forester/data/tol_147.xml

   1 <?xml version="1.0" encoding="UTF-8"?>
   2 <phyloxml xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.phyloxml.org http://www.phyloxml.org/1.10/phyloxml.xsd" xmlns="http://www.phyloxml.org">
   3 <phylogeny rooted="true" rerootable="false">
   4   <clade>
   5     <name>cellular organisms</name>
   6     <clade>
   7       <taxonomy>
   8         <scientific_name>Neomura</scientific_name>
   9       </taxonomy>
  10       <clade>
  11         <taxonomy>
  12           <id provider="uniprot">2759</id>
  13           <scientific_name>Eukaryota</scientific_name>
  14           <rank>superkingdom</rank>
  15         </taxonomy>
  16         <clade>
  17           <name>Unikonta</name>
  18           <clade>
  19             <taxonomy>
  20               <id provider="uniprot">33154</id>
  21               <scientific_name>Opisthokonta</scientific_name>
  22               <common_name>Fungi/Metazoa group</common_name>
  23             </taxonomy>
  24             <clade>
  25               <taxonomy>
  26                 <scientific_name>Holozoa</scientific_name>
  27               </taxonomy>
  28               <clade>
  29                 <name>Choanoflagellatea &amp; Metazoa</name>
  30                 <clade>
  31                   <taxonomy>
  32                     <id provider="uniprot">33208</id>
  33                     <scientific_name>Metazoa</scientific_name>
  34                     <rank>kingdom</rank>
  35                   </taxonomy>
  36                   <clade>
  37                     <name>Eumetazoa</name>
  38                     <reference doi="10.1038/nature06614">
  39                     </reference>
  40                     <clade>
  41                       <name>Bilateria &amp; Cnidaria</name>
  42                       <clade>
  43                         <name>Bilateria</name>
  44                         <clade>
  45                           <name>Deuterostomia</name>
  46                           <reference doi="10.1038/nature04336">
  47                           </reference>
  48                           <clade>
  49                             <taxonomy>
  50                               <id provider="uniprot">7711</id>
  51                               <scientific_name>Chordata</scientific_name>
  52                               <rank>phylum</rank>
  53                             </taxonomy>
  54                             <clade>
  55                               <name>Urochordata &amp; Vertebrata</name>
  56                               <clade>
  57                                 <taxonomy>
  58                                   <id provider="uniprot">7742</id>
  59                                   <scientific_name>Vertebrata</scientific_name>
  60                                 </taxonomy>
  61                                 <clade>
  62                                   <taxonomy>
  63                                     <id provider="uniprot">7776</id>
  64                                     <scientific_name>Gnathostomata</scientific_name>
  65                                     <common_name>jawed vertebrates</common_name>
  66                                     <rank>superclass</rank>
  67                                   </taxonomy>
  68                                   <clade>
  69                                     <taxonomy>
  70                                       <id provider="uniprot">117571</id>
  71                                       <scientific_name>Euteleostomi</scientific_name>
  72                                     </taxonomy>
  73                                     <clade>
  74                                       <name>Tetrapoda</name>
  75                                       <clade>
  76                                         <name>Amniota</name>
  77                                         <clade>
  78                                           <taxonomy>
  79                                             <id provider="uniprot">40674</id>
  80                                             <scientific_name>Mammalia</scientific_name>
  81                                             <rank>class</rank>
  82                                           </taxonomy>
  83                                           <clade>
  84                                             <name>Theria</name>
  85                                             <clade>
  86                                               <taxonomy>
  87                                                 <id provider="uniprot">9347</id>
  88                                                 <scientific_name>Eutheria</scientific_name>
  89                                                 <common_name>Placental mammals</common_name>
  90                                               </taxonomy>
  91                                               <reference doi="10.1002/bies.200900053">
  92                                                 <desc>The new framework for understanding placental mammal evolution</desc>
  93                                               </reference>
  94                                               <clade>
  95                                                 <taxonomy>
  96                                                   <scientific_name>Boreoeutheria</scientific_name>
  97                                                   <synonym>Boreotheria</synonym>
  98                                                 </taxonomy>
  99                                                 <clade>
 100                                                   <taxonomy>
 101                                                     <id provider="uniprot">314146</id>
 102                                                     <scientific_name>Euarchontoglires</scientific_name>
 103                                                     <rank>superorder</rank>
 104                                                   </taxonomy>
 105                                                   <clade>
 106                                                     <taxonomy>
 107                                                       <scientific_name>Euarchonta</scientific_name>
 108                                                     </taxonomy>
 109                                                     <clade>
 110                                                       <taxonomy>
 111                                                         <id provider="uniprot">9443</id>
 112                                                         <scientific_name>Primates</scientific_name>
 113                                                         <rank>order</rank>
 114                                                       </taxonomy>
 115                                                       <clade>
 116                                                         <taxonomy>
 117                                                           <id provider="uniprot">376913</id>
 118                                                           <scientific_name>Haplorrhini</scientific_name>
 119                                                           <rank>suborder</rank>
 120                                                         </taxonomy>
 121                                                         <clade>
 122                                                           <taxonomy>
 123                                                             <id provider="uniprot">314293</id>
 124                                                             <scientific_name>Simiiformes</scientific_name>
 125                                                             <rank>infraorder</rank>
 126                                                           </taxonomy>
 127                                                           <clade>
 128                                                             <taxonomy>
 129                                                               <id provider="uniprot">9526</id>
 130                                                               <scientific_name>Catarrhini</scientific_name>
 131                                                             </taxonomy>
 132                                                             <clade>
 133                                                               <taxonomy>
 134                                                                 <id provider="uniprot">314295</id>
 135                                                                 <scientific_name>Hominoidea</scientific_name>
 136                                                                 <common_name>Apes</common_name>
 137                                                                 <rank>superfamily</rank>
 138                                                               </taxonomy>
 139                                                               <clade>
 140                                                                 <taxonomy>
 141                                                                   <id provider="uniprot">9604</id>
 142                                                                   <scientific_name>Hominidae</scientific_name>
 143                                                                   <common_name>Great apes</common_name>
 144                                                                   <rank>family</rank>
 145                                                                 </taxonomy>
 146                                                                 <clade>
 147                                                                   <taxonomy>
 148                                                                     <id provider="uniprot">207598</id>
 149                                                                     <scientific_name>Homininae</scientific_name>
 150                                                                     <rank>subfamily</rank>
 151                                                                   </taxonomy>
 152                                                                   <clade>
 153                                                                     <taxonomy>
 154                                                                       <scientific_name>Hominini</scientific_name>
 155                                                                       <rank>tribe</rank>
 156                                                                     </taxonomy>
 157                                                                     <clade>
 158                                                                       <taxonomy>
 159                                                                         <id provider="uniprot">9606</id>
 160                                                                         <code>HUMAN</code>
 161                                                                         <scientific_name>Homo sapiens</scientific_name>
 162                                                                         <common_name>Human</common_name>
 163                                                                         <rank>species</rank>
 164                                                                         <uri>http://www.thehindu.com/multimedia/dynamic/00029/IN05_DARWIN_29896f.jpg</uri>
 165                                                                       </taxonomy>
 166                                                                     </clade>
 167                                                                     <clade>
 168                                                                       <taxonomy>
 169                                                                         <id provider="uniprot">9598</id>
 170                                                                         <code>PANTR</code>
 171                                                                         <scientific_name>Pan troglodytes</scientific_name>
 172                                                                         <common_name>Chimpanzee</common_name>
 173                                                                         <rank>species</rank>
 174                                                                         <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/8/8b/Schimpanse_zoo-leipig.jpg/800px-Schimpanse_zoo-leipig.jpg</uri>
 175                                                                       </taxonomy>
 176                                                                     </clade>
 177                                                                   </clade>
 178                                                                   <clade>
 179                                                                     <taxonomy>
 180                                                                       <id provider="uniprot">9595</id>
 181                                                                       <code>GORGO</code>
 182                                                                       <scientific_name>Gorilla gorilla gorilla</scientific_name>
 183                                                                       <common_name>Western lowland gorilla</common_name>
 184                                                                       <rank>subspecies</rank>
 185                                                                       <uri>http://upload.wikimedia.org/wikipedia/commons/c/c7/Stavenn_Gorilla_gorilla_00.jpg</uri>
 186                                                                     </taxonomy>
 187                                                                   </clade>
 188                                                                 </clade>
 189                                                                 <clade>
 190                                                                   <taxonomy>
 191                                                                     <id provider="uniprot">9601</id>
 192                                                                     <code>PONAB</code>
 193                                                                     <scientific_name>Pongo abelii</scientific_name>
 194                                                                     <common_name>Sumatran orangutan</common_name>
 195                                                                     <synonym>Pongo pygmaeus abelii</synonym>
 196                                                                     <rank>species</rank>
 197                                                                     <uri>http://www.ism.ac.jp/~hasegawa/photos/animal3b.jpg</uri>
 198                                                                   </taxonomy>
 199                                                                 </clade>
 200                                                               </clade>
 201                                                               <clade>
 202                                                                 <taxonomy>
 203                                                                   <id provider="uniprot">61853</id>
 204                                                                   <code>NOMLE</code>
 205                                                                   <scientific_name>Nomascus leucogenys</scientific_name>
 206                                                                   <common_name>Northern white-cheeked gibbon</common_name>
 207                                                                   <synonym>Hylobates leucogenys</synonym>
 208                                                                   <synonym>Hylobates concolor leucogenys</synonym>
 209                                                                   <rank>species</rank>
 210                                                                   <uri>http://uswest.ensembl.org/img/species/pic_Nomascus_leucogenys.png</uri>
 211                                                                   <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/1/1b/Hylobates_concolor2.jpg/450px-Hylobates_concolor2.jpg</uri>
 212                                                                 </taxonomy>
 213                                                               </clade>
 214                                                             </clade>
 215                                                             <clade>
 216                                                               <taxonomy>
 217                                                                 <id provider="uniprot">9528</id>
 218                                                                 <scientific_name>Cercopithecinae</scientific_name>
 219                                                                 <rank>subfamily</rank>
 220                                                               </taxonomy>
 221                                                               <clade>
 222                                                                 <taxonomy>
 223                                                                   <id provider="uniprot">9544</id>
 224                                                                   <code>MACMU</code>
 225                                                                   <scientific_name>Macaca mulatta</scientific_name>
 226                                                                   <common_name>Rhesus macaque</common_name>
 227                                                                   <rank>species</rank>
 228                                                                   <uri>http://www.our-pets.net/images/rhesus1.jpg</uri>
 229                                                                 </taxonomy>
 230                                                               </clade>
 231                                                               <clade>
 232                                                                 <taxonomy>
 233                                                                   <id provider="uniprot">9557</id>
 234                                                                   <code>PAPHA</code>
 235                                                                   <scientific_name>Papio hamadryas</scientific_name>
 236                                                                   <common_name>Hamadryas baboon</common_name>
 237                                                                   <rank>species</rank>
 238                                                                   <uri>http://pin.primate.wisc.edu/fs/sheets/images/227lg.jpg</uri>
 239                                                                 </taxonomy>
 240                                                               </clade>
 241                                                             </clade>
 242                                                           </clade>
 243                                                           <clade>
 244                                                             <taxonomy>
 245                                                               <id provider="uniprot">9483</id>
 246                                                               <code>CALJA</code>
 247                                                               <scientific_name>Callithrix jacchus</scientific_name>
 248                                                               <common_name>White-tufted-ear marmoset</common_name>
 249                                                               <synonym>Callithrix jacchus jacchus</synonym>
 250                                                               <rank>species</rank>
 251                                                               <uri>http://www.arthurgrosset.com/mammals/photos/caljac28086.jpg</uri>
 252                                                             </taxonomy>
 253                                                           </clade>
 254                                                         </clade>
 255                                                         <clade>
 256                                                           <taxonomy>
 257                                                             <id provider="uniprot">9478</id>
 258                                                             <code>TARSY</code>
 259                                                             <scientific_name>Tarsius syrichta</scientific_name>
 260                                                             <common_name>Philippine tarsier</common_name>
 261                                                             <rank>species</rank>
 262                                                             <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0408/1425.jpeg</uri>
 263                                                           </taxonomy>
 264                                                         </clade>
 265                                                       </clade>
 266                                                       <clade>
 267                                                         <taxonomy>
 268                                                           <id provider="uniprot">376911</id>
 269                                                           <scientific_name>Strepsirrhini</scientific_name>
 270                                                           <rank>suborder</rank>
 271                                                         </taxonomy>
 272                                                         <clade>
 273                                                           <taxonomy>
 274                                                             <id provider="uniprot">30608</id>
 275                                                             <code>MICMU</code>
 276                                                             <scientific_name>Microcebus murinus</scientific_name>
 277                                                             <common_name>Lesser mouse lemur</common_name>
 278                                                             <rank>species</rank>
 279                                                             <uri>http://daniel.montagnon.pagesperso-orange.fr/images/MicrocbusMurinus.jpg</uri>
 280                                                           </taxonomy>
 281                                                         </clade>
 282                                                         <clade>
 283                                                           <taxonomy>
 284                                                             <id provider="uniprot">30611</id>
 285                                                             <code>OTOGA</code>
 286                                                             <scientific_name>Otolemur garnettii</scientific_name>
 287                                                             <common_name>Garnett&apos;s greater bushbaby</common_name>
 288                                                             <synonym>Galago garnetti</synonym>
 289                                                             <synonym>Small-eared galago</synonym>
 290                                                             <synonym>Garnett&apos;s greater bushbaby</synonym>
 291                                                             <rank>species</rank>
 292                                                             <uri>http://www.mbweni.com/images/Mbweni%20Images/naturetrail/small-earedgalago.jpg</uri>
 293                                                           </taxonomy>
 294                                                         </clade>
 295                                                       </clade>
 296                                                     </clade>
 297                                                     <clade>
 298                                                       <taxonomy>
 299                                                         <id provider="uniprot">37347</id>
 300                                                         <code>TUPBE</code>
 301                                                         <scientific_name>Tupaia belangeri</scientific_name>
 302                                                         <common_name>Common tree shrew</common_name>
 303                                                         <synonym>Tupaia glis belangeri</synonym>
 304                                                         <rank>species</rank>
 305                                                         <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/4/44/Tupaia_belangeri.JPG/800px-Tupaia_belangeri.JPG</uri>
 306                                                       </taxonomy>
 307                                                     </clade>
 308                                                   </clade>
 309                                                   <clade>
 310                                                     <taxonomy>
 311                                                       <id provider="uniprot">314147</id>
 312                                                       <scientific_name>Glires</scientific_name>
 313                                                       <common_name>Rodents and rabbits</common_name>
 314                                                     </taxonomy>
 315                                                     <clade>
 316                                                       <taxonomy>
 317                                                         <id provider="uniprot">9989</id>
 318                                                         <scientific_name>Rodentia</scientific_name>
 319                                                         <rank>order</rank>
 320                                                       </taxonomy>
 321                                                       <clade>
 322                                                         <name>Ctenohystrica &amp; Mouse-related clade</name>
 323                                                         <reference doi="10.1186/1471-2148-9-71">
 324                                                           <desc>Rodent phylogeny revised: analysis of six nuclear genes from all major rodent clades.</desc>
 325                                                         </reference>
 326                                                         <clade>
 327                                                           <taxonomy>
 328                                                             <common_name>Mouse-related clade</common_name>
 329                                                           </taxonomy>
 330                                                           <clade>
 331                                                             <taxonomy>
 332                                                               <id provider="uniprot">337687</id>
 333                                                               <scientific_name>Muroidea</scientific_name>
 334                                                             </taxonomy>
 335                                                             <clade>
 336                                                               <taxonomy>
 337                                                                 <id provider="uniprot">39107</id>
 338                                                                 <scientific_name>Murinae</scientific_name>
 339                                                                 <rank>subfamily</rank>
 340                                                               </taxonomy>
 341                                                               <clade>
 342                                                                 <taxonomy>
 343                                                                   <id provider="uniprot">10090</id>
 344                                                                   <code>MOUSE</code>
 345                                                                   <scientific_name>Mus musculus</scientific_name>
 346                                                                   <common_name>Mouse</common_name>
 347                                                                   <rank>species</rank>
 348                                                                   <uri>http://www.nsrl.ttu.edu/tmot1/images/mus_musc.jpg</uri>
 349                                                                 </taxonomy>
 350                                                               </clade>
 351                                                               <clade>
 352                                                                 <taxonomy>
 353                                                                   <id provider="uniprot">10116</id>
 354                                                                   <code>RAT</code>
 355                                                                   <scientific_name>Rattus norvegicus</scientific_name>
 356                                                                   <common_name>Rat</common_name>
 357                                                                   <rank>species</rank>
 358                                                                   <uri>http://upload.wikimedia.org/wikipedia/commons/0/01/Rattus_norvegicus_1.jpg</uri>
 359                                                                 </taxonomy>
 360                                                               </clade>
 361                                                             </clade>
 362                                                             <clade>
 363                                                               <taxonomy>
 364                                                                 <id provider="uniprot">10036</id>
 365                                                                 <code>MESAU</code>
 366                                                                 <scientific_name>Mesocricetus auratus</scientific_name>
 367                                                                 <common_name>Golden hamster</common_name>
 368                                                                 <rank>species</rank>
 369                                                                 <uri>http://www.dicts.info/img/ud/syrian_hamster.jpg</uri>
 370                                                               </taxonomy>
 371                                                             </clade>
 372                                                           </clade>
 373                                                           <clade>
 374                                                             <taxonomy>
 375                                                               <id provider="uniprot">10020</id>
 376                                                               <code>DIPOR</code>
 377                                                               <scientific_name>Dipodomys ordii</scientific_name>
 378                                                               <common_name>Ord&apos;s kangaroo rat</common_name>
 379                                                               <rank>species</rank>
 380                                                               <uri>http://www.nsrl.ttu.edu/tmot1/images/dipoordi.jpg</uri>
 381                                                             </taxonomy>
 382                                                           </clade>
 383                                                         </clade>
 384                                                         <clade>
 385                                                           <taxonomy>
 386                                                             <id provider="uniprot">10141</id>
 387                                                             <code>CAVPO</code>
 388                                                             <scientific_name>Cavia porcellus</scientific_name>
 389                                                             <common_name>Guinea pig</common_name>
 390                                                             <rank>species</rank>
 391                                                             <uri>http://archive.vetknowledge.com/files/images/guinea-pig---tan.jpg</uri>
 392                                                           </taxonomy>
 393                                                         </clade>
 394                                                       </clade>
 395                                                       <clade>
 396                                                         <taxonomy>
 397                                                           <id provider="uniprot">43179</id>
 398                                                           <code>SPETR</code>
 399                                                           <scientific_name>Spermophilus tridecemlineatus</scientific_name>
 400                                                           <common_name>Thirteen-lined ground squirrel</common_name>
 401                                                           <synonym>Ictidomys tridecemlineatus</synonym>
 402                                                           <rank>species</rank>
 403                                                           <uri>http://animaldiversity.ummz.umich.edu/site/resources/phil_myers/ADW_mammals/Rodentia/Spermophilus4345.jpg/medium.jpg</uri>
 404                                                         </taxonomy>
 405                                                       </clade>
 406                                                     </clade>
 407                                                     <clade>
 408                                                       <taxonomy>
 409                                                         <id provider="uniprot">9975</id>
 410                                                         <scientific_name>Lagomorpha</scientific_name>
 411                                                         <common_name>Rabbits, hares, pikas</common_name>
 412                                                         <rank>order</rank>
 413                                                       </taxonomy>
 414                                                       <clade>
 415                                                         <taxonomy>
 416                                                           <id provider="uniprot">9978</id>
 417                                                           <code>OCHPR</code>
 418                                                           <scientific_name>Ochotona princeps</scientific_name>
 419                                                           <common_name>Southern American pika</common_name>
 420                                                           <rank>species</rank>
 421                                                           <uri>http://upload.wikimedia.org/wikipedia/commons/3/3b/Ochotona_princeps.jpg</uri>
 422                                                         </taxonomy>
 423                                                       </clade>
 424                                                       <clade>
 425                                                         <taxonomy>
 426                                                           <id provider="uniprot">9986</id>
 427                                                           <code>RABIT</code>
 428                                                           <scientific_name>Oryctolagus cuniculus</scientific_name>
 429                                                           <common_name>Rabbit</common_name>
 430                                                           <rank>species</rank>
 431                                                           <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/3/3b/Rabbit_in_montana.jpg/675px-Rabbit_in_montana.jpg</uri>
 432                                                         </taxonomy>
 433                                                       </clade>
 434                                                     </clade>
 435                                                   </clade>
 436                                                 </clade>
 437                                                 <clade>
 438                                                   <taxonomy>
 439                                                     <id provider="uniprot">314145</id>
 440                                                     <scientific_name>Laurasiatheria</scientific_name>
 441                                                     <rank>superorder</rank>
 442                                                   </taxonomy>
 443                                                   <clade>
 444                                                     <taxonomy>
 445                                                       <scientific_name>Scrotifera</scientific_name>
 446                                                     </taxonomy>
 447                                                     <clade>
 448                                                       <name>Perissodactyla &amp; Cetartiodactyla &amp; Chiroptera</name>
 449                                                       <clade>
 450                                                         <name>Perissodactyla &amp; Cetartiodactyla</name>
 451                                                         <clade>
 452                                                           <taxonomy>
 453                                                             <id provider="uniprot">91561</id>
 454                                                             <scientific_name>Cetartiodactyla</scientific_name>
 455                                                             <common_name>Even-toed ungulates</common_name>
 456                                                           </taxonomy>
 457                                                           <clade>
 458                                                             <name>Cetruminantia &amp; Suina</name>
 459                                                             <clade>
 460                                                               <taxonomy>
 461                                                                 <scientific_name>Cetruminantia</scientific_name>
 462                                                               </taxonomy>
 463                                                               <clade>
 464                                                                 <taxonomy>
 465                                                                   <id provider="uniprot">9895</id>
 466                                                                   <scientific_name>Bovidae</scientific_name>
 467                                                                   <rank>family</rank>
 468                                                                 </taxonomy>
 469                                                                 <clade>
 470                                                                   <taxonomy>
 471                                                                     <id provider="uniprot">9913</id>
 472                                                                     <code>BOVIN</code>
 473                                                                     <scientific_name>Bos taurus</scientific_name>
 474                                                                     <common_name>Bovine</common_name>
 475                                                                     <synonym>Bos bovis</synonym>
 476                                                                     <rank>species</rank>
 477                                                                     <uri>http://bioweb.uwlax.edu/bio203/s2007/hayes_katy/images/DSC01638.JPG</uri>
 478                                                                   </taxonomy>
 479                                                                 </clade>
 480                                                                 <clade>
 481                                                                   <taxonomy>
 482                                                                     <id provider="uniprot">9940</id>
 483                                                                     <code>SHEEP</code>
 484                                                                     <scientific_name>Ovis aries</scientific_name>
 485                                                                     <common_name>Sheep</common_name>
 486                                                                     <rank>species</rank>
 487                                                                     <uri>http://animaldiversity.ummz.umich.edu/site/resources/james_dowlinghealey/blacksheep.jpg/medium.jpg</uri>
 488                                                                   </taxonomy>
 489                                                                 </clade>
 490                                                               </clade>
 491                                                               <clade>
 492                                                                 <taxonomy>
 493                                                                   <id provider="uniprot">9721</id>
 494                                                                   <scientific_name>Cetacea</scientific_name>
 495                                                                   <common_name>Whales</common_name>
 496                                                                   <rank>order</rank>
 497                                                                 </taxonomy>
 498                                                                 <clade>
 499                                                                   <taxonomy>
 500                                                                     <id provider="uniprot">9771</id>
 501                                                                     <code>BALMU</code>
 502                                                                     <scientific_name>Balaenoptera musculus</scientific_name>
 503                                                                     <common_name>Blue whale</common_name>
 504                                                                     <rank>species</rank>
 505                                                                     <uri>http://2.bp.blogspot.com/_W90V87w3sr8/TT63uRT_U9I/AAAAAAAAAo8/to9O8zEeo7k/s1600/bluewhale.jpg</uri>
 506                                                                   </taxonomy>
 507                                                                 </clade>
 508                                                                 <clade>
 509                                                                   <taxonomy>
 510                                                                     <id provider="uniprot">9739</id>
 511                                                                     <code>TURTR</code>
 512                                                                     <scientific_name>Tursiops truncatus</scientific_name>
 513                                                                     <common_name>Atlantic bottle-nosed dolphin</common_name>
 514                                                                     <synonym>Delphinus truncatus</synonym>
 515                                                                     <rank>species</rank>
 516                                                                     <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/a/a6/Bottlenose_Dolphin_KSC04pd0178.jpg/800px-Bottlenose_Dolphin_KSC04pd0178.jpg</uri>
 517                                                                   </taxonomy>
 518                                                                 </clade>
 519                                                               </clade>
 520                                                             </clade>
 521                                                             <clade>
 522                                                               <taxonomy>
 523                                                                 <id provider="uniprot">9823</id>
 524                                                                 <code>PIG</code>
 525                                                                 <scientific_name>Sus scrofa</scientific_name>
 526                                                                 <common_name>Pig</common_name>
 527                                                                 <rank>species</rank>
 528                                                                 <uri>http://www.batraciens-reptiles.com/sus%20scrofa2.jpg</uri>
 529                                                               </taxonomy>
 530                                                             </clade>
 531                                                           </clade>
 532                                                           <clade>
 533                                                             <taxonomy>
 534                                                               <id provider="uniprot">30538</id>
 535                                                               <code>LAMPA</code>
 536                                                               <scientific_name>Lama guanicoe pacos</scientific_name>
 537                                                               <common_name>Alpaca</common_name>
 538                                                               <synonym>Lama pacos</synonym>
 539                                                               <rank>species</rank>
 540                                                               <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/1206/0658.jpeg</uri>
 541                                                             </taxonomy>
 542                                                           </clade>
 543                                                         </clade>
 544                                                         <clade>
 545                                                           <taxonomy>
 546                                                             <id provider="uniprot">9796</id>
 547                                                             <code>HORSE</code>
 548                                                             <scientific_name>Equus caballus</scientific_name>
 549                                                             <common_name>Horse</common_name>
 550                                                             <rank>species</rank>
 551                                                             <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0801/0088.jpeg</uri>
 552                                                           </taxonomy>
 553                                                         </clade>
 554                                                       </clade>
 555                                                       <clade>
 556                                                         <taxonomy>
 557                                                           <id provider="uniprot">9397</id>
 558                                                           <scientific_name>Chiroptera</scientific_name>
 559                                                           <common_name>Bats</common_name>
 560                                                           <rank>order</rank>
 561                                                         </taxonomy>
 562                                                         <clade>
 563                                                           <taxonomy>
 564                                                             <id provider="uniprot">59463</id>
 565                                                             <code>MYOLU</code>
 566                                                             <scientific_name>Myotis lucifugus</scientific_name>
 567                                                             <common_name>Little brown bat</common_name>
 568                                                             <rank>species</rank>
 569                                                             <uri>http://biology.lakeheadu.ca/uploads/Nature_photography/brown_bat.jpg</uri>
 570                                                           </taxonomy>
 571                                                         </clade>
 572                                                         <clade>
 573                                                           <taxonomy>
 574                                                             <id provider="uniprot">132908</id>
 575                                                             <code>PTEVA</code>
 576                                                             <scientific_name>Pteropus vampyrus</scientific_name>
 577                                                             <common_name>Large flying fox</common_name>
 578                                                             <rank>species</rank>
 579                                                             <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/5/5e/Pteropus_vampyrus1.jpg/412px-Pteropus_vampyrus1.jpg</uri>
 580                                                           </taxonomy>
 581                                                         </clade>
 582                                                       </clade>
 583                                                     </clade>
 584                                                     <clade>
 585                                                       <name>Carnivora</name>
 586                                                       <taxonomy>
 587                                                         <id provider="uniprot">33554</id>
 588                                                         <scientific_name>Carnivora</scientific_name>
 589                                                         <rank>order</rank>
 590                                                       </taxonomy>
 591                                                       <clade>
 592                                                         <taxonomy>
 593                                                           <id provider="uniprot">379584</id>
 594                                                           <scientific_name>Caniformia</scientific_name>
 595                                                           <rank>suborder</rank>
 596                                                         </taxonomy>
 597                                                         <clade>
 598                                                           <taxonomy>
 599                                                             <id provider="uniprot">9646</id>
 600                                                             <code>AILME</code>
 601                                                             <scientific_name>Ailuropoda melanoleuca</scientific_name>
 602                                                             <common_name>Giant panda</common_name>
 603                                                             <rank>species</rank>
 604                                                             <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/3/3c/Giant_Panda_2004-03-2.jpg/800px-Giant_Panda_2004-03-2.jpg</uri>
 605                                                           </taxonomy>
 606                                                         </clade>
 607                                                         <clade>
 608                                                           <taxonomy>
 609                                                             <id provider="uniprot">9615</id>
 610                                                             <code>CANFA</code>
 611                                                             <scientific_name>Canis familiaris</scientific_name>
 612                                                             <common_name>Dog</common_name>
 613                                                             <synonym>Canis lupus familiaris</synonym>
 614                                                             <rank>subspecies</rank>
 615                                                             <uri>http://upload.wikimedia.org/wikipedia/commons/a/ab/Wikilabrador_jardin.JPG</uri>
 616                                                           </taxonomy>
 617                                                         </clade>
 618                                                       </clade>
 619                                                       <clade>
 620                                                         <taxonomy>
 621                                                           <id provider="uniprot">9685</id>
 622                                                           <code>FELCA</code>
 623                                                           <scientific_name>Felis catus</scientific_name>
 624                                                           <common_name>Cat</common_name>
 625                                                           <synonym>Felis silvestris catus</synonym>
 626                                                           <rank>species</rank>
 627                                                           <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/9/9b/Domestic_cat_cropped.jpg/755px-Domestic_cat_cropped.jpg</uri>
 628                                                         </taxonomy>
 629                                                       </clade>
 630                                                     </clade>
 631                                                   </clade>
 632                                                   <clade>
 633                                                     <taxonomy>
 634                                                       <id provider="uniprot">9362</id>
