</scientific_name>
5982                             <rank>species</rank>
5983                           </taxonomy>
5984                         </clade>
5985                       </clade>
5986                     </clade>
5987                   </clade>
5988                   <clade>
5989                     <name>b_192</name>
5990                     <clade>
5991                       <name>b_190</name>
5992                       <clade>
5993                         <name>b_178</name>
5994                         <clade>
5995                           <name>b_176</name>
5996                           <taxonomy>
5997                             <id provider="uniprot">191412</id>
5998                             <scientific_name>Chlorobiaceae</scientific_name>
5999                             <rank>family</rank>
6000                           </taxonomy>
6001                           <clade>
6002                             <name>b_170</name>
6003                             <clade>
6004                               <name>b_166</name>
6005                               <clade>
6006                                 <name>CHLPB</name>
6007                                 <taxonomy>
6008                                   <id provider="uniprot">331678</id>
6009                                   <code>CHLPB</code>
6010                                   <scientific_name>Chlorobium phaeobacteroides (strain BS1)</scientific_name>
6011                                 </taxonomy>
6012                               </clade>
6013                               <clade>
6014                                 <name>PROAE</name>
6015                                 <taxonomy>
6016                                   <id provider="uniprot">1102</id>
6017                                   <code>PROAE</code>
6018                                   <scientific_name>Prosthecochloris aestuarii</scientific_name>
6019                                   <rank>species</rank>
6020                                 </taxonomy>
6021                               </clade>
6022                             </clade>
6023                             <clade>
6024                               <name>b_169</name>
6025                               <taxonomy>
6026                                 <id provider="uniprot">274493</id>
6027                                 <scientific_name>Chlorobium/Pelodictyon group</scientific_name>
6028                               </taxonomy>
6029                               <clade>
6030                                 <name>PELLU</name>
6031                                 <taxonomy>
6032                                   <id provider="uniprot">1100</id>
6033                                   <code>PELLU</code>
6034                                   <scientific_name>Pelodictyon luteolum</scientific_name>
6035                                   <rank>species</rank>
6036                                 </taxonomy>
6037                               </clade>
6038                               <clade>
6039                                 <name>PROVI</name>
6040                                 <taxonomy>
6041                                   <id provider="uniprot">290318</id>
6042                                   <code>PROVI</code>
6043                                   <scientific_name>Prosthecochloris vibrioformis (strain DSM 265)</scientific_name>
6044                                   <common_name>Chlorobium vibrioforme subsp. thiosulfatophilum (strain DSM 265)</common_name>
6045                                   <synonym>Chlorobium phaeovibrioides (strain DSM 265)</synonym>
6046                                 </taxonomy>
6047                               </clade>
6048                             </clade>
6049                           </clade>
6050                           <clade>
6051                             <name>b_175</name>
6052                             <clade>
6053                               <name>b_173</name>
6054                               <taxonomy>
6055                                 <id provider="uniprot">256319</id>
6056                                 <scientific_name>Chlorobaculum</scientific_name>
6057                                 <rank>genus</rank>
6058                               </taxonomy>
6059                               <clade>
6060                                 <name>CHLP8</name>
6061                                 <taxonomy>
6062                                   <id provider="uniprot">517417</id>
6063                                   <code>CHLP8</code>
6064                                   <scientific_name>Chlorobaculum parvum (strain NCIB 8327)</scientific_name>
6065                                   <synonym>Chlorobium vibrioforme subsp. thiosulfatophilum (strain DSM 263 / NCIB 8327)</synonym>
6066                                 </taxonomy>
6067                               </clade>
6068                               <clade>
6069                                 <name>CHLTE</name>
6070                                 <taxonomy>
6071                                   <id provider="uniprot">1097</id>
6072                                   <code>CHLTE</code>