 635                                                       <scientific_name>Insectivora</scientific_name>
 636                                                       <common_name>hedgehogs, shrews, moles and others</common_name>
 637                                                       <rank>order</rank>
 638                                                     </taxonomy>
 639                                                     <clade>
 640                                                       <taxonomy>
 641                                                         <id provider="uniprot">9365</id>
 642                                                         <code>ERIEU</code>
 643                                                         <scientific_name>Erinaceus europaeus</scientific_name>
 644                                                         <common_name>Western European hedgehog</common_name>
 645                                                         <rank>species</rank>
 646                                                         <uri>http://upload.wikimedia.org/wikipedia/commons/d/d4/Igel01.jpg</uri>
 647                                                       </taxonomy>
 648                                                     </clade>
 649                                                     <clade>
 650                                                       <taxonomy>
 651                                                         <id provider="uniprot">42254</id>
 652                                                         <code>SORAR</code>
 653                                                         <scientific_name>Sorex araneus</scientific_name>
 654                                                         <common_name>Eurasian common shrew</common_name>
 655                                                         <synonym>European shrew</synonym>
 656                                                         <rank>species</rank>
 657                                                         <uri>http://www.batraciens-reptiles.com/musaraigne2.jpg</uri>
 658                                                       </taxonomy>
 659                                                     </clade>
 660                                                   </clade>
 661                                                 </clade>
 662                                               </clade>
 663                                               <clade>
 664                                                 <taxonomy>
 665                                                   <scientific_name>Atlantogenata</scientific_name>
 666                                                 </taxonomy>
 667                                                 <clade>
 668                                                   <taxonomy>
 669                                                     <id provider="uniprot">311790</id>
 670                                                     <scientific_name>Afrotheria</scientific_name>
 671                                                     <rank>superorder</rank>
 672                                                   </taxonomy>
 673                                                   <clade>
 674                                                     <taxonomy>
 675                                                       <scientific_name>Paenungulata</scientific_name>
 676                                                     </taxonomy>
 677                                                     <clade>
 678                                                       <taxonomy>
 679                                                         <id provider="uniprot">9785</id>
 680                                                         <code>LOXAF</code>
 681                                                         <scientific_name>Loxodonta africana</scientific_name>
 682                                                         <common_name>African savanna elephant</common_name>
 683                                                         <rank>species</rank>
 684                                                         <uri>http://animaldiversity.ummz.umich.edu/site/resources/susan_hoffman/elephants.jpg</uri>
 685                                                       </taxonomy>
 686                                                     </clade>
 687                                                     <clade>
 688                                                       <taxonomy>
 689                                                         <id provider="uniprot">9813</id>
 690                                                         <code>PROCA</code>
 691                                                         <scientific_name>Procavia capensis</scientific_name>
 692                                                         <common_name>Cape hyrax</common_name>
 693                                                         <synonym>Rock dassie</synonym>
 694                                                         <rank>species</rank>
 695                                                         <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/1206/0460.jpeg</uri>
 696                                                       </taxonomy>
 697                                                     </clade>
 698                                                   </clade>
 699                                                   <clade>
 700                                                     <taxonomy>
 701                                                       <id provider="uniprot">9371</id>
 702                                                       <code>ECHTE</code>
 703                                                       <scientific_name>Echinops telfairi</scientific_name>
 704                                                       <common_name>Lesser hedgehog tenrec</common_name>
 705                                                       <rank>species</rank>
 706                                                       <uri>http://animaldiversity.ummz.umich.edu/site/resources/david_kupitz/etelfairi.jpg</uri>
 707                                                     </taxonomy>
 708                                                   </clade>
 709                                                 </clade>
 710                                                 <clade>
 711                                                   <taxonomy>
 712                                                     <id provider="uniprot">9348</id>
 713                                                     <scientific_name>Xenarthra</scientific_name>
 714                                                     <synonym>Edentata</synonym>
 715                                                     <rank>superorder</rank>
 716                                                   </taxonomy>
 717                                                   <clade>
 718                                                     <taxonomy>
 719                                                       <id provider="uniprot">9358</id>
 720                                                       <code>CHOHO</code>
 721                                                       <scientific_name>Choloepus hoffmanni</scientific_name>
 722                                                       <common_name>Hoffmann&apos;s two-fingered sloth</common_name>
 723                                                       <rank>species</rank>
 724                                                       <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/8/89/Sloth8.jpg/800px-Sloth8.jpg</uri>
 725                                                     </taxonomy>
 726                                                   </clade>
 727                                                   <clade>
 728                                                     <taxonomy>
 729                                                       <id provider="uniprot">9361</id>
 730                                                       <code>DASNO</code>
 731                                                       <scientific_name>Dasypus novemcinctus</scientific_name>
 732                                                       <common_name>Nine-banded armadillo</common_name>
 733                                                       <rank>species</rank>
 734                                                       <uri>http://anthropometaphors.files.wordpress.com/2008/11/nine-banded-armadillo41.jpg</uri>
 735                                                     </taxonomy>
 736                                                   </clade>
 737                                                 </clade>
 738                                               </clade>
 739                                             </clade>
 740                                             <clade>
 741                                               <taxonomy>
 742                                                 <id provider="uniprot">9263</id>
 743                                                 <scientific_name>Metatheria</scientific_name>
 744                                                 <common_name>Marsupials</common_name>
 745                                               </taxonomy>
 746                                               <reference doi="10.1016/j.ympev.2004.05.004">
 747                                                 <desc>First combined cladistic analysis of marsupial mammal interrelationships</desc>
 748                                               </reference>
 749                                               <reference>
 750                                               </reference>
 751                                               <clade>
 752                                                 <taxonomy>
 753                                                   <scientific_name>Eometatheria</scientific_name>
 754                                                 </taxonomy>
 755                                                 <clade>
 756                                                   <taxonomy>
 757                                                     <id provider="uniprot">9315</id>
 758                                                     <code>MACEU</code>
 759                                                     <scientific_name>Macropus eugenii</scientific_name>
 760                                                     <common_name>Tammar wallaby</common_name>
 761                                                     <rank>species</rank>
 762                                                     <uri>http://upload.wikimedia.org/wikipedia/commons/d/de/Macropus_eugenii.jpg</uri>
 763                                                   </taxonomy>
 764                                                 </clade>
 765                                                 <clade>
 766                                                   <taxonomy>
 767                                                     <id provider="uniprot">9305</id>
 768                                                     <code>SARHA</code>
 769                                                     <scientific_name>Sarcophilus harrisii</scientific_name>
 770                                                     <common_name>Tasmanian devil</common_name>
 771                                                     <synonym>Sarcophilus laniarius</synonym>
 772                                                     <rank>species</rank>
 773                                                     <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/3/3b/Sarcophilus_harrisii_-Healesville_Sanctuary-8a.jpg/727px-Sarcophilus_harrisii_-Healesville_Sanctuary-8a.jpg</uri>
 774                                                   </taxonomy>
 775                                                 </clade>
 776                                               </clade>
 777                                               <clade>
 778                                                 <taxonomy>
 779                                                   <id provider="uniprot">13616</id>
 780                                                   <code>MONDO</code>
 781                                                   <scientific_name>Monodelphis domestica</scientific_name>
 782                                                   <common_name>Short-tailed gray opossum</common_name>
 783                                                   <rank>species</rank>
 784                                                   <uri>http://animaldiversity.ummz.umich.edu/site/resources/phil_myers/classic/monodelphis.jpg/medium.jpg</uri>
 785                                                 </taxonomy>
 786                                               </clade>
 787                                             </clade>
 788                                           </clade>
 789                                           <clade>
 790                                             <taxonomy>
 791                                               <id provider="uniprot">9258</id>
 792                                               <code>ORNAN</code>
 793                                               <scientific_name>Ornithorhynchus anatinus</scientific_name>
 794                                               <common_name>Duckbill platypus</common_name>
 795                                               <rank>species</rank>
 796                                               <uri>http://upload.wikimedia.org/wikipedia/commons/1/12/Platypus_BrokenRiver_QLD_Australia2.png</uri>
 797                                             </taxonomy>
 798                                           </clade>
 799                                         </clade>
 800                                         <clade>
 801                                           <taxonomy>
 802                                             <id provider="uniprot">8457</id>
 803                                             <scientific_name>Sauropsida</scientific_name>
 804                                           </taxonomy>
 805                                           <clade>
 806                                             <name>Archosauria &amp; Testudines</name>
 807                                             <reference doi="10.1038/ng.2615">
 808                                               <desc>The draft genomes of soft-shell turtle and green sea turtle yield insights into the development and evolution of the turtle-specific body plan</desc>
 809                                             </reference>
 810                                             <reference>
 811                                             </reference>
 812                                             <reference>
 813                                             </reference>
 814                                             <clade>
 815                                               <taxonomy>
 816                                                 <id provider="uniprot">8492</id>
 817                                                 <scientific_name>Archosauria</scientific_name>
 818                                               </taxonomy>
 819                                               <clade>
 820                                                 <name>Neognathae</name>
 821                                                 <taxonomy>
 822                                                   <id provider="uniprot">8825</id>
 823                                                   <scientific_name>Neognathae</scientific_name>
 824                                                   <rank>superorder</rank>
 825                                                 </taxonomy>
 826                                                 <clade>
 827                                                   <name>Phasianidae &amp; Anatidae (waterfowl)</name>
 828                                                   <clade>
 829                                                     <taxonomy>
 830                                                       <id provider="uniprot">9005</id>
 831                                                       <scientific_name>Phasianidae</scientific_name>
 832                                                       <rank>family</rank>
 833                                                     </taxonomy>
 834                                                     <clade>
 835                                                       <taxonomy>
 836                                                         <id provider="uniprot">9031</id>
 837                                                         <code>CHICK</code>
 838                                                         <scientific_name>Gallus gallus</scientific_name>
 839                                                         <common_name>Chicken</common_name>
 840                                                         <synonym>Gallus domesticus</synonym>
 841                                                         <rank>species</rank>
 842                                                         <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/f/f8/Rooster04_adjusted.jpg/800px-Rooster04_adjusted.jpg</uri>
 843                                                       </taxonomy>
 844                                                     </clade>
 845                                                     <clade>
 846                                                       <taxonomy>
 847                                                         <id provider="uniprot">9103</id>
 848                                                         <code>MELGA</code>
 849                                                         <scientific_name>Meleagris gallopavo</scientific_name>
 850                                                         <common_name>Common turkey</common_name>
 851                                                         <rank>species</rank>
 852                                                         <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0205/0858.jpeg</uri>
 853                                                       </taxonomy>
 854                                                     </clade>
 855                                                   </clade>
 856                                                   <clade>
 857                                                     <taxonomy>
 858                                                       <id provider="uniprot">8839</id>
 859                                                       <code>ANAPL</code>
 860                                                       <scientific_name>Anas platyrhynchos</scientific_name>
 861                                                       <common_name>Domestic duck</common_name>
 862                                                       <synonym>Anas boschas</synonym>
 863                                                       <rank>species</rank>
 864                                                       <uri>http://content.ornith.cornell.edu/UEWebApp/images/MPR_070302_100009_L.jpg</uri>
 865                                                     </taxonomy>
 866                                                   </clade>
 867                                                 </clade>
 868                                                 <clade>
 869                                                   <taxonomy>
 870                                                     <id provider="uniprot">59729</id>
 871                                                     <code>TAEGU</code>
 872                                                     <scientific_name>Taeniopygia guttata</scientific_name>
 873                                                     <common_name>Zebra finch</common_name>
 874                                                     <synonym>Poephila guttata</synonym>
 875                                                     <rank>species</rank>
 876                                                     <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/8/84/Taeniopygia_guttata_-_front_view_-_dundee_wildlife_park.jpg/355px-Taeniopygia_guttata_-_front_view_-_dundee_wildlife_park.jpg</uri>
 877                                                   </taxonomy>
 878                                                 </clade>
 879                                               </clade>
 880                                               <clade>
 881                                                 <taxonomy>
 882                                                   <id provider="uniprot">8496</id>
 883                                                   <code>ALLMI</code>
 884                                                   <scientific_name>Alligator mississippiensis</scientific_name>
 885                                                   <common_name>American alligator</common_name>
 886                                                   <rank>species</rank>
 887                                                   <uri>http://www.herpcenter.com/reptile-caresheets/images/american_alligator.jpg</uri>
 888                                                 </taxonomy>
 889                                               </clade>
 890                                             </clade>
 891                                             <clade>
 892                                               <taxonomy>
 893                                                 <id provider="uniprot">13735</id>
 894                                                 <code>PELSI</code>
 895                                                 <scientific_name>Pelodiscus sinensis</scientific_name>
 896                                                 <authority>(Wiegmann, 1835) Cox et al. 1998</authority>
 897                                                 <common_name>Chinese softshell turtle</common_name>
 898                                                 <synonym>Trionyx sinensis</synonym>
 899                                                 <rank>species</rank>
 900                                                 <uri>http://www.chelonia.org/PsinensisTR1.jpg</uri>
 901                                               </taxonomy>
 902                                             </clade>
 903                                           </clade>
 904                                           <clade>
 905                                             <taxonomy>
 906                                               <id provider="uniprot">28377</id>
 907                                               <code>ANOCA</code>
 908                                               <scientific_name>Anolis carolinensis</scientific_name>
 909                                               <authority>Voigt, 1832</authority>
 910                                               <common_name>Green anole</common_name>
 911                                               <synonym>American chameleon</synonym>
 912                                               <rank>species</rank>
 913                                               <uri>http://content61.eol.org/content/2009/09/20/01/05528_580_360.jpg</uri>
 914                                               <uri>http://content61.eol.org/content/2008/10/08/13/66818_580_360.jpg</uri>
 915                                               <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/5/5a/Anolis_carolinensis.jpg/800px-Anolis_carolinensis.jpg</uri>
 916                                             </taxonomy>
 917                                           </clade>
 918                                         </clade>
 919                                       </clade>
 920                                       <clade>
 921                                         <taxonomy>
 922                                           <id provider="uniprot">8353</id>
 923                                           <scientific_name>Xenopus</scientific_name>
 924                                           <rank>genus</rank>
 925                                         </taxonomy>
 926                                         <clade>
 927                                           <taxonomy>
 928                                             <id provider="uniprot">8355</id>
 929                                             <code>XENLA</code>
 930                                             <scientific_name>Xenopus laevis</scientific_name>
 931                                             <authority>Daudin, 1802</authority>
 932                                             <common_name>African clawed frog</common_name>
 933                                             <synonym>Bufo laevis</synonym>
 934                                             <rank>species</rank>
 935                                             <uri>http://upload.wikimedia.org/wikipedia/commons/e/e3/Xenopus_laevis.jpg</uri>
 936                                           </taxonomy>
 937                                         </clade>
 938                                         <clade>
 939                                           <taxonomy>
 940                                             <id provider="uniprot">8364</id>
 941                                             <code>XENTR</code>
 942                                             <scientific_name>Xenopus tropicalis</scientific_name>
 943                                             <common_name>Western clawed frog</common_name>
 944                                             <synonym>Silurana tropicalis</synonym>
 945                                             <rank>species</rank>
 946                                             <uri>http://genoweb.univ-rennes1.fr/OGP/xenopus%20tropicalis.jpg</uri>
 947                                           </taxonomy>
 948                                         </clade>
 949                                       </clade>
 950                                     </clade>
 951                                     <clade>
 952                                       <name>Teleostei</name>
 953                                       <taxonomy>
 954                                         <id provider="uniprot">32443</id>
 955                                         <scientific_name>Teleostei</scientific_name>
 956                                       </taxonomy>
 957                                       <clade>
 958                                         <taxonomy>
 959                                           <id provider="uniprot">123368</id>
 960                                           <scientific_name>Acanthomorpha</scientific_name>
 961                                         </taxonomy>
 962                                         <clade>
 963                                           <taxonomy>
 964                                             <id provider="uniprot">32485</id>
 965                                             <scientific_name>Percomorpha</scientific_name>
 966                                           </taxonomy>
 967                                           <clade>
 968                                             <taxonomy>
 969                                               <id provider="uniprot">129949</id>
 970                                               <scientific_name>Smegmamorpha</scientific_name>
 971                                             </taxonomy>
 972                                             <clade>
 973                                               <taxonomy>
 974                                                 <id provider="uniprot">32456</id>
 975                                                 <scientific_name>Atherinomorpha</scientific_name>
 976                                               </taxonomy>
 977                                               <clade>
 978                                                 <taxonomy>
 979                                                   <id provider="uniprot">8090</id>
 980                                                   <code>ORYLA</code>
 981                                                   <scientific_name>Oryzias latipes</scientific_name>
 982                                                   <common_name>Medaka fish</common_name>
 983                                                   <synonym>Japanese ricefish</synonym>
 984                                                   <rank>species</rank>
 985                                                   <uri>http://upload.wikimedia.org/wikipedia/commons/4/49/Nihonmedaka.jpg</uri>
 986                                                 </taxonomy>
 987                                               </clade>
 988                                               <clade>
 989                                                 <taxonomy>
 990                                                   <id provider="uniprot">8083</id>
 991                                                   <code>XIPMA</code>
 992                                                   <scientific_name>Xiphophorus maculatus</scientific_name>
 993                                                   <authority>Guenther, 1866</authority>
 994                                                   <common_name>Southern platyfish</common_name>
 995                                                   <synonym>Platypoecilus maculatus</synonym>
 996                                                   <rank>species</rank>
 997                                                   <uri>http://upload.wikimedia.org/wikipedia/commons/6/6b/Poissons_06.jpg</uri>
 998                                                 </taxonomy>
 999                                               </clade>
1000                                             </clade>
1001                                             <clade>
1002                                               <taxonomy>
1003                                                 <id provider="uniprot">69293</id>
1004                                                 <code>GASAC</code>
1005                                                 <scientific_name>Gasterosteus aculeatus</scientific_name>
1006                                                 <common_name>Three-spined stickleback</common_name>
1007                                                 <rank>species</rank>
1008                                                 <uri>http://www.jjphoto.dk/fish_archive/freshwater/gasterosteus_aculeatus.jpg</uri>
1009                                               </taxonomy>
1010                                             </clade>
1011                                           </clade>
1012                                           <clade>
1013                                             <taxonomy>
1014                                               <id provider="uniprot">31031</id>
1015                                               <scientific_name>Tetraodontidae</scientific_name>
1016                                               <common_name>puffers</common_name>
1017                                               <rank>family</rank>
1018                                             </taxonomy>
1019                                             <clade>
1020                                               <taxonomy>
1021                                                 <id provider="uniprot">31033</id>
1022                                                 <code>TAKRU</code>
1023                                                 <scientific_name>Takifugu rubripes</scientific_name>
1024                                                 <common_name>Japanese pufferfish</common_name>
1025                                                 <synonym>Fugu rubripes</synonym>
1026                                                 <rank>species</rank>
1027                                                 <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/2/25/Fugu_in_Tank.jpg/800px-Fugu_in_Tank.jpg</uri>
1028                                               </taxonomy>
1029                                             </clade>
1030                                             <clade>
1031                                               <taxonomy>
1032                                                 <id provider="uniprot">99883</id>
1033                                                 <code>TETNG</code>
1034                                                 <scientific_name>Tetraodon nigroviridis</scientific_name>
1035                                                 <common_name>Green puffer</common_name>
1036                                                 <synonym>Chelonodon nigroviridis</synonym>
1037                                                 <rank>species</rank>
1038                                                 <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/b/b6/Tetraodon_nigroviridis_1.jpg/800px-Tetraodon_nigroviridis_1.jpg</uri>
1039                                               </taxonomy>
1040                                             </clade>
1041                                           </clade>
1042                                           <clade>
1043                                             <taxonomy>
1044                                               <id provider="uniprot">8128</id>
1045                                               <code>ORENI</code>
1046                                               <scientific_name>Tilapia nilotica</scientific_name>
1047                                               <authority>Linnaeus, 1758</authority>
1048                                               <common_name>Nile tilapia</common_name>
1049                                               <synonym>Tilapia nilotica</synonym>
1050                                               <rank>species</rank>
1051                                               <uri>http://www.jjphoto.dk/fish_archive/warm_freshwater/oreochromis_niloticus_niloticus.jpg</uri>
1052                                             </taxonomy>
1053                                           </clade>
1054                                         </clade>
1055                                         <clade>
1056                                           <taxonomy>
1057                                             <id provider="uniprot">8049</id>
1058                                             <code>GADMO</code>
1059                                             <scientific_name>Gadus morhua</scientific_name>
1060                                             <common_name>Atlantic cod</common_name>
1061                                             <rank>species</rank>
1062                                             <uri>http://www.marinbi.com/g-morhua.jpg</uri>
1063                                           </taxonomy>
1064                                         </clade>
1065                                       </clade>
1066                                       <clade>
1067                                         <taxonomy>
1068                                           <id provider="uniprot">7955</id>
1069                                           <code>DANRE</code>
1070                                           <scientific_name>Danio rerio</scientific_name>
1071                                           <common_name>Zebrafish</common_name>
1072                                           <synonym>Brachydanio rerio</synonym>
1073                                           <rank>species</rank>
1074                                           <uri>http://fishbase.org.cn/images/species/Darer_m0.jpg</uri>
1075                                         </taxonomy>
1076                                       </clade>
1077                                     </clade>
1078                                   </clade>
1079                                   <clade>
1080                                     <taxonomy>
1081                                       <id provider="uniprot">7868</id>
1082                                       <code>CALMI</code>
1083                                       <scientific_name>Callorhynchus milii</scientific_name>
1084                                       <common_name>Australian ghost shark</common_name>
1085                                       <synonym>Australian ghost shark</synonym>
1086                                       <rank>species</rank>
1087                                       <uri>http://www.tudiscovery.com/tiburones/que_es/popup_que/asset/07914907646434433_elephant_shark_380x290.jpg</uri>
1088                                     </taxonomy>
1089                                   </clade>
1090                                 </clade>
1091                                 <clade>
1092                                   <taxonomy>
1093                                     <id provider="uniprot">7757</id>
1094                                     <code>PETMA</code>
1095                                     <scientific_name>Petromyzon marinus</scientific_name>
1096                                     <common_name>Sea lamprey</common_name>
1097                                     <rank>species</rank>
1098                                     <uri>http://www.uk-fish.info/pics/sealampray01.jpg</uri>
1099                                   </taxonomy>
1100                                 </clade>
1101                               </clade>
1102                               <clade>
1103                                 <name>Urochordata</name>
1104                                 <taxonomy>
1105                                   <id provider="uniprot">7712</id>
1106                                   <scientific_name>Urochordata</scientific_name>
1107                                   <rank>subphylum</rank>
1108                                 </taxonomy>
1109                                 <clade>
1110                                   <taxonomy>
1111                                     <id provider="uniprot">7718</id>
1112                                     <scientific_name>Ciona</scientific_name>
1113                                     <rank>genus</rank>
1114                                   </taxonomy>
1115                                   <clade>
1116                                     <taxonomy>
1117                                       <id provider="uniprot">7719</id>
1118                                       <code>CIOIN</code>
1119                                       <scientific_name>Ciona intestinalis</scientific_name>
1120                                       <common_name>Transparent sea squirt</common_name>
1121                                       <synonym>Ascidia intestinalis</synonym>
1122                                       <rank>species</rank>
1123                                       <uri>http://adl.brs.gov.au/marinepests/images/Ciona_intestinalis2.jpg</uri>
1124                                     </taxonomy>
1125                                   </clade>
1126                                   <clade>
1127                                     <taxonomy>
1128                                       <id provider="uniprot">51511</id>
1129                                       <code>CIOSA</code>
1130                                       <scientific_name>Ciona savignyi</scientific_name>
1131                                       <common_name>Pacific transparent sea squirt</common_name>
1132                                       <rank>species</rank>
1133                                       <uri>http://www.pnwscuba.com/invasives/photos/ciona4.jpg</uri>
1134                                     </taxonomy>
1135                                   </clade>
1136                                 </clade>
1137                                 <clade>
1138                                   <taxonomy>
1139                                     <id provider="ncbi">34765</id>
1140                                     <code>OIKDI</code>
1141                                     <scientific_name>Oikopleura dioica</scientific_name>
1142                                     <common_name>Tunicate</common_name>
1143                                     <rank>species</rank>
1144                                     <uri>http://jellieszone.com/images/oikopleura.jpg</uri>
1145                                   </taxonomy>
1146                                 </clade>
1147                               </clade>
1148                             </clade>
1149                             <clade>
1150                               <taxonomy>
1151                                 <id provider="uniprot">7739</id>
1152                                 <code>BRAFL</code>
1153                                 <scientific_name>Branchiostoma floridae</scientific_name>
1154                                 <common_name>Florida lancelet</common_name>
1155                                 <synonym>Amphioxus</synonym>
1156                                 <rank>species</rank>
1157                                 <uri>http://www.nicerweb.com/sketches/video/PBS-ShapeOfLife/4.8_BonesBrawnBrains/Branchiostoma_floridae.jpg</uri>
1158                               </taxonomy>
1159                             </clade>
1160                           </clade>
1161                           <clade>
1162                             <name>Hemichordata &amp; Echinodermata</name>
1163                             <clade>
1164                               <taxonomy>
1165                                 <id provider="uniprot">10224</id>
1166                                 <code>SACKO</code>
1167                                 <scientific_name>Saccoglossus kowalevskii</scientific_name>
1168                                 <authority>Agassiz, 1873</authority>
1169                                 <common_name>Acorn worm</common_name>
1170                                 <rank>species</rank>
1171                                 <uri>http://faculty.washington.edu/bjswalla/Hemichordata/Enteropneusta/SkowAK.jpg</uri>
1172                               </taxonomy>
1173                             </clade>
1174                             <clade>
1175                               <taxonomy>
1176                                 <id provider="uniprot">7668</id>
1177                                 <code>STRPU</code>
1178                                 <scientific_name>Strongylocentrotus purpuratus</scientific_name>
1179                                 <common_name>Purple sea urchin</common_name>
1180                                 <rank>species</rank>
1181                                 <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/f/f4/Strongylocentrotus_purpuratus_1.jpg/724px-Strongylocentrotus_purpuratus_1.jpg</uri>
1182                               </taxonomy>
1183                             </clade>
1184                           </clade>
1185                         </clade>
1186                         <clade>
1187                           <name>Protostomia</name>
1188                           <clade>
1189                             <name>Ecdysozoa</name>
1190                             <clade>
1191                               <taxonomy>
1192                                 <id provider="uniprot">6656</id>
1193                                 <scientific_name>Arthropoda</scientific_name>
1194                                 <rank>phylum</rank>
1195                               </taxonomy>
1196                               <clade>
1197                                 <taxonomy>
1198                                   <id provider="uniprot">197563</id>
1199                                   <scientific_name>Mandibulata</scientific_name>
1200                                 </taxonomy>
1201                                 <clade>
1202                                   <name>Pancrustacea</name>
1203                                   <clade>
1204                                     <taxonomy>
1205                                       <id provider="uniprot">33340</id>
1206                                       <scientific_name>Neoptera</scientific_name>
1207                                       <rank>subclass</rank>
1208                                     </taxonomy>
1209                                     <clade>
1210                                       <taxonomy>
1211                                         <id provider="uniprot">33392</id>
1212                                         <scientific_name>Endopterygota</scientific_name>
1213                                         <rank>infraclass</rank>
1214                                       </taxonomy>
1215                                       <clade>
1216                                         <name>Hymenoptera &amp; Lepidoptera &amp; Diptera</name>
1217                                         <clade>
1218                                           <name>Lepidoptera &amp; Diptera</name>
1219                                           <clade>
1220                                             <taxonomy>
1221                                               <id provider="uniprot">7147</id>
1222                                               <scientific_name>Diptera</scientific_name>
1223                                               <rank>order</rank>
1224                                             </taxonomy>
1225                                             <clade>
1226                                               <taxonomy>
1227                                                 <id provider="uniprot">7215</id>
1228                                                 <scientific_name>Drosophila</scientific_name>
1229                                                 <common_name>fruit flies</common_name>
1230                                                 <rank>genus</rank>
1231                                               </taxonomy>
1232                                               <reference doi="10.1534/genetics.111.126540">
1233                                                 <desc>The 19 Genomes of Drosophila: A BAC Library Resource for Genus-Wide and Genome-Scale Comparative Evolutionary Research</desc>
1234                                               </reference>
1235                                               <clade>
1236                                                 <taxonomy>
1237                                                   <id provider="uniprot">32341</id>
1238                                                   <scientific_name>Sophophora</scientific_name>
1239                                                   <rank>subgenus</rank>
1240                                                 </taxonomy>
1241                                                 <clade>
1242                                                   <name>melanogaster &amp; pseudoobscura subgroups</name>
1243                                                   <clade>
1244                                                     <taxonomy>
1245                                                       <id provider="uniprot">32346</id>
1246                                                       <scientific_name>melanogaster group</scientific_name>
1247                                                     </taxonomy>
1248                                                     <clade>
1249                                                       <taxonomy>
1250                                                         <id provider="uniprot">32351</id>
1251                                                         <scientific_name>melanogaster subgroup</scientific_name>
1252                                                       </taxonomy>
1253                                                       <clade>
1254                                                         <name>DROSE &amp; DROSI &amp; DROME &amp; DROYA</name>
1255                                                         <clade>
1256                                                           <name>DROSE &amp; DROSI &amp; DROME</name>
1257                                                           <clade>
1258                                                             <name>DROSE &amp; DROSI</name>
1259                                                             <clade>
1260                                                               <taxonomy>
1261                                                                 <id provider="uniprot">7238</id>
1262                                                                 <code>DROSE</code>
1263                                                                 <scientific_name>Drosophila sechellia</scientific_name>
1264                                                                 <common_name>Fruit fly</common_name>
1265                                                                 <rank>species</rank>
1266                                                               </taxonomy>
1267                                                             </clade>
1268                                                             <clade>
1269                                                               <taxonomy>
1270                                                                 <id provider="uniprot">7240</id>
1271                                                                 <code>DROSI</code>
1272                                                                 <scientific_name>Drosophila simulans</scientific_name>
1273                                                                 <common_name>Fruit fly</common_name>
1274                                                                 <rank>species</rank>
1275                                                               </taxonomy>
1276                                                             </clade>
1277                                                           </clade>
1278                                                           <clade>
1279                                                             <taxonomy>
1280                                                               <id provider="uniprot">7227</id>
1281                                                               <code>DROME</code>
1282                                                               <scientific_name>Drosophila melanogaster</scientific_name>
1283                                                               <common_name>Fruit fly</common_name>
1284                                                               <rank>species</rank>
1285                                                               <uri>http://www.snv.jussieu.fr/bmedia/ATP/images/dro-mal1.jpg</uri>
1286                                                             </taxonomy>
1287                                                           </clade>
1288                                                         </clade>
1289                                                         <clade>
1290                                                           <taxonomy>
1291                                                             <id provider="uniprot">7245</id>
1292                                                             <code>DROYA</code>
1293                                                             <scientific_name>Drosophila yakuba</scientific_name>
1294                                                             <common_name>Fruit fly</common_name>
1295                                                             <rank>species</rank>
1296                                                           </taxonomy>
1297                                                         </clade>
1298                                                       </clade>
1299                                                       <clade>
1300                                                         <taxonomy>
1301                                                           <id provider="uniprot">7220</id>
1302                                                           <code>DROER</code>
1303                                                           <scientific_name>Drosophila erecta</scientific_name>
1304                                                           <common_name>Fruit fly</common_name>
1305                                                           <rank>species</rank>
1306                                                         </taxonomy>
1307                                                       </clade>
1308                                                     </clade>
1309                                                     <clade>
1310                                                       <taxonomy>
1311                                                         <id provider="uniprot">7217</id>
1312                                                         <code>DROAN</code>
1313                                                         <scientific_name>Drosophila ananassae</scientific_name>
1314                                                         <common_name>Fruit fly</common_name>
1315                                                         <rank>species</rank>
1316                                                       </taxonomy>
1317                                                     </clade>
1318                                                   </clade>
1319                                                   <clade>
1320                                                     <taxonomy>
1321                                                       <id provider="uniprot">32358</id>
1322                                                       <scientific_name>pseudoobscura subgroup</scientific_name>
1323                                                     </taxonomy>
1324                                                     <clade>
1325                                                       <taxonomy>
1326                                                         <id provider="uniprot">7234</id>
1327                                                         <code>DROPE</code>
1328                                                         <scientific_name>Drosophila persimilis</scientific_name>
1329                                                         <common_name>Fruit fly</common_name>
1330                                                         <rank>species</rank>
1331                                                       </taxonomy>
1332                                                     </clade>
1333                                                     <clade>
1334                                                       <taxonomy>
1335                                                         <id provider="uniprot">46245</id>
1336                                                         <code>DROPS</code>
1337                                                         <scientific_name>Drosophila pseudoobscura pseudoobscura</scientific_name>
1338                                                         <common_name>Fruit fly</common_name>
1339                                                         <rank>subspecies</rank>
1340                                                         <uri>http://www.naylorgallery.com/wp-content/uploads/fly4stack01small.jpg</uri>
1341                                                       </taxonomy>
1342                                                     </clade>
1343                                                   </clade>
1344                                                 </clade>
1345                                                 <clade>
1346                                                   <taxonomy>
1347                                                     <id provider="uniprot">7260</id>
1348                                                     <code>DROWI</code>
1349                                                     <scientific_name>Drosophila willistoni</scientific_name>
1350                                                     <common_name>Fruit fly</common_name>
1351                                                     <rank>species</rank>
1352                                                   </taxonomy>
1353                                                 </clade>
1354                                               </clade>
1355                                               <clade>
1356                                                 <name>Drosophila subgenus &amp; Hawaiian Drosophila</name>
1357                                                 <clade>
1358                                                   <taxonomy>
1359                                                     <scientific_name>Drosophila</scientific_name>
1360                                                     <rank>subgenus</rank>
1361                                                   </taxonomy>
1362                                                   <clade>
1363                                                     <taxonomy>
1364                                                       <id provider="uniprot">7230</id>
1365                                                       <code>DROMO</code>
1366                                                       <scientific_name>Drosophila mojavensis</scientific_name>
1367                                                       <common_name>Fruit fly</common_name>
1368                                                       <rank>species</rank>
1369                                                     </taxonomy>
1370                                                   </clade>
1371                                                   <clade>
1372                                                     <taxonomy>
1373                                                       <id provider="uniprot">7244</id>
1374                                                       <code>DROVI</code>
1375                                                       <scientific_name>Drosophila virilis</scientific_name>
1376                                                       <common_name>Fruit fly</common_name>
1377                                                       <rank>species</rank>
1378                                                     </taxonomy>
1379                                                   </clade>
1380                                                 </clade>
1381                                                 <clade>
1382                                                   <taxonomy>
1383                                                     <id provider="uniprot">7222</id>
1384                                                     <code>DROGR</code>
1385                                                     <scientific_name>Drosophila grimshawi</scientific_name>
1386                                                     <common_name>Fruit fly</common_name>
1387                                                     <synonym>Idiomyia grimshawi</synonym>
1388                                                     <rank>species</rank>
1389                                                     <uri>http://www.pacificislandbooks.com/fruitf~1.jpg</uri>
1390                                                   </taxonomy>
1391                                                 </clade>
1392                                               </clade>
1393                                             </clade>
1394                                             <clade>
1395                                               <taxonomy>
1396                                                 <id provider="uniprot">7157</id>
1397                                                 <scientific_name>Culicidae</scientific_name>
1398                                                 <common_name>mosquitos</common_name>
1399                                                 <rank>family</rank>
1400                                               </taxonomy>
1401                                               <clade>
1402                                                 <taxonomy>
1403                                                   <id provider="uniprot">7159</id>
1404                                                   <code>AEDAE</code>
1405                                                   <scientific_name>Aedes aegypti</scientific_name>
1406                                                   <common_name>Yellowfever mosquito</common_name>
1407                                                   <synonym>Culex aegypti</synonym>
1408                                                   <rank>species</rank>
1409                                                   <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/4/48/Aedes_aegypti_biting_human.jpg/757px-Aedes_aegypti_biting_human.jpg</uri>
1410                                                 </taxonomy>
1411                                               </clade>
1412                                               <clade>
1413                                                 <taxonomy>
1414                                                   <id provider="uniprot">7165</id>
1415                                                   <code>ANOGA</code>
1416                                                   <scientific_name>Anopheles gambiae</scientific_name>
1417                                                   <common_name>African malaria mosquito</common_name>
1418                                                   <rank>species</rank>
1419                                                   <uri>http://upload.wikimedia.org/wikipedia/commons/e/e9/Anopheles_gambiae_Mosquito.jpg</uri>
1420                                                 </taxonomy>
1421                                               </clade>
1422                                               <clade>
1423                                                 <taxonomy>
1424                                                   <id provider="uniprot">7175</id>
1425                                                   <code>CULPI</code>
1426                                                   <scientific_name>Culex pipiens</scientific_name>
1427                                                   <common_name>House mosquito</common_name>
1428                                                   <rank>species</rank>
1429                                                   <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/3/35/Culex_pipiens_2007-1.jpg/628px-Culex_pipiens_2007-1.jpg</uri>
1430                                                 </taxonomy>
1431                                               </clade>
1432                                             </clade>
1433                                           </clade>
1434                                           <clade>
1435                                             <taxonomy>
1436                                               <id provider="uniprot">7091</id>
1437                                               <code>BOMMO</code>
1438                                               <scientific_name>Bombyx mori</scientific_name>
1439                                               <common_name>Silk moth</common_name>
1440                                               <rank>species</rank>
1441                                               <uri>http://lepidoptera.butterflyhouse.com.au/bomb/mori5.jpg</uri>
1442                                             </taxonomy>
1443                                           </clade>
1444                                         </clade>
1445                                         <clade>
1446                                           <taxonomy>
1447                                             <id provider="uniprot">7400</id>
1448                                             <scientific_name>Apocrita</scientific_name>
1449                                             <common_name>wasps, ants and bees</common_name>
1450                                           </taxonomy>
1451                                           <clade>
1452                                             <taxonomy>
1453                                               <id provider="uniprot">7434</id>
1454                                               <scientific_name>Aculeata</scientific_name>
1455                                               <rank>suborder</rank>
1456                                             </taxonomy>
1457                                             <clade>
1458                                               <taxonomy>
1459                                                 <id provider="uniprot">7460</id>
1460                                                 <code>APIME</code>
1461                                                 <scientific_name>Apis mellifera</scientific_name>
1462                                                 <common_name>Honeybee</common_name>
1463                                                 <rank>species</rank>
1464                                                 <uri>http://www.floridanature.org/photos/Apis_mellifera_6b_&amp;_Trifolium_sp.,_TBP,_Tallahassee,_20030323.jpg</uri>
1465                                               </taxonomy>
1466                                             </clade>
1467                                             <clade>
1468                                               <taxonomy>
1469                                                 <id provider="uniprot">12957</id>
1470                                                 <code>ATTCE</code>
1471                                                 <scientific_name>Atta cephalotes</scientific_name>
1472                                                 <authority>Linnaeus, 1758</authority>
1473                                                 <common_name>Leafcutter ant</common_name>
1474                                                 <rank>species</rank>
1475                                                 <uri>http://upload.wikimedia.org/wikipedia/commons/4/4e/Leaf-cutting_ant.jpg</uri>
1476                                               </taxonomy>
1477                                             </clade>
1478                                           </clade>
1479                                           <clade>
1480                                             <taxonomy>
1481                                               <id provider="uniprot">7425</id>
1482                                               <code>NASVI</code>
1483                                               <scientific_name>Nasonia vitripennis</scientific_name>
1484                                               <common_name>Parasitic wasp</common_name>
1485                                               <rank>species</rank>
1486                                               <uri>http://www.freshpond.org/nasonia.jpg</uri>
1487                                             </taxonomy>
1488                                           </clade>
1489                                         </clade>
1490                                       </clade>
1491                                       <clade>
1492                                         <taxonomy>
1493                                           <id provider="uniprot">7070</id>
1494                                           <code>TRICA</code>
1495                                           <scientific_name>Tribolium castaneum</scientific_name>
1496                                           <common_name>Red flour beetle</common_name>
1497                                           <rank>species</rank>
1498                                           <uri>http://www.ars.usda.gov/sp2UserFiles/Place/54300530/proj/tribolium/rfb.jpg</uri>
1499                                         </taxonomy>
1500                                       </clade>
1501                                     </clade>
1502                                     <clade>
1503                                       <taxonomy>
1504                                         <id provider="uniprot">33342</id>
1505                                         <scientific_name>Paraneoptera</scientific_name>
1506                                         <rank>infraclass</rank>
1507                                       </taxonomy>
1508                                       <clade>
1509                                         <taxonomy>
1510                                           <id provider="uniprot">7524</id>
1511                                           <scientific_name>Hemiptera</scientific_name>
1512                                           <rank>order</rank>
1513                                         </taxonomy>
1514                                         <clade>
1515                                           <taxonomy>
1516                                             <id provider="uniprot">7029</id>
1517                                             <code>ACYPI</code>
1518                                             <scientific_name>Acyrthosiphon pisum</scientific_name>
1519                                             <common_name>Pea aphid</common_name>
1520                                             <rank>species</rank>
1521                                             <uri>http://www.agroatlas.ru/content/pests/Acyrthosiphon_pisum/Acyrthosiphon_pisum.jpg</uri>
1522                                           </taxonomy>
1523                                         </clade>
1524                                         <clade>
1525                                           <taxonomy>
1526                                             <id provider="uniprot">13249</id>
1527                                             <code>RHOPR</code>
1528                                             <scientific_name>Rhodnius prolixus</scientific_name>
1529                                             <common_name>Triatomid bug</common_name>
1530                                             <rank>species</rank>
1531                                             <uri>http://upload.wikimedia.org/wikipedia/commons/b/b9/Rhodnius_prolixus.jpg</uri>
1532                                           </taxonomy>
1533                                         </clade>
1534                                       </clade>
1535                                       <clade>
1536                                         <taxonomy>
1537                                           <id provider="uniprot">121224</id>
1538                                           <code>PEDHC</code>
1539                                           <scientific_name>Pediculus humanus subsp. corporis</scientific_name>
1540                                           <common_name>Body louse</common_name>
1541                                           <rank>subspecies</rank>
1542                                           <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/9/92/Body_lice.jpg/436px-Body_lice.jpg</uri>
1543                                         </taxonomy>
1544                                       </clade>
1545                                     </clade>
1546                                   </clade>
1547                                   <clade>
1548                                     <taxonomy>
1549                                       <id provider="uniprot">6658</id>
1550                                       <scientific_name>Branchiopoda</scientific_name>
1551                                       <rank>class</rank>
1552                                     </taxonomy>
1553                                     <clade>
1554                                       <taxonomy>
1555                                         <id provider="uniprot">6661</id>
1556                                         <code>ARTSF</code>
1557                                         <scientific_name>Artemia franciscana</scientific_name>
1558                                         <common_name>Brine shrimp</common_name>
1559                                         <synonym>Artemia sanfranciscana</synonym>
1560                                         <rank>species</rank>
1561                                         <uri>http://www.alireza-asem.ir/images/Artemia.jpg</uri>
1562                                       </taxonomy>
1563                                     </clade>
1564                                     <clade>
1565                                       <taxonomy>
1566                                         <id provider="uniprot">6669</id>
1567                                         <code>DAPPU</code>
1568                                         <scientific_name>Daphnia pulex</scientific_name>
1569                                         <common_name>Water flea</common_name>
1570                                         <rank>species</rank>
1571                                         <uri>http://www.microscopy-uk.org.uk/mag/imgjun99/daphni.jpg</uri>
1572                                       </taxonomy>
1573                                     </clade>
1574                                   </clade>
1575                                 </clade>
1576                                 <clade>
1577                                   <taxonomy>
1578                                     <id provider="uniprot">61985</id>
1579                                     <scientific_name>Myriapoda</scientific_name>
1580                                     <rank>subphylum</rank>
1581                                   </taxonomy>
1582                                   <clade>
1583                                     <taxonomy>
1584                                       <id provider="uniprot">7553</id>
1585                                       <scientific_name>Diplopoda</scientific_name>
1586                                       <common_name>millipedes</common_name>
1587                                       <rank>class</rank>
1588                                     </taxonomy>
1589                                     <clade>
1590                                       <taxonomy>
1591                                         <id provider="uniprot">118561</id>
1592                                         <scientific_name>Helminthomorpha</scientific_name>
1593                                         <rank>subclass</rank>
1594                                       </taxonomy>
1595                                       <clade>
1596                                         <taxonomy>
1597                                           <id provider="uniprot">364406</id>
1598                                           <scientific_name>Antrokoreana gracilipes</scientific_name>
1599                                           <rank>species</rank>
1600                                           <uri>http://www.gwbaekdu.com/data/2d/%EA%B3%A1%EC%84%9D%EA%B5%B4_4(%EB%93%B1%EC%A4%84%EA%B5%B4%EB%85%B8%EB%9E%98%EA%B8%B0).jpg</uri>
1601                                         </taxonomy>
1602                                       </clade>
1603                                       <clade>
1604                                         <taxonomy>
1605                                           <id provider="uniprot">174156</id>
1606                                           <code>NARAN</code>
1607                                           <scientific_name>Narceus annularis</scientific_name>
1608                                           <common_name>Millipede</common_name>
1609                                           <rank>species</rank>
1610                                           <uri>http://i.pbase.com/g4/59/68959/2/59864073.narceus0705062large.jpg</uri>
1611                                         </taxonomy>
1612                                       </clade>
1613                                     </clade>
1614                                     <clade>
1615                                       <taxonomy>
1616                                         <id provider="uniprot">52428</id>
1617                                         <scientific_name>Polyxenus lagurus</scientific_name>
1618                                         <common_name>bristly millipede</common_name>
1619                                         <rank>species</rank>
1620                                         <uri>http://upload.wikimedia.org/wikipedia/commons/5/54/Polyxenus.lagurus.1.jpg</uri>
1621                                       </taxonomy>
1622                                     </clade>
1623                                   </clade>
1624                                   <clade>
1625                                     <taxonomy>
1626                                       <id provider="uniprot">7540</id>
1627                                       <scientific_name>Chilopoda</scientific_name>
1628                                       <common_name>centipedes</common_name>
1629                                       <rank>class</rank>
1630                                     </taxonomy>
1631                                     <clade>
1632                                       <taxonomy>
1633                                         <id provider="uniprot">29022</id>
1634                                         <code>SCUCO</code>
1635                                         <scientific_name>Scutigera coleoptrata</scientific_name>
1636                                         <common_name>House centipede</common_name>
1637                                         <rank>species</rank>
1638                                         <uri>http://upload.wikimedia.org/wikipedia/commons/1/14/Scutigera_coleoptrata.JPG</uri>
1639                                       </taxonomy>
1640                                     </clade>
1641                                     <clade>
1642                                       <taxonomy>
1643                                         <id provider="uniprot">126957</id>
1644                                         <scientific_name>Strigamia maritima</scientific_name>
1645                                         <rank>species</rank>
1646                                         <uri>http://images.marinespecies.org/resized/22703_strigamia-maritima-male-loch-linnhe-scotland.jpg</uri>
1647                                       </taxonomy>
1648                                     </clade>
1649                                   </clade>
1650                                 </clade>
1651                               </clade>
1652                               <clade>
1653                                 <taxonomy>
1654                                   <id provider="uniprot">6945</id>
1655                                   <code>IXOSC</code>
1656                                   <scientific_name>Ixodes scapularis</scientific_name>
1657                                   <common_name>Black-legged tick</common_name>
1658                                   <synonym>Deer tick</synonym>
1659                                   <rank>species</rank>
1660                                   <uri>http://upload.wikimedia.org/wikipedia/commons/8/8c/Deertick.jpg</uri>
1661                                 </taxonomy>
1662                               </clade>
1663                             </clade>
1664                             <clade>
1665                               <taxonomy>
1666                                 <id provider="uniprot">119089</id>
1667                                 <scientific_name>Chromadorea</scientific_name>
1668                                 <rank>class</rank>
1669                               </taxonomy>
1670                               <reference doi="10.1038/32160">
1671                               </reference>
1672                               <clade>
1673                                 <name>nematode Clade V</name>
1674                                 <clade>
1675                                   <taxonomy>
1676                                     <id provider="uniprot">6237</id>
1677                                     <scientific_name>Caenorhabditis</scientific_name>
1678                                     <rank>genus</rank>
1679                                   </taxonomy>
1680                                   <reference doi="10.1073/pnas.0403094101">
1681                                     <desc>Caenorhabditis phylogeny predicts convergence of hermaphroditism and extensive intron loss</desc>
1682                                   </reference>
1683                                   <clade>
1684                                     <name>CAEBR &amp; CAERE &amp; CAEBE &amp; CAEEL</name>
1685                                     <clade>
1686                                       <name>CAEBR &amp; CAERE &amp; CAEBE</name>
1687                                       <clade>
1688                                         <name>CAEBR &amp; CAERE</name>
1689                                         <clade>
1690                                           <taxonomy>
1691                                             <id provider="uniprot">6238</id>
1692                                             <code>CAEBR</code>
1693                                             <scientific_name>Caenorhabditis briggsae</scientific_name>
1694                                             <rank>species</rank>
1695                                             <uri>http://www.life.umd.edu/biology/haag/briggsae_herm.jpg</uri>
1696                                           </taxonomy>
1697                                         </clade>
1698                                         <clade>
1699                                           <taxonomy>
1700                                             <id provider="uniprot">31234</id>
1701                                             <code>CAERE</code>
1702                                             <scientific_name>Caenorhabditis remanei</scientific_name>
1703                                             <synonym>Caenorhabditis vulgaris</synonym>
1704                                             <rank>species</rank>
1705                                             <uri>http://lemur.amu.edu.pl/share/php/mirnest/species_images/Caenorhabditis_remanei.jpg</uri>
1706                                           </taxonomy>
1707                                         </clade>
1708                                       </clade>
1709                                       <clade>
1710                                         <taxonomy>
1711                                           <id provider="uniprot">135651</id>
1712                                           <code>CAEBE</code>
1713                                           <scientific_name>Caenorhabditis brenneri</scientific_name>
1714                                           <common_name>Nematode worm</common_name>
1715                                           <synonym>Caenorhabditis CB5161</synonym>
1716                                           <rank>species</rank>
1717                                         </taxonomy>
1718                                       </clade>
1719                                     </clade>
1720                                     <clade>
1721                                       <taxonomy>
1722                                         <id provider="uniprot">6239</id>
1723                                         <code>CAEEL</code>
1724                                         <scientific_name>Caenorhabditis elegans</scientific_name>
1725                                         <rank>species</rank>
1726                                         <uri>http://homepages.ed.ac.uk/mbx/C_elegans/N2_picture.gif</uri>
1727                                       </taxonomy>
1728                                     </clade>
1729                                   </clade>
1730                                   <clade>
1731                                     <taxonomy>
1732                                       <id provider="uniprot">281687</id>
1733                                       <code>CAEJA</code>
1734                                       <scientific_name>Caenorhabditis japonica</scientific_name>
1735                                       <rank>species</rank>
1736                                     </taxonomy>
1737                                   </clade>
1738                                 </clade>
1739                                 <clade>
1740                                   <taxonomy>
1741                                     <id provider="uniprot">54126</id>
1742                                     <code>PRIPA</code>
1743                                     <scientific_name>Pristionchus pacificus</scientific_name>
1744                                     <rank>species</rank>
1745                                     <uri>http://smithlabdb.usc.edu/images/Pristionchus_pacificus.jpg</uri>
1746                                   </taxonomy>
1747                                 </clade>
1748                               </clade>
1749                               <clade>
1750                                 <taxonomy>
1751                                   <id provider="uniprot">6279</id>
1752                                   <code>BRUMA</code>
1753                                   <scientific_name>Brugia malayi</scientific_name>
1754                                   <common_name>Filarial nematode worm</common_name>
1755                                   <rank>species</rank>
1756                                   <uri>http://upload.wikimedia.org/wikipedia/commons/4/4a/Brugia_malayi.JPG</uri>
1757                                 </taxonomy>
1758                               </clade>
1759                             </clade>
1760                           </clade>
1761                           <clade>
1762                             <name>Lophotrochozoa</name>
1763                             <clade>
1764                               <name>Annelida &amp; Mollusca</name>
1765                               <clade>
1766                                 <taxonomy>
1767                                   <id provider="uniprot">6447</id>
1768                                   <scientific_name>Mollusca</scientific_name>
1769                                   <rank>phylum</rank>
1770                                 </taxonomy>
1771                                 <clade>
1772                                   <taxonomy>
1773                                     <id provider="uniprot">6448</id>
1774                                     <scientific_name>Gastropoda</scientific_name>
1775                                     <rank>class</rank>
1776                                   </taxonomy>
1777                                   <clade>
1778                                     <taxonomy>
1779                                       <id provider="uniprot">6500</id>
1780                                       <code>APLCA</code>
1781                                       <scientific_name>Aplysia californica</scientific_name>
1782                                       <common_name>California sea hare</common_name>
1783                                       <rank>species</rank>
1784                                       <uri>http://upload.wikimedia.org/wikipedia/commons/e/ef/Aplysia_californica.jpg</uri>
1785                                     </taxonomy>
1786                                   </clade>
1787                                   <clade>
1788                                     <taxonomy>
1789                                       <id provider="uniprot">225164</id>
1790                                       <code>LOTGI</code>
1791                                       <scientific_name>Lottia gigantea</scientific_name>
1792                                       <common_name>Owl limpet</common_name>
1793                                       <rank>species</rank>
1794                                       <uri>http://nathistoc.bio.uci.edu/Molluscs/OwlLimpet1.jpg</uri>
1795                                     </taxonomy>
1796                                   </clade>
1797                                 </clade>
1798                                 <clade>
1799                                   <taxonomy>
1800                                     <id provider="uniprot">6545</id>
1801                                     <scientific_name>Pteriomorphia</scientific_name>
1802                                     <synonym>Pteriomorpha</synonym>
1803                                     <rank>subclass</rank>
1804                                   </taxonomy>
1805                                   <clade>
1806                                     <taxonomy>
1807                                       <id provider="uniprot">29159</id>
1808                                       <code>CRAGI</code>
1809                                       <scientific_name>Crassostrea gigas</scientific_name>
1810                                       <authority>Thunberg, 1793</authority>
1811                                       <common_name>Pacific oyster</common_name>
1812                                       <synonym>Crassotrea gigas</synonym>
1813                                       <synonym>Crassostrea angulata</synonym>
1814                                       <synonym>Ostrea gigas</synonym>
1815                                       <rank>species</rank>
1816                                       <uri>http://www.marlin.ac.uk/imgs/o_cragig.jpg</uri>
1817                                     </taxonomy>
1818                                   </clade>
1819                                   <clade>
1820                                     <taxonomy>
1821                                       <id provider="uniprot">50426</id>
1822                                       <code>PINFU</code>
1823                                       <scientific_name>Pinctada fucata</scientific_name>
1824                                       <common_name>Pearl oyster</common_name>
1825                                       <rank>species</rank>
1826                                       <uri>http://www.elrincondelmalacologo.com/Web%20fotos%20marinos%20no%20gasteropodos/Fotos%20coleccion/Pteriidae/Pinctada%20fucata.jpg</uri>
1827                                     </taxonomy>
1828                                   </clade>
1829                                 </clade>
1830                               </clade>
1831                               <clade>
1832                                 <taxonomy>
1833                                   <id provider="uniprot">6340</id>
1834                                   <scientific_name>Annelida</scientific_name>
1835                                   <rank>phylum</rank>
1836                                 </taxonomy>
1837                                 <clade>
1838                                   <taxonomy>
1839                                     <id provider="uniprot">283909</id>
1840                                     <code>CTEXX</code>
1841                                     <scientific_name>Capitella teleta</scientific_name>
1842                                     <authority>Blake, Grassle &amp; Eckelbarger, 2009</authority>
1843                                     <synonym>Capitella sp. I</synonym>
1844                                     <rank>species</rank>
1845                                     <uri>http://genome.jgi-psf.org/Capca1/capitella.jpg</uri>
1846                                   </taxonomy>
1847                                 </clade>
1848                                 <clade>
1849                                   <taxonomy>
1850                                     <id provider="uniprot">6412</id>
1851                                     <code>HELRO</code>
1852                                     <scientific_name>Helobdella robusta</scientific_name>
1853                                     <common_name>Californian leech</common_name>
1854                                     <rank>species</rank>
1855                                     <uri>http://genome.jgi-psf.org/Helro1/Helro_leech.jpg</uri>
1856                                   </taxonomy>
1857                                 </clade>
1858                               </clade>
1859                             </clade>
1860                             <clade>
1861                               <taxonomy>
1862                                 <id provider="uniprot">6157</id>
1863                                 <scientific_name>Platyhelminthes</scientific_name>
1864                                 <rank>phylum</rank>
1865                               </taxonomy>
1866                               <clade>
1867                                 <taxonomy>
1868                                   <id provider="uniprot">6183</id>
1869                                   <code>SCHMA</code>
1870                                   <scientific_name>Schistosoma mansoni</scientific_name>
1871                                   <common_name>Blood fluke</common_name>
1872                                   <rank>species</rank>
1873                                   <uri>http://animaldiversity.ummz.umich.edu/site/resources/Grzimek_inverts/Trematoda/Schistosoma_mansoni.jpg/medium.jpg</uri>
1874                                 </taxonomy>
1875                               </clade>
1876                               <clade>
1877                                 <taxonomy>
1878                                   <id provider="uniprot">79327</id>
1879                                   <code>SCHMD</code>
1880                                   <scientific_name>Schmidtea mediterranea</scientific_name>
1881                                   <common_name>Freshwater planarian flatworm</common_name>
1882                                   <rank>species</rank>
1883                                   <uri>http://www.astrobio.net/images/galleryimages_images/Gallery_Image_8136.jpg</uri>
1884                                 </taxonomy>
1885                               </clade>
1886                             </clade>
1887                           </clade>
1888                         </clade>
1889                       </clade>
1890                       <clade>
1891                         <name>Cnidaria</name>
1892                         <taxonomy>
1893                           <id provider="uniprot">6073</id>
1894                           <scientific_name>Cnidaria</scientific_name>
1895                           <rank>phylum</rank>
1896                         </taxonomy>
1897                         <clade>
1898                           <taxonomy>
1899                             <id provider="uniprot">6102</id>
1900                             <scientific_name>Hexacorallia</scientific_name>
1901                             <synonym>Ceriantipatharia</synonym>
1902                             <synonym>Zoantharia</synonym>
1903                             <rank>subclass</rank>
1904                           </taxonomy>
1905                           <clade>
1906                             <taxonomy>
1907                               <id provider="uniprot">70779</id>
1908                               <code>ACRDI</code>
1909                               <scientific_name>Acropora digitifera</scientific_name>
1910                               <common_name>Staghorn coral</common_name>
1911                               <rank>species</rank>
1912                               <uri>http://www.botany.hawaii.edu/basch/uhnpscesu/htms/NPSAcorl/images/acropori/acrdigitif7.jpg</uri>
1913                             </taxonomy>
1914                           </clade>
1915                           <clade>
1916                             <taxonomy>
1917                               <id provider="uniprot">45351</id>
1918                               <code>NEMVE</code>
1919                               <scientific_name>Nematostella vectensis</scientific_name>
1920                               <common_name>Starlet sea anemone</common_name>
1921                               <rank>species</rank>
1922                               <uri>http://genome.jgi-psf.org/Nemve1/Nematostellapolyp.jpg</uri>
1923                             </taxonomy>
1924                           </clade>
1925                         </clade>
1926                         <clade>
1927                           <taxonomy>
1928                             <id provider="uniprot">6085</id>
1929                             <code>HMAXX</code>
1930                             <scientific_name>Hydra magnipapillata</scientific_name>
1931                             <authority>Ito, 1947</authority>
1932                             <rank>species</rank>
1933                             <uri>http://www.ncbi.nlm.nih.gov/UniGene/IMG/6085.gif</uri>
1934                           </taxonomy>
1935                         </clade>
1936                       </clade>
1937                     </clade>
1938                     <clade>
1939                       <taxonomy>
1940                         <id provider="uniprot">10228</id>
1941                         <code>TRIAD</code>
1942                         <scientific_name>Trichoplax adhaerens</scientific_name>
1943                         <synonym>Trichoplax reptans</synonym>
1944                         <rank>species</rank>
1945                         <uri>http://genome.jgi-psf.org/Triad1/placozoan_signorovitch.jpg</uri>
1946                       </taxonomy>
1947                       <reference doi="10.1073/pnas.0602076103">
1948                       </reference>
1949                     </clade>
1950                   </clade>
1951                   <clade>
1952                     <taxonomy>
1953                       <id provider="uniprot">27923</id>
1954                       <code>MNELE</code>
1955                       <scientific_name>Mnemiopsis leidyi</scientific_name>
1956                       <authority>A. gassiz, 1865</authority>
1957                       <common_name>Sea walnut</common_name>
1958                       <rank>species</rank>
1959                       <uri>http://images.marinespecies.org/resized/12797_mnemiopsis-leidyi.jpg</uri>
1960                       <uri>http://i.livescience.com/images/i/000/014/544/original/mnemiopsis-leidyi-jellyfish-101014-02.jpg</uri>
1961                     </taxonomy>
1962                   </clade>
1963                   <clade>
1964                     <taxonomy>
1965                       <id provider="uniprot">400682</id>
1966                       <code>AMPQE</code>
1967                       <scientific_name>Amphimedon queenslandica</scientific_name>
1968                       <authority>Hooper &amp; Van Soest, 2006</authority>
1969                       <common_name>Sponge</common_name>
1970                       <synonym>Reniera sp. JGI-2005</synonym>
1971                       <rank>species</rank>
1972                       <uri>http://images.marinespecies.org/resized/46694_amphimedon-queenslandica.jpg</uri>
1973                     </taxonomy>
1974                   </clade>
1975                 </clade>
1976                 <clade>
1977                   <taxonomy>
1978                     <id provider="uniprot">81524</id>
1979                     <scientific_name>Codonosigidae</scientific_name>
1980                     <rank>family</rank>
1981                   </taxonomy>
1982                   <clade>
1983                     <taxonomy>
1984                       <id provider="uniprot">81824</id>
1985                       <code>MONBE</code>
1986                       <scientific_name>Monosiga brevicollis</scientific_name>
1987                       <common_name>Choanoflagellate</common_name>
1988                       <rank>species</rank>
1989                       <uri>http://genome.jgi-psf.org/Monbr1/Monosiga_1.jpg</uri>
1990                     </taxonomy>
1991                   </clade>
1992                   <clade>
1993                     <taxonomy>
1994                       <id provider="uniprot">946362</id>
1995                       <code>SALS5</code>
1996                       <scientific_name>Salpingoeca rosetta</scientific_name>
1997                       <synonym>Proterospongia sp. ATCC 50818</synonym>
1998                       <synonym>Salpingoeca sp. ATCC 50818</synonym>
1999                       <rank>species</rank>
2000                       <uri>http://cfb.unh.edu/phycokey/Choices/Amoebae_Flagellates_Ciliates/Choanoflagellates/SALPINGOECA/salpingoeca_02_300x240_Kalle%20Olli_botany.ut.ee.jpg</uri>
2001                     </taxonomy>
2002                   </clade>
2003                 </clade>
2004               </clade>
2005               <clade>
2006                 <name>Ichthyophonida &amp; Filasterea</name>
2007                 <clade>
2008                   <taxonomy>
2009                     <id provider="uniprot">198625</id>
2010                     <scientific_name>Ichthyophonida</scientific_name>
2011                     <rank>order</rank>
2012                   </taxonomy>
2013                   <clade>
2014                     <taxonomy>
2015                       <id provider="uniprot">4881</id>
2016                       <code>AMOPA</code>
2017                       <scientific_name>Amoebidium parasiticum</scientific_name>
2018                       <rank>species</rank>
2019                       <uri>http://www.nhm.ku.edu/~fungi/Ilustgenera/amoebi.jpg</uri>
2020                     </taxonomy>
2021                   </clade>
2022                   <clade>
2023                     <taxonomy>
2024                       <id provider="uniprot">72019</id>
2025                       <code>SARXX</code>
2026                       <scientific_name>Sphaeroforma arctica</scientific_name>
2027                       <rank>species</rank>
2028                       <uri>http://www.sciencedirect.com/cache/MiamiImageURL/1-s2.0-S0168952507000236-gr2.jpg</uri>
2029                     </taxonomy>
2030                   </clade>
2031                 </clade>
2032                 <clade>
2033                   <taxonomy>
2034                     <scientific_name>Filasterea</scientific_name>
2035                   </taxonomy>
2036                   <reference doi="10.1371/journal.pone.0002098">
2037                   </reference>
2038                   <reference>
2039                   </reference>
2040                   <clade>
2041                     <taxonomy>
2042                       <id provider="uniprot">595528</id>
2043                       <code>CAPO3</code>
2044                       <scientific_name>Capsaspora owczarzaki (strain ATCC 30864)</scientific_name>
2045                       <uri>http://www.berfrois.com/wp-content/uploads/2011/03/Capsaspora_owczarzaki.jpg</uri>
2046                     </taxonomy>
2047                   </clade>
2048                   <clade>
2049                     <taxonomy>
2050                       <id provider="uniprot">134558</id>
2051                       <scientific_name>Ministeria vibrans</scientific_name>
2052                       <rank>species</rank>
2053                       <uri>http://ars.els-cdn.com/content/image/1-s2.0-S0959437X03001382-gr2.jpg</uri>
2054                     </taxonomy>
2055                   </clade>
2056                 </clade>
2057               </clade>
2058             </clade>
2059             <clade>
2060               <taxonomy>
2061                 <scientific_name>Holomycota</scientific_name>
2062                 <synonym>Nucletmycea</synonym>
2063               </taxonomy>
2064               <clade>
2065                 <taxonomy>
2066                   <id provider="uniprot">4751</id>
2067                   <scientific_name>Fungi</scientific_name>
2068                   <rank>kingdom</rank>
2069                 </taxonomy>
2070                 <clade>
2071                   <name>Dikarya &amp; Mucoromycotina &amp; Kickxellomycotina &amp; Blastocladiomycota &amp; Chytridiomycota &amp; Neocallimastigomycota</name>
2072                   <clade>
2073                     <name>Dikarya &amp; Mucoromycotina &amp; Kickxellomycotina &amp; Blastocladiomycota &amp; Chytridiomycota</name>
2074                     <clade>
2075                       <name>Dikarya &amp; Mucoromycotina &amp; Kickxellomycotina &amp; Blastocladiomycota</name>
2076                       <clade>
2077                         <name>Dikarya &amp; Mucoromycotina &amp; Kickxellomycotina</name>
2078                         <clade>
2079                           <name>Dikarya &amp; Mucoromycotina</name>
2080                           <clade>
2081                             <taxonomy>
2082                               <id provider="uniprot">451864</id>
2083                               <scientific_name>Dikarya</scientific_name>
2084                               <rank>subkingdom</rank>
2085                             </taxonomy>
2086                             <reference doi="10.1038/nature05110">
2087                             </reference>
2088                             <reference>
2089                             </reference>
2090                             <clade>
2091                               <taxonomy>
2092                                 <id provider="uniprot">4890</id>
2093                                 <scientific_name>Ascomycota</scientific_name>
2094                                 <rank>phylum</rank>
2095                               </taxonomy>
2096                               <clade>
2097                                 <name>Pezizomycotina &amp; Saccharomycetales</name>
2098                                 <clade>
2099                                   <taxonomy>
2100                                     <id provider="uniprot">147538</id>
2101                                     <scientific_name>Pezizomycotina</scientific_name>
2102                                     <synonym>Euascomycota</synonym>
2103                                     <rank>subphylum</rank>
2104                                   </taxonomy>
2105                                   <reference doi="0.3852/mycologia.98.6.1018">
2106                                     <desc>A five-gene phylogeny of Pezizomycotina</desc>
2107                                   </reference>
2108                                   <reference>
2109                                   </reference>
2110                                   <clade>
2111                                     <taxonomy>
2112                                       <id provider="uniprot">716546</id>
2113                                       <scientific_name>Leotiomyceta</scientific_name>
2114                                     </taxonomy>
2115                                     <clade>
2116                                       <name>Sordariomyceta &amp; Dothideomycetes &amp; Trichocomaceae &amp; Lecanoromycetes</name>
2117                                       <clade>
2118                                         <name>Sordariomyceta &amp; Dothideomycetes &amp; Lecanoromycetes</name>
2119                                         <clade>
2120                                           <name>Sordariomyceta &amp; Lecanoromycetes</name>
2121                                           <clade>
2122                                             <taxonomy>
2123                                               <id provider="uniprot">715989</id>
2124                                               <scientific_name>Sordariomyceta</scientific_name>
2125                                             </taxonomy>
2126                                             <clade>
2127                                               <taxonomy>
2128                                                 <id provider="uniprot">147550</id>
2129                                                 <scientific_name>Sordariomycetes</scientific_name>
2130                                                 <rank>class</rank>
2131                                               </taxonomy>
2132                                               <clade>
2133                                                 <name>Magnaporthales &amp; Hypocreales</name>
2134                                                 <clade>
2135                                                   <taxonomy>
2136                                                     <id provider="uniprot">5125</id>
2137                                                     <scientific_name>Hypocreales</scientific_name>
2138                                                     <rank>order</rank>
2139                                                   </taxonomy>
2140                                                   <clade>
2141                                                     <taxonomy>
2142                                                       <id provider="uniprot">398408</id>
2143                                                       <code>AALXX</code>
2144                                                       <scientific_name>Acremonium alcalophilum</scientific_name>
2145                                                       <rank>species</rank>
2146                                                       <uri>http://genome.jgi-psf.org/public/Acral1_c3a/Acral1.jpg</uri>
2147                                                     </taxonomy>
2148                                                   </clade>
2149                                                   <clade>
2150                                                     <taxonomy>
2151                                                       <id provider="uniprot">5518</id>
2152                                                       <code>GIBZE</code>
2153                                                       <scientific_name>Gibberella zeae</scientific_name>
2154                                                       <common_name>Wheat head blight fungus</common_name>