6073                                   <scientific_name>Chlorobium tepidum</scientific_name>
6074                                   <rank>species</rank>
6075                                 </taxonomy>
6076                               </clade>
6077                             </clade>
6078                             <clade>
6079                               <name>CHLCH</name>
6080                               <taxonomy>
6081                                 <id provider="uniprot">340177</id>
6082                                 <code>CHLCH</code>
6083                                 <scientific_name>Chlorobium chlorochromatii (strain CaD3)</scientific_name>
6084                               </taxonomy>
6085                             </clade>
6086                           </clade>
6087                         </clade>
6088                         <clade>
6089                           <name>CHLTA</name>
6090                           <taxonomy>
6091                             <id provider="uniprot">315277</id>
6092                             <code>CHLTA</code>
6093                             <scientific_name>Chlamydia trachomatis serovar A (strain HAR-13 / ATCC VR-571B)</scientific_name>
6094                           </taxonomy>
6095                         </clade>
6096                       </clade>
6097                       <clade>
6098                         <name>b_189</name>
6099                         <taxonomy>
6100                           <id provider="uniprot">976</id>
6101                           <scientific_name>Bacteroidetes</scientific_name>
6102                           <rank>phylum</rank>
6103                         </taxonomy>
6104                         <clade>
6105                           <name>b_183</name>
6106                           <clade>
6107                             <name>b_181</name>
6108                             <taxonomy>
6109                               <id provider="uniprot">49546</id>
6110                               <scientific_name>Flavobacteriaceae</scientific_name>
6111                               <rank>family</rank>
6112                             </taxonomy>
6113                             <clade>
6114                               <name>FLAJO</name>
6115                               <taxonomy>
6116                                 <id provider="uniprot">986</id>
6117                                 <code>FLAJO</code>
6118                                 <scientific_name>Flavobacterium johnsoniae</scientific_name>
6119                                 <synonym>Cytophaga johnsonae</synonym>
6120                                 <rank>species</rank>
6121                               </taxonomy>
6122                             </clade>
6123                             <clade>
6124                               <name>GRAFK</name>
6125                               <taxonomy>
6126                                 <id provider="uniprot">411154</id>
6127                                 <code>GRAFK</code>
6128                                 <scientific_name>Gramella forsetii (strain KT0803)</scientific_name>
6129                               </taxonomy>
6130                             </clade>
6131                           </clade>
6132                           <clade>
6133                             <name>CYTH3</name>
6134                             <taxonomy>
6135                               <id provider="uniprot">269798</id>
6136                               <code>CYTH3</code>
6137                               <scientific_name>Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469)</scientific_name>
6138                             </taxonomy>
6139                           </clade>
6140                         </clade>
6141                         <clade>
6142                           <name>b_188</name>
6143                           <taxonomy>
6144                             <id provider="uniprot">171549</id>
6145                             <scientific_name>Bacteroidales</scientific_name>
6146                             <rank>order</rank>
6147                           </taxonomy>
6148                           <clade>
6149                             <name>b_186</name>
6150                             <taxonomy>
6151                               <id provider="uniprot">816</id>
6152                               <scientific_name>Bacteroides</scientific_name>
6153                               <rank>genus</rank>
6154                             </taxonomy>
6155                             <clade>
6156                               <name>BACFR</name>
6157                               <taxonomy>
6158                                 <id provider="uniprot">817</id>
6159                                 <code>BACFR</code>
6160                                 <scientific_name>Bacteroides fragilis</scientific_name>
6161                                 <rank>species</rank>
6162                               </taxonomy>
6163                             </clade>
6164                             <clade>
6165                               <name>BACTN</name>
6166                               <taxonomy>