2155                                                       <synonym>Fusarium graminearum</synonym>
2156                                                       <rank>species</rank>
2157                                                       <uri>http://www.apsnet.org/publications/apsnetfeatures/PublishingImages/1999%20Features/Fusarium02sm.jpg</uri>
2158                                                     </taxonomy>
2159                                                   </clade>
2160                                                   <clade>
2161                                                     <taxonomy>
2162                                                       <id provider="uniprot">29875</id>
2163                                                       <code>HYPVI</code>
2164                                                       <scientific_name>Hypocrea virens</scientific_name>
2165                                                       <common_name>Gliocladium virens</common_name>
2166                                                       <synonym>Trichoderma virens</synonym>
2167                                                       <synonym>Gliocladium flavofuscum</synonym>
2168                                                       <rank>species</rank>
2169                                                       <uri>http://www.ars.usda.gov/images/docs/10920_11114/Stroma1.jpg</uri>
2170                                                     </taxonomy>
2171                                                   </clade>
2172                                                 </clade>
2173                                                 <clade>
2174                                                   <taxonomy>
2175                                                     <id provider="uniprot">148305</id>
2176                                                     <code>MAGGR</code>
2177                                                     <scientific_name>Magnaporthe grisea</scientific_name>
2178                                                     <common_name>Rice blast fungus</common_name>
2179                                                     <synonym>Pyricularia grisea</synonym>
2180                                                     <rank>species</rank>
2181                                                     <uri>http://www.forestryimages.org/images/768x512/5369002.jpg</uri>
2182                                                   </taxonomy>
2183                                                 </clade>
2184                                               </clade>
2185                                               <clade>
2186                                                 <taxonomy>
2187                                                   <id provider="uniprot">5139</id>
2188                                                   <scientific_name>Sordariales</scientific_name>
2189                                                   <rank>order</rank>
2190                                                 </taxonomy>
2191                                                 <clade>
2192                                                   <taxonomy>
2193                                                     <id provider="uniprot">35718</id>
2194                                                     <scientific_name>Chaetomiaceae</scientific_name>
2195                                                     <rank>family</rank>
2196                                                   </taxonomy>
2197                                                   <clade>
2198                                                     <taxonomy>
2199                                                       <id provider="uniprot">35719</id>
2200                                                       <scientific_name>Thielavia</scientific_name>
2201                                                       <rank>genus</rank>
2202                                                     </taxonomy>
2203                                                     <clade>
2204                                                       <taxonomy>
2205                                                         <id provider="uniprot">573729</id>
2206                                                         <code>THIHA</code>
2207                                                         <scientific_name>Thielavia heterothallica (strain ATCC 42464 / BCRC 31852 / DSM 1799)</scientific_name>
2208                                                         <authority>(Apinis) Oorschot 1977</authority>
2209                                                         <synonym>Sporotrichum thermophilum</synonym>
2210                                                         <synonym>Myceliophthora thermophila</synonym>
2211                                                         <rank>species</rank>
2212                                                         <uri>http://genome.jgi-psf.org/public/Spoth2/Spoth0.jpg</uri>
2213                                                       </taxonomy>
2214                                                     </clade>
2215                                                     <clade>
2216                                                       <taxonomy>
2217                                                         <id provider="uniprot">578455</id>
2218                                                         <code>THITE</code>
2219                                                         <scientific_name>Thielavia terrestris (strain ATCC 38088 / NRRL 8126)</scientific_name>
2220                                                         <synonym>Acremonium alabamense</synonym>
2221                                                         <synonym>Thielavia terrestris NRRL 8126</synonym>
2222                                                         <uri>http://genome.jgi-psf.org/public/Thite2/Thite1.jpg</uri>
2223                                                       </taxonomy>
2224                                                     </clade>
2225                                                   </clade>
2226                                                   <clade>
2227                                                     <taxonomy>
2228                                                       <id provider="eol">1029505</id>
2229                                                       <code>CHAGB</code>
2230                                                       <scientific_name>Chaetomium globosum</scientific_name>
2231                                                       <authority>Kunze 1817</authority>
2232                                                       <common_name>Soil fungus</common_name>
2233                                                       <rank>species</rank>
2234                                                     </taxonomy>
2235                                                   </clade>
2236                                                 </clade>
2237                                                 <clade>
2238                                                   <taxonomy>
2239                                                     <id provider="uniprot">5141</id>
2240                                                     <code>NEUCR</code>
2241                                                     <scientific_name>Neurospora crassa</scientific_name>
2242                                                     <rank>species</rank>
2243                                                   </taxonomy>
2244                                                 </clade>
2245                                               </clade>
2246                                             </clade>
2247                                             <clade>
2248                                               <taxonomy>
2249                                                 <id provider="uniprot">147548</id>
2250                                                 <scientific_name>Leotiomycetes</scientific_name>
2251                                                 <rank>class</rank>
2252                                               </taxonomy>
2253                                               <clade>
2254                                                 <taxonomy>
2255                                                   <id provider="uniprot">28983</id>
2256                                                   <scientific_name>Sclerotiniaceae</scientific_name>
2257                                                   <rank>family</rank>
2258                                                 </taxonomy>
2259                                                 <clade>
2260                                                   <taxonomy>
2261                                                     <id provider="uniprot">40559</id>
2262                                                     <code>BOTFU</code>
2263                                                     <scientific_name>Botryotinia fuckeliana</scientific_name>
2264                                                     <common_name>Noble rot fungus</common_name>
2265                                                     <synonym>Botrytis cinerea</synonym>
2266                                                     <rank>species</rank>
2267                                                   </taxonomy>
2268                                                 </clade>
2269                                                 <clade>
2270                                                   <taxonomy>
2271                                                     <id provider="uniprot">5180</id>
2272                                                     <code>SCLSC</code>
2273                                                     <scientific_name>Sclerotinia sclerotiorum</scientific_name>
2274                                                     <common_name>White mold</common_name>
2275                                                     <synonym>Whetzelinia sclerotiorum</synonym>
2276                                                     <rank>species</rank>
2277                                                   </taxonomy>
2278                                                 </clade>
2279                                               </clade>
2280                                               <clade>
2281                                                 <taxonomy>
2282                                                   <id provider="uniprot">78148</id>
2283                                                   <scientific_name>Oidiodendron maius</scientific_name>
2284                                                   <rank>species</rank>
2285                                                 </taxonomy>
2286                                               </clade>
2287                                             </clade>
2288                                           </clade>
2289                                           <clade>
2290                                             <taxonomy>
2291                                               <id provider="uniprot">388435</id>
2292                                               <scientific_name>Lecanoromycetidae</scientific_name>
2293                                               <rank>subclass</rank>
2294                                             </taxonomy>
2295                                             <clade>
2296                                               <taxonomy>
2297                                                 <id provider="uniprot">27339</id>
2298                                                 <scientific_name>Cladonia grayi</scientific_name>
2299                                                 <synonym>Cladonia grayi Merr</synonym>
2300                                                 <rank>species</rank>
2301                                                 <uri>http://upload.wikimedia.org/wikipedia/commons/b/b6/Cladonia_grayi-11.jpg</uri>
2302                                               </taxonomy>
2303                                             </clade>
2304                                             <clade>
2305                                               <taxonomy>
2306                                                 <id provider="uniprot">107463</id>
2307                                                 <scientific_name>Xanthoria parietina</scientific_name>
2308                                                 <rank>species</rank>
2309                                                 <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/7/70/Xanthoria_parietina_%2806_03_31%29.jpg/800px-Xanthoria_parietina_%2806_03_31%29.jpg</uri>
2310                                               </taxonomy>
2311                                             </clade>
2312                                           </clade>
2313                                         </clade>
2314                                         <clade>
2315                                           <taxonomy>
2316                                             <id provider="uniprot">147541</id>
2317                                             <scientific_name>Dothideomycetes</scientific_name>
2318                                             <rank>class</rank>
2319                                           </taxonomy>
2320                                           <reference doi="10.3114/sim.2009.64.01">
2321                                             <desc>A class-wide phylogenetic assessment of Dothideomycetes</desc>
2322                                           </reference>
2323                                           <clade>
2324                                             <taxonomy>
2325                                               <id provider="uniprot">134362</id>
2326                                               <scientific_name>Capnodiales</scientific_name>
2327                                               <rank>order</rank>
2328                                             </taxonomy>
2329                                             <clade>
2330                                               <taxonomy>
2331                                                 <id provider="uniprot">41254</id>
2332                                                 <scientific_name>Mycosphaerella</scientific_name>
2333                                                 <rank>genus</rank>
2334                                               </taxonomy>
2335                                               <clade>
2336                                                 <taxonomy>
2337                                                   <id provider="uniprot">83344</id>
2338                                                   <scientific_name>Mycosphaerella fijiensis</scientific_name>
2339                                                   <rank>species</rank>
2340                                                 </taxonomy>
2341                                               </clade>
2342                                               <clade>
2343                                                 <taxonomy>
2344                                                   <id provider="uniprot">54734</id>
2345                                                   <code>MYCGR</code>
2346                                                   <scientific_name>Mycosphaerella graminicola</scientific_name>
2347                                                   <common_name>Speckled leaf blotch fungus</common_name>
2348                                                   <synonym>Septoria tritici</synonym>
2349                                                   <rank>species</rank>
2350                                                 </taxonomy>
2351                                               </clade>
2352                                               <clade>
2353                                                 <taxonomy>
2354                                                   <id provider="uniprot">64363</id>
2355                                                   <code>MYCPJ</code>
2356                                                   <scientific_name>Mycosphaerella pini</scientific_name>
2357                                                   <common_name>Red band needle blight disease fungus</common_name>
2358                                                   <synonym>Dothistroma septosporum</synonym>
2359                                                   <synonym>Dothistroma pini</synonym>
2360                                                   <rank>species</rank>
2361                                                 </taxonomy>
2362                                               </clade>
2363                                               <clade>
2364                                                 <taxonomy>
2365                                                   <id provider="uniprot">692275</id>
2366                                                   <code>MPSXX</code>
2367                                                   <scientific_name>Mycosphaerella populorum SO2202</scientific_name>
2368                                                   <synonym>Septoria musiva SO2202</synonym>
2369                                                   <uri>http://genome.jgi-psf.org/public/Sepmu1/Septoria-musiva-colony-abundantly-sporulating-2.jpg</uri>
2370                                                 </taxonomy>
2371                                               </clade>
2372                                             </clade>
2373                                             <clade>
2374                                               <taxonomy>
2375                                                 <id provider="uniprot">430998</id>
2376                                                 <code>BCOXX</code>
2377                                                 <scientific_name>Baudoinia compniacensis</scientific_name>
2378                                                 <rank>species</rank>
2379                                                 <uri>http://www.botanicalgarden.ubc.ca/potd/images/2011/baudoinia-compniacensis2.jpg</uri>
2380                                               </taxonomy>
2381                                             </clade>
2382                                           </clade>
2383                                           <clade>
2384                                             <taxonomy>
2385                                               <id provider="uniprot">715340</id>
2386                                               <scientific_name>Pleosporineae</scientific_name>
2387                                               <rank>suborder</rank>
2388                                             </taxonomy>
2389                                             <clade>
2390                                               <taxonomy>
2391                                                 <id provider="uniprot">28556</id>
2392                                                 <scientific_name>Pleosporaceae</scientific_name>
2393                                                 <rank>family</rank>
2394                                               </taxonomy>
2395                                               <clade>
2396                                                 <name>Cochliobolus &amp; Setosphaeria</name>
2397                                                 <clade>
2398                                                   <taxonomy>
2399                                                     <id provider="uniprot">5015</id>
2400                                                     <scientific_name>Cochliobolus</scientific_name>
2401                                                     <rank>genus</rank>
2402                                                   </taxonomy>
2403                                                   <clade>
2404                                                     <taxonomy>
2405                                                       <id provider="uniprot">5016</id>
2406                                                       <code>COCHE</code>
2407                                                       <scientific_name>Cochliobolus heterostrophus</scientific_name>
2408                                                       <synonym>Drechslera maydis</synonym>
2409                                                       <rank>species</rank>
2410                                                     </taxonomy>
2411                                                   </clade>
2412                                                   <clade>
2413                                                     <taxonomy>
2414                                                       <id provider="uniprot">45130</id>
2415                                                       <code>COCSA</code>
2416                                                       <scientific_name>Cochliobolus sativus</scientific_name>
2417                                                       <synonym>Bipolaris sorokiniana</synonym>
2418                                                       <rank>species</rank>
2419                                                       <uri>http://www.plantmanagementnetwork.org/pub/php/diagnosticguide/2003/rootrot/image/mathre6sm.jpg</uri>
2420                                                     </taxonomy>
2421                                                   </clade>
2422                                                 </clade>
2423                                                 <clade>
2424                                                   <taxonomy>
2425                                                     <id provider="uniprot">93612</id>
2426                                                     <code>SETTU</code>
2427                                                     <scientific_name>Setosphaeria turcica</scientific_name>
2428                                                     <authority>(Luttr.) K.J. Leonard &amp; Suggs, (1974)</authority>
2429                                                     <common_name>Northern corn leaf blight disease fungus</common_name>
2430                                                     <synonym>Exserohilum turcicum</synonym>
2431                                                     <synonym>Helminthosporium turcicum</synonym>
2432                                                     <rank>species</rank>
2433                                                   </taxonomy>
2434                                                 </clade>
2435                                               </clade>
2436                                               <clade>
2437                                                 <taxonomy>
2438                                                   <id provider="uniprot">426418</id>
2439                                                   <code>PYRTR</code>
2440                                                   <scientific_name>Pyrenophora tritici-repentis (strain Pt-1C-BFP)</scientific_name>
2441                                                   <common_name>Wheat tan spot fungus</common_name>
2442                                                   <synonym>Drechslera tritici-repentis</synonym>
2443                                                 </taxonomy>
2444                                               </clade>
2445                                             </clade>
2446                                             <clade>
2447                                               <taxonomy>
2448                                                 <id provider="uniprot">13684</id>
2449                                                 <code>PHANO</code>
2450                                                 <scientific_name>Phaeosphaeria nodorum</scientific_name>
2451                                                 <common_name>Glume blotch fungus</common_name>
2452                                                 <synonym>Septoria nodorum</synonym>
2453                                                 <rank>species</rank>
2454                                               </taxonomy>
2455                                             </clade>
2456                                           </clade>
2457                                         </clade>
2458                                       </clade>
2459                                       <clade>
2460                                         <taxonomy>
2461                                           <id provider="uniprot">28568</id>
2462                                           <scientific_name>Trichocomaceae</scientific_name>
2463                                           <rank>family</rank>
2464                                         </taxonomy>
2465                                         <clade>
2466                                           <taxonomy>
2467                                             <id provider="uniprot">5052</id>
2468                                             <scientific_name>Aspergillus</scientific_name>
2469                                             <rank>genus</rank>
2470                                           </taxonomy>
2471                                           <clade>
2472                                             <taxonomy>
2473                                               <scientific_name>Aspergillus flavus</scientific_name>
2474                                             </taxonomy>
2475                                             <clade>
2476                                               <taxonomy>
2477                                                 <id provider="uniprot">5059</id>
2478                                                 <code>ASPFL</code>
2479                                                 <scientific_name>Aspergillus flavus</scientific_name>
2480                                                 <authority>Link 1809</authority>
2481                                                 <synonym>Petromyces flavus</synonym>
2482                                                 <rank>species</rank>
2483                                                 <uri>http://www.schoolproject2.ewebsite.com/img/original/21/aspergillus-flavus.jpg</uri>
2484                                               </taxonomy>
2485                                             </clade>
2486                                             <clade>
2487                                               <taxonomy>
2488                                                 <id provider="uniprot">332952</id>
2489                                                 <code>ASPFN</code>
2490                                                 <scientific_name>Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC 167)</scientific_name>
2491                                                 <synonym>Aspergillus flavus NRRL3357</synonym>
2492                                               </taxonomy>
2493                                             </clade>
2494                                           </clade>
2495                                           <clade>
2496                                             <taxonomy>
2497                                               <id provider="uniprot">5061</id>
2498                                               <code>ASPNG</code>
2499                                               <scientific_name>Aspergillus niger</scientific_name>
2500                                               <rank>species</rank>
2501                                             </taxonomy>
2502                                           </clade>
2503                                         </clade>
2504                                         <clade>
2505                                           <name>Neosartorya &amp; Emericella</name>
2506                                           <clade>
2507                                             <taxonomy>
2508                                               <id provider="eol">195546</id>
2509                                               <code>EMENI</code>
2510                                               <scientific_name>Emericella nidulans</scientific_name>
2511                                               <authority>Vuill. 1927</authority>
2512                                               <synonym>Aspergillus nidulans</synonym>
2513                                               <rank>species</rank>
2514                                             </taxonomy>
2515                                           </clade>
2516                                           <clade>
2517                                             <taxonomy>
2518                                               <id provider="uniprot">331117</id>
2519                                               <code>NEOFI</code>
2520                                               <scientific_name>Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181)</scientific_name>
2521                                               <synonym>Aspergillus fischerianus</synonym>
2522                                             </taxonomy>
2523                                           </clade>
2524                                         </clade>
2525                                       </clade>
2526                                     </clade>
2527                                     <clade>
2528                                       <taxonomy>
2529                                         <id provider="uniprot">33183</id>
2530                                         <scientific_name>Onygenales</scientific_name>
2531                                         <rank>order</rank>
2532                                       </taxonomy>
2533                                       <clade>
2534                                         <taxonomy>
2535                                           <id provider="uniprot">5501</id>
2536                                           <code>COCIM</code>
2537                                           <scientific_name>Coccidioides immitis</scientific_name>
2538                                           <common_name>Valley fever fungus</common_name>
2539                                           <rank>species</rank>
2540                                         </taxonomy>
2541                                       </clade>
2542                                       <clade>
2543                                         <taxonomy>
2544                                           <id provider="uniprot">336963</id>
2545                                           <code>UNCRE</code>
2546                                           <scientific_name>Uncinocarpus reesii (strain UAMH 1704)</scientific_name>
2547                                         </taxonomy>
2548                                       </clade>
2549                                     </clade>
2550                                   </clade>
2551                                   <clade>
2552                                     <taxonomy>
2553                                       <id provider="uniprot">656061</id>
2554                                       <code>TUBMM</code>
2555                                       <scientific_name>Tuber melanosporum (strain Mel28)</scientific_name>
2556                                       <common_name>Perigord black truffle</common_name>
2557                                       <synonym>Tuber melanosporum Mel28</synonym>
2558                                       <uri>http://www.trufamania.com/trufas/Tuber%20melanosporum02.jpg</uri>
2559                                     </taxonomy>
2560                                   </clade>
2561                                 </clade>
2562                                 <clade>
2563                                   <taxonomy>
2564                                     <id provider="uniprot">4892</id>
2565                                     <scientific_name>Saccharomycetales</scientific_name>
2566                                     <common_name>budding yeasts</common_name>
2567                                     <rank>order</rank>
2568                                   </taxonomy>
2569                                   <clade>
2570                                     <name>Candida &amp; Debaryomyces &amp; Saccharomycetacea</name>
2571                                     <clade>
2572                                       <taxonomy>
2573                                         <id provider="uniprot">4893</id>
2574                                         <scientific_name>Saccharomycetaceae</scientific_name>
2575                                         <rank>family</rank>
2576                                       </taxonomy>
2577                                       <clade>
2578                                         <name>Saccharomyces_Pichia</name>
2579                                         <clade>
2580                                           <name>Saccharomyces</name>
2581                                           <clade>
2582                                             <taxonomy>
2583                                               <id provider="uniprot">27288</id>
2584                                               <code>SACCA</code>
2585                                               <scientific_name>Saccharomyces castellii</scientific_name>
2586                                               <common_name>Yeast</common_name>
2587                                               <synonym>Saccharomyces castellii</synonym>
2588                                               <rank>species</rank>
2589                                             </taxonomy>
2590                                           </clade>
2591                                           <clade>
2592                                             <taxonomy>
2593                                               <id provider="uniprot">4932</id>
2594                                               <code>YEAST</code>
2595                                               <scientific_name>Saccharomyces cerevisiae</scientific_name>
2596                                               <common_name>Baker&apos;s yeast</common_name>
2597                                               <rank>species</rank>
2598                                             </taxonomy>
2599                                           </clade>
2600                                         </clade>
2601                                         <clade>
2602                                           <taxonomy>
2603                                             <id provider="uniprot">4905</id>
2604                                             <code>PICAN</code>
2605                                             <scientific_name>Pichia angusta</scientific_name>
2606                                             <common_name>Yeast</common_name>
2607                                             <synonym>Hansenula polymorpha</synonym>
2608                                             <rank>species</rank>
2609                                           </taxonomy>
2610                                         </clade>
2611                                       </clade>
2612                                       <clade>
2613                                         <name>Kluyveromyces &amp; Ashbya</name>
2614                                         <clade>
2615                                           <name>Kluyveromyces</name>
2616                                           <clade>
2617                                             <taxonomy>
2618                                               <id provider="uniprot">28985</id>
2619                                               <code>KLULA</code>
2620                                               <scientific_name>Kluyveromyces lactis</scientific_name>
2621                                               <common_name>Yeast</common_name>
2622                                               <synonym>Candida sphaerica</synonym>
2623                                               <rank>species</rank>
2624                                             </taxonomy>
2625                                           </clade>
2626                                           <clade>
2627                                             <taxonomy>
2628                                               <id provider="uniprot">4914</id>
2629                                               <code>KLUWA</code>
2630                                               <scientific_name>Kluyveromyces waltii</scientific_name>
2631                                               <common_name>Yeast</common_name>
2632                                               <rank>species</rank>
2633                                             </taxonomy>
2634                                           </clade>
2635                                         </clade>
2636                                         <clade>
2637                                           <taxonomy>
2638                                             <id provider="uniprot">33169</id>
2639                                             <code>ASHGO</code>
2640                                             <scientific_name>Ashbya gossypii</scientific_name>
2641                                             <common_name>Yeast</common_name>
2642                                             <synonym>Eremothecium gossypii</synonym>
2643                                             <rank>species</rank>
2644                                           </taxonomy>
2645                                         </clade>
2646                                       </clade>
2647                                     </clade>
2648                                     <clade>
2649                                       <name>Candida &amp; Debaryomyces</name>
2650                                       <clade>
2651                                         <taxonomy>
2652                                           <id provider="uniprot">5475</id>
2653                                           <scientific_name>Candida</scientific_name>
2654                                           <rank>genus</rank>
2655                                         </taxonomy>
2656                                         <clade>
2657                                           <taxonomy>
2658                                             <id provider="uniprot">5476</id>
2659                                             <code>CANAL</code>
2660                                             <scientific_name>Candida albicans</scientific_name>
2661                                             <common_name>Yeast</common_name>
2662                                             <rank>species</rank>
2663                                           </taxonomy>
2664                                         </clade>
2665                                         <clade>
2666                                           <taxonomy>
2667                                             <id provider="uniprot">5482</id>
2668                                             <code>CANTR</code>
2669                                             <scientific_name>Candida tropicalis</scientific_name>
2670                                             <common_name>Yeast</common_name>
2671                                             <rank>species</rank>
2672                                           </taxonomy>
2673                                         </clade>
2674                                       </clade>
2675                                       <clade>
2676                                         <taxonomy>
2677                                           <id provider="uniprot">4959</id>
2678                                           <code>DEBHA</code>
2679                                           <scientific_name>Debaryomyces hansenii</scientific_name>
2680                                           <common_name>Yeast</common_name>
2681                                           <synonym>Torulaspora hansenii</synonym>
2682                                           <rank>species</rank>
2683                                         </taxonomy>
2684                                       </clade>
2685                                     </clade>
2686                                   </clade>
2687                                   <clade>
2688                                     <taxonomy>
2689                                       <id provider="uniprot">4952</id>
2690                                       <code>YARLI</code>
2691                                       <scientific_name>Yarrowia lipolytica</scientific_name>
2692                                       <synonym>Candida lipolytica</synonym>
2693                                       <rank>species</rank>
2694                                     </taxonomy>
2695                                   </clade>
2696                                 </clade>
2697                               </clade>
2698                               <clade>
2699                                 <taxonomy>
2700                                   <id provider="uniprot">451866</id>
2701                                   <scientific_name>Taphrinomycotina</scientific_name>
2702                                   <rank>subphylum</rank>
2703                                 </taxonomy>
2704                                 <clade>
2705                                   <name>Pneumocystidomycetes &amp; Schizosaccharomycetes</name>
2706                                   <clade>
2707                                     <taxonomy>
2708                                       <id provider="uniprot">4895</id>
2709                                       <scientific_name>Schizosaccharomyces</scientific_name>
2710                                       <rank>genus</rank>
2711                                     </taxonomy>
2712                                     <clade>
2713                                       <taxonomy>
2714                                         <id provider="uniprot">4897</id>
2715                                         <code>SCHJP</code>
2716                                         <scientific_name>Schizosaccharomyces japonicus</scientific_name>
2717                                         <common_name>Fission yeast</common_name>
2718                                         <rank>species</rank>
2719                                       </taxonomy>
2720                                     </clade>
2721                                     <clade>
2722                                       <taxonomy>
2723                                         <id provider="uniprot">4899</id>
2724                                         <code>SCHOT</code>
2725                                         <scientific_name>Schizosaccharomyces octosporus</scientific_name>
2726                                         <common_name>Fission yeast</common_name>
2727                                         <rank>species</rank>
2728                                         <uri>http://www.dipbot.unict.it/sistematica/Immagini/12002.JPG</uri>
2729                                       </taxonomy>
2730                                     </clade>
2731                                     <clade>
2732                                       <taxonomy>
2733                                         <id provider="uniprot">4896</id>
2734                                         <code>SCHPO</code>
2735                                         <scientific_name>Schizosaccharomyces pombe</scientific_name>
2736                                         <common_name>Fission yeast</common_name>
2737                                         <rank>species</rank>
2738                                       </taxonomy>
2739                                     </clade>
2740                                   </clade>
2741                                   <clade>
2742                                     <taxonomy>
2743                                       <id provider="uniprot">4754</id>
2744                                       <code>PNECA</code>
2745                                       <scientific_name>Pneumocystis carinii</scientific_name>
2746                                       <rank>species</rank>
2747                                     </taxonomy>
2748                                   </clade>
2749                                 </clade>
2750                                 <clade>
2751                                   <taxonomy>
2752                                     <id provider="uniprot">5606</id>
2753                                     <scientific_name>Saitoella complicata</scientific_name>
2754                                     <rank>species</rank>
2755                                   </taxonomy>
2756                                 </clade>
2757                               </clade>
2758                             </clade>
2759                             <clade>
2760                               <taxonomy>
2761                                 <id provider="uniprot">5204</id>
2762                                 <scientific_name>Basidiomycota</scientific_name>
2763                                 <rank>phylum</rank>
2764                               </taxonomy>
2765                               <clade>
2766                                 <name>Agaricomycotina &amp; Ustilaginomycotina &amp; Pucciniomycotina</name>
2767                                 <clade>
2768                                   <name>Agaricomycotina &amp; Ustilaginomycotina</name>
2769                                   <clade>
2770                                     <taxonomy>
2771                                       <id provider="uniprot">5302</id>
2772                                       <scientific_name>Agaricomycotina</scientific_name>
2773                                     </taxonomy>
2774                                     <clade>
2775                                       <taxonomy>
2776                                         <id provider="uniprot">155619</id>
2777                                         <scientific_name>Homobasidiomycetes</scientific_name>
2778                                         <rank>class</rank>
2779                                       </taxonomy>
2780                                       <reference doi="10.1098/rspb.2002.2123">
2781                                         <desc>Evolution of complex fruiting–body morphologies in homobasidiomycetes</desc>
2782                                       </reference>
2783                                       <clade>
2784                                         <name>Agaricomycetidae &amp; Gloeophyllum &amp; Aphyllophorales</name>
2785                                         <clade>
2786                                           <name>Agaricomycetidae &amp; Gloeophyllum</name>
2787                                           <clade>
2788                                             <taxonomy>
2789                                               <id provider="uniprot">452333</id>
2790                                               <scientific_name>Agaricomycetidae</scientific_name>
2791                                               <rank>subclass</rank>
2792                                             </taxonomy>
2793                                             <clade>
2794                                               <name>Agaricales &amp; Boletales</name>
2795                                               <clade>
2796                                                 <taxonomy>
2797                                                   <id provider="uniprot">5338</id>
2798                                                   <scientific_name>Agaricales</scientific_name>
2799                                                   <rank>order</rank>
2800                                                 </taxonomy>
2801                                                 <clade>
2802                                                   <name>Agaricus &amp; Coprinopsis &amp; Laccaria &amp; Pleurotus</name>
2803                                                   <clade>
2804                                                     <name>Agaricus &amp; Coprinopsis &amp; Laccaria</name>
2805                                                     <clade>
2806                                                       <name>Agaricus &amp; Coprinopsis</name>
2807                                                       <clade>
2808                                                         <taxonomy>
2809                                                           <id provider="uniprot">597362</id>
2810                                                           <code>AGABU</code>
2811                                                           <scientific_name>Agaricus bisporus var. burnettii (strain JB137-S8 / ATCC MYA-4627 / FGSC 10392)</scientific_name>
2812                                                           <common_name>White button mushroom</common_name>
2813                                                           <synonym>Agaricus bisporus var. burnettii JB137-S8</synonym>
2814                                                           <uri>http://www.mykoweb.com/CAF/photos/Agaricus_bisporus(fs-03).jpg</uri>
2815                                                         </taxonomy>
2816                                                       </clade>
2817                                                       <clade>
2818                                                         <taxonomy>
2819                                                           <id provider="uniprot">5346</id>
2820                                                           <code>COPCI</code>
2821                                                           <scientific_name>Coprinopsis cinerea</scientific_name>
2822                                                           <common_name>Inky cap fungus</common_name>
2823                                                           <synonym>Hormographiella aspergillata</synonym>
2824                                                           <rank>species</rank>
2825                                                           <uri>http://upload.wikimedia.org/wikipedia/commons/e/e9/Coprinopsis.cinerea.-.lindsey.jpg</uri>
2826                                                         </taxonomy>
2827                                                       </clade>
2828                                                     </clade>
2829                                                     <clade>
2830                                                       <taxonomy>
2831                                                         <id provider="uniprot">29883</id>
2832                                                         <code>LACBI</code>
2833                                                         <scientific_name>Laccaria bicolor</scientific_name>
2834                                                         <common_name>Bicoloured deceiver</common_name>
2835                                                         <synonym>Laccaria laccata var. bicolor</synonym>
2836                                                         <rank>species</rank>
2837                                                         <uri>http://botit.botany.wisc.edu/toms_fungi/images/L_bicolor_NM.JPG</uri>
2838                                                       </taxonomy>
2839                                                     </clade>
2840                                                   </clade>
2841                                                   <clade>
2842                                                     <taxonomy>
2843                                                       <id provider="uniprot">206324</id>
2844                                                       <scientific_name>Gymnopus luxurians</scientific_name>
2845                                                       <rank>species</rank>
2846                                                       <uri>http://www.mushroomexpert.com/images/kuo3/gymnopus_luxurians_02.jpg</uri>
2847                                                     </taxonomy>
2848                                                   </clade>
2849                                                 </clade>
2850                                                 <clade>
2851                                                   <taxonomy>
2852                                                     <id provider="uniprot">5322</id>
2853                                                     <code>PLEOS</code>
2854                                                     <scientific_name>Pleurotus ostreatus</scientific_name>
2855                                                     <common_name>Oyster mushroom</common_name>
2856                                                     <synonym>White-rot fungus</synonym>
2857                                                     <rank>species</rank>
2858                                                     <uri>http://botit.botany.wisc.edu/toms_fungi/images/post1.jpg</uri>
2859                                                   </taxonomy>
2860                                                 </clade>
2861                                               </clade>
2862                                               <clade>
2863                                                 <taxonomy>
2864                                                   <id provider="uniprot">68889</id>
2865                                                   <scientific_name>Boletales</scientific_name>
2866                                                   <synonym>Melanogastrales</synonym>
2867                                                   <synonym>Sclerodermatales</synonym>
2868                                                   <rank>order</rank>
2869                                                 </taxonomy>
2870                                                 <clade>
2871                                                   <taxonomy>
2872                                                     <id provider="uniprot">227334</id>
2873                                                     <scientific_name>Coniophorineae</scientific_name>
2874                                                     <rank>suborder</rank>
2875                                                   </taxonomy>
2876                                                   <clade>
2877                                                     <taxonomy>
2878                                                       <id provider="uniprot">80637</id>
2879                                                       <code>CPUXX</code>
2880                                                       <scientific_name>Coniophora puteana</scientific_name>
2881                                                       <authority>Schum. ex Fries</authority>
2882                                                       <common_name>cellar fungus</common_name>
2883                                                       <rank>species</rank>
2884                                                       <uri>http://genome.jgi-psf.org/public/Conpu1/P1240066_dp.jpg</uri>
2885                                                     </taxonomy>
2886                                                   </clade>
2887                                                   <clade>
2888                                                     <taxonomy>
2889                                                       <id provider="uniprot">578457</id>
2890                                                       <code>SERL9</code>
2891                                                       <scientific_name>Serpula lacrymans var. lacrymans (strain S7.9)</scientific_name>
2892                                                       <common_name>Dry rot fungus</common_name>
2893                                                       <uri>http://www.anbg.gov.au/fungi/images/0160.jpg</uri>
2894                                                     </taxonomy>
2895                                                   </clade>
2896                                                 </clade>
2897                                                 <clade>
2898                                                   <taxonomy>
2899                                                     <id provider="uniprot">388859</id>
2900                                                     <scientific_name>Hydnomerulius pinastri</scientific_name>
2901                                                     <common_name>Spiny dry rot fungus</common_name>
2902                                                     <rank>species</rank>
2903                                                     <uri>http://genome.jgi.doe.gov/public/Hydpi1/Hydnomerulius_pinastri.jpg</uri>
2904                                                   </taxonomy>
2905                                                 </clade>
2906                                               </clade>
2907                                             </clade>
2908                                             <clade>
2909                                               <taxonomy>
2910                                                 <id provider="uniprot">202697</id>
2911                                                 <scientific_name>Jaapia argillacea</scientific_name>
2912                                                 <rank>species</rank>
2913                                                 <uri>http://mycor.nancy.inra.fr/blogGenomes/wp-content/uploads/2012/08/IMG_21261.jpg</uri>
2914                                               </taxonomy>
2915                                             </clade>
2916                                           </clade>
2917                                           <clade>
2918                                             <taxonomy>
2919                                               <id provider="uniprot">104355</id>
2920                                               <code>GLOTR</code>
2921                                               <scientific_name>Gloeophyllum trabeum</scientific_name>
2922                                               <common_name>Brown rot fungus</common_name>
2923                                               <rank>species</rank>
2924                                               <uri>http://www.commanster.eu/commanster/Mushrooms/Basidio/SpBasidio/Gloeophyllum.trabeum.jpg</uri>
2925                                             </taxonomy>
2926                                           </clade>
2927                                         </clade>
2928                                         <clade>
2929                                           <taxonomy>
2930                                             <id provider="uniprot">5303</id>
2931                                             <scientific_name>Aphyllophorales</scientific_name>
2932                                             <authority>Gäum. (1926)</authority>
2933                                             <common_name>Shelf Fungi</common_name>
2934                                             <synonym>Polyporales</synonym>
2935                                             <rank>order</rank>
2936                                           </taxonomy>
2937                                           <clade>
2938                                             <taxonomy>
2939                                               <id provider="uniprot">83233</id>
2940                                               <scientific_name>Coriolaceae</scientific_name>
2941                                               <rank>family</rank>
2942                                             </taxonomy>
2943                                             <reference doi="10.1017/S1477200005001623">
2944                                               <desc>The phylogenetic distribution of resupinate forms across the major clades of mushroom-forming fungi (Homobasidiomycetes)</desc>
2945                                             </reference>
2946                                             <reference>
2947                                             </reference>
2948                                             <reference>
2949                                             </reference>
2950                                             <clade>
2951                                               <name>Postia &amp; Fomitopsis &amp; Wolfiporia &amp; Trametes</name>
2952                                               <clade>
2953                                                 <name>Antrodia clade</name>
2954                                                 <taxonomy>
2955                                                   <common_name>Antrodia clade</common_name>
2956                                                 </taxonomy>
2957                                                 <clade>
2958                                                   <taxonomy>
2959                                                     <id provider="uniprot">40483</id>
2960                                                     <code>FPIXX</code>
2961                                                     <scientific_name>Fomitopsis pinicola</scientific_name>
2962                                                     <authority>(Swartz) P. Karsten</authority>
2963                                                     <common_name>Red banded polypore</common_name>
2964                                                     <synonym>Fomes pinicola</synonym>
2965                                                     <synonym>Boletus pinicola</synonym>
2966                                                     <rank>species</rank>
2967                                                     <uri>http://www.mykoweb.com/CAF/photos/Fomitopsis_pinicola(mgw-02).jpg</uri>
2968                                                   </taxonomy>
2969                                                 </clade>
2970                                                 <clade>
2971                                                   <taxonomy>
2972                                                     <id provider="uniprot">104341</id>
2973                                                     <code>PPLXX</code>
2974                                                     <scientific_name>Postia placenta</scientific_name>
2975                                                     <synonym>Rhodonia placenta</synonym>
2976                                                     <rank>species</rank>
2977                                                     <uri>http://www.commanster.eu/commanster/Mushrooms/Polypore/SuPolypore/Postia.placenta.jpg</uri>
2978                                                   </taxonomy>
2979                                                 </clade>
2980                                               </clade>
2981                                               <clade>
2982                                                 <name>core polyporoid clade</name>
2983                                                 <taxonomy>
2984                                                   <common_name>core polyporoid clade</common_name>
2985                                                 </taxonomy>
2986                                                 <clade>
2987                                                   <taxonomy>
2988                                                     <id provider="uniprot">5325</id>
2989                                                     <code>TRAVE</code>
2990                                                     <scientific_name>Trametes versicolor</scientific_name>
2991                                                     <authority>(L.) Lloyd 1921</authority>
2992                                                     <common_name>White-rot fungus</common_name>
2993                                                     <synonym>Coriolus versicolor</synonym>
2994                                                     <synonym>Bjerkandera versicolor</synonym>
2995                                                     <rank>species</rank>
2996                                                     <uri>http://www.mykoweb.com/CAF/photos/Trametes_versicolor(bab-1).jpg</uri>
2997                                                     <uri>http://www.mykoweb.com/CAF/photos/Trametes_versicolor(bab-2).jpg</uri>
2998                                                     <uri>http://www.mykoweb.com/CAF/photos/Trametes_versicolor(mgw-01).jpg</uri>
2999                                                   </taxonomy>
3000                                                 </clade>
3001                                                 <clade>
3002                                                   <taxonomy>
3003                                                     <id provider="uniprot">742152</id>
3004                                                     <code>WOLCO</code>
3005                                                     <scientific_name>Wolfiporia cocos (strain MD-104)</scientific_name>
3006                                                     <common_name>Brown rot fungus</common_name>
3007                                                     <synonym>Wolfiporia cocos MD-104 SS10</synonym>
3008                                                     <uri>http://genome.jgi-psf.org/public/Wolco1/W_cocos_CA-b1.jpg</uri>
3009                                                   </taxonomy>
3010                                                 </clade>
3011                                               </clade>
3012                                             </clade>
3013                                             <clade>
3014                                               <taxonomy>
3015                                                 <id provider="uniprot">42742</id>
3016                                                 <code>CERSU</code>
3017                                                 <scientific_name>Ceriporiopsis subvermispora</scientific_name>
3018                                                 <rank>species</rank>
3019                                               </taxonomy>
3020                                             </clade>
3021                                           </clade>
3022                                           <clade>
3023                                             <taxonomy>
3024                                               <id provider="uniprot">732165</id>
3025                                               <code>DICSQ</code>
3026                                               <scientific_name>Dichomitus squalens (strain LYAD-421)</scientific_name>
3027                                               <common_name>Western red white-rot fungus</common_name>
3028                                               <synonym>Dichomitus squalens LYAD-421 SS1</synonym>
3029                                               <uri>http://www.fs.fed.us/r3/resources/health/field-guide/images/large/sds-f199-large.jpg</uri>
3030                                             </taxonomy>
3031                                           </clade>
3032                                         </clade>
3033                                       </clade>
3034                                       <clade>
3035                                         <taxonomy>
3036                                           <id provider="uniprot">13563</id>
3037                                           <code>HETAN</code>
3038                                           <scientific_name>Heterobasidion annosum</scientific_name>
3039                                           <common_name>Root rot fungus</common_name>
3040                                           <rank>species</rank>
3041                                         </taxonomy>
3042                                       </clade>
3043                                     </clade>
3044                                     <clade>
3045                                       <taxonomy>
3046                                         <id provider="uniprot">5215</id>
3047                                         <scientific_name>Tremellaceae</scientific_name>
3048                                         <rank>family</rank>
3049                                       </taxonomy>
3050                                       <clade>
3051                                         <taxonomy>
3052                                           <id provider="uniprot">5207</id>
3053                                           <code>CRYNE</code>
3054                                           <scientific_name>Cryptococcus neoformans</scientific_name>
3055                                           <synonym>Filobasidiella neoformans</synonym>
3056                                           <rank>species</rank>
3057                                         </taxonomy>
3058                                       </clade>
3059                                       <clade>
3060                                         <taxonomy>
3061                                           <id provider="eol">1029985</id>
3062                                           <code>TREME</code>
3063                                           <scientific_name>Tremella mesenterica</scientific_name>
3064                                           <authority>Pers. 1800</authority>
3065                                           <common_name>Jelly fungus</common_name>
3066                                           <synonym>Yellow Brain</synonym>
3067                                           <synonym>Tremella lutescens</synonym>
3068                                           <rank>species</rank>
3069                                         </taxonomy>
3070                                       </clade>
3071                                     </clade>
3072                                   </clade>
3073                                   <clade>
3074                                     <taxonomy>
3075                                       <id provider="uniprot">452284</id>
3076                                       <scientific_name>Ustilaginomycotina</scientific_name>
3077                                       <rank>subphylum</rank>
3078                                     </taxonomy>
3079                                     <clade>
3080                                       <taxonomy>
3081                                         <id provider="uniprot">425265</id>
3082                                         <code>MALGO</code>
3083                                         <scientific_name>Malassezia globosa (strain ATCC MYA-4612 / CBS 7966)</scientific_name>
3084                                         <common_name>Dandruff-associated fungus</common_name>
3085                                       </taxonomy>
3086                                     </clade>
3087                                     <clade>
3088                                       <taxonomy>
3089                                         <id provider="uniprot">5270</id>
3090                                         <code>USTMA</code>
3091                                         <scientific_name>Ustilago maydis</scientific_name>
3092                                         <common_name>Smut fungus</common_name>
3093                                         <rank>species</rank>
3094                                       </taxonomy>
3095                                     </clade>
3096                                   </clade>
3097                                 </clade>
3098                                 <clade>
3099                                   <taxonomy>
3100                                     <id provider="uniprot">29000</id>
3101                                     <scientific_name>Pucciniomycotina</scientific_name>
3102                                     <rank>subphylum</rank>
3103                                   </taxonomy>
3104                                   <clade>
3105                                     <taxonomy>
3106                                       <id provider="uniprot">5258</id>
3107                                       <scientific_name>Pucciniales</scientific_name>
3108                                       <common_name>rusts</common_name>
3109                                       <rank>order</rank>
3110                                     </taxonomy>
3111                                     <clade>
3112                                       <taxonomy>
3113                                         <id provider="eol">156696</id>
3114                                         <code>MELLP</code>
3115                                         <scientific_name>Melampsora laricis-populina</scientific_name>
3116                                         <authority>Kleb. 1902</authority>
3117                                         <synonym>Melampsora larici-populina</synonym>
3118                                         <synonym>Melampsora laricipopulina</synonym>
3119                                         <rank>species</rank>
3120                                       </taxonomy>
3121                                     </clade>
3122                                     <clade>
3123                                       <taxonomy>
3124                                         <id provider="eol">1029947</id>
3125                                         <code>PUCGR</code>
3126                                         <scientific_name>Puccinia graminis</scientific_name>
3127                                         <authority>Pers. 1794</authority>
3128                                         <common_name>Black stem rust fungus</common_name>
3129                                         <synonym>Wheat rust</synonym>
3130                                         <rank>species</rank>
3131                                       </taxonomy>
3132                                     </clade>
3133                                   </clade>
3134                                   <clade>
3135                                     <taxonomy>
3136                                       <id provider="uniprot">89013</id>
3137                                       <scientific_name>mitosporic Sporidiobolales</scientific_name>
3138                                     </taxonomy>
3139                                     <clade>
3140                                       <taxonomy>
3141                                         <id provider="uniprot">29898</id>
3142                                         <code>RHOGR</code>
3143                                         <scientific_name>Rhodotorula graminis</scientific_name>
3144                                         <common_name>Yeast</common_name>
3145                                         <rank>species</rank>
3146                                       </taxonomy>
3147                                     </clade>
3148                                     <clade>
3149                                       <taxonomy>
3150                                         <id provider="uniprot">40563</id>
3151                                         <code>SPORO</code>
3152                                         <scientific_name>Sporobolomyces roseus</scientific_name>
3153                                         <authority>Kluyver &amp; C. B. Niel 1924</authority>
3154                                         <rank>species</rank>
3155                                       </taxonomy>
3156                                     </clade>
3157                                   </clade>
3158                                 </clade>
3159                               </clade>
3160                               <clade>
3161                                 <taxonomy>
3162                                   <id provider="uniprot">148960</id>
3163                                   <code>WALSE</code>
3164                                   <scientific_name>Wallemia sebi</scientific_name>
3165                                   <rank>species</rank>
3166                                 </taxonomy>
3167                               </clade>
3168                             </clade>
3169                           </clade>
3170                           <clade>
3171                             <taxonomy>
3172                               <id provider="uniprot">451507</id>
3173                               <scientific_name>Mucoromycotina</scientific_name>
3174                               <rank>subphylum</rank>
3175                             </taxonomy>
3176                             <clade>
3177                               <taxonomy>
3178                                 <id provider="uniprot">34489</id>
3179                                 <scientific_name>Mucoraceae</scientific_name>
3180                                 <rank>family</rank>
3181                               </taxonomy>
3182                               <clade>
3183                                 <taxonomy>
3184                                   <id provider="uniprot">36080</id>
3185                                   <code>MUCCI</code>
3186                                   <scientific_name>Mucor circinelloides</scientific_name>
3187                                   <synonym>Mucor griseo-roseus</synonym>
3188                                   <rank>species</rank>
3189                                 </taxonomy>
3190                               </clade>
3191                               <clade>
3192                                 <taxonomy>
3193                                   <id provider="uniprot">4837</id>
3194                                   <code>PHYBL</code>
3195                                   <scientific_name>Phycomyces blakesleeanus</scientific_name>
3196                                   <rank>species</rank>
3197                                 </taxonomy>
3198                               </clade>
3199                               <clade>
3200                                 <taxonomy>
3201                                   <id provider="uniprot">64495</id>
3202                                   <code>RHIOR</code>
3203                                   <scientific_name>Rhizopus oryzae</scientific_name>
3204                                   <synonym>Rhizopus delemar</synonym>
3205                                   <rank>species</rank>
3206                                 </taxonomy>
3207                               </clade>
3208                             </clade>
3209                             <clade>
3210                               <taxonomy>
3211                                 <id provider="uniprot">1069443</id>
3212                                 <code>MVNXX</code>
3213                                 <scientific_name>Mortierella verticillata NRRL 6337</scientific_name>
3214                                 <rank>species</rank>
3215                                 <uri>http://www.ual.es/GruposInv/myco-ual/galeria17/mortierella.jpg</uri>
3216                                 <uri>http://www.diark.org/img/species_pict/Mortierella_verticillata</uri>
3217                               </taxonomy>
3218                             </clade>
3219                           </clade>
3220                         </clade>
3221                         <clade>
3222                           <taxonomy>
3223                             <id provider="uniprot">61392</id>
3224                             <scientific_name>Coemansia reversa</scientific_name>
3225                             <rank>species</rank>
3226                           </taxonomy>
3227                         </clade>
3228                       </clade>
3229                       <clade>
3230                         <taxonomy>
3231                           <id provider="uniprot">28583</id>
3232                           <code>ALLMA</code>
3233                           <scientific_name>Allomyces macrogynus</scientific_name>
3234                           <rank>species</rank>
3235                         </taxonomy>
3236                       </clade>
3237                     </clade>
3238                     <clade>
3239                       <taxonomy>
3240                         <id provider="uniprot">4761</id>
3241                         <scientific_name>Chytridiomycota</scientific_name>
3242                         <common_name>chytrids</common_name>
3243                         <synonym>Mastigomycotina</synonym>
3244                         <rank>phylum</rank>
3245                       </taxonomy>
3246                       <clade>
3247                         <taxonomy>
3248                           <id provider="uniprot">451435</id>
3249                           <scientific_name>Chytridiomycetes</scientific_name>
3250                           <rank>class</rank>
3251                         </taxonomy>
3252                         <clade>
3253                           <taxonomy>
3254                             <id provider="uniprot">109871</id>
3255                             <code>BATDE</code>
3256                             <scientific_name>Batrachochytrium dendrobatidis</scientific_name>
3257                             <common_name>Frog chytrid fungus</common_name>
3258                             <rank>species</rank>
3259                           </taxonomy>
3260                         </clade>
3261                         <clade>
3262                           <taxonomy>
3263                             <id provider="uniprot">109760</id>
3264                             <code>SPIPN</code>
3265                             <scientific_name>Spizellomyces punctatus</scientific_name>
3266                             <rank>species</rank>
3267                           </taxonomy>
3268                         </clade>
3269                       </clade>
3270                       <clade>
3271                         <taxonomy>
3272                           <id provider="uniprot">1123529</id>
3273                           <code>GONPR</code>
3274                           <scientific_name>Gonapodya prolifera</scientific_name>
3275                           <authority>A. Fisch. 1892</authority>
3276                           <common_name>Aquatic fungus</common_name>
3277                           <rank>species</rank>
3278                           <uri>http://genome.jgi-psf.org/public/Ganpr1/Picture5.jpg</uri>
3279                         </taxonomy>
3280                       </clade>
3281                     </clade>
3282                   </clade>
3283                   <clade>
3284                     <taxonomy>
3285                       <id provider="uniprot">73868</id>
3286                       <code>PIRSE</code>
3287                       <scientific_name>Piromyces sp. (strain E2)</scientific_name>
3288                       <rank>species</rank>
3289                       <uri>http://www.bsu.edu/classes/ruch/msa/barr/4-17.jpg</uri>
3290                     </taxonomy>
3291                   </clade>
3292                 </clade>
3293                 <clade>
3294                   <taxonomy>
3295                     <id provider="uniprot">6033</id>
3296                     <scientific_name>Encephalitozoon</scientific_name>
3297                     <rank>genus</rank>
3298                   </taxonomy>
3299                   <clade>
3300                     <taxonomy>
3301                       <id provider="uniprot">6035</id>
3302                       <code>ENCCU</code>
3303                       <scientific_name>Encephalitozoon cuniculi (strain GB-M1)</scientific_name>
3304                       <common_name>Microsporidian parasite</common_name>
3305                       <rank>species</rank>
3306                       <uri>http://www.nature.com/modpathol/journal/v15/n5/images/3880566f7.jpg</uri>
3307                     </taxonomy>
3308                   </clade>
3309                   <clade>
3310                     <taxonomy>
3311                       <id provider="uniprot">907965</id>
3312                       <code>ENCHA</code>
3313                       <scientific_name>Encephalitozoon hellem (strain ATCC 50504)</scientific_name>
3314                       <common_name>Microsporidian parasite</common_name>
3315                       <uri>http://ruby.fgcu.edu/courses/davidb/50249/web/Encephalitozoonhellem91.jpg</uri>
3316                     </taxonomy>
3317                   </clade>
3318                 </clade>
3319               </clade>
3320               <clade>
3321                 <name>Fonticula &amp; Nucleariidae</name>
3322                 <reference doi="10.1093/molbev/msp185">
3323                 </reference>
3324                 <clade>
3325                   <taxonomy>
3326                     <id provider="uniprot">691883</id>
3327                     <scientific_name>Fonticula alba</scientific_name>
3328                     <synonym>Fonticula alba Worley, Raper &amp; Hohl. 1979</synonym>
3329                     <rank>species</rank>
3330                   </taxonomy>
3331                 </clade>
3332                 <clade>
3333                   <taxonomy>
3334                     <id provider="uniprot">154970</id>
3335                     <scientific_name>Nuclearia simplex</scientific_name>
3336                     <rank>species</rank>
3337                   </taxonomy>
3338                 </clade>
3339               </clade>
3340             </clade>
3341           </clade>
3342           <clade>
3343             <name>Amoebozoa</name>
3344             <taxonomy>
3345               <id provider="uniprot">554915</id>
3346               <scientific_name>Amoebozoa</scientific_name>
3347             </taxonomy>
3348             <clade>
3349               <name>Dictyostelium</name>
3350               <taxonomy>
3351                 <id provider="uniprot">5782</id>
3352                 <scientific_name>Dictyostelium</scientific_name>
3353                 <rank>genus</rank>
3354               </taxonomy>
3355               <clade>
3356                 <taxonomy>
3357                   <id provider="uniprot">44689</id>
3358                   <code>DICDI</code>
3359                   <scientific_name>Dictyostelium discoideum</scientific_name>
3360                   <common_name>Slime mold</common_name>
3361                   <rank>species</rank>
3362                 </taxonomy>
3363               </clade>
3364               <clade>
3365                 <taxonomy>
3366                   <id provider="uniprot">5786</id>
3367                   <code>DICPU</code>
3368                   <scientific_name>Dictyostelium purpureum</scientific_name>
3369                   <common_name>Slime mold</common_name>
3370                   <rank>species</rank>
3371                 </taxonomy>
3372               </clade>
3373             </clade>
3374             <clade>
3375               <taxonomy>
3376                 <id provider="uniprot">5759</id>
3377                 <code>ENTHI</code>
3378                 <scientific_name>Entamoeba histolytica</scientific_name>
3379                 <rank>species</rank>
3380               </taxonomy>
3381             </clade>
3382           </clade>
3383         </clade>
3384         <clade>
3385           <name>Bikonta</name>
3386           <reference doi="10.1099/ijs.0.63216-0">
3387           </reference>
3388           <clade>
3389             <name>Plants+HC+SAR megagroup</name>
3390             <clade>
3391               <name>Plants+HC</name>
3392               <clade>
3393                 <name>Archaeplastida</name>
3394                 <clade>
3395                   <taxonomy>
3396                     <id provider="uniprot">33090</id>
3397                     <scientific_name>Viridiplantae</scientific_name>
3398                     <common_name>green plants</common_name>
3399                     <rank>kingdom</rank>
3400                   </taxonomy>
3401                   <clade>
3402                     <taxonomy>
3403                       <id provider="uniprot">3193</id>
3404                       <scientific_name>Embryophyta</scientific_name>
3405                     </taxonomy>
3406                     <clade>
3407                       <taxonomy>
3408                         <id provider="uniprot">58023</id>
3409                         <scientific_name>Tracheophyta</scientific_name>
3410                       </taxonomy>
3411                       <clade>
3412                         <taxonomy>
3413                           <id provider="uniprot">3398</id>
3414                           <scientific_name>Magnoliophyta</scientific_name>
3415                           <common_name>flowering plants</common_name>
3416                           <synonym>Angiospermae</synonym>
3417                         </taxonomy>
3418                         <clade>
3419                           <taxonomy>
3420                             <id provider="uniprot">71240</id>
3421                             <scientific_name>eudicotyledons</scientific_name>
3422                           </taxonomy>
3423                           <clade>
3424                             <taxonomy>
3425                               <id provider="uniprot">91827</id>
3426                               <scientific_name>core eudicotyledons</scientific_name>
3427                             </taxonomy>
3428                             <clade>
3429                               <taxonomy>
3430                                 <id provider="uniprot">71275</id>
3431                                 <scientific_name>rosids</scientific_name>
3432                                 <rank>subclass</rank>
3433                               </taxonomy>
3434                               <clade>
3435                                 <name>fabids &amp; malvids</name>
3436                                 <clade>
3437                                   <taxonomy>
3438                                     <id provider="uniprot">91835</id>
3439                                     <scientific_name>fabids</scientific_name>
3440                                   </taxonomy>
3441                                   <clade>
3442                                     <name>Rosales &amp; Cucurbitales &amp; Fabales</name>
3443                                     <clade>
3444                                       <name>Rosales &amp; Cucurbitales</name>
3445                                       <clade>
3446                                         <taxonomy>
3447                                           <id provider="uniprot">3745</id>
3448                                           <scientific_name>Rosaceae</scientific_name>
3449                                           <rank>family</rank>
3450                                         </taxonomy>
3451                                         <clade>
3452                                           <taxonomy>
3453                                             <id provider="uniprot">57918</id>
3454                                             <code>FRAVE</code>
3455                                             <scientific_name>Fragaria vesca</scientific_name>
3456                                             <common_name>Woodland strawberry</common_name>
3457                                             <synonym>Fragaria vesca L.</synonym>
3458                                             <synonym>European strawberry</synonym>
3459                                             <synonym>alpine strawberry</synonym>
3460                                             <rank>species</rank>
3461                                             <uri>http://www.boga.ruhr-uni-bochum.de/html/Fragaria.vesca.ja6.jpg</uri>
3462                                             <uri>http://caliban.mpiz-koeln.mpg.de/thome/band3/tafel_092_small.jpg</uri>
3463                                           </taxonomy>
3464                                         </clade>
3465                                         <clade>
3466                                           <taxonomy>
3467                                             <id provider="uniprot">3760</id>
3468                                             <code>PRUPE</code>
3469                                             <scientific_name>Prunus persica</scientific_name>
3470                                             <common_name>Peach</common_name>
3471                                             <synonym>Persica vulgaris</synonym>
3472                                             <synonym>Amygdalus persica</synonym>
3473                                             <rank>species</rank>
3474                                             <uri>http://www.mezhenskyjv.narod.ru/foto_sortov/dokaz.jpg</uri>
3475                                           </taxonomy>
3476                                         </clade>
3477                                       </clade>
3478                                       <clade>
3479                                         <taxonomy>
3480                                           <id provider="uniprot">3659</id>
3481                                           <code>CUCSA</code>
3482                                           <scientific_name>Cucumis sativus</scientific_name>
3483                                           <common_name>Cucumber</common_name>
3484                                           <rank>species</rank>
3485                                         </taxonomy>
3486                                       </clade>
3487                                     </clade>
3488                                     <clade>
3489                                       <taxonomy>
3490                                         <id provider="uniprot">3814</id>
3491                                         <scientific_name>Papilionoideae</scientific_name>
3492                                         <rank>subfamily</rank>
3493                                       </taxonomy>
3494                                       <clade>
3495                                         <taxonomy>
3496                                           <id provider="uniprot">3847</id>
3497                                           <code>SOYBN</code>
3498                                           <scientific_name>Glycine max</scientific_name>
3499                                           <authority>cv. Wye</authority>
3500                                           <common_name>Soybean</common_name>
3501                                           <synonym>Glycine hispida</synonym>
3502                                           <rank>species</rank>
3503                                         </taxonomy>
3504                                       </clade>
3505                                       <clade>
3506                                         <taxonomy>
3507                                           <id provider="uniprot">3880</id>
3508                                           <code>MEDTR</code>
3509                                           <scientific_name>Medicago truncatula</scientific_name>
3510                                           <common_name>Barrel medic</common_name>
3511                                           <synonym>Medicago tribuloides</synonym>
3512                                           <rank>species</rank>
3513                                           <uri>http://crdp.ac-besancon.fr/flore/FABACEAE/photos/medicago_truncatula_30.jpg</uri>
3514                                         </taxonomy>
3515                                       </clade>
3516                                     </clade>
3517                                   </clade>
3518                                   <clade>
3519                                     <taxonomy>
3520                                       <id provider="uniprot">3646</id>
3521                                       <scientific_name>Malpighiales</scientific_name>
3522                                       <rank>order</rank>
3523                                     </taxonomy>
3524                                     <clade>
3525                                       <taxonomy>
3526                                         <id provider="uniprot">3977</id>
3527                                         <scientific_name>Euphorbiaceae</scientific_name>
3528                                         <rank>family</rank>
3529                                       </taxonomy>
3530                                       <clade>
3531                                         <taxonomy>
3532                                           <id provider="uniprot">3983</id>
3533                                           <code>MANES</code>
3534                                           <scientific_name>Manihot esculenta</scientific_name>
3535                                           <common_name>Tapioca</common_name>
3536                                           <synonym>Jatropha manihot</synonym>
3537                                           <rank>species</rank>
3538                                           <uri>http://upload.wikimedia.org/wikipedia/commons/9/99/Iwata_kenichi_cassava.jpg</uri>
3539                                         </taxonomy>
3540                                       </clade>
3541                                       <clade>
3542                                         <taxonomy>
3543                                           <id provider="uniprot">3988</id>
3544                                           <code>RICCO</code>
3545                                           <scientific_name>Ricinus communis</scientific_name>
3546                                           <common_name>Castor bean</common_name>
3547                                           <synonym>Ricinus sanguineus</synonym>
3548                                           <rank>species</rank>
3549                                           <uri>http://nmorganics.net/wp-content/uploads/2011/09/castor.jpg</uri>
3550                                         </taxonomy>
3551                                       </clade>
3552                                     </clade>
3553                                     <clade>
3554                                       <taxonomy>
3555                                         <id provider="uniprot">3694</id>
3556                                         <code>POPTR</code>
3557                                         <scientific_name>Populus trichocarpa</scientific_name>
3558                                         <common_name>Western balsam poplar</common_name>
3559                                         <synonym>Populus balsamifera subsp. trichocarpa</synonym>
3560                                         <rank>species</rank>
3561                                       </taxonomy>
3562                                     </clade>
3563                                   </clade>
3564                                 </clade>
3565                                 <clade>
3566                                   <taxonomy>
3567                                     <id provider="uniprot">91836</id>
3568                                     <scientific_name>malvids</scientific_name>
3569                                   </taxonomy>
3570                                   <clade>
3571                                     <name>Brassicales &amp; Sapindales</name>
3572                                     <clade>
3573                                       <taxonomy>
3574                                         <id provider="uniprot">3699</id>
3575                                         <scientific_name>Brassicales</scientific_name>
3576                                         <rank>order</rank>
3577                                       </taxonomy>
3578                                       <clade>
3579                                         <taxonomy>
3580                                           <id provider="uniprot">3700</id>
3581                                           <scientific_name>Brassicaceae</scientific_name>
3582                                           <rank>family</rank>
3583                                         </taxonomy>
3584                                         <clade>
3585                                           <taxonomy>
3586                                             <id provider="uniprot">3701</id>
3587                                             <scientific_name>Arabidopsis</scientific_name>
3588                                             <rank>genus</rank>
3589                                           </taxonomy>
3590                                           <clade>
3591                                             <taxonomy>
3592                                               <id provider="uniprot">59689</id>
3593                                               <code>ARALY</code>
3594                                               <scientific_name>Arabidopsis lyrata</scientific_name>
3595                                               <common_name>Lyre-leaved rock-cress</common_name>
3596                                               <rank>species</rank>
3597                                             </taxonomy>
3598                                           </clade>
3599                                           <clade>
3600                                             <taxonomy>
3601                                               <id provider="uniprot">3702</id>
3602                                               <code>ARATH</code>
3603                                               <scientific_name>Arabidopsis thaliana</scientific_name>
3604                                               <common_name>Mouse-ear cress</common_name>
3605                                               <rank>species</rank>
3606                                             </taxonomy>
3607                                           </clade>
3608                                         </clade>
3609                                         <clade>
3610                                           <taxonomy>
3611                                             <id provider="uniprot">98038</id>
3612                                             <code>THEHA</code>
3613                                             <scientific_name>Thellungiella halophila</scientific_name>
3614                                             <common_name>Salt cress</common_name>
3615                                             <rank>species</rank>
3616                                             <uri>http://mplant.oxfordjournals.org/content/2/1/3/F1.large.jpg</uri>
3617                                           </taxonomy>
3618                                         </clade>
3619                                       </clade>
3620                                       <clade>
3621                                         <taxonomy>
3622                                           <id provider="uniprot">3649</id>
3623                                           <code>CARPA</code>
3624                                           <scientific_name>Carica papaya</scientific_name>
3625                                           <common_name>Papaya</common_name>
3626                                           <rank>species</rank>
3627                                           <uri>http://www.biopix.com/photos/jko-carica-papaya-00412.jpg</uri>
3628                                           <uri>http://www.texasriviera.com/greenthumbs/papaya10.jpg</uri>
3629                                         </taxonomy>
3630                                       </clade>
3631                                     </clade>
3632                                     <clade>
3633                                       <taxonomy>
3634                                         <id provider="uniprot">2706</id>
3635                                         <scientific_name>Citrus</scientific_name>
3636                                         <rank>genus</rank>
3637                                       </taxonomy>
3638                                       <clade>
3639                                         <taxonomy>
3640                                           <id provider="uniprot">85681</id>
3641                                           <scientific_name>Citrus clementina</scientific_name>
3642                                           <synonym>Citrus clementina hort. ex Tanaka</synonym>
3643                                           <rank>species</rank>
3644                                           <uri>http://palmen-bolschetz.de/images/citrus%20clementine.jpg</uri>
3645                                         </taxonomy>
3646                                       </clade>
3647                                       <clade>
3648                                         <taxonomy>
3649                                           <id provider="uniprot">2711</id>
3650                                           <code>CITSI</code>
3651                                           <scientific_name>Citrus sinensis</scientific_name>
3652                                           <common_name>Sweet orange</common_name>
3653                                           <synonym>Citrus x sinensis</synonym>
3654                                           <synonym>Citrus aurantium var. sinensis</synonym>
3655                                           <rank>species</rank>
3656                                           <uri>http://www.west-crete.com/flowers/photos/citrus_sinensis-1.jpg</uri>
3657                                         </taxonomy>
3658                                       </clade>
3659                                     </clade>
3660                                   </clade>
3661                                   <clade>
3662                                     <taxonomy>
3663                                       <id provider="uniprot">71139</id>
3664                                       <code>EUCGR</code>
3665                                       <scientific_name>Eucalyptus grandis</scientific_name>
3666                                       <common_name>Flooded gum</common_name>
3667                                       <rank>species</rank>
3668                                       <uri>http://www.calflora.net/losangelesarboretum/images/eucalyptus_grandis.jpg</uri>
3669                                     </taxonomy>
3670                                   </clade>
3671                                 </clade>
3672                               </clade>
3673                               <clade>
3674                                 <taxonomy>
3675                                   <id provider="eol">582304</id>
3676                                   <code>VITVI</code>
3677                                   <scientific_name>Vitis vinifera</scientific_name>
3678                                   <common_name>Grape</common_name>
3679                                   <rank>species</rank>
3680                                 </taxonomy>
3681                               </clade>
3682                             </clade>
3683                             <clade>
3684                               <taxonomy>
3685                                 <id provider="uniprot">91888</id>
3686                                 <scientific_name>lamiids</scientific_name>
3687                               </taxonomy>
3688                               <clade>
3689                                 <taxonomy>
3690                                   <id provider="uniprot">4070</id>
3691                                   <scientific_name>Solanaceae</scientific_name>
3692                                   <rank>family</rank>
3693                                 </taxonomy>
3694                                 <clade>
3695                                   <taxonomy>
3696                                     <id provider="uniprot">4107</id>
3697                                     <scientific_name>Solanum</scientific_name>
3698                                     <rank>genus</rank>
3699                                   </taxonomy>
3700                                   <clade>
3701                                     <taxonomy>
3702                                       <id provider="uniprot">49274</id>
3703                                       <scientific_name>Lycopersicon</scientific_name>
3704                                       <rank>subgenus</rank>
3705                                     </taxonomy>
3706                                     <clade>
3707                                       <taxonomy>
3708                                         <id provider="uniprot">4081</id>
3709                                         <code>SOLLC</code>
3710                                         <scientific_name>Solanum lycopersicum</scientific_name>
3711                                         <common_name>Tomato</common_name>
3712                                         <synonym>Lycopersicon esculentum</synonym>
3713                                         <rank>species</rank>
3714                                         <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0905/1214.jpeg</uri>
3715                                       </taxonomy>
3716                                     </clade>
3717                                     <clade>
3718                                       <taxonomy>
3719                                         <id provider="uniprot">4084</id>
3720                                         <code>SOLPI</code>
3721                                         <scientific_name>Solanum pimpinellifolium</scientific_name>
3722                                         <common_name>Currant tomato</common_name>
3723                                         <synonym>Lycopersicon pimpinellifolium</synonym>