6167                                 <id provider="uniprot">818</id>
6168                                 <code>BACTN</code>
6169                                 <scientific_name>Bacteroides thetaiotaomicron</scientific_name>
6170                                 <rank>species</rank>
6171                               </taxonomy>
6172                             </clade>
6173                           </clade>
6174                           <clade>
6175                             <name>PORGI</name>
6176                             <taxonomy>
6177                               <id provider="uniprot">837</id>
6178                               <code>PORGI</code>
6179                               <scientific_name>Porphyromonas gingivalis</scientific_name>
6180                               <synonym>Bacteroides gingivalis</synonym>
6181                               <rank>species</rank>
6182                             </taxonomy>
6183                           </clade>
6184                         </clade>
6185                       </clade>
6186                     </clade>
6187                     <clade>
6188                       <name>SALRD</name>
6189                       <taxonomy>
6190                         <id provider="uniprot">309807</id>
6191                         <code>SALRD</code>
6192                         <scientific_name>Salinibacter ruber (strain DSM 13855 / M31)</scientific_name>
6193                       </taxonomy>
6194                     </clade>
6195                   </clade>
6196                 </clade>
6197               </clade>
6198               <clade>
6199                 <name>b_199</name>
6200                 <clade>
6201                   <name>b_197</name>
6202                   <taxonomy>
6203                     <scientific_name>Verrucomicrobia</scientific_name>
6204                   </taxonomy>
6205                   <clade>
6206                     <name>AKKM8</name>
6207                     <taxonomy>
6208                       <id provider="uniprot">349741</id>
6209                       <code>AKKM8</code>
6210                       <scientific_name>Akkermansia muciniphila (strain ATCC BAA-835)</scientific_name>
6211                     </taxonomy>
6212                   </clade>
6213                   <clade>
6214                     <name>METI4</name>
6215                     <taxonomy>
6216                       <id provider="uniprot">481448</id>
6217                       <code>METI4</code>
6218                       <scientific_name>Methylacidiphilum infernorum (isolate V4)</scientific_name>
6219                       <synonym>Methylokorus infernorum (strain V4)</synonym>
6220                     </taxonomy>
6221                   </clade>
6222                 </clade>
6223                 <clade>
6224                   <name>LEPIC</name>
6225                   <taxonomy>
6226                     <id provider="uniprot">44275</id>
6227                     <code>LEPIC</code>
6228                     <scientific_name>Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni</scientific_name>
6229                   </taxonomy>
6230                 </clade>
6231               </clade>
6232             </clade>
6233             <clade>
6234               <name>b_225</name>
6235               <clade>
6236                 <name>b_219</name>
6237                 <taxonomy>
6238                   <id provider="uniprot">1239</id>
6239                   <scientific_name>Firmicutes</scientific_name>
6240                   <rank>phylum</rank>
6241                 </taxonomy>
6242                 <clade>
6243                   <name>b_213</name>
6244                   <clade>
6245                     <taxonomy>
6246                       <id provider="uniprot">1385</id>
6247                       <scientific_name>Bacillales</scientific_name>
6248                       <rank>order</rank>
6249                     </taxonomy>
6250                     <clade>
6251                       <taxonomy>
6252                         <id provider="uniprot">186817</id>
6253                         <scientific_name>Bacillaceae</scientific_name>
6254                         <rank>family</rank>
6255                       </taxonomy>
6256                       <clade>
6257                         <taxonomy>
6258                           <id provider="uniprot">1386</id>
6259                           <scientific_name>Bacillus</scientific_name>
6260                           <rank>genus</rank>
6261                         </taxonomy>
6262                         <clade>
6263                           <taxonomy>
6264                             <id provider="uniprot">86661</id>
6265                             <scientific_name>Bacillus cereus group</scientific_name>
6266                           </taxonomy>
6267                           <clade>
6268                             <name>BACAN</name>
6269                             <taxonomy>
6270                               <id provider="uniprot">1392</id>
6271                               <code>BACAN</code>
6272                               <scientific_name>Bacillus anthracis</scientific_name>
6273                               <rank>species</rank>
6274                             </taxonomy>
6275                           </clade>
6276                           <clade>
6277                             <taxonomy>
6278                               <id provider="uniprot">572264</id>
6279                               <code>BACC3</code>
6280                               <scientific_name>Bacillus cereus (strain 03BB102)</scientific_name>
6281                               <rank>strain</rank>
6282                             </taxonomy>
6283                           </clade>
6284                         </clade>
6285                         <clade>
6286                           <taxonomy>
6287                             <id provider="uniprot">1423</id>
6288                             <code>BACSU</code>
6289                             <scientific_name>Bacillus subtilis</scientific_name>
6290                             <rank>species</rank>
6291                           </taxonomy>
6292                         </clade>
6293                       </clade>
6294                       <clade>
6295                         <name>b_206</name>
6296                         <clade>
6297                           <name>BACHD</name>
6298                           <taxonomy>
6299                             <id provider="uniprot">86665</id>
6300                             <code>BACHD</code>
6301                             <scientific_name>Bacillus halodurans</scientific_name>
6302                             <rank>species</rank>
6303                           </taxonomy>
6304                         </clade>
6305                         <clade>
6306                           <name>GEOKA</name>
6307                           <taxonomy>
6308                             <id provider="uniprot">1462</id>
6309                             <code>GEOKA</code>
6310                             <scientific_name>Geobacillus kaustophilus</scientific_name>
6311                             <rank>species</rank>
6312                           </taxonomy>
6313                         </clade>
6314                       </clade>
6315                     </clade>
6316                     <clade>
6317                       <name>b_210</name>
6318                       <clade>
6319                         <name>LISMO</name>
6320                         <taxonomy>
6321                           <id provider="uniprot">1639</id>
6322                           <code>LISMO</code>
6323                           <scientific_name>Listeria monocytogenes</scientific_name>
6324                           <rank>species</rank>
6325                         </taxonomy>
6326                       </clade>
6327                       <clade>
6328                         <name>STAAU</name>
6329                         <taxonomy>
6330                           <id provider="uniprot">1280</id>
6331                           <code>STAAU</code>
6332                           <scientific_name>Staphylococcus aureus</scientific_name>
6333                           <rank>species</rank>
6334                         </taxonomy>
6335                       </clade>
6336                     </clade>
6337                   </clade>
6338                   <clade>
6339                     <name>CLOP1</name>
6340                     <taxonomy>
6341                       <id provider="uniprot">195103</id>
6342                       <code>CLOP1</code>
6343                       <scientific_name>Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A)</scientific_name>
6344                     </taxonomy>
6345                   </clade>
6346                 </clade>
6347                 <clade>
6348                   <name>Clostridia</name>
6349                   <taxonomy>
6350                     <id provider="uniprot">186801</id>
6351                     <scientific_name>Clostridia</scientific_name>
6352                     <rank>class</rank>
6353                   </taxonomy>
6354                   <clade>
6355                     <name>b_218</name>
6356                     <clade>
6357                       <name>b_216</name>
6358                       <taxonomy>
6359                         <id provider="uniprot">186814</id>
6360                         <scientific_name>Thermoanaerobacteriaceae</scientific_name>
6361                         <rank>family</rank>
6362                       </taxonomy>
6363                       <clade>
6364                         <name>CARHZ</name>
6365                         <taxonomy>
6366                           <id provider="uniprot">246194</id>
6367                           <code>CARHZ</code>
6368                           <scientific_name>Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008)</scientific_name>
6369                         </taxonomy>
6370                       </clade>
6371                       <clade>
6372                         <name>THETN</name>
6373                         <taxonomy>
6374                           <id provider="uniprot">119072</id>
6375                           <code>THETN</code>
6376                           <scientific_name>Thermoanaerobacter tengcongensis</scientific_name>