3724                                         <rank>species</rank>
3725                                         <uri>http://upload.wikimedia.org/wikipedia/commons/b/b8/Currant_tomato.jpg</uri>
3726                                       </taxonomy>
3727                                     </clade>
3728                                   </clade>
3729                                   <clade>
3730                                     <taxonomy>
3731                                       <id provider="uniprot">4113</id>
3732                                       <code>SOLTU</code>
3733                                       <scientific_name>Solanum tuberosum</scientific_name>
3734                                       <common_name>Potato</common_name>
3735                                       <rank>species</rank>
3736                                       <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0508/0344.jpeg</uri>
3737                                     </taxonomy>
3738                                   </clade>
3739                                 </clade>
3740                                 <clade>
3741                                   <taxonomy>
3742                                     <id provider="uniprot">4097</id>
3743                                     <code>TOBAC</code>
3744                                     <scientific_name>Nicotiana tabacum</scientific_name>
3745                                     <common_name>Common tobacco</common_name>
3746                                     <rank>species</rank>
3747                                     <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0105/2073.jpeg</uri>
3748                                   </taxonomy>
3749                                 </clade>
3750                               </clade>
3751                               <clade>
3752                                 <taxonomy>
3753                                   <id provider="uniprot">4155</id>
3754                                   <code>MIMGU</code>
3755                                   <scientific_name>Mimulus guttatus</scientific_name>
3756                                   <common_name>Yellow monkey flower</common_name>
3757                                   <synonym>Yellow monkey flower</synonym>
3758                                   <rank>species</rank>
3759                                 </taxonomy>
3760                               </clade>
3761                             </clade>
3762                           </clade>
3763                           <clade>
3764                             <taxonomy>
3765                               <id provider="uniprot">218851</id>
3766                               <code>AQUCA</code>
3767                               <scientific_name>Aquilegia caerulea</scientific_name>
3768                               <authority>E.James</authority>
3769                               <common_name>Rocky mountain columbine</common_name>
3770                               <synonym>Aquilegia coerulea</synonym>
3771                               <rank>species</rank>
3772                               <uri>http://www.wildflower.org/image_archive/320x240/PCD3618/PCD3618_IMG0033.JPG</uri>
3773                             </taxonomy>
3774                           </clade>
3775                         </clade>
3776                         <clade>
3777                           <taxonomy>
3778                             <id provider="uniprot">4447</id>
3779                             <scientific_name>Liliopsida</scientific_name>
3780                             <common_name>monocots</common_name>
3781                             <synonym>Monocotyledoneae</synonym>
3782                             <rank>class</rank>
3783                           </taxonomy>
3784                           <clade>
3785                             <taxonomy>
3786                               <id provider="uniprot">4479</id>
3787                               <scientific_name>Poaceae</scientific_name>
3788                               <common_name>grass family</common_name>
3789                               <synonym>Gramineae</synonym>
3790                               <rank>family</rank>
3791                             </taxonomy>
3792                             <clade>
3793                               <taxonomy>
3794                                 <id provider="uniprot">147369</id>
3795                                 <scientific_name>Panicoideae</scientific_name>
3796                                 <authority>Link, 1827</authority>
3797                                 <synonym>Centothecoideae</synonym>
3798                                 <rank>subfamily</rank>
3799                               </taxonomy>
3800                               <clade>
3801                                 <taxonomy>
3802                                   <id provider="uniprot">147429</id>
3803                                   <scientific_name>Andropogoneae</scientific_name>
3804                                   <authority>Dumort., 1824</authority>
3805                                   <rank>tribe</rank>
3806                                 </taxonomy>
3807                                 <clade>
3808                                   <taxonomy>
3809                                     <id provider="uniprot">4558</id>
3810                                     <code>SORBI</code>
3811                                     <scientific_name>Sorghum bicolor</scientific_name>
3812                                     <common_name>Sorghum</common_name>
3813                                     <synonym>Sorghum vulgare</synonym>
3814                                     <rank>species</rank>
3815                                   </taxonomy>
3816                                 </clade>
3817                                 <clade>
3818                                   <taxonomy>
3819                                     <id provider="uniprot">4577</id>
3820                                     <code>MAIZE</code>
3821                                     <scientific_name>Zea mays</scientific_name>
3822                                     <common_name>Maize</common_name>
3823                                     <rank>species</rank>
3824                                   </taxonomy>
3825                                 </clade>
3826                               </clade>
3827                               <clade>
3828                                 <taxonomy>
3829                                   <id provider="uniprot">147428</id>
3830                                   <scientific_name>Paniceae</scientific_name>
3831                                   <rank>tribe</rank>
3832                                 </taxonomy>
3833                                 <clade>
3834                                   <taxonomy>
3835                                     <id provider="uniprot">38727</id>
3836                                     <scientific_name>Panicum virgatum</scientific_name>
3837                                     <common_name>switchgrass</common_name>
3838                                     <rank>species</rank>
3839                                     <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/2/29/PanicumVirgatum.jpg/220px-PanicumVirgatum.jpg</uri>
3840                                   </taxonomy>
3841                                 </clade>
3842                                 <clade>
3843                                   <taxonomy>
3844                                     <id provider="uniprot">4555</id>
3845                                     <code>SETIT</code>
3846                                     <scientific_name>Setaria italica</scientific_name>
3847                                     <common_name>Foxtail millet</common_name>
3848                                     <synonym>Panicum italicum</synonym>
3849                                     <rank>species</rank>
3850                                     <uri>http://en.academic.ru/pictures/enwiki/83/Setaria_italica0.jpg</uri>
3851                                   </taxonomy>
3852                                 </clade>
3853                               </clade>
3854                             </clade>
3855                             <clade>
3856                               <taxonomy>
3857                                 <id provider="uniprot">359160</id>
3858                                 <scientific_name>BEP clade</scientific_name>
3859                               </taxonomy>
3860                               <clade>
3861                                 <taxonomy>
3862                                   <id provider="uniprot">4527</id>
3863                                   <scientific_name>Oryza</scientific_name>
3864                                   <rank>genus</rank>
3865                                 </taxonomy>
3866                                 <clade>
3867                                   <taxonomy>
3868                                     <id provider="uniprot">4530</id>
3869                                     <code>ORYSA</code>
3870                                     <scientific_name>Oryza sativa</scientific_name>
3871                                     <common_name>Rice</common_name>
3872                                     <rank>species</rank>
3873                                   </taxonomy>
3874                                 </clade>
3875                                 <clade>
3876                                   <taxonomy>
3877                                     <id provider="uniprot">39947</id>
3878                                     <code>ORYSJ</code>
3879                                     <scientific_name>Oryza sativa subsp. japonica</scientific_name>
3880                                     <common_name>Rice</common_name>
3881                                   </taxonomy>
3882                                 </clade>
3883                               </clade>
3884                               <clade>
3885                                 <taxonomy>
3886                                   <id provider="uniprot">15368</id>
3887                                   <code>BRADI</code>
3888                                   <scientific_name>Brachypodium distachyon</scientific_name>
3889                                   <common_name>Purple false brome</common_name>
3890                                   <synonym>Trachynia distachya</synonym>
3891                                   <rank>species</rank>
3892                                   <uri>http://upload.wikimedia.org/wikipedia/commons/0/01/Brachypodium_distachyon_Bd21-3.jpg</uri>
3893                                 </taxonomy>
3894                               </clade>
3895                             </clade>
3896                           </clade>
3897                           <clade>
3898                             <taxonomy>
3899                               <id provider="uniprot">4641</id>
3900                               <code>MUSAC</code>
3901                               <scientific_name>Musa acuminata</scientific_name>
3902                               <common_name>Banana</common_name>
3903                               <synonym>Musa cavendishii</synonym>
3904                               <rank>species</rank>
3905                               <uri>http://upload.wikimedia.org/wikipedia/commons/f/fd/Musa_acuminata1.jpg</uri>
3906                             </taxonomy>
3907                           </clade>
3908                         </clade>
3909                       </clade>
3910                       <clade>
3911                         <taxonomy>
3912                           <id provider="uniprot">34167</id>
3913                           <code>SELMO</code>
3914                           <scientific_name>Selaginella mollis</scientific_name>
3915                           <common_name>Moss</common_name>
3916                           <rank>species</rank>
3917                         </taxonomy>
3918                       </clade>
3919                     </clade>
3920                     <clade>
3921                       <taxonomy>
3922                         <id provider="uniprot">145481</id>
3923                         <code>PHYPA</code>
3924                         <scientific_name>Physcomitrella patens subsp. patens</scientific_name>
3925                         <common_name>Moss</common_name>
3926                         <rank>subspecies</rank>
3927                       </taxonomy>
3928                     </clade>
3929                   </clade>
3930                   <clade>
3931                     <taxonomy>
3932                       <id provider="uniprot">3041</id>
3933                       <scientific_name>Chlorophyta</scientific_name>
3934                       <rank>phylum</rank>
3935                     </taxonomy>
3936                     <clade>
3937                       <taxonomy>
3938                         <id provider="uniprot">13792</id>
3939                         <scientific_name>Mamiellales</scientific_name>
3940                         <rank>order</rank>
3941                       </taxonomy>
3942                       <clade>
3943                         <taxonomy>
3944                           <id provider="uniprot">70447</id>
3945                           <scientific_name>Ostreococcus</scientific_name>
3946                           <rank>genus</rank>
3947                         </taxonomy>
3948                         <clade>
3949                           <taxonomy>
3950                             <id provider="uniprot">436017</id>
3951                             <code>OSTLU</code>
3952                             <scientific_name>Ostreococcus lucimarinus (strain CCE9901)</scientific_name>
3953                           </taxonomy>
3954                         </clade>
3955                         <clade>
3956                           <taxonomy>
3957                             <id provider="uniprot">385169</id>
3958                             <scientific_name>Ostreococcus sp. RCC809</scientific_name>
3959                             <rank>species</rank>
3960                           </taxonomy>
3961                         </clade>
3962                         <clade>
3963                           <taxonomy>
3964                             <id provider="uniprot">70448</id>
3965                             <code>OSTTA</code>
3966                             <scientific_name>Ostreococcus tauri</scientific_name>
3967                             <rank>species</rank>
3968                           </taxonomy>
3969                         </clade>
3970                       </clade>
3971                       <clade>
3972                         <taxonomy>
3973                           <id provider="uniprot">38832</id>
3974                           <scientific_name>Micromonas</scientific_name>
3975                           <rank>genus</rank>
3976                         </taxonomy>
3977                         <clade>
3978                           <taxonomy>
3979                             <id provider="uniprot">564608</id>
3980                             <code>MICPC</code>
3981                             <scientific_name>Micromonas pusilla (strain CCMP1545)</scientific_name>
3982                             <common_name>Picoplanktonic green alga</common_name>
3983                           </taxonomy>
3984                         </clade>
3985                         <clade>
3986                           <taxonomy>
3987                             <id provider="uniprot">296587</id>
3988                             <code>MICSR</code>
3989                             <scientific_name>Micromonas sp. (strain RCC299 / NOUM17)</scientific_name>
3990                             <common_name>Picoplanktonic green alga</common_name>
3991                             <synonym>Micromonas sp. RCC299</synonym>
3992                             <rank>species</rank>
3993                           </taxonomy>
3994                         </clade>
3995                       </clade>
3996                     </clade>
3997                     <clade>
3998                       <name>Trebouxiophyceae &amp; Chlorophyceae</name>
3999                       <clade>
4000                         <taxonomy>
4001                           <id provider="uniprot">75966</id>
4002                           <scientific_name>Trebouxiophyceae</scientific_name>
4003                           <rank>class</rank>
4004                         </taxonomy>
4005                         <clade>
4006                           <taxonomy>
4007                             <id provider="uniprot">763042</id>
4008                             <scientific_name>Asterochloris sp. Cgr/DA1pho</scientific_name>
4009                             <rank>species</rank>
4010                             <uri>http://genome.jgi-psf.org/Astpho1/Figure_3.jpg</uri>
4011                           </taxonomy>
4012                         </clade>
4013                         <clade>
4014                           <taxonomy>
4015                             <id provider="uniprot">554065</id>
4016                             <scientific_name>Chlorella variabilis</scientific_name>
4017                             <synonym>Chlorella sp. NC64A</synonym>
4018                             <rank>species</rank>
4019                           </taxonomy>
4020                         </clade>
4021                         <clade>
4022                           <taxonomy>
4023                             <id provider="uniprot">574566</id>
4024                             <scientific_name>Coccomyxa sp. C-169</scientific_name>
4025                             <synonym>Chlorella vulgaris C-169</synonym>
4026                             <rank>species</rank>
4027                           </taxonomy>
4028                         </clade>
4029                       </clade>
4030                       <clade>
4031                         <taxonomy>
4032                           <id provider="uniprot">3042</id>
4033                           <scientific_name>Chlamydomonadales</scientific_name>
4034                           <rank>order</rank>
4035                         </taxonomy>
4036                         <clade>
4037                           <taxonomy>
4038                             <id provider="uniprot">3055</id>
4039                             <code>CHLRE</code>
4040                             <scientific_name>Chlamydomonas reinhardtii</scientific_name>
4041                             <synonym>Chlamydomonas smithii</synonym>
4042                             <rank>species</rank>
4043                           </taxonomy>
4044                         </clade>
4045                         <clade>
4046                           <taxonomy>
4047                             <id provider="uniprot">3067</id>
4048                             <code>VOLCA</code>
4049                             <scientific_name>Volvox carteri</scientific_name>
4050                             <common_name>Green alga</common_name>
4051                             <rank>species</rank>
4052                             <uri>http://genome.jgi-psf.org/Volca1/Volvox.jpg</uri>
4053                           </taxonomy>
4054                         </clade>
4055                       </clade>
4056                     </clade>
4057                   </clade>
4058                 </clade>
4059                 <clade>
4060                   <taxonomy>
4061                     <id provider="uniprot">2763</id>
4062                     <scientific_name>Rhodophyta</scientific_name>
4063                     <common_name>red algae</common_name>
4064                   </taxonomy>
4065                   <clade>
4066                     <taxonomy>
4067                       <id provider="uniprot">265316</id>
4068                       <scientific_name>Cyanidiaceae</scientific_name>
4069                       <rank>family</rank>
4070                     </taxonomy>
4071                     <clade>
4072                       <taxonomy>
4073                         <id provider="uniprot">45157</id>
4074                         <code>CYAME</code>
4075                         <scientific_name>Cyanidioschyzon merolae</scientific_name>
4076                         <common_name>Red alga</common_name>
4077                         <rank>species</rank>
4078                         <uri>http://www.shigen.nig.ac.jp/algae_tree/CyanidiophyceaeIMG.jpg</uri>
4079                       </taxonomy>
4080                     </clade>
4081                     <clade>
4082                       <taxonomy>
4083                         <id provider="uniprot">130081</id>
4084                         <code>GALSU</code>
4085                         <scientific_name>Galdieria sulphuraria</scientific_name>
4086                         <common_name>Red alga</common_name>
4087                         <rank>species</rank>
4088                         <uri>http://phenomena.nationalgeographic.com/files/2013/03/Alga.jpg</uri>
4089                       </taxonomy>
4090                     </clade>
4091                   </clade>
4092                   <clade>
4093                     <taxonomy>
4094                       <id provider="uniprot">2769</id>
4095                       <code>CHOCR</code>
4096                       <scientific_name>Chondrus crispus</scientific_name>
4097                       <common_name>Carragheen moss</common_name>
4098                       <rank>species</rank>
4099                       <uri>http://www.seaweed.ie/_images/MG3_0485.png</uri>
4100                     </taxonomy>
4101                   </clade>
4102                 </clade>
4103                 <clade>
4104                   <taxonomy>
4105                     <id provider="uniprot">38254</id>
4106                     <scientific_name>Glaucocystophyceae</scientific_name>
4107                     <synonym>Glaucophyta</synonym>
4108                     <rank>class</rank>
4109                   </taxonomy>
4110                   <clade>
4111                     <taxonomy>
4112                       <id provider="uniprot">2762</id>
4113                       <code>CYAPA</code>
4114                       <scientific_name>Cyanophora paradoxa</scientific_name>
4115                       <rank>species</rank>
4116                       <uri>http://www.people.vcu.edu/~rfisher/paradoxa.jpg</uri>
4117                     </taxonomy>
4118                   </clade>
4119                   <clade>
4120                     <taxonomy>
4121                       <id provider="uniprot">38271</id>
4122                       <scientific_name>Glaucocystis nostochinearum</scientific_name>
4123                       <rank>species</rank>
4124                       <uri>http://protist.i.hosei.ac.jp/pdb/images/Others/Glaucocystis/sp_02.jpg</uri>
4125                     </taxonomy>
4126                   </clade>
4127                 </clade>
4128               </clade>
4129               <clade>
4130                 <name>Hacrobia (Cryptophyta &amp; Haptophyceae &amp; Centroheliozoa)</name>
4131                 <clade>
4132                   <taxonomy>
4133                     <id provider="uniprot">2903</id>
4134                     <code>EMIHU</code>
4135                     <scientific_name>Emiliania huxleyi</scientific_name>
4136                     <rank>species</rank>
4137                     <uri>http://research.kahaku.go.jp/zoology/kaisei/hp-2/images/hapto.jpg</uri>
4138                   </taxonomy>
4139                 </clade>
4140                 <clade>
4141                   <taxonomy>
4142                     <id provider="uniprot">55529</id>
4143                     <code>GUITH</code>
4144                     <scientific_name>Guillardia theta</scientific_name>
4145                     <synonym>Cryptomonas phi</synonym>
4146                     <rank>species</rank>
4147                     <uri>http://genome.jgi.doe.gov/public/Guith1/Gtheta_SEM.jpg</uri>
4148                   </taxonomy>
4149                   <reference doi="10.1016/j.cub.2007.03.069">
4150                     <desc>Multiple Gene Phylogenies Support the Monophyly of Cryptomonad and Haptophyte Host Lineages</desc>
4151                   </reference>
4152                   <reference>
4153                   </reference>
4154                 </clade>
4155               </clade>
4156             </clade>
4157             <clade>
4158               <name>Stramenopiles &amp; Alveolata &amp; Rhizaria</name>
4159               <reference doi="10.1186/1471-2148-10-377">
4160                 <desc>Evolution of Rhizaria: new insights from phylogenomic analysis of uncultivated protists</desc>
4161               </reference>
4162               <reference>
4163               </reference>
4164               <clade>
4165                 <name>Stramenopiles &amp; Alveolata</name>
4166                 <clade>
4167                   <taxonomy>
4168                     <id provider="uniprot">33630</id>
4169                     <scientific_name>Alveolata</scientific_name>
4170                   </taxonomy>
4171                   <clade>
4172                     <taxonomy>
4173                       <id provider="uniprot">5794</id>
4174                       <scientific_name>Apicomplexa</scientific_name>
4175                       <rank>phylum</rank>
4176                     </taxonomy>
4177                     <clade>
4178                       <taxonomy>
4179                         <id provider="uniprot">422676</id>
4180                         <scientific_name>Aconoidasida</scientific_name>
4181                         <rank>class</rank>
4182                       </taxonomy>
4183                       <clade>
4184                         <taxonomy>
4185                           <id provider="uniprot">5820</id>
4186                           <scientific_name>Plasmodium</scientific_name>
4187                           <rank>genus</rank>
4188                         </taxonomy>
4189                         <clade>
4190                           <taxonomy>
4191                             <id provider="uniprot">5825</id>
4192                             <code>PLACH</code>
4193                             <scientific_name>Plasmodium chabaudi</scientific_name>
4194                             <rank>species</rank>
4195                           </taxonomy>
4196                         </clade>
4197                         <clade>
4198                           <taxonomy>
4199                             <id provider="uniprot">5833</id>
4200                             <code>PLAFA</code>
4201                             <scientific_name>Plasmodium falciparum</scientific_name>
4202                             <rank>species</rank>
4203                           </taxonomy>
4204                         </clade>
4205                         <clade>
4206                           <taxonomy>
4207                             <id provider="uniprot">73239</id>
4208                             <code>PLAYO</code>
4209                             <scientific_name>Plasmodium yoelii yoelii</scientific_name>
4210                             <rank>subspecies</rank>
4211                           </taxonomy>
4212                         </clade>
4213                       </clade>
4214                       <clade>
4215                         <name>Theileria</name>
4216                         <taxonomy>
4217                           <id provider="uniprot">5873</id>
4218                           <scientific_name>Theileria</scientific_name>
4219                           <rank>genus</rank>
4220                         </taxonomy>
4221                         <clade>
4222                           <taxonomy>
4223                             <id provider="uniprot">5874</id>
4224                             <code>THEAN</code>
4225                             <scientific_name>Theileria annulata</scientific_name>
4226                             <rank>species</rank>
4227                           </taxonomy>
4228                         </clade>
4229                         <clade>
4230                           <taxonomy>
4231                             <id provider="uniprot">5875</id>
4232                             <code>THEPA</code>
4233                             <scientific_name>Theileria parva</scientific_name>
4234                             <rank>species</rank>
4235                           </taxonomy>
4236                         </clade>
4237                       </clade>
4238                     </clade>
4239                     <clade>
4240                       <taxonomy>
4241                         <id provider="uniprot">423054</id>
4242                         <scientific_name>Eimeriorina</scientific_name>
4243                         <rank>suborder</rank>
4244                       </taxonomy>
4245                       <clade>
4246                         <taxonomy>
4247                           <id provider="uniprot">5806</id>
4248                           <scientific_name>Cryptosporidium</scientific_name>
4249                           <rank>genus</rank>
4250                         </taxonomy>
4251                         <clade>
4252                           <taxonomy>
4253                             <id provider="uniprot">237895</id>
4254                             <code>CRYHO</code>
4255                             <scientific_name>Cryptosporidium hominis</scientific_name>
4256                             <rank>species</rank>
4257                           </taxonomy>
4258                         </clade>
4259                         <clade>
4260                           <taxonomy>
4261                             <id provider="uniprot">5807</id>
4262                             <code>CRYPV</code>
4263                             <scientific_name>Cryptosporidium parvum</scientific_name>
4264                             <rank>species</rank>
4265                           </taxonomy>
4266                         </clade>
4267                       </clade>
4268                       <clade>
4269                         <name>Eimeria &amp; Toxoplasma</name>
4270                         <reference doi="10.1093/molbev/msn213">
4271                           <desc>The Apicomplexan Whole-Genome Phylogeny: An Analysis of Incongruence among Gene Trees</desc>
4272                         </reference>
4273                         <reference>
4274                         </reference>
4275                         <clade>
4276                           <taxonomy>
4277                             <id provider="uniprot">5802</id>
4278                             <code>EIMTE</code>
4279                             <scientific_name>Eimeria tenella</scientific_name>
4280                             <common_name>Coccidian parasite</common_name>
4281                             <rank>species</rank>
4282                             <uri>http://www.k-state.edu/parasitology/625tutorials/FIGtenella.jpg</uri>
4283                           </taxonomy>
4284                         </clade>
4285                         <clade>
4286                           <taxonomy>
4287                             <id provider="uniprot">5811</id>
4288                             <code>TOXGO</code>
4289                             <scientific_name>Toxoplasma gondii</scientific_name>
4290                             <rank>species</rank>
4291                           </taxonomy>
4292                         </clade>
4293                       </clade>
4294                     </clade>
4295                   </clade>
4296                   <clade>
4297                     <taxonomy>
4298                       <id provider="uniprot">431838</id>
4299                       <scientific_name>Intramacronucleata</scientific_name>
4300                       <rank>subphylum</rank>
4301                     </taxonomy>
4302                     <clade>
4303                       <taxonomy>
4304                         <id provider="uniprot">6020</id>
4305                         <scientific_name>Oligohymenophorea</scientific_name>
4306                         <rank>class</rank>
4307                       </taxonomy>
4308                       <clade>
4309                         <taxonomy>
4310                           <id provider="uniprot">5888</id>
4311                           <code>PARTE</code>
4312                           <scientific_name>Paramecium tetraurelia</scientific_name>
4313                           <rank>species</rank>
4314                         </taxonomy>
4315                       </clade>
4316                       <clade>
4317                         <taxonomy>
4318                           <id provider="uniprot">5911</id>
4319                           <code>TETTH</code>
4320                           <scientific_name>Tetrahymena thermophila</scientific_name>
4321                           <rank>species</rank>
4322                         </taxonomy>
4323                       </clade>
4324                     </clade>
4325                     <clade>
4326                       <taxonomy>
4327                         <id provider="uniprot">1172189</id>
4328                         <scientific_name>Oxytricha trifallax</scientific_name>
4329                         <authority>Stein, 1859</authority>
4330                         <rank>species</rank>
4331                         <uri>http://centexnaturalist.com/foldermainmenus/sfprotists/folderprotozoans/oxytricha04.gif</uri>
4332                       </taxonomy>
4333                     </clade>
4334                   </clade>
4335                 </clade>
4336                 <clade>
4337                   <taxonomy>
4338                     <id provider="uniprot">33634</id>
4339                     <scientific_name>Stramenopiles</scientific_name>
4340                     <authority>Patterson 1989, emend. Adl et al. 2005</authority>
4341                     <synonym>Chromophyta</synonym>
4342                     <synonym>heterokonts</synonym>
4343                   </taxonomy>
4344                   <clade>
4345                     <name>Pelagophyceae &amp; Bacillariophyta &amp; Oomycetes</name>
4346                     <reference doi="10.1016/j.protis.2008.11.004">
4347                       <desc>Seven Gene Phylogeny of Heterokonts</desc>
4348                     </reference>
4349                     <reference>
4350                     </reference>
4351                     <clade>
4352                       <name>Pelagophyceae &amp; Bacillariophyta</name>
4353                       <clade>
4354                         <taxonomy>
4355                           <id provider="uniprot">2836</id>
4356                           <scientific_name>Bacillariophyta</scientific_name>
4357                           <common_name>diatoms</common_name>
4358                           <rank>phylum</rank>
4359                         </taxonomy>
4360                         <clade>
4361                           <taxonomy>
4362                             <id provider="uniprot">33850</id>
4363                             <scientific_name>Bacillariophycidae</scientific_name>
4364                           </taxonomy>
4365                           <clade>
4366                             <taxonomy>
4367                               <id provider="uniprot">186039</id>
4368                               <code>FRACY</code>
4369                               <scientific_name>Fragilariopsis cylindrus</scientific_name>
4370                               <authority>Krieger</authority>
4371                               <synonym>Nitzschia cylindrus</synonym>
4372                               <rank>species</rank>
4373                               <uri>http://www.awi.de/fileadmin/user_upload/News/Press_Releases/2012/1._Quartal/000_Fragilariposis_Chloroplasten_GDieckmann_w.jpg</uri>
4374                             </taxonomy>
4375                           </clade>
4376                           <clade>
4377                             <taxonomy>
4378                               <id provider="eol">912693</id>
4379                               <code>PHATR</code>
4380                               <scientific_name>Phaeodactylum tricornutum</scientific_name>
4381                               <authority>Bohlin</authority>
4382                               <rank>species</rank>
4383                             </taxonomy>
4384                           </clade>
4385                         </clade>
4386                         <clade>
4387                           <taxonomy>
4388                             <id provider="uniprot">35128</id>
4389                             <code>THAPS</code>
4390                             <scientific_name>Thalassiosira pseudonana</scientific_name>
4391                             <authority>Hasle &amp; Heimdal</authority>
4392                             <common_name>Marine diatom</common_name>
4393                             <synonym>Cyclotella nana</synonym>
4394                             <rank>species</rank>
4395                             <uri>http://www.genomenewsnetwork.org/gnn_images/sequenced_genomes/thalassiosira_pseudonana.jpg</uri>
4396                           </taxonomy>
4397                         </clade>
4398                       </clade>
4399                       <clade>
4400                         <taxonomy>
4401                           <id provider="eol">912461</id>
4402                           <code>AURAN</code>
4403                           <scientific_name>Aureococcus anophagefferens</scientific_name>
4404                           <authority>Hargraves &amp; Sieburth</authority>
4405                           <rank>species</rank>
4406                         </taxonomy>
4407                       </clade>
4408                     </clade>
4409                     <clade>
4410                       <taxonomy>
4411                         <id provider="uniprot">4783</id>
4412                         <scientific_name>Phytophthora</scientific_name>
4413                         <rank>genus</rank>
4414                       </taxonomy>
4415                       <clade>
4416                         <taxonomy>
4417                           <id provider="uniprot">4787</id>
4418                           <code>PHYIN</code>
4419                           <scientific_name>Phytophthora infestans</scientific_name>
4420                           <authority>(Mont.) de Bary 1876</authority>
4421                           <common_name>Potato late blight fungus</common_name>
4422                           <rank>species</rank>
4423                           <uri>http://bioweb.uwlax.edu/bio203/s2007/benrud_jaco/index_files/image4901.jpg</uri>
4424                         </taxonomy>
4425                       </clade>
4426                       <clade>
4427                         <taxonomy>
4428                           <id provider="uniprot">164328</id>
4429                           <code>PHYRM</code>
4430                           <scientific_name>Phytophthora ramorum</scientific_name>
4431                           <common_name>Sudden oak death agent</common_name>
4432                           <rank>species</rank>
4433                         </taxonomy>
4434                       </clade>
4435                       <clade>
4436                         <taxonomy>
4437                           <id provider="uniprot">67593</id>
4438                           <code>PHYSO</code>
4439                           <scientific_name>Phytophthora sojae</scientific_name>
4440                           <common_name>Soybean stem and root rot agent</common_name>
4441                           <synonym>Phytophthora megasperma f. sp. glycines</synonym>
4442                           <rank>species</rank>
4443                           <uri>http://genome.jgi-psf.org/Physo1_1/pramorum.jpg</uri>
4444                         </taxonomy>
4445                       </clade>
4446                     </clade>
4447                   </clade>
4448                   <clade>
4449                     <taxonomy>
4450                       <id provider="uniprot">33674</id>
4451                       <scientific_name>Thraustochytriaceae</scientific_name>
4452                       <synonym>Thraustochytriales</synonym>
4453                       <rank>family</rank>
4454                     </taxonomy>
4455                     <clade>
4456                       <taxonomy>
4457                         <id provider="uniprot">702273</id>
4458                         <code>AKEXX</code>
4459                         <scientific_name>Aplanochytrium kerguelense PBS07</scientific_name>
4460                         <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/9/91/Aplanolm.jpg/120px-Aplanolm.jpg</uri>
4461                       </taxonomy>
4462                     </clade>
4463                     <clade>
4464                       <taxonomy>
4465                         <id provider="uniprot">876976</id>
4466                         <code>SAGXX</code>
4467                         <scientific_name>Schizochytrium aggregatum ATCC 28209</scientific_name>
4468                         <uri>http://genome.jgi-psf.org/public/Schag1/120124-ATCC28209-22.JPG</uri>
4469                       </taxonomy>
4470                     </clade>
4471                   </clade>
4472                 </clade>
4473               </clade>
4474               <clade>
4475                 <taxonomy>
4476                   <id provider="uniprot">543769</id>
4477                   <scientific_name>Rhizaria</scientific_name>
4478                 </taxonomy>
4479                 <clade>
4480                   <taxonomy>
4481                     <id provider="uniprot">71427</id>
4482                     <scientific_name>Allogromia laticollaris</scientific_name>
4483                     <rank>species</rank>
4484                     <uri>http://forambarcoding.unige.ch/system/pictures/424/s600/A.laticollaris1.jpg</uri>
4485                   </taxonomy>
4486                 </clade>
4487                 <clade>
4488                   <taxonomy>
4489                     <id provider="uniprot">227086</id>
4490                     <code>BIGNA</code>
4491                     <scientific_name>Bigelowiella natans</scientific_name>
4492                     <synonym>Chlorarachnion sp. (strain CCMP621)</synonym>
4493                     <synonym>Pedinomonas minutissima</synonym>
4494                     <rank>species</rank>
4495                     <uri>http://genome.jgi.doe.gov/Bigna1/Bigna1.jpg</uri>
4496                   </taxonomy>
4497                 </clade>
4498               </clade>
4499             </clade>
4500           </clade>
4501           <clade>
4502             <name>Excavata</name>
4503             <reference doi="10.1038/nature04546">
4504             </reference>
4505             <clade>
4506               <name>Kinetoplastida &amp; Heterolobosea</name>
4507               <clade>
4508                 <taxonomy>
4509                   <id provider="uniprot">5654</id>
4510                   <scientific_name>Trypanosomatidae</scientific_name>
4511                   <rank>family</rank>
4512                 </taxonomy>
4513                 <clade>
4514                   <taxonomy>
4515                     <id provider="uniprot">5664</id>
4516                     <code>LEIMA</code>
4517                     <scientific_name>Leishmania major</scientific_name>
4518                     <rank>species</rank>
4519                   </taxonomy>
4520                 </clade>
4521                 <clade>
4522                   <taxonomy>
4523                     <id provider="uniprot">5702</id>
4524                     <code>TRYBB</code>
4525                     <scientific_name>Trypanosoma brucei brucei</scientific_name>
4526                     <rank>subspecies</rank>
4527                   </taxonomy>
4528                 </clade>
4529               </clade>
4530               <clade>
4531                 <taxonomy>
4532                   <id provider="uniprot">5762</id>
4533                   <code>NAEGR</code>
4534                   <scientific_name>Naegleria gruberi</scientific_name>
4535                   <common_name>Amoeba</common_name>
4536                   <rank>species</rank>
4537                 </taxonomy>
4538               </clade>
4539             </clade>
4540             <clade>
4541               <name>Metamonada</name>
4542               <clade>
4543                 <taxonomy>
4544                   <id provider="uniprot">5741</id>
4545                   <code>GIALA</code>
4546                   <scientific_name>Giardia lamblia</scientific_name>
4547                   <synonym>Giardia intestinalis</synonym>
4548                   <synonym>Giardia lamblia</synonym>
4549                   <rank>species</rank>
4550                 </taxonomy>
4551               </clade>
4552               <clade>
4553                 <taxonomy>
4554                   <id provider="uniprot">5722</id>
4555                   <code>TRIVA</code>
4556                   <scientific_name>Trichomonas vaginalis</scientific_name>
4557                   <rank>species</rank>
4558                 </taxonomy>
4559               </clade>
4560             </clade>
4561           </clade>
4562           <clade>
4563             <taxonomy>
4564               <id provider="uniprot">554296</id>
4565               <scientific_name>Apusozoa</scientific_name>
4566             </taxonomy>
4567             <reference doi="10.1016/j.protis.2008.06.002">
4568               <desc>Planomonadida ord. nov. (Apusozoa): Ultrastructural Affinity with Micronuclearia podoventralis and Deep Divergences within Planomonas gen. nov</desc>
4569             </reference>
4570             <clade>
4571               <taxonomy>
4572                 <id provider="uniprot">554453</id>
4573                 <scientific_name>Planomonas micra</scientific_name>
4574                 <authority>(Cavalier-Smith, 2008) Heiss, Walker &amp; Simpson 2010</authority>
4575                 <synonym>Apusomonadidae sp. micra</synonym>
4576                 <rank>species</rank>
4577               </taxonomy>
4578             </clade>
4579             <clade>
4580               <taxonomy>
4581                 <id provider="uniprot">529818</id>
4582                 <code>TTRXX</code>
4583                 <scientific_name>Thecamonas trahens</scientific_name>
4584                 <authority>Larsen &amp; Patterson 1990</authority>
4585                 <synonym>Amastigomonas trahens</synonym>
4586                 <rank>species</rank>
4587                 <uri>http://bioinformatica.upf.edu/2011/projectes11/Cx/images/pro_t_tra.jpg</uri>
4588               </taxonomy>
4589             </clade>
4590           </clade>
4591         </clade>
4592       </clade>
4593       <clade>
4594         <name>Archaea</name>
4595         <taxonomy>
4596           <id provider="uniprot">2157</id>
4597           <scientific_name>Archaea</scientific_name>
4598           <rank>superkingdom</rank>
4599         </taxonomy>
4600         <clade>
4601           <name>a_62</name>
4602           <clade>
4603             <name>a_56</name>
4604             <clade>
4605               <taxonomy>
4606                 <id provider="uniprot">28890</id>
4607                 <scientific_name>Euryarchaeota</scientific_name>
4608                 <rank>phylum</rank>
4609               </taxonomy>
4610               <clade>
4611                 <name>a_44</name>
4612                 <clade>
4613                   <name>a_28</name>
4614                   <clade>
4615                     <name>a_26</name>
4616                     <clade>
4617                       <taxonomy>
4618                         <id provider="uniprot">224756</id>
4619                         <scientific_name>Methanomicrobia</scientific_name>
4620                         <rank>class</rank>
4621                       </taxonomy>
4622                       <clade>
4623                         <name>a_14</name>
4624                         <clade>
4625                           <name>a_12</name>
4626                           <clade>
4627                             <taxonomy>
4628                               <id provider="uniprot">2206</id>
4629                               <scientific_name>Methanosarcinaceae</scientific_name>
4630                               <rank>family</rank>
4631                             </taxonomy>
4632                             <clade>
4633                               <taxonomy>
4634                                 <id provider="uniprot">2207</id>
4635                                 <scientific_name>Methanosarcina</scientific_name>
4636                                 <rank>genus</rank>
4637                               </taxonomy>
4638                               <clade>
4639                                 <name>a_2</name>
4640                                 <clade>
4641                                   <taxonomy>
4642                                     <id provider="uniprot">2214</id>
4643                                     <code>METAC</code>
4644                                     <scientific_name>Methanosarcina acetivorans</scientific_name>
4645                                     <rank>species</rank>
4646                                   </taxonomy>
4647                                 </clade>
4648                                 <clade>
4649                                   <taxonomy>
4650                                     <id provider="uniprot">269797</id>
4651                                     <code>METBF</code>
4652                                     <scientific_name>Methanosarcina barkeri (strain Fusaro / DSM 804)</scientific_name>
4653                                   </taxonomy>
4654                                 </clade>
4655                               </clade>
4656                               <clade>
4657                                 <taxonomy>
4658                                   <id provider="uniprot">2209</id>
4659                                   <code>METMA</code>
4660                                   <scientific_name>Methanosarcina mazei</scientific_name>
4661                                   <synonym>Methanosarcina frisia</synonym>
4662                                   <rank>species</rank>
4663                                 </taxonomy>
4664                               </clade>
4665                             </clade>
4666                             <clade>
4667                               <taxonomy>
4668                                 <id provider="uniprot">259564</id>
4669                                 <code>METBU</code>
4670                                 <scientific_name>Methanococcoides burtonii (strain DSM 6242)</scientific_name>
4671                               </taxonomy>
4672                             </clade>
4673                           </clade>
4674                           <clade>
4675                             <name>a_11</name>
4676                             <taxonomy>
4677                               <id provider="uniprot">2191</id>
4678                               <scientific_name>Methanomicrobiales</scientific_name>
4679                               <rank>order</rank>
4680                             </taxonomy>
4681                             <clade>
4682                               <name>a_9</name>
4683                               <clade>
4684                                 <taxonomy>
4685                                   <id provider="uniprot">456442</id>
4686                                   <code>METB6</code>
4687                                   <scientific_name>Methanoregula boonei (strain 6A8)</scientific_name>
4688                                 </taxonomy>
4689                               </clade>
4690                               <clade>
4691                                 <taxonomy>
4692                                   <id provider="uniprot">2203</id>
4693                                   <code>METHU</code>
4694                                   <scientific_name>Methanospirillum hungatei</scientific_name>
4695                                   <rank>species</rank>
4696                                 </taxonomy>
4697                               </clade>
4698                             </clade>
4699                             <clade>
4700                               <taxonomy>
4701                                 <id provider="uniprot">368407</id>
4702                                 <code>METMJ</code>
4703                                 <scientific_name>Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1)</scientific_name>
4704                               </taxonomy>
4705                             </clade>
4706                           </clade>
4707                         </clade>
4708                         <clade>
4709                           <taxonomy>
4710                             <id provider="uniprot">410358</id>
4711                             <code>METLZ</code>
4712                             <scientific_name>Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z)</scientific_name>
4713                           </taxonomy>
4714                         </clade>
4715                       </clade>
4716                       <clade>
4717                         <taxonomy>
4718                           <id provider="uniprot">349307</id>
4719                           <code>METTP</code>
4720                           <scientific_name>Methanosaeta thermophila (strain DSM 6194 / PT)</scientific_name>
4721                           <synonym>Methanothrix thermophila (strain DSM 6194 / PT)</synonym>
4722                         </taxonomy>
4723                       </clade>
4724                     </clade>
4725                     <clade>
4726                       <name>a_25</name>
4727                       <taxonomy>
4728                         <id provider="uniprot">2236</id>
4729                         <scientific_name>Halobacteriaceae</scientific_name>
4730                         <rank>family</rank>
4731                       </taxonomy>
4732                       <clade>
4733                         <name>a_23</name>
4734                         <clade>
4735                           <name>a_19</name>
4736                           <clade>
4737                             <taxonomy>
4738                               <id provider="uniprot">2238</id>
4739                               <code>HALMA</code>
4740                               <scientific_name>Haloarcula marismortui</scientific_name>
4741                               <synonym>Halobacterium marismortui</synonym>
4742                               <rank>species</rank>
4743                             </taxonomy>
4744                           </clade>
4745                           <clade>
4746                             <taxonomy>