6377                           <rank>species</rank>
6378                         </taxonomy>
6379                       </clade>
6380                     </clade>
6381                     <clade>
6382                       <name>DESHA</name>
6383                       <taxonomy>
6384                         <id provider="uniprot">49338</id>
6385                         <code>DESHA</code>
6386                         <scientific_name>Desulfitobacterium hafniense</scientific_name>
6387                         <synonym>Desulfitobacterium frappieri</synonym>
6388                         <rank>species</rank>
6389                       </taxonomy>
6390                     </clade>
6391                   </clade>
6392                   <clade>
6393                     <name>EUBR3</name>
6394                     <taxonomy>
6395                       <id provider="uniprot">515619</id>
6396                       <code>EUBR3</code>
6397                       <scientific_name>Eubacterium rectale (strain ATCC 33656 / VPI 0990)</scientific_name>
6398                     </taxonomy>
6399                   </clade>
6400                 </clade>
6401               </clade>
6402               <clade>
6403                 <name>b_224</name>
6404                 <taxonomy>
6405                   <id provider="uniprot">188709</id>
6406                   <scientific_name>Thermotogaceae</scientific_name>
6407                   <rank>family</rank>
6408                 </taxonomy>
6409                 <clade>
6410                   <name>b_222</name>
6411                   <clade>
6412                     <name>FERNB</name>
6413                     <taxonomy>
6414                       <id provider="uniprot">381764</id>
6415                       <code>FERNB</code>
6416                       <scientific_name>Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1)</scientific_name>
6417                     </taxonomy>
6418                   </clade>
6419                   <clade>
6420                     <name>THELT</name>
6421                     <taxonomy>
6422                       <id provider="uniprot">416591</id>
6423                       <code>THELT</code>
6424                       <scientific_name>Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO)</scientific_name>
6425                     </taxonomy>
6426                   </clade>
6427                 </clade>
6428                 <clade>
6429                   <name>THEMA</name>
6430                   <taxonomy>
6431                     <id provider="uniprot">2336</id>
6432                     <code>THEMA</code>
6433                     <scientific_name>Thermotoga maritima</scientific_name>
6434                     <rank>species</rank>
6435                   </taxonomy>
6436                 </clade>
6437               </clade>
6438             </clade>
6439           </clade>
6440           <clade>
6441             <name>b_267</name>
6442             <clade>
6443               <name>b_263</name>
6444               <clade>
6445                 <name>b_251</name>
6446                 <clade>
6447                   <name>b_249</name>
6448                   <clade>
6449                     <name>b_245</name>
6450                     <clade>
6451                       <name>b_237</name>
6452                       <clade>
6453                         <name>b_233</name>
6454                         <taxonomy>
6455                           <id provider="uniprot">31969</id>
6456                           <scientific_name>Mollicutes</scientific_name>
6457                           <rank>class</rank>
6458                         </taxonomy>
6459                         <clade>
6460                           <name>b_231</name>
6461                           <clade>
6462                             <name>b_229</name>
6463                             <taxonomy>
6464                               <scientific_name>Mycoplasma</scientific_name>
6465                             </taxonomy>
6466                             <clade>
6467                               <name>MYCGE</name>
6468                               <taxonomy>
6469                                 <id provider="uniprot">2097</id>
6470                                 <code>MYCGE</code>
6471                                 <scientific_name>Mycoplasma genitalium</scientific_name>
6472                                 <rank>species</rank>
6473                               </taxonomy>
6474                             </clade>
6475                             <clade>
6476                               <name>MYCPN</name>
6477                               <taxonomy>
6478                                 <id provider="uniprot">2104</id>
6479                                 <code>MYCPN</code>
6480                                 <scientific_name>Mycoplasma pneumoniae</scientific_name>
6481                                 <rank>species</rank>
6482                               </taxonomy>
6483                             </clade>
6484                           </clade>
6485                           <clade>
6486                             <name>MESFL</name>
6487                             <taxonomy>
6488                               <id provider="uniprot">2151</id>
6489                               <code>MESFL</code>
6490                               <scientific_name>Mesoplasma florum</scientific_name>
6491                               <synonym>Acholeplasma florum</synonym>
6492                               <rank>species</rank>
6493                             </taxonomy>
6494                           </clade>
6495                         </clade>
6496                         <clade>
6497                           <name>UREPA</name>
6498                           <taxonomy>
6499                             <id provider="uniprot">134821</id>
6500                             <code>UREPA</code>
6501                             <scientific_name>Ureaplasma parvum</scientific_name>
6502                             <synonym>Ureaplasma urealyticum biotype 1</synonym>
6503                             <rank>species</rank>
6504                           </taxonomy>
6505                         </clade>
6506                       </clade>
6507                       <clade>
6508                         <name>b_236</name>
6509                         <taxonomy>
6510                           <id provider="uniprot">137</id>
6511                           <scientific_name>Spirochaetaceae</scientific_name>
6512                           <rank>family</rank>
6513                         </taxonomy>
6514                         <clade>
6515                           <name>BORBU</name>
6516                           <taxonomy>
6517                             <id provider="uniprot">139</id>
6518                             <code>BORBU</code>
6519                             <scientific_name>Borrelia burgdorferi</scientific_name>
6520                             <common_name>Lyme disease spirochete</common_name>
6521                             <rank>species</rank>
6522                           </taxonomy>
6523                         </clade>
6524                         <clade>
6525                           <name>TREPA</name>
6526                           <taxonomy>
6527                             <id provider="uniprot">160</id>
6528                             <code>TREPA</code>
6529                             <scientific_name>Treponema pallidum</scientific_name>
6530                             <rank>species</rank>
6531                           </taxonomy>
6532                         </clade>
6533                       </clade>
6534                     </clade>
6535                     <clade>
6536                       <name>b_244</name>
6537                       <clade>
6538                         <name>b_242</name>
6539                         <taxonomy>
6540                           <id provider="uniprot">1113537</id>
6541                           <scientific_name>Chlamydia/Chlamydophila group</scientific_name>
6542                         </taxonomy>
6543                         <clade>
6544                           <name>b_240</name>
6545                           <clade>
6546                             <name>CHLPN</name>
6547                             <taxonomy>
6548                               <id provider="uniprot">83558</id>
6549                               <code>CHLPN</code>
6550                               <scientific_name>Chlamydia pneumoniae</scientific_name>
6551                               <synonym>Chlamydophila pneumoniae</synonym>
6552                               <rank>species</rank>
6553                             </taxonomy>
6554                           </clade>
6555                           <clade>
6556                             <name>CHLFF</name>
6557                             <taxonomy>
6558                               <id provider="uniprot">264202</id>
6559                               <code>CHLFF</code>
6560                               <scientific_name>Chlamydophila felis (strain Fe/C-56)</scientific_name>
6561                             </taxonomy>
6562                           </clade>
6563                         </clade>
6564                         <clade>
6565                           <name>CHLMU</name>
6566                           <taxonomy>
6567                             <id provider="uniprot">83560</id>
6568                             <code>CHLMU</code>
6569                             <scientific_name>Chlamydia muridarum</scientific_name>
6570                             <rank>species</rank>
6571                           </taxonomy>
6572                         </clade>
6573                       </clade>
6574                       <clade>
6575                         <name>RICTY</name>
6576                         <taxonomy>
6577                           <id provider="uniprot">785</id>
6578                           <code>RICTY</code>
6579                           <scientific_name>Rickettsia typhi</scientific_name>
6580                           <rank>species</rank>
6581                         </taxonomy>
6582                       </clade>
6583                     </clade>
6584                   </clade>
6585                   <clade>
6586                     <taxonomy>
6587                       <id provider="uniprot">28211</id>