4747                               <id provider="uniprot">2257</id>
4748                               <code>NATPH</code>
4749                               <scientific_name>Natronomonas pharaonis</scientific_name>
4750                               <common_name>Natronobacterium pharaonis</common_name>
4751                               <rank>species</rank>
4752                             </taxonomy>
4753                           </clade>
4754                         </clade>
4755                         <clade>
4756                           <name>a_22</name>
4757                           <taxonomy>
4758                             <id provider="uniprot">2239</id>
4759                             <scientific_name>Halobacterium</scientific_name>
4760                             <rank>genus</rank>
4761                           </taxonomy>
4762                           <clade>
4763                             <taxonomy>
4764                               <id provider="uniprot">478009</id>
4765                               <code>HALS3</code>
4766                               <scientific_name>Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1)</scientific_name>
4767                             </taxonomy>
4768                           </clade>
4769                           <clade>
4770                             <taxonomy>
4771                               <id provider="uniprot">2243</id>
4772                               <code>HALSP</code>
4773                               <scientific_name>Halobacterium sp.</scientific_name>
4774                               <rank>species</rank>
4775                             </taxonomy>
4776                           </clade>
4777                         </clade>
4778                       </clade>
4779                       <clade>
4780                         <taxonomy>
4781                           <id provider="uniprot">362976</id>
4782                           <code>HALWD</code>
4783                           <scientific_name>Haloquadratum walsbyi (strain DSM 16790)</scientific_name>
4784                         </taxonomy>
4785                       </clade>
4786                     </clade>
4787                   </clade>
4788                   <clade>
4789                     <taxonomy>
4790                       <id provider="uniprot">2234</id>
4791                       <code>ARCFU</code>
4792                       <scientific_name>Archaeoglobus fulgidus</scientific_name>
4793                       <rank>species</rank>
4794                     </taxonomy>
4795                   </clade>
4796                 </clade>
4797                 <clade>
4798                   <name>a_43</name>
4799                   <clade>
4800                     <name>a_41</name>
4801                     <clade>
4802                       <name>a_35</name>
4803                       <taxonomy>
4804                         <id provider="uniprot">2182</id>
4805                         <scientific_name>Methanococcales</scientific_name>
4806                         <rank>order</rank>
4807                       </taxonomy>
4808                       <clade>
4809                         <name>a_31</name>
4810                         <clade>
4811                           <taxonomy>
4812                             <id provider="uniprot">2190</id>
4813                             <code>METJA</code>
4814                             <scientific_name>Methanocaldococcus jannaschii</scientific_name>
4815                             <synonym>Methanococcus jannaschii</synonym>
4816                             <rank>species</rank>
4817                           </taxonomy>
4818                         </clade>
4819                         <clade>
4820                           <taxonomy>
4821                             <id provider="uniprot">419665</id>
4822                             <code>META3</code>
4823                             <scientific_name>Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280)</scientific_name>
4824                           </taxonomy>
4825                         </clade>
4826                       </clade>
4827                       <clade>
4828                         <name>a_34</name>
4829                         <taxonomy>
4830                           <id provider="uniprot">2184</id>
4831                           <scientific_name>Methanococcus</scientific_name>
4832                           <rank>genus</rank>
4833                         </taxonomy>
4834                         <clade>
4835                           <taxonomy>
4836                             <id provider="uniprot">39152</id>
4837                             <code>METMP</code>
4838                             <scientific_name>Methanococcus maripaludis</scientific_name>
4839                             <synonym>Methanococcus deltae</synonym>
4840                             <rank>species</rank>
4841                           </taxonomy>
4842                         </clade>
4843                         <clade>
4844                           <taxonomy>
4845                             <id provider="uniprot">406327</id>
4846                             <code>METVS</code>
4847                             <scientific_name>Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224)</scientific_name>
4848                           </taxonomy>
4849                         </clade>
4850                       </clade>
4851                     </clade>
4852                     <clade>
4853                       <name>a_40</name>
4854                       <taxonomy>
4855                         <id provider="uniprot">2159</id>
4856                         <scientific_name>Methanobacteriaceae</scientific_name>
4857                         <rank>family</rank>
4858                       </taxonomy>
4859                       <clade>
4860                         <name>a_38</name>
4861                         <clade>
4862                           <taxonomy>
4863                             <id provider="uniprot">420247</id>
4864                             <code>METS3</code>
4865                             <scientific_name>Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861)</scientific_name>
4866                           </taxonomy>
4867                         </clade>
4868                         <clade>
4869                           <taxonomy>
4870                             <id provider="uniprot">339860</id>
4871                             <code>METST</code>
4872                             <scientific_name>Methanosphaera stadtmanae (strain DSM 3091)</scientific_name>
4873                           </taxonomy>
4874                         </clade>
4875                       </clade>
4876                       <clade>
4877                         <taxonomy>
4878                           <id provider="uniprot">187420</id>
4879                           <code>METTH</code>
4880                           <scientific_name>Methanobacterium thermoautotrophicum</scientific_name>
4881                         </taxonomy>
4882                       </clade>
4883                     </clade>
4884                   </clade>
4885                   <clade>
4886                     <taxonomy>
4887                       <id provider="uniprot">2320</id>
4888                       <code>METKA</code>
4889                       <scientific_name>Methanopyrus kandleri</scientific_name>
4890                       <rank>species</rank>
4891                     </taxonomy>
4892                   </clade>
4893                 </clade>
4894               </clade>
4895               <clade>
4896                 <name>a_51</name>
4897                 <taxonomy>
4898                   <id provider="uniprot">2259</id>
4899                   <scientific_name>Thermococcaceae</scientific_name>
4900                   <rank>family</rank>
4901                 </taxonomy>
4902                 <clade>
4903                   <name>a_47</name>
4904                   <clade>
4905                     <taxonomy>
4906                       <id provider="uniprot">2261</id>
4907                       <code>PYRFU</code>
4908                       <scientific_name>Pyrococcus furiosus</scientific_name>
4909                       <rank>species</rank>
4910                     </taxonomy>
4911                   </clade>
4912                   <clade>
4913                     <taxonomy>
4914                       <id provider="uniprot">69014</id>
4915                       <code>PYRKO</code>
4916                       <scientific_name>Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1)</scientific_name>
4917                       <synonym>Thermococcus kodakaraensis (strain KOD1)</synonym>
4918                     </taxonomy>
4919                   </clade>
4920                 </clade>
4921                 <clade>
4922                   <name>a_50</name>
4923                   <taxonomy>
4924                     <id provider="uniprot">2260</id>
4925                     <scientific_name>Pyrococcus</scientific_name>
4926                     <rank>genus</rank>
4927                   </taxonomy>
4928                   <clade>
4929                     <taxonomy>
4930                       <id provider="uniprot">29292</id>
4931                       <code>PYRAB</code>
4932                       <scientific_name>Pyrococcus abyssi</scientific_name>
4933                       <rank>species</rank>
4934                     </taxonomy>
4935                   </clade>
4936                   <clade>
4937                     <taxonomy>
4938                       <id provider="uniprot">53953</id>
4939                       <code>PYRHO</code>
4940                       <scientific_name>Pyrococcus horikoshii</scientific_name>
4941                       <rank>species</rank>
4942                     </taxonomy>
4943                   </clade>
4944                 </clade>
4945               </clade>
4946             </clade>
4947             <clade>
4948               <name>a_55</name>
4949               <clade>
4950                 <taxonomy>
4951                   <id provider="uniprot">228908</id>
4952                   <code>NANEQ</code>
4953                   <scientific_name>Nanoarchaeum equitans (strain Kin4-M)</scientific_name>
4954                 </taxonomy>
4955               </clade>
4956               <clade>
4957                 <taxonomy>
4958                   <id provider="uniprot">436308</id>
4959                   <code>NITMS</code>
4960                   <scientific_name>Nitrosopumilus maritimus (strain SCM1)</scientific_name>
4961                 </taxonomy>
4962               </clade>
4963             </clade>
4964           </clade>
4965           <clade>
4966             <taxonomy>
4967               <id provider="uniprot">2301</id>
4968               <scientific_name>Thermoplasmatales</scientific_name>
4969               <rank>order</rank>
4970             </taxonomy>
4971             <clade>
4972               <name>a_59</name>
4973               <taxonomy>
4974                 <id provider="uniprot">2302</id>
4975                 <scientific_name>Thermoplasma</scientific_name>
4976                 <rank>genus</rank>
4977               </taxonomy>
4978               <clade>
4979                 <taxonomy>
4980                   <id provider="uniprot">273075</id>
4981                   <code>THEAC</code>
4982                   <scientific_name>Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)</scientific_name>
4983                 </taxonomy>
4984               </clade>
4985               <clade>
4986                 <taxonomy>
4987                   <id provider="uniprot">273116</id>
4988                   <code>THEVO</code>
4989                   <scientific_name>Thermoplasma volcanium (strain ATCC 51530 / DSM 4299 / IFO 15438 / JCM 9571 / GSS1)</scientific_name>
4990                 </taxonomy>
4991               </clade>
4992             </clade>
4993             <clade>
4994               <taxonomy>
4995                 <id provider="uniprot">263820</id>
4996                 <code>PICTO</code>
4997                 <scientific_name>Picrophilus torridus (strain ATCC 700027 / DSM 9790 / JCM 10055 / NBRC 100828)</scientific_name>
4998               </taxonomy>
4999             </clade>
5000           </clade>
5001         </clade>
5002         <clade>
5003           <name>a_93</name>
5004           <clade>
5005             <taxonomy>
5006               <id provider="uniprot">183924</id>
5007               <scientific_name>Thermoprotei</scientific_name>
5008               <rank>class</rank>
5009             </taxonomy>
5010             <clade>
5011               <name>a_83</name>
5012               <clade>
5013                 <name>a_81</name>
5014                 <clade>
5015                   <name>a_73</name>
5016                   <taxonomy>
5017                     <id provider="uniprot">2267</id>
5018                     <scientific_name>Thermoproteaceae</scientific_name>
5019                     <rank>family</rank>
5020                   </taxonomy>
5021                   <clade>
5022                     <name>a_71</name>
5023                     <clade>
5024                       <name>a_67</name>
5025                       <taxonomy>
5026                         <id provider="uniprot">2276</id>
5027                         <scientific_name>Pyrobaculum</scientific_name>
5028                         <rank>genus</rank>
5029                       </taxonomy>
5030                       <clade>
5031                         <name>a_65</name>
5032                         <clade>
5033                           <taxonomy>
5034                             <id provider="uniprot">340102</id>
5035                             <code>PYRAR</code>
5036                             <scientific_name>Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321)</scientific_name>
5037                           </taxonomy>
5038                         </clade>
5039                         <clade>
5040                           <taxonomy>
5041                             <id provider="uniprot">410359</id>
5042                             <code>PYRCJ</code>
5043                             <scientific_name>Pyrobaculum calidifontis (strain JCM 11548 / VA1)</scientific_name>
5044                           </taxonomy>
5045                         </clade>
5046                       </clade>
5047                       <clade>
5048                         <taxonomy>
5049                           <id provider="uniprot">13773</id>
5050                           <code>PYRAE</code>
5051                           <scientific_name>Pyrobaculum aerophilum</scientific_name>
5052                           <rank>species</rank>
5053                         </taxonomy>
5054                       </clade>
5055                     </clade>
5056                     <clade>
5057                       <name>a_70</name>
5058                       <clade>
5059                         <taxonomy>
5060                           <id provider="uniprot">384616</id>
5061                           <code>PYRIL</code>
5062                           <scientific_name>Pyrobaculum islandicum (strain DSM 4184 / JCM 9189)</scientific_name>
5063                         </taxonomy>
5064                       </clade>
5065                       <clade>
5066                         <taxonomy>
5067                           <id provider="uniprot">444157</id>
5068                           <code>THENV</code>
5069                           <scientific_name>Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta)</scientific_name>
5070                         </taxonomy>
5071                       </clade>
5072                     </clade>
5073                   </clade>
5074                   <clade>
5075                     <taxonomy>
5076                       <id provider="uniprot">397948</id>
5077                       <code>CALMQ</code>
5078                       <scientific_name>Caldivirga maquilingensis (strain ATCC 700844 / DSMZ 13496 / JCM 10307 / IC-167)</scientific_name>
5079                     </taxonomy>
5080                   </clade>
5081                 </clade>
5082                 <clade>
5083                   <name>a_80</name>
5084                   <taxonomy>
5085                     <id provider="uniprot">118883</id>
5086                     <scientific_name>Sulfolobaceae</scientific_name>
5087                     <rank>family</rank>
5088                   </taxonomy>
5089                   <clade>
5090                     <name>a_78</name>
5091                     <taxonomy>
5092                       <id provider="uniprot">2284</id>
5093                       <scientific_name>Sulfolobus</scientific_name>
5094                       <rank>genus</rank>
5095                     </taxonomy>
5096                     <clade>
5097                       <name>a_76</name>
5098                       <clade>
5099                         <taxonomy>
5100                           <id provider="uniprot">2285</id>
5101                           <code>SULAC</code>
5102                           <scientific_name>Sulfolobus acidocaldarius</scientific_name>
5103                           <rank>species</rank>
5104                         </taxonomy>
5105                       </clade>
5106                       <clade>
5107                         <taxonomy>
5108                           <id provider="uniprot">273063</id>
5109                           <code>SULTO</code>
5110                           <scientific_name>Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)</scientific_name>
5111                         </taxonomy>
5112                       </clade>
5113                     </clade>
5114                     <clade>
5115                       <taxonomy>
5116                         <id provider="uniprot">2287</id>
5117                         <code>SULSO</code>
5118                         <scientific_name>Sulfolobus solfataricus</scientific_name>
5119                         <rank>species</rank>
5120                       </taxonomy>
5121                     </clade>
5122                   </clade>
5123                   <clade>
5124                     <taxonomy>
5125                       <id provider="uniprot">399549</id>
5126                       <code>METS5</code>
5127                       <scientific_name>Metallosphaera sedula (strain ATCC 51363 / DSM 5348)</scientific_name>
5128                     </taxonomy>
5129                   </clade>
5130                 </clade>
5131               </clade>
5132               <clade>
5133                 <taxonomy>
5134                   <id provider="uniprot">56636</id>
5135                   <code>AERPE</code>
5136                   <scientific_name>Aeropyrum pernix</scientific_name>
5137                   <rank>species</rank>
5138                 </taxonomy>
5139               </clade>
5140             </clade>
5141             <clade>
5142               <name>a_90</name>
5143               <clade>
5144                 <name>a_88</name>
5145                 <clade>
5146                   <name>a_86</name>
5147                   <clade>
5148                     <taxonomy>
5149                       <id provider="uniprot">399550</id>
5150                       <code>STAMF</code>
5151                       <scientific_name>Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1)</scientific_name>
5152                     </taxonomy>
5153                   </clade>
5154                   <clade>
5155                     <taxonomy>
5156                       <id provider="uniprot">368408</id>
5157                       <code>THEPD</code>
5158                       <scientific_name>Thermofilum pendens (strain Hrk 5)</scientific_name>
5159                     </taxonomy>
5160                   </clade>
5161                 </clade>
5162                 <clade>
5163                   <taxonomy>
5164                     <id provider="uniprot">415426</id>
5165                     <code>HYPBU</code>
5166                     <scientific_name>Hyperthermus butylicus (strain DSM 5456 / JCM 9403)</scientific_name>
5167                   </taxonomy>
5168                 </clade>
5169               </clade>
5170               <clade>
5171                 <taxonomy>
5172                   <id provider="uniprot">453591</id>
5173                   <code>IGNH4</code>
5174                   <scientific_name>Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125)</scientific_name>
5175                 </taxonomy>
5176               </clade>
5177             </clade>
5178           </clade>
5179           <clade>
5180             <taxonomy>
5181               <id provider="uniprot">374847</id>
5182               <code>KORCO</code>
5183               <scientific_name>Korarchaeum cryptofilum (strain OPF8)</scientific_name>
5184             </taxonomy>
5185           </clade>
5186         </clade>
5187       </clade>
5188     </clade>
5189     <clade>
5190       <taxonomy>
5191         <id provider="uniprot">2</id>
5192         <scientific_name>Bacteria</scientific_name>
5193         <rank>superkingdom</rank>
5194       </taxonomy>
5195       <clade>
5196         <name>b_278</name>
5197         <clade>
5198           <name>b_268</name>
5199           <clade>
5200             <name>b_226</name>
5201             <clade>
5202               <name>b_200</name>
5203               <clade>
5204                 <name>b_194</name>
5205                 <clade>
5206                   <name>b_104</name>
5207                   <clade>
5208                     <name>b_80</name>
5209                     <clade>
5210                       <taxonomy>
5211                         <id provider="uniprot">1224</id>
5212                         <scientific_name>Proteobacteria</scientific_name>
5213                         <rank>phylum</rank>
5214                       </taxonomy>
5215                       <clade>
5216                         <name>b_52</name>
5217                         <clade>
5218                           <name>b_44</name>
5219                           <clade>
5220                             <name>b_30</name>
5221                             <clade>
5222                               <name>b_24</name>
5223                               <taxonomy>
5224                                 <id provider="uniprot">1236</id>
5225                                 <scientific_name>Gammaproteobacteria</scientific_name>
5226                                 <rank>class</rank>
5227                               </taxonomy>
5228                               <clade>
5229                                 <name>b_16</name>
5230                                 <clade>
5231                                   <name>b_10</name>
5232                                   <taxonomy>
5233                                     <id provider="uniprot">543</id>
5234                                     <scientific_name>Enterobacteriaceae</scientific_name>
5235                                     <rank>family</rank>
5236                                   </taxonomy>
5237                                   <clade>
5238                                     <name>b_8</name>
5239                                     <clade>
5240                                       <name>b_6</name>
5241                                       <clade>
5242                                         <name>b_4</name>
5243                                         <clade>
5244                                           <name>b_2</name>
5245                                           <taxonomy>
5246                                             <id provider="uniprot">561</id>
5247                                             <scientific_name>Escherichia</scientific_name>
5248                                             <rank>genus</rank>
5249                                           </taxonomy>
5250                                           <clade>
5251                                             <taxonomy>
5252                                               <id provider="uniprot">83333</id>
5253                                               <code>ECOLI</code>
5254                                               <scientific_name>Escherichia coli (strain K12)</scientific_name>
5255                                             </taxonomy>
5256                                           </clade>
5257                                           <clade>
5258                                             <taxonomy>
5259                                               <id provider="uniprot">83334</id>
5260                                               <code>ECO57</code>
5261                                               <scientific_name>Escherichia coli O157:H7</scientific_name>
5262                                             </taxonomy>
5263                                           </clade>
5264                                         </clade>
5265                                         <clade>
5266                                           <taxonomy>
5267                                             <id provider="uniprot">623</id>
5268                                             <code>SHIFL</code>
5269                                             <scientific_name>Shigella flexneri</scientific_name>
5270                                             <rank>species</rank>
5271                                           </taxonomy>
5272                                         </clade>
5273                                       </clade>
5274                                       <clade>
5275                                         <taxonomy>
5276                                           <id provider="uniprot">90371</id>
5277                                           <code>SALTY</code>
5278                                           <scientific_name>Salmonella typhimurium</scientific_name>
5279                                         </taxonomy>
5280                                       </clade>
5281                                     </clade>
5282                                     <clade>
5283                                       <taxonomy>
5284                                         <id provider="uniprot">632</id>
5285                                         <code>YERPE</code>
5286                                         <scientific_name>Yersinia pestis</scientific_name>
5287                                         <rank>species</rank>
5288                                       </taxonomy>
5289                                     </clade>
5290                                   </clade>
5291                                   <clade>
5292                                     <taxonomy>
5293                                       <id provider="uniprot">29488</id>
5294                                       <code>PHOLU</code>
5295                                       <scientific_name>Photorhabdus luminescens</scientific_name>
5296                                       <synonym>Xenorhabdus luminescens</synonym>
5297                                       <rank>species</rank>
5298                                     </taxonomy>
5299                                   </clade>
5300                                 </clade>
5301                                 <clade>
5302                                   <name>b_15</name>
5303                                   <clade>
5304                                     <name>b_13</name>
5305                                     <taxonomy>
5306                                       <id provider="uniprot">641</id>
5307                                       <scientific_name>Vibrionaceae</scientific_name>
5308                                       <rank>family</rank>
5309                                     </taxonomy>
5310                                     <clade>
5311                                       <taxonomy>
5312                                         <id provider="uniprot">74109</id>
5313                                         <code>PHOPR</code>
5314                                         <scientific_name>Photobacterium profundum</scientific_name>
5315                                         <synonym>Photobacterium sp. (strain SS9)</synonym>
5316                                         <rank>species</rank>
5317                                       </taxonomy>
5318                                     </clade>
5319                                     <clade>
5320                                       <taxonomy>
5321                                         <id provider="uniprot">666</id>
5322                                         <code>VIBCH</code>
5323                                         <scientific_name>Vibrio cholerae</scientific_name>
5324                                         <rank>species</rank>
5325                                       </taxonomy>
5326                                     </clade>
5327                                   </clade>
5328                                   <clade>
5329                                     <taxonomy>
5330                                       <id provider="uniprot">318161</id>
5331                                       <code>SHEDO</code>
5332                                       <scientific_name>Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013)</scientific_name>
5333                                     </taxonomy>
5334                                   </clade>
5335                                 </clade>
5336                               </clade>
5337                               <clade>
5338                                 <name>b_23</name>
5339                                 <clade>
5340                                   <name>b_21</name>
5341                                   <taxonomy>
5342                                     <id provider="uniprot">286</id>
5343                                     <scientific_name>Pseudomonas</scientific_name>
5344                                     <rank>genus</rank>
5345                                   </taxonomy>
5346                                   <clade>
5347                                     <name>b_19</name>
5348                                     <clade>
5349                                       <taxonomy>
5350                                         <id provider="uniprot">220664</id>
5351                                         <code>PSEF5</code>
5352                                         <scientific_name>Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477)</scientific_name>
5353                                       </taxonomy>
5354                                     </clade>
5355                                     <clade>
5356                                       <taxonomy>
5357                                         <id provider="uniprot">205922</id>
5358                                         <code>PSEPF</code>
5359                                         <scientific_name>Pseudomonas fluorescens (strain Pf0-1)</scientific_name>
5360                                       </taxonomy>
5361                                     </clade>
5362                                   </clade>
5363                                   <clade>
5364                                     <taxonomy>
5365                                       <id provider="uniprot">287</id>
5366                                       <code>PSEAE</code>
5367                                       <scientific_name>Pseudomonas aeruginosa</scientific_name>
5368                                       <rank>species</rank>
5369                                     </taxonomy>
5370                                   </clade>
5371                                 </clade>
5372                                 <clade>
5373                                   <taxonomy>
5374                                     <id provider="uniprot">290398</id>
5375                                     <code>CHRSD</code>
5376                                     <scientific_name>Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768)</scientific_name>
5377                                   </taxonomy>
5378                                 </clade>
5379                               </clade>
5380                             </clade>
5381                             <clade>
5382                               <name>b_29</name>
5383                               <taxonomy>
5384                                 <id provider="uniprot">28216</id>
5385                                 <scientific_name>Betaproteobacteria</scientific_name>
5386                                 <rank>class</rank>
5387                               </taxonomy>
5388                               <clade>
5389                                 <taxonomy>
5390                                   <id provider="uniprot">159087</id>
5391                                   <code>DECAR</code>
5392                                   <scientific_name>Dechloromonas aromatica (strain RCB)</scientific_name>
5393                                 </taxonomy>
5394                               </clade>
5395                               <clade>
5396                                 <taxonomy>
5397                                   <id provider="uniprot">266264</id>
5398                                   <code>RALME</code>
5399                                   <scientific_name>Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839)</scientific_name>
5400                                 </taxonomy>
5401                               </clade>
5402                             </clade>
5403                           </clade>
5404                           <clade>
5405                             <name>b_43</name>
5406                             <clade>
5407                               <name>b_41</name>
5408                               <clade>
5409                                 <name>b_35</name>
5410                                 <taxonomy>
5411                                   <id provider="uniprot">28216</id>
5412                                   <scientific_name>Betaproteobacteria</scientific_name>
5413                                   <rank>class</rank>
5414                                 </taxonomy>
5415                                 <clade>
5416                                   <name>b_33</name>
5417                                   <taxonomy>
5418                                     <id provider="uniprot">206379</id>
5419                                     <scientific_name>Nitrosomonadaceae</scientific_name>
5420                                     <rank>family</rank>
5421                                   </taxonomy>
5422                                   <clade>
5423                                     <taxonomy>
5424                                       <id provider="uniprot">915</id>
5425                                       <code>NITEU</code>
5426                                       <scientific_name>Nitrosomonas europaea</scientific_name>
5427                                       <rank>species</rank>
5428                                     </taxonomy>
5429                                   </clade>
5430                                   <clade>
5431                                     <taxonomy>
5432                                       <id provider="uniprot">323848</id>
5433                                       <code>NITMU</code>
5434                                       <scientific_name>Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849)</scientific_name>
5435                                     </taxonomy>
5436                                   </clade>
5437                                 </clade>
5438                                 <clade>
5439                                   <taxonomy>
5440                                     <id provider="uniprot">36861</id>
5441                                     <code>THIDE</code>
5442                                     <scientific_name>Thiobacillus denitrificans</scientific_name>
5443                                     <rank>species</rank>
5444                                   </taxonomy>
5445                                 </clade>
5446                               </clade>
5447                               <clade>
5448                                 <name>b_40</name>
5449                                 <taxonomy>
5450                                   <id provider="uniprot">135613</id>
5451                                   <scientific_name>Chromatiales</scientific_name>
5452                                   <rank>order</rank>
5453                                 </taxonomy>
5454                                 <clade>
5455                                   <name>b_38</name>
5456                                   <taxonomy>
5457                                     <id provider="uniprot">72276</id>
5458                                     <scientific_name>Ectothiorhodospiraceae</scientific_name>
5459                                     <common_name>purple sulfur bacteria</common_name>
5460                                     <rank>family</rank>
5461                                   </taxonomy>
5462                                   <clade>
5463                                     <taxonomy>
5464                                       <id provider="uniprot">187272</id>
5465                                       <code>ALHEH</code>
5466                                       <scientific_name>Alkalilimnicola ehrlichei (strain MLHE-1)</scientific_name>
5467                                     </taxonomy>
5468                                   </clade>
5469                                   <clade>
5470                                     <taxonomy>
5471                                       <id provider="uniprot">349124</id>
5472                                       <code>HALHL</code>
5473                                       <scientific_name>Halorhodospira halophila (strain DSM 244 / SL1)</scientific_name>
5474                                       <synonym>Ectothiorhodospira halophila (strain DSM 244 / SL1)</synonym>
5475                                     </taxonomy>
5476                                   </clade>
5477                                 </clade>
5478                                 <clade>
5479                                   <taxonomy>
5480                                     <id provider="uniprot">323261</id>
5481                                     <code>NITOC</code>
5482                                     <scientific_name>Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848)</scientific_name>
5483                                   </taxonomy>
5484                                 </clade>
5485                               </clade>
5486                             </clade>
5487                             <clade>
5488                               <taxonomy>
5489                                 <id provider="uniprot">317025</id>
5490                                 <code>THICR</code>
5491                                 <scientific_name>Thiomicrospira crunogena (strain XCL-2)</scientific_name>
5492                               </taxonomy>
5493                             </clade>
5494                           </clade>
5495                         </clade>
5496                         <clade>
5497                           <name>b_51</name>
5498                           <taxonomy>
5499                             <id provider="uniprot">1236</id>
5500                             <scientific_name>Gammaproteobacteria</scientific_name>
5501                             <rank>class</rank>
5502                           </taxonomy>
5503                           <clade>
5504                             <name>b_47</name>
5505                             <clade>
5506                               <taxonomy>
5507                                 <id provider="uniprot">135577</id>
5508                                 <code>IDILO</code>
5509                                 <scientific_name>Idiomarina loihiensis</scientific_name>
5510                                 <rank>species</rank>
5511                               </taxonomy>
5512                             </clade>
5513                             <clade>
5514                               <taxonomy>
5515                                 <id provider="uniprot">446</id>
5516                                 <code>LEGPN</code>
5517                                 <scientific_name>Legionella pneumophila</scientific_name>
5518                                 <rank>species</rank>
5519                               </taxonomy>
5520                             </clade>
5521                           </clade>
5522                           <clade>
5523                             <name>b_50</name>
5524                             <taxonomy>
5525                               <id provider="uniprot">32033</id>
5526                               <scientific_name>Xanthomonadaceae</scientific_name>
5527                               <rank>family</rank>
5528                             </taxonomy>
5529                             <clade>
5530                               <taxonomy>
5531                                 <id provider="uniprot">92829</id>
5532                                 <code>XANAC</code>
5533                                 <scientific_name>Xanthomonas axonopodis pv. citri</scientific_name>
5534                                 <common_name>Citrus canker</common_name>
5535                               </taxonomy>
5536                             </clade>
5537                             <clade>
5538                               <taxonomy>
5539                                 <id provider="uniprot">183190</id>
5540                                 <code>XYLFT</code>
5541                                 <scientific_name>Xylella fastidiosa (strain Temecula1 / ATCC 700964)</scientific_name>
5542                               </taxonomy>
5543                             </clade>
5544                           </clade>
5545                         </clade>
5546                       </clade>
5547                       <clade>
5548                         <name>b_71</name>
5549                         <taxonomy>
5550                           <id provider="uniprot">28211</id>
5551                           <scientific_name>Alphaproteobacteria</scientific_name>
5552                           <rank>class</rank>
5553                         </taxonomy>
5554                         <clade>
5555                           <name>b_67</name>
5556                           <clade>
5557                             <name>b_65</name>
5558                             <clade>
5559                               <name>b_61</name>
5560                               <taxonomy>
5561                                 <id provider="uniprot">356</id>
5562                                 <scientific_name>Rhizobiales</scientific_name>
5563                                 <rank>order</rank>
5564                               </taxonomy>
5565                               <clade>
5566                                 <name>b_57</name>
5567                                 <taxonomy>
5568                                   <id provider="uniprot">227290</id>
5569                                   <scientific_name>Rhizobium/Agrobacterium group</scientific_name>
5570                                 </taxonomy>
5571                                 <clade>
5572                                   <taxonomy>
5573                                     <id provider="uniprot">176299</id>
5574                                     <code>AGRT5</code>
5575                                     <scientific_name>Agrobacterium tumefaciens (strain C58 / ATCC 33970)</scientific_name>
5576                                   </taxonomy>
5577                                 </clade>
5578                                 <clade>
5579                                   <taxonomy>
5580                                     <id provider="uniprot">347834</id>
5581                                     <code>RHIEC</code>
5582                                     <scientific_name>Rhizobium etli (strain CFN 42 / ATCC 51251)</scientific_name>
5583                                   </taxonomy>
5584                                 </clade>
5585                               </clade>
5586                               <clade>
5587                                 <name>b_60</name>
5588                                 <taxonomy>
5589                                   <id provider="uniprot">41294</id>
5590                                   <scientific_name>Bradyrhizobiaceae</scientific_name>
5591                                   <rank>family</rank>
5592                                 </taxonomy>
5593                                 <clade>
5594                                   <taxonomy>
5595                                     <id provider="uniprot">375</id>
5596                                     <code>BRAJA</code>
5597                                     <scientific_name>Bradyrhizobium japonicum</scientific_name>
5598                                     <rank>species</rank>
5599                                   </taxonomy>
5600                                 </clade>
5601                                 <clade>
5602                                   <taxonomy>
5603                                     <id provider="uniprot">395960</id>
5604                                     <code>RHOPT</code>
5605                                     <scientific_name>Rhodopseudomonas palustris (strain TIE-1)</scientific_name>
5606                                   </taxonomy>
5607                                 </clade>
5608                               </clade>
5609                             </clade>
5610                             <clade>
5611                               <name>b_64</name>
5612                               <taxonomy>
5613                                 <id provider="uniprot">31989</id>
5614                                 <scientific_name>Rhodobacteraceae</scientific_name>
5615                                 <rank>family</rank>
5616                               </taxonomy>
5617                               <clade>
5618                                 <taxonomy>
5619                                   <id provider="uniprot">349101</id>
5620                                   <code>RHOS1</code>
5621                                   <scientific_name>Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9)</scientific_name>
5622                                 </taxonomy>
5623                               </clade>
5624                               <clade>
5625                                 <taxonomy>
5626                                   <id provider="uniprot">375451</id>
5627                                   <code>ROSDO</code>
5628                                   <scientific_name>Roseobacter denitrificans (strain ATCC 33942 / OCh 114)</scientific_name>
5629                                   <common_name>Erythrobacter sp. (strain OCh 114)</common_name>
5630                                   <synonym>Roseobacter denitrificans</synonym>
5631                                 </taxonomy>
5632                               </clade>
5633                             </clade>
5634                           </clade>
5635                           <clade>
5636                             <taxonomy>
5637                               <id provider="uniprot">155892</id>
5638                               <code>CAUCR</code>
5639                               <scientific_name>Caulobacter crescentus</scientific_name>
5640                               <synonym>Caulobacter vibrioides</synonym>
5641                               <rank>species</rank>
5642                             </taxonomy>
5643                           </clade>
5644                         </clade>
5645                         <clade>
5646                           <name>b_70</name>
5647                           <taxonomy>
5648                             <id provider="uniprot">204441</id>
5649                             <scientific_name>Rhodospirillales</scientific_name>
5650                             <rank>order</rank>
5651                           </taxonomy>
5652                           <clade>
5653                             <taxonomy>
5654                               <id provider="uniprot">524</id>
5655                               <code>ACICY</code>
5656                               <scientific_name>Acidiphilium cryptum</scientific_name>
5657                               <rank>species</rank>
5658                             </taxonomy>
5659                           </clade>
5660                           <clade>
5661                             <taxonomy>
5662                               <id provider="uniprot">1085</id>
5663                               <code>RHORU</code>
5664                               <scientific_name>Rhodospirillum rubrum</scientific_name>
5665                               <rank>species</rank>
5666                             </taxonomy>
5667                           </clade>
5668                         </clade>
5669                       </clade>
5670                     </clade>
5671                     <clade>
5672                       <name>b_79</name>
5673                       <clade>
5674                         <name>b_77</name>
5675                         <taxonomy>
5676                           <id provider="uniprot">1224</id>
5677                           <scientific_name>Proteobacteria</scientific_name>
5678                           <rank>phylum</rank>
5679                         </taxonomy>
5680                         <clade>
5681                           <name>b_75</name>
5682                           <taxonomy>
5683                             <id provider="uniprot">712</id>
5684                             <scientific_name>Pasteurellaceae</scientific_name>
5685                             <rank>family</rank>
5686                           </taxonomy>
5687                           <clade>
5688                             <taxonomy>
5689                               <id provider="uniprot">727</id>
5690                               <code>HAEIN</code>
5691                               <scientific_name>Haemophilus influenzae</scientific_name>
5692                               <rank>species</rank>
5693                             </taxonomy>
5694                           </clade>
5695                           <clade>
5696                             <taxonomy>
5697                               <id provider="uniprot">747</id>
5698                               <code>PASMU</code>
5699                               <scientific_name>Pasteurella multocida</scientific_name>
5700                               <rank>species</rank>
5701                             </taxonomy>
5702                           </clade>
5703                         </clade>
5704                         <clade>
5705                           <taxonomy>
5706                             <id provider="uniprot">487</id>
5707                             <code>NEIME</code>
5708                             <scientific_name>Neisseria meningitidis</scientific_name>
5709                             <rank>species</rank>
5710                           </taxonomy>
5711                         </clade>
5712                       </clade>
5713                       <clade>
5714                         <taxonomy>
5715                           <id provider="uniprot">905</id>
5716                           <code>ACIFE</code>
5717                           <scientific_name>Acidaminococcus fermentans</scientific_name>
5718                           <rank>species</rank>
5719                         </taxonomy>
5720                       </clade>
5721                     </clade>
5722                   </clade>
5723                   <clade>
5724                     <name>b_103</name>
5725                     <clade>
5726                       <name>b_91</name>
5727                       <taxonomy>
5728                         <id provider="uniprot">28221</id>
5729                         <scientific_name>Deltaproteobacteria</scientific_name>
5730                         <rank>class</rank>
5731                       </taxonomy>
5732                       <clade>
5733                         <name>b_87</name>
5734                         <clade>
5735                           <name>b_83</name>
5736                           <clade>
5737                             <taxonomy>
5738                               <id provider="uniprot">84980</id>
5739                               <code>DESPS</code>
5740                               <scientific_name>Desulfotalea psychrophila</scientific_name>
5741                               <rank>species</rank>
5742                             </taxonomy>
5743                           </clade>
5744                           <clade>
5745                             <taxonomy>
5746                               <id provider="uniprot">876</id>
5747                               <code>DESDE</code>
5748                               <scientific_name>Desulfovibrio desulfuricans</scientific_name>
5749                               <rank>species</rank>
5750                             </taxonomy>
5751                           </clade>
5752                         </clade>
5753                         <clade>
5754                           <taxonomy>
5755                             <id provider="uniprot">56780</id>
5756                             <code>SYNAS</code>
5757                             <scientific_name>Syntrophus aciditrophicus (strain SB)</scientific_name>
5758                           </taxonomy>
5759                         </clade>
5760                       </clade>
5761                       <clade>
5762                         <name>b_90</name>
5763                         <taxonomy>
5764                           <id provider="uniprot">28231</id>
5765                           <scientific_name>Geobacter</scientific_name>
5766                           <rank>genus</rank>
5767                         </taxonomy>
5768                         <clade>
5769                           <taxonomy>
5770                             <id provider="uniprot">28232</id>
5771                             <code>GEOME</code>
5772                             <scientific_name>Geobacter metallireducens</scientific_name>
5773                             <rank>species</rank>
5774                           </taxonomy>
5775                         </clade>
5776                         <clade>
5777                           <taxonomy>
5778                             <id provider="uniprot">35554</id>
5779                             <code>GEOSL</code>
5780                             <scientific_name>Geobacter sulfurreducens</scientific_name>
5781                             <rank>species</rank>