6588                       <scientific_name>Alphaproteobacteria</scientific_name>
6589                       <rank>class</rank>
6590                     </taxonomy>
6591                     <clade>
6592                       <taxonomy>
6593                         <id provider="uniprot">38323</id>
6594                         <code>BARHE</code>
6595                         <scientific_name>Bartonella henselae</scientific_name>
6596                         <synonym>Rochalimaea henselae</synonym>
6597                         <rank>species</rank>
6598                       </taxonomy>
6599                     </clade>
6600                     <clade>
6601                       <taxonomy>
6602                         <id provider="uniprot">198252</id>
6603                         <code>PELUB</code>
6604                         <scientific_name>Pelagibacter ubique</scientific_name>
6605                         <rank>species</rank>
6606                       </taxonomy>
6607                     </clade>
6608                     <clade>
6609                       <taxonomy>
6610                         <id provider="uniprot">780</id>
6611                         <scientific_name>Rickettsia</scientific_name>
6612                         <rank>genus</rank>
6613                       </taxonomy>
6614                       <clade>
6615                         <taxonomy>
6616                           <id provider="uniprot">452659</id>
6617                           <code>RICRO</code>
6618                           <scientific_name>Rickettsia rickettsii (strain Iowa)</scientific_name>
6619                           <rank>strain</rank>
6620                         </taxonomy>
6621                       </clade>
6622                       <clade>
6623                         <taxonomy>
6624                           <id provider="uniprot">391896</id>
6625                           <code>RICB8</code>
6626                           <scientific_name>Rickettsia bellii (strain OSU 85-389)</scientific_name>
6627                         </taxonomy>
6628                       </clade>
6629                     </clade>
6630                   </clade>
6631                 </clade>
6632                 <clade>
6633                   <name>FRATU</name>
6634                   <taxonomy>
6635                     <id provider="uniprot">263</id>
6636                     <code>FRATU</code>
6637                     <scientific_name>Francisella tularensis</scientific_name>
6638                     <rank>species</rank>
6639                   </taxonomy>
6640                 </clade>
6641               </clade>
6642               <clade>
6643                 <name>b_262</name>
6644                 <clade>
6645                   <name>b_260</name>
6646                   <clade>
6647                     <name>b_258</name>
6648                     <taxonomy>
6649                       <id provider="uniprot">186826</id>
6650                       <scientific_name>Lactobacillales</scientific_name>
6651                       <rank>order</rank>
6652                     </taxonomy>
6653                     <clade>
6654                       <name>b_256</name>
6655                       <taxonomy>
6656                         <id provider="uniprot">1300</id>
6657                         <scientific_name>Streptococcaceae</scientific_name>
6658                         <rank>family</rank>
6659                       </taxonomy>
6660                       <clade>
6661                         <name>b_254</name>
6662                         <taxonomy>
6663                           <id provider="uniprot">1301</id>
6664                           <scientific_name>Streptococcus</scientific_name>
6665                           <rank>genus</rank>
6666                         </taxonomy>
6667                         <clade>
6668                           <name>STRPN</name>
6669                           <taxonomy>
6670                             <id provider="uniprot">1313</id>
6671                             <code>STRPN</code>
6672                             <scientific_name>Streptococcus pneumoniae</scientific_name>
6673                             <rank>species</rank>
6674                           </taxonomy>
6675                         </clade>
6676                         <clade>
6677                           <name>STRPY</name>
6678                           <taxonomy>
6679                             <id provider="uniprot">1314</id>
6680                             <code>STRPY</code>
6681                             <scientific_name>Streptococcus pyogenes</scientific_name>
6682                             <rank>species</rank>
6683                           </taxonomy>
6684                         </clade>
6685                       </clade>
6686                       <clade>
6687                         <name>LACLA</name>
6688                         <taxonomy>
6689                           <id provider="uniprot">1360</id>
6690                           <code>LACLA</code>
6691                           <scientific_name>Lactococcus lactis subsp. lactis</scientific_name>
6692                           <synonym>Streptococcus lactis</synonym>
6693                           <rank>subspecies</rank>
6694                         </taxonomy>
6695                       </clade>
6696                     </clade>
6697                     <clade>
6698                       <name>LACAC</name>
6699                       <taxonomy>
6700                         <id provider="uniprot">1579</id>
6701                         <code>LACAC</code>
6702                         <scientific_name>Lactobacillus acidophilus</scientific_name>
6703                         <rank>species</rank>
6704                       </taxonomy>
6705                     </clade>
6706                   </clade>
6707                   <clade>
6708                     <name>BIFLO</name>
6709                     <taxonomy>
6710                       <id provider="uniprot">216816</id>
6711                       <code>BIFLO</code>
6712                       <scientific_name>Bifidobacterium longum</scientific_name>
6713                       <rank>species</rank>
6714                     </taxonomy>
6715                   </clade>
6716                 </clade>
6717                 <clade>
6718                   <name>FUSNU</name>
6719                   <taxonomy>
6720                     <id provider="uniprot">851</id>
6721                     <code>FUSNU</code>
6722                     <scientific_name>Fusobacterium nucleatum</scientific_name>
6723                     <rank>species</rank>
6724                   </taxonomy>
6725                 </clade>
6726               </clade>
6727             </clade>
6728             <clade>
6729               <name>b_266</name>
6730               <taxonomy>
6731                 <id provider="uniprot">61434</id>
6732                 <scientific_name>Dehalococcoides</scientific_name>
6733                 <rank>genus</rank>
6734               </taxonomy>
6735               <clade>
6736                 <name>DEHE1</name>
6737                 <taxonomy>
6738                   <id provider="uniprot">243164</id>
6739                   <code>DEHE1</code>
6740                   <scientific_name>Dehalococcoides ethenogenes (strain 195)</scientific_name>
6741                 </taxonomy>
6742               </clade>
6743               <clade>
6744                 <name>DEHSB</name>
6745                 <taxonomy>
6746                   <id provider="uniprot">216389</id>
6747                   <code>DEHSB</code>
6748                   <scientific_name>Dehalococcoides sp. (strain BAV1)</scientific_name>
6749                   <rank>species</rank>
6750                 </taxonomy>
6751               </clade>
6752             </clade>
6753           </clade>
6754         </clade>
6755         <clade>
6756           <name>b_277</name>
6757           <taxonomy>
6758             <id provider="uniprot">29547</id>
6759             <scientific_name>Epsilonproteobacteria</scientific_name>
6760             <rank>class</rank>
6761           </taxonomy>
6762           <clade>
6763             <name>b_273</name>
6764             <clade>
6765               <name>NITSB</name>
6766               <taxonomy>
6767                 <id provider="uniprot">387092</id>
6768                 <code>NITSB</code>
6769                 <scientific_name>Nitratiruptor sp. (strain SB155-2)</scientific_name>
6770                 <rank>species</rank>
6771               </taxonomy>
6772             </clade>
6773             <clade>
6774               <name>SULNB</name>
6775               <taxonomy>
6776                 <id provider="uniprot">387093</id>
6777                 <code>SULNB</code>
6778                 <scientific_name>Sulfurovum sp. (strain NBC37-1)</scientific_name>
6779                 <rank>species</rank>
6780               </taxonomy>
6781             </clade>
6782           </clade>
6783           <clade>
6784             <name>b_276</name>
6785             <taxonomy>
6786               <id provider="uniprot">213849</id>
6787               <scientific_name>Campylobacterales</scientific_name>
6788               <rank>order</rank>
6789             </taxonomy>
6790             <clade>
6791               <name>CAMJE</name>
6792               <taxonomy>
6793                 <id provider="uniprot">197</id>
6794                 <code>CAMJE</code>
6795                 <scientific_name>Campylobacter jejuni</scientific_name>
6796                 <rank>species</rank>
6797               </taxonomy>
6798             </clade>
6799             <clade>
6800               <name>HELPH</name>
6801               <taxonomy>
6802                 <id provider="uniprot">357544</id>
6803                 <code>HELPH</code>
6804                 <scientific_name>Helicobacter pylori (strain HPAG1)</scientific_name>
6805               </taxonomy>
6806             </clade>
6807           </clade>
6808         </clade>
6809       </clade>
6810       <clade>
6811         <name>AQUAE</name>
6812         <taxonomy>
6813           <id provider="uniprot">63363</id>
6814           <code>AQUAE</code>
6815           <scientific_name>Aquifex aeolicus</scientific_name>
6816           <rank>species</rank>
6817         </taxonomy>
6818       </clade>
6819     </clade>
6820   </clade>
6821 </phylogeny>
6822 </phyloxml>