5782                           </taxonomy>
5783                         </clade>
5784                       </clade>
5785                     </clade>
5786                     <clade>
5787                       <name>b_102</name>
5788                       <clade>
5789                         <name>b_98</name>
5790                         <clade>
5791                           <name>b_94</name>
5792                           <taxonomy>
5793                             <id provider="uniprot">31</id>
5794                             <scientific_name>Myxococcaceae</scientific_name>
5795                             <rank>family</rank>
5796                           </taxonomy>
5797                           <clade>
5798                             <taxonomy>
5799                               <id provider="uniprot">290397</id>
5800                               <code>ANADE</code>
5801                               <scientific_name>Anaeromyxobacter dehalogenans (strain 2CP-C)</scientific_name>
5802                             </taxonomy>
5803                           </clade>
5804                           <clade>
5805                             <taxonomy>
5806                               <id provider="uniprot">34</id>
5807                               <code>MYXXA</code>
5808                               <scientific_name>Myxococcus xanthus</scientific_name>
5809                               <rank>species</rank>
5810                             </taxonomy>
5811                           </clade>
5812                         </clade>
5813                         <clade>
5814                           <name>b_97</name>
5815                           <taxonomy>
5816                             <id provider="uniprot">57723</id>
5817                             <scientific_name>Acidobacteria</scientific_name>
5818                             <rank>phylum</rank>
5819                           </taxonomy>
5820                           <clade>
5821                             <taxonomy>
5822                               <id provider="uniprot">204669</id>
5823                               <code>ACIBL</code>
5824                               <scientific_name>Acidobacteria bacterium (strain Ellin345)</scientific_name>
5825                             </taxonomy>
5826                           </clade>
5827                           <clade>
5828                             <taxonomy>
5829                               <id provider="uniprot">332163</id>
5830                               <code>SOLUS</code>
5831                               <scientific_name>Solibacter usitatus</scientific_name>
5832                               <rank>species</rank>
5833                             </taxonomy>
5834                           </clade>
5835                         </clade>
5836                       </clade>
5837                       <clade>
5838                         <taxonomy>
5839                           <id provider="uniprot">265606</id>
5840                           <code>RHOBA</code>
5841                           <scientific_name>Rhodopirellula baltica</scientific_name>
5842                           <rank>species</rank>
5843                         </taxonomy>
5844                       </clade>
5845                     </clade>
5846                   </clade>
5847                 </clade>
5848                 <clade>
5849                   <name>b_193</name>
5850                   <clade>
5851                     <name>b_163</name>
5852                     <clade>
5853                       <name>b_133</name>
5854                       <clade>
5855                         <name>Chloroflexi &amp; Actinobacteria</name>
5856                         <clade>
5857                           <taxonomy>
5858                             <id provider="uniprot">201174</id>
5859                             <scientific_name>Actinobacteria</scientific_name>
5860                             <rank>phylum</rank>
5861                           </taxonomy>
5862                           <clade>
5863                             <taxonomy>
5864                               <id provider="uniprot">2037</id>
5865                               <scientific_name>Actinomycetales</scientific_name>
5866                               <rank>order</rank>
5867                             </taxonomy>
5868                             <clade>
5869                               <name>b_115</name>
5870                               <clade>
5871                                 <taxonomy>
5872                                   <id provider="uniprot">266940</id>
5873                                   <code>KINRD</code>
5874                                   <scientific_name>Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216)</scientific_name>
5875                                 </taxonomy>
5876                               </clade>
5877                               <clade>
5878                                 <taxonomy>
5879                                   <id provider="uniprot">378753</id>
5880                                   <code>KOCRD</code>
5881                                   <scientific_name>Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201)</scientific_name>
5882                                 </taxonomy>
5883                               </clade>
5884                               <clade>
5885                                 <taxonomy>
5886                                   <id provider="uniprot">1032480</id>
5887                                   <code>MICPN</code>
5888                                   <scientific_name>Microlunatus phosphovorus (strain ATCC 700054 / DSM 10555 / JCM 9379 / NBRC 101784 / NCIMB 13414 / VKM Ac-1990 / NM-1)</scientific_name>
5889                                   <common_name>Microlunatus phosphovorus NM-1</common_name>
5890                                   <rank>strain</rank>
5891                                 </taxonomy>
5892                               </clade>
5893                               <clade>
5894                                 <taxonomy>
5895                                   <id provider="uniprot">1902</id>
5896                                   <code>STRCO</code>
5897                                   <scientific_name>Streptomyces coelicolor</scientific_name>
5898                                   <rank>species</rank>
5899                                 </taxonomy>
5900                               </clade>
5901                               <clade>
5902                                 <taxonomy>
5903                                   <id provider="uniprot">269800</id>
5904                                   <code>THEFY</code>
5905                                   <scientific_name>Thermobifida fusca (strain YX)</scientific_name>
5906                                 </taxonomy>
5907                               </clade>
5908                             </clade>
5909                             <clade>
5910                               <taxonomy>
5911                                 <id provider="uniprot">85007</id>
5912                                 <scientific_name>Corynebacterineae</scientific_name>
5913                                 <rank>suborder</rank>
5914                               </taxonomy>
5915                               <clade>
5916                                 <taxonomy>
5917                                   <id provider="uniprot">1763</id>
5918                                   <scientific_name>Mycobacterium</scientific_name>
5919                                   <rank>genus</rank>
5920                                 </taxonomy>
5921                                 <clade>
5922                                   <taxonomy>
5923                                     <id provider="uniprot">1769</id>
5924                                     <code>MYCLE</code>
5925                                     <scientific_name>Mycobacterium leprae</scientific_name>
5926                                     <rank>species</rank>
5927                                   </taxonomy>
5928                                 </clade>
5929                                 <clade>
5930                                   <taxonomy>
5931                                     <id provider="uniprot">1773</id>
5932                                     <code>MYCTU</code>
5933                                     <scientific_name>Mycobacterium tuberculosis</scientific_name>
5934                                     <rank>species</rank>
5935                                   </taxonomy>
5936                                 </clade>
5937                               </clade>
5938                               <clade>
5939                                 <taxonomy>
5940                                   <id provider="uniprot">306537</id>
5941                                   <code>CORJK</code>
5942                                   <scientific_name>Corynebacterium jeikeium (strain K411)</scientific_name>
5943                                 </taxonomy>
5944                               </clade>
5945                               <clade>
5946                                 <taxonomy>
5947                                   <id provider="uniprot">632772</id>
5948                                   <code>RHOOB</code>
5949                                   <scientific_name>Rhodococcus opacus (strain B4)</scientific_name>
5950                                   <rank>strain</rank>
5951                                 </taxonomy>
5952                               </clade>
5953                             </clade>
5954                           </clade>
5955                           <clade>
5956                             <taxonomy>
5957                               <id provider="uniprot">266117</id>
5958                               <code>RUBXD</code>
5959                               <scientific_name>Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129)</scientific_name>
5960                             </taxonomy>
5961                           </clade>
5962                         </clade>
5963                         <clade>
5964                           <taxonomy>
5965                             <id provider="uniprot">200795</id>
5966                             <scientific_name>Chloroflexi</scientific_name>
5967                             <common_name>GNS bacteria</common_name>
5968                             <synonym>Thermomicrobia</synonym>
5969                             <rank>phylum</rank>
5970                           </taxonomy>
5971                           <clade>
5972                             <taxonomy>
5973                               <id provider="uniprot">32061</id>
5974                               <scientific_name>Chloroflexi (class)</scientific_name>
5975                               <synonym>Chloroflecales</synonym>
5976                               <synonym>Chloroflexus/Deinococcus group</synonym>
5977                               <rank>class</rank>
5978                             </taxonomy>
5979                             <clade>
5980                               <name>b_122</name>
5981                               <taxonomy>
5982                                 <id provider="uniprot">1106</id>
5983                                 <scientific_name>Chloroflexaceae</scientific_name>
5984                                 <common_name>filamentous anoxygenic phototrophic bacteria</common_name>
5985                                 <rank>family</rank>
5986                               </taxonomy>
5987                               <clade>
5988                                 <taxonomy>
5989                                   <id provider="uniprot">1108</id>
5990                                   <code>CHLAU</code>
5991                                   <scientific_name>Chloroflexus aurantiacus</scientific_name>
5992                                   <rank>species</rank>
5993                                 </taxonomy>
5994                               </clade>
5995                               <clade>
5996                                 <taxonomy>
5997                                   <id provider="uniprot">383372</id>
5998                                   <code>ROSCS</code>
5999                                   <scientific_name>Roseiflexus castenholzii (strain DSM 13941 / HLO8)</scientific_name>
6000                                   <rank>species</rank>
6001                                 </taxonomy>
6002                               </clade>
6003                             </clade>
6004                             <clade>
6005                               <taxonomy>
6006                                 <id provider="uniprot">65</id>
6007                                 <code>HERAU</code>
6008                                 <scientific_name>Herpetosiphon aurantiacus</scientific_name>
6009                                 <synonym>Herpetosiphon giganteus</synonym>
6010                                 <rank>species</rank>
6011                               </taxonomy>
6012                             </clade>
6013                           </clade>
6014                           <clade>
6015                             <taxonomy>
6016                               <id provider="uniprot">479434</id>
6017                               <code>SPHTD</code>
6018                               <scientific_name>Sphaerobacter thermophilus (strain DSM 20745 / S 6022)</scientific_name>
6019                               <rank>strain</rank>
6020                             </taxonomy>
6021                           </clade>
6022                         </clade>
6023                       </clade>
6024                       <clade>
6025                         <name>b_132</name>
6026                         <taxonomy>
6027                           <id provider="uniprot">188787</id>
6028                           <scientific_name>Deinococci</scientific_name>
6029                           <rank>class</rank>
6030                         </taxonomy>
6031                         <clade>
6032                           <name>b_130</name>
6033                           <taxonomy>
6034                             <id provider="uniprot">1298</id>
6035                             <scientific_name>Deinococcus</scientific_name>
6036                             <rank>genus</rank>
6037                           </taxonomy>
6038                           <clade>
6039                             <taxonomy>
6040                               <id provider="uniprot">319795</id>
6041                               <code>DEIGD</code>
6042                               <scientific_name>Deinococcus geothermalis (strain DSM 11300)</scientific_name>
6043                             </taxonomy>
6044                           </clade>
6045                           <clade>
6046                             <taxonomy>
6047                               <id provider="uniprot">1299</id>
6048                               <code>DEIRA</code>
6049                               <scientific_name>Deinococcus radiodurans</scientific_name>
6050                               <rank>species</rank>
6051                             </taxonomy>
6052                           </clade>
6053                         </clade>
6054                         <clade>
6055                           <taxonomy>
6056                             <id provider="uniprot">274</id>
6057                             <code>THETH</code>
6058                             <scientific_name>Thermus thermophilus</scientific_name>
6059                             <rank>species</rank>
6060                           </taxonomy>
6061                         </clade>
6062                       </clade>
6063                     </clade>
6064                     <clade>
6065                       <name>b_162</name>
6066                       <taxonomy>
6067                         <id provider="uniprot">1117</id>
6068                         <scientific_name>Cyanobacteria</scientific_name>
6069                         <rank>phylum</rank>
6070                       </taxonomy>
6071                       <clade>
6072                         <name>b_154</name>
6073                         <clade>
6074                           <name>b_152</name>
6075                           <clade>
6076                             <name>b_146</name>
6077                             <clade>
6078                               <name>b_144</name>
6079                               <clade>
6080                                 <name>b_142</name>
6081                                 <clade>
6082                                   <name>b_138</name>
6083                                   <taxonomy>
6084                                     <id provider="uniprot">1162</id>
6085                                     <scientific_name>Nostocaceae</scientific_name>
6086                                     <rank>family</rank>
6087                                   </taxonomy>
6088                                   <clade>
6089                                     <name>b_136</name>
6090                                     <clade>
6091                                       <taxonomy>
6092                                         <id provider="uniprot">1172</id>
6093                                         <code>ANAVA</code>
6094                                         <scientific_name>Anabaena variabilis</scientific_name>
6095                                         <rank>species</rank>
6096                                       </taxonomy>
6097                                     </clade>
6098                                     <clade>
6099                                       <taxonomy>
6100                                         <id provider="uniprot">28072</id>
6101                                         <code>NOSS7</code>
6102                                         <scientific_name>Nostoc sp. (strain PCC 7524)</scientific_name>
6103                                         <rank>species</rank>
6104                                       </taxonomy>
6105                                     </clade>
6106                                   </clade>
6107                                   <clade>
6108                                     <taxonomy>
6109                                       <id provider="uniprot">63737</id>
6110                                       <code>NOSP7</code>
6111                                       <scientific_name>Nostoc punctiforme (strain ATCC 29133 / PCC 73102)</scientific_name>
6112                                     </taxonomy>
6113                                   </clade>
6114                                 </clade>
6115                                 <clade>
6116                                   <taxonomy>
6117                                     <id provider="uniprot">155978</id>
6118                                     <code>ACAMR</code>
6119                                     <scientific_name>Acaryochloris marina</scientific_name>
6120                                     <rank>species</rank>
6121                                   </taxonomy>
6122                                 </clade>
6123                               </clade>
6124                               <clade>
6125                                 <taxonomy>
6126                                   <id provider="uniprot">449447</id>
6127                                   <code>MICAN</code>
6128                                   <scientific_name>Microcystis aeruginosa (strain NIES-843)</scientific_name>
6129                                 </taxonomy>
6130                               </clade>
6131                             </clade>
6132                             <clade>
6133                               <taxonomy>
6134                                 <id provider="uniprot">1206</id>
6135                                 <code>TRIER</code>
6136                                 <scientific_name>Trichodesmium erythraeum</scientific_name>
6137                                 <rank>species</rank>
6138                               </taxonomy>
6139                             </clade>
6140                           </clade>
6141                           <clade>
6142                             <name>b_149</name>
6143                             <taxonomy>
6144                               <id provider="uniprot">1118</id>
6145                               <scientific_name>Chroococcales</scientific_name>
6146                               <rank>order</rank>
6147                             </taxonomy>
6148                             <clade>
6149                               <taxonomy>
6150                                 <id provider="uniprot">32046</id>
6151                                 <code>SYNEL</code>
6152                                 <scientific_name>Synechococcus elongatus</scientific_name>
6153                                 <rank>species</rank>
6154                               </taxonomy>
6155                             </clade>
6156                             <clade>
6157                               <taxonomy>
6158                                 <id provider="uniprot">1148</id>
6159                                 <code>SYNY3</code>
6160                                 <scientific_name>Synechocystis sp. (strain PCC 6803)</scientific_name>
6161                                 <rank>species</rank>
6162                               </taxonomy>
6163                             </clade>
6164                           </clade>
6165                         </clade>
6166                         <clade>
6167                           <taxonomy>
6168                             <id provider="uniprot">33072</id>
6169                             <code>GLOVI</code>
6170                             <scientific_name>Gloeobacter violaceus</scientific_name>
6171                             <rank>species</rank>
6172                           </taxonomy>
6173                         </clade>
6174                       </clade>
6175                       <clade>
6176                         <name>b_161</name>
6177                         <clade>
6178                           <name>b_159</name>
6179                           <taxonomy>
6180                             <id provider="uniprot">1218</id>
6181                             <scientific_name>Prochlorococcus</scientific_name>
6182                             <rank>genus</rank>
6183                           </taxonomy>
6184                           <clade>
6185                             <name>b_157</name>
6186                             <clade>
6187                               <taxonomy>
6188                                 <id provider="uniprot">1219</id>
6189                                 <code>PROMA</code>
6190                                 <scientific_name>Prochlorococcus marinus</scientific_name>
6191                                 <rank>species</rank>
6192                               </taxonomy>
6193                             </clade>
6194                             <clade>
6195                               <taxonomy>
6196                                 <id provider="uniprot">59919</id>
6197                                 <code>PROMP</code>
6198                                 <scientific_name>Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4)</scientific_name>
6199                               </taxonomy>
6200                             </clade>
6201                           </clade>
6202                           <clade>
6203                             <taxonomy>
6204                               <id provider="uniprot">74547</id>
6205                               <code>PROMM</code>
6206                               <scientific_name>Prochlorococcus marinus (strain MIT 9313)</scientific_name>
6207                             </taxonomy>
6208                           </clade>
6209                         </clade>
6210                         <clade>
6211                           <taxonomy>
6212                             <id provider="uniprot">64471</id>
6213                             <code>SYNS3</code>
6214                             <scientific_name>Synechococcus sp. (strain CC9311)</scientific_name>
6215                             <rank>species</rank>
6216                           </taxonomy>
6217                         </clade>
6218                       </clade>
6219                     </clade>
6220                   </clade>
6221                   <clade>
6222                     <name>b_192</name>
6223                     <clade>
6224                       <name>b_190</name>
6225                       <clade>
6226                         <name>b_178</name>
6227                         <clade>
6228                           <name>b_176</name>
6229                           <taxonomy>
6230                             <id provider="uniprot">191412</id>
6231                             <scientific_name>Chlorobiaceae</scientific_name>
6232                             <rank>family</rank>
6233                           </taxonomy>
6234                           <clade>
6235                             <name>b_170</name>
6236                             <clade>
6237                               <name>b_166</name>
6238                               <clade>
6239                                 <taxonomy>
6240                                   <id provider="uniprot">331678</id>
6241                                   <code>CHLPB</code>
6242                                   <scientific_name>Chlorobium phaeobacteroides (strain BS1)</scientific_name>
6243                                 </taxonomy>
6244                               </clade>
6245                               <clade>
6246                                 <taxonomy>
6247                                   <id provider="uniprot">1102</id>
6248                                   <code>PROAE</code>
6249                                   <scientific_name>Prosthecochloris aestuarii</scientific_name>
6250                                   <rank>species</rank>
6251                                 </taxonomy>
6252                               </clade>
6253                             </clade>
6254                             <clade>
6255                               <name>b_169</name>
6256                               <taxonomy>
6257                                 <id provider="uniprot">274493</id>
6258                                 <scientific_name>Chlorobium/Pelodictyon group</scientific_name>
6259                               </taxonomy>
6260                               <clade>
6261                                 <taxonomy>
6262                                   <id provider="uniprot">1100</id>
6263                                   <code>PELLU</code>
6264                                   <scientific_name>Pelodictyon luteolum</scientific_name>
6265                                   <rank>species</rank>
6266                                 </taxonomy>
6267                               </clade>
6268                               <clade>
6269                                 <taxonomy>
6270                                   <id provider="uniprot">290318</id>
6271                                   <code>PROVI</code>
6272                                   <scientific_name>Prosthecochloris vibrioformis (strain DSM 265)</scientific_name>
6273                                   <common_name>Chlorobium vibrioforme subsp. thiosulfatophilum (strain DSM 265)</common_name>
6274                                   <synonym>Chlorobium phaeovibrioides (strain DSM 265)</synonym>
6275                                 </taxonomy>
6276                               </clade>
6277                             </clade>
6278                           </clade>
6279                           <clade>
6280                             <name>b_175</name>
6281                             <clade>
6282                               <name>b_173</name>
6283                               <taxonomy>
6284                                 <id provider="uniprot">256319</id>
6285                                 <scientific_name>Chlorobaculum</scientific_name>
6286                                 <rank>genus</rank>
6287                               </taxonomy>
6288                               <clade>
6289                                 <taxonomy>
6290                                   <id provider="uniprot">517417</id>
6291                                   <code>CHLP8</code>
6292                                   <scientific_name>Chlorobaculum parvum (strain NCIB 8327)</scientific_name>
6293                                   <synonym>Chlorobium vibrioforme subsp. thiosulfatophilum (strain DSM 263 / NCIB 8327)</synonym>
6294                                 </taxonomy>
6295                               </clade>
6296                               <clade>
6297                                 <taxonomy>
6298                                   <id provider="uniprot">1097</id>
6299                                   <code>CHLTE</code>
6300                                   <scientific_name>Chlorobium tepidum</scientific_name>
6301                                   <rank>species</rank>
6302                                 </taxonomy>
6303                               </clade>
6304                             </clade>
6305                             <clade>
6306                               <taxonomy>
6307                                 <id provider="uniprot">340177</id>
6308                                 <code>CHLCH</code>
6309                                 <scientific_name>Chlorobium chlorochromatii (strain CaD3)</scientific_name>
6310                               </taxonomy>
6311                             </clade>
6312                           </clade>
6313                         </clade>
6314                         <clade>
6315                           <taxonomy>
6316                             <id provider="uniprot">315277</id>
6317                             <code>CHLTA</code>
6318                             <scientific_name>Chlamydia trachomatis serovar A (strain HAR-13 / ATCC VR-571B)</scientific_name>
6319                           </taxonomy>
6320                         </clade>
6321                       </clade>
6322                       <clade>
6323                         <name>b_189</name>
6324                         <taxonomy>
6325                           <id provider="uniprot">976</id>
6326                           <scientific_name>Bacteroidetes</scientific_name>
6327                           <rank>phylum</rank>
6328                         </taxonomy>
6329                         <clade>
6330                           <name>b_183</name>
6331                           <clade>
6332                             <name>b_181</name>
6333                             <taxonomy>
6334                               <id provider="uniprot">49546</id>
6335                               <scientific_name>Flavobacteriaceae</scientific_name>
6336                               <rank>family</rank>
6337                             </taxonomy>
6338                             <clade>
6339                               <taxonomy>
6340                                 <id provider="uniprot">986</id>
6341                                 <code>FLAJO</code>
6342                                 <scientific_name>Flavobacterium johnsoniae</scientific_name>
6343                                 <synonym>Cytophaga johnsonae</synonym>
6344                                 <rank>species</rank>
6345                               </taxonomy>
6346                             </clade>
6347                             <clade>
6348                               <taxonomy>
6349                                 <id provider="uniprot">411154</id>
6350                                 <code>GRAFK</code>
6351                                 <scientific_name>Gramella forsetii (strain KT0803)</scientific_name>
6352                               </taxonomy>
6353                             </clade>
6354                           </clade>
6355                           <clade>
6356                             <taxonomy>
6357                               <id provider="uniprot">269798</id>
6358                               <code>CYTH3</code>
6359                               <scientific_name>Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469)</scientific_name>
6360                             </taxonomy>
6361                           </clade>
6362                         </clade>
6363                         <clade>
6364                           <name>b_188</name>
6365                           <taxonomy>
6366                             <id provider="uniprot">171549</id>
6367                             <scientific_name>Bacteroidales</scientific_name>
6368                             <rank>order</rank>
6369                           </taxonomy>
6370                           <clade>
6371                             <name>b_186</name>
6372                             <taxonomy>
6373                               <id provider="uniprot">816</id>
6374                               <scientific_name>Bacteroides</scientific_name>
6375                               <rank>genus</rank>
6376                             </taxonomy>
6377                             <clade>
6378                               <taxonomy>
6379                                 <id provider="uniprot">817</id>
6380                                 <code>BACFR</code>
6381                                 <scientific_name>Bacteroides fragilis</scientific_name>
6382                                 <rank>species</rank>
6383                               </taxonomy>
6384                             </clade>
6385                             <clade>
6386                               <taxonomy>
6387                                 <id provider="uniprot">818</id>
6388                                 <code>BACTN</code>
6389                                 <scientific_name>Bacteroides thetaiotaomicron</scientific_name>
6390                                 <rank>species</rank>
6391                               </taxonomy>
6392                             </clade>
6393                           </clade>
6394                           <clade>
6395                             <taxonomy>
6396                               <id provider="uniprot">837</id>
6397                               <code>PORGI</code>
6398                               <scientific_name>Porphyromonas gingivalis</scientific_name>
6399                               <synonym>Bacteroides gingivalis</synonym>
6400                               <rank>species</rank>
6401                             </taxonomy>
6402                           </clade>
6403                         </clade>
6404                       </clade>
6405                     </clade>
6406                     <clade>
6407                       <taxonomy>
6408                         <id provider="uniprot">309807</id>
6409                         <code>SALRD</code>
6410                         <scientific_name>Salinibacter ruber (strain DSM 13855 / M31)</scientific_name>
6411                       </taxonomy>
6412                     </clade>
6413                   </clade>
6414                 </clade>
6415               </clade>
6416               <clade>
6417                 <name>b_199</name>
6418                 <clade>
6419                   <name>b_197</name>
6420                   <taxonomy>
6421                     <scientific_name>Verrucomicrobia</scientific_name>
6422                   </taxonomy>
6423                   <clade>
6424                     <taxonomy>
6425                       <id provider="uniprot">349741</id>
6426                       <code>AKKM8</code>
6427                       <scientific_name>Akkermansia muciniphila (strain ATCC BAA-835)</scientific_name>
6428                     </taxonomy>
6429                   </clade>
6430                   <clade>
6431                     <taxonomy>
6432                       <id provider="uniprot">481448</id>
6433                       <code>METI4</code>
6434                       <scientific_name>Methylacidiphilum infernorum (isolate V4)</scientific_name>
6435                       <synonym>Methylokorus infernorum (strain V4)</synonym>
6436                     </taxonomy>
6437                   </clade>
6438                 </clade>
6439                 <clade>
6440                   <taxonomy>
6441                     <id provider="uniprot">44275</id>
6442                     <code>LEPIC</code>
6443                     <scientific_name>Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni</scientific_name>
6444                   </taxonomy>
6445                 </clade>
6446               </clade>
6447             </clade>
6448             <clade>
6449               <name>b_225</name>
6450               <clade>
6451                 <name>b_219</name>
6452                 <taxonomy>
6453                   <id provider="uniprot">1239</id>
6454                   <scientific_name>Firmicutes</scientific_name>
6455                   <rank>phylum</rank>
6456                 </taxonomy>
6457                 <clade>
6458                   <name>b_213</name>
6459                   <clade>
6460                     <taxonomy>
6461                       <id provider="uniprot">1385</id>
6462                       <scientific_name>Bacillales</scientific_name>
6463                       <rank>order</rank>
6464                     </taxonomy>
6465                     <clade>
6466                       <taxonomy>
6467                         <id provider="uniprot">186817</id>
6468                         <scientific_name>Bacillaceae</scientific_name>
6469                         <rank>family</rank>
6470                       </taxonomy>
6471                       <clade>
6472                         <taxonomy>
6473                           <id provider="uniprot">1386</id>
6474                           <scientific_name>Bacillus</scientific_name>
6475                           <rank>genus</rank>
6476                         </taxonomy>
6477                         <clade>
6478                           <taxonomy>
6479                             <id provider="uniprot">86661</id>
6480                             <scientific_name>Bacillus cereus group</scientific_name>
6481                           </taxonomy>
6482                           <clade>
6483                             <taxonomy>
6484                               <id provider="uniprot">1392</id>
6485                               <code>BACAN</code>
6486                               <scientific_name>Bacillus anthracis</scientific_name>
6487                               <rank>species</rank>
6488                             </taxonomy>
6489                           </clade>
6490                           <clade>
6491                             <taxonomy>
6492                               <id provider="uniprot">572264</id>
6493                               <code>BACC3</code>
6494                               <scientific_name>Bacillus cereus (strain 03BB102)</scientific_name>
6495                               <rank>strain</rank>
6496                             </taxonomy>
6497                           </clade>
6498                         </clade>
6499                         <clade>
6500                           <taxonomy>
6501                             <id provider="uniprot">1423</id>
6502                             <code>BACSU</code>
6503                             <scientific_name>Bacillus subtilis</scientific_name>
6504                             <rank>species</rank>
6505                           </taxonomy>
6506                         </clade>
6507                       </clade>
6508                       <clade>
6509                         <name>b_206</name>
6510                         <clade>
6511                           <taxonomy>
6512                             <id provider="uniprot">86665</id>
6513                             <code>BACHD</code>
6514                             <scientific_name>Bacillus halodurans</scientific_name>
6515                             <rank>species</rank>
6516                           </taxonomy>
6517                         </clade>
6518                         <clade>
6519                           <taxonomy>
6520                             <id provider="uniprot">1462</id>
6521                             <code>GEOKA</code>
6522                             <scientific_name>Geobacillus kaustophilus</scientific_name>
6523                             <rank>species</rank>
6524                           </taxonomy>
6525                         </clade>
6526                       </clade>
6527                     </clade>
6528                     <clade>
6529                       <name>b_210</name>
6530                       <clade>
6531                         <taxonomy>
6532                           <id provider="uniprot">1639</id>
6533                           <code>LISMO</code>
6534                           <scientific_name>Listeria monocytogenes</scientific_name>
6535                           <rank>species</rank>
6536                         </taxonomy>
6537                       </clade>
6538                       <clade>
6539                         <taxonomy>
6540                           <id provider="uniprot">1280</id>
6541                           <code>STAAU</code>
6542                           <scientific_name>Staphylococcus aureus</scientific_name>
6543                           <rank>species</rank>
6544                         </taxonomy>
6545                       </clade>
6546                     </clade>
6547                   </clade>
6548                   <clade>
6549                     <taxonomy>
6550                       <id provider="uniprot">195103</id>
6551                       <code>CLOP1</code>
6552                       <scientific_name>Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A)</scientific_name>
6553                     </taxonomy>
6554                   </clade>
6555                 </clade>
6556                 <clade>
6557                   <name>Clostridia</name>
6558                   <taxonomy>
6559                     <id provider="uniprot">186801</id>
6560                     <scientific_name>Clostridia</scientific_name>
6561                     <rank>class</rank>
6562                   </taxonomy>
6563                   <clade>
6564                     <name>b_218</name>
6565                     <clade>
6566                       <name>b_216</name>
6567                       <taxonomy>
6568                         <id provider="uniprot">186814</id>
6569                         <scientific_name>Thermoanaerobacteriaceae</scientific_name>
6570                         <rank>family</rank>
6571                       </taxonomy>
6572                       <clade>
6573                         <taxonomy>
6574                           <id provider="uniprot">246194</id>
6575                           <code>CARHZ</code>
6576                           <scientific_name>Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008)</scientific_name>
6577                         </taxonomy>
6578                       </clade>
6579                       <clade>
6580                         <taxonomy>
6581                           <id provider="uniprot">119072</id>
6582                           <code>THETN</code>
6583                           <scientific_name>Thermoanaerobacter tengcongensis</scientific_name>
6584                           <rank>species</rank>
6585                         </taxonomy>
6586                       </clade>
6587                     </clade>
6588                     <clade>
6589                       <taxonomy>
6590                         <id provider="uniprot">49338</id>
6591                         <code>DESHA</code>
6592                         <scientific_name>Desulfitobacterium hafniense</scientific_name>
6593                         <synonym>Desulfitobacterium frappieri</synonym>
6594                         <rank>species</rank>
6595                       </taxonomy>
6596                     </clade>
6597                   </clade>
6598                   <clade>
6599                     <taxonomy>
6600                       <id provider="uniprot">515619</id>
6601                       <code>EUBR3</code>
6602                       <scientific_name>Eubacterium rectale (strain ATCC 33656 / VPI 0990)</scientific_name>
6603                     </taxonomy>
6604                   </clade>
6605                 </clade>
6606               </clade>
6607               <clade>
6608                 <name>b_224</name>
6609                 <taxonomy>
6610                   <id provider="uniprot">188709</id>
6611                   <scientific_name>Thermotogaceae</scientific_name>
6612                   <rank>family</rank>
6613                 </taxonomy>
6614                 <clade>
6615                   <name>b_222</name>
6616                   <clade>
6617                     <taxonomy>
6618                       <id provider="uniprot">381764</id>
6619                       <code>FERNB</code>
6620                       <scientific_name>Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1)</scientific_name>
6621                     </taxonomy>
6622                   </clade>
6623                   <clade>
6624                     <taxonomy>
6625                       <id provider="uniprot">416591</id>
6626                       <code>THELT</code>
6627                       <scientific_name>Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO)</scientific_name>
6628                     </taxonomy>
6629                   </clade>
6630                 </clade>
6631                 <clade>
6632                   <taxonomy>
6633                     <id provider="uniprot">2336</id>
6634                     <code>THEMA</code>
6635                     <scientific_name>Thermotoga maritima</scientific_name>
6636                     <rank>species</rank>
6637                   </taxonomy>
6638                 </clade>
6639               </clade>
6640             </clade>
6641           </clade>
6642           <clade>
6643             <name>b_267</name>
6644             <clade>
6645               <name>b_263</name>
6646               <clade>
6647                 <name>b_251</name>
6648                 <clade>
6649                   <name>b_249</name>
6650                   <clade>
6651                     <name>b_245</name>
6652                     <clade>
6653                       <name>b_237</name>
6654                       <clade>
6655                         <name>b_233</name>
6656                         <taxonomy>
6657                           <id provider="uniprot">31969</id>
6658                           <scientific_name>Mollicutes</scientific_name>
6659                           <rank>class</rank>
6660                         </taxonomy>
6661                         <clade>
6662                           <name>b_231</name>
6663                           <clade>
6664                             <name>b_229</name>
6665                             <taxonomy>
6666                               <scientific_name>Mycoplasma</scientific_name>
6667                             </taxonomy>
6668                             <clade>
6669                               <taxonomy>
6670                                 <id provider="uniprot">2097</id>
6671                                 <code>MYCGE</code>
6672                                 <scientific_name>Mycoplasma genitalium</scientific_name>
6673                                 <rank>species</rank>
6674                               </taxonomy>
6675                             </clade>
6676                             <clade>
6677                               <taxonomy>
6678                                 <id provider="uniprot">2104</id>
6679                                 <code>MYCPN</code>
6680                                 <scientific_name>Mycoplasma pneumoniae</scientific_name>
6681                                 <rank>species</rank>
6682                               </taxonomy>
6683                             </clade>
6684                           </clade>
6685                           <clade>
6686                             <taxonomy>
6687                               <id provider="uniprot">2151</id>
6688                               <code>MESFL</code>
6689                               <scientific_name>Mesoplasma florum</scientific_name>
6690                               <synonym>Acholeplasma florum</synonym>
6691                               <rank>species</rank>
6692                             </taxonomy>
6693                           </clade>
6694                         </clade>
6695                         <clade>
6696                           <taxonomy>
6697                             <id provider="uniprot">134821</id>
6698                             <code>UREPA</code>
6699                             <scientific_name>Ureaplasma parvum</scientific_name>
6700                             <synonym>Ureaplasma urealyticum biotype 1</synonym>
6701                             <rank>species</rank>
6702                           </taxonomy>
6703                         </clade>
6704                       </clade>
6705                       <clade>
6706                         <name>b_236</name>
6707                         <taxonomy>
6708                           <id provider="uniprot">137</id>
6709                           <scientific_name>Spirochaetaceae</scientific_name>
6710                           <rank>family</rank>
6711                         </taxonomy>
6712                         <clade>
6713                           <taxonomy>
6714                             <id provider="uniprot">139</id>
6715                             <code>BORBU</code>
6716                             <scientific_name>Borrelia burgdorferi</scientific_name>
6717                             <common_name>Lyme disease spirochete</common_name>
6718                             <rank>species</rank>
6719                           </taxonomy>
6720                         </clade>
6721                         <clade>
6722                           <taxonomy>
6723                             <id provider="uniprot">160</id>
6724                             <code>TREPA</code>
6725                             <scientific_name>Treponema pallidum</scientific_name>
6726                             <rank>species</rank>
6727                           </taxonomy>
6728                         </clade>
6729                       </clade>
6730                     </clade>
6731                     <clade>
6732                       <name>b_244</name>
6733                       <clade>
6734                         <name>b_242</name>
6735                         <taxonomy>
6736                           <id provider="uniprot">1113537</id>
6737                           <scientific_name>Chlamydia/Chlamydophila group</scientific_name>
6738                         </taxonomy>
6739                         <clade>
6740                           <name>b_240</name>
6741                           <clade>
6742                             <taxonomy>
6743                               <id provider="uniprot">83558</id>
6744                               <code>CHLPN</code>
6745                               <scientific_name>Chlamydia pneumoniae</scientific_name>
6746                               <synonym>Chlamydophila pneumoniae</synonym>
6747                               <rank>species</rank>
6748                             </taxonomy>
6749                           </clade>
6750                           <clade>
6751                             <taxonomy>
6752                               <id provider="uniprot">264202</id>
6753                               <code>CHLFF</code>
6754                               <scientific_name>Chlamydophila felis (strain Fe/C-56)</scientific_name>
6755                             </taxonomy>
6756                           </clade>
6757                         </clade>
6758                         <clade>
6759                           <taxonomy>
6760                             <id provider="uniprot">83560</id>
6761                             <code>CHLMU</code>
6762                             <scientific_name>Chlamydia muridarum</scientific_name>
6763                             <rank>species</rank>
6764                           </taxonomy>
6765                         </clade>
6766                       </clade>
6767                       <clade>
6768                         <taxonomy>
6769                           <id provider="uniprot">785</id>
6770                           <code>RICTY</code>
6771                           <scientific_name>Rickettsia typhi</scientific_name>
6772                           <rank>species</rank>
6773                         </taxonomy>
6774                       </clade>
6775                     </clade>
6776                   </clade>
6777                   <clade>
6778                     <taxonomy>
6779                       <id provider="uniprot">28211</id>
6780                       <scientific_name>Alphaproteobacteria</scientific_name>
6781                       <rank>class</rank>
6782                     </taxonomy>
6783                     <clade>
6784                       <taxonomy>
6785                         <id provider="uniprot">38323</id>
6786                         <code>BARHE</code>
6787                         <scientific_name>Bartonella henselae</scientific_name>
6788                         <synonym>Rochalimaea henselae</synonym>
6789                         <rank>species</rank>
6790                       </taxonomy>
6791                     </clade>
6792                     <clade>
6793                       <taxonomy>
6794                         <id provider="uniprot">198252</id>
6795                         <code>PELUB</code>
6796                         <scientific_name>Pelagibacter ubique</scientific_name>
6797                         <rank>species</rank>
6798                       </taxonomy>
6799                     </clade>
6800                     <clade>
6801                       <taxonomy>
6802                         <id provider="uniprot">780</id>
6803                         <scientific_name>Rickettsia</scientific_name>
6804                         <rank>genus</rank>
6805                       </taxonomy>
6806                       <clade>
6807                         <taxonomy>
6808                           <id provider="uniprot">391896</id>
6809                           <code>RICB8</code>
6810                           <scientific_name>Rickettsia bellii (strain OSU 85-389)</scientific_name>
6811                         </taxonomy>
6812                       </clade>
6813                       <clade>
6814                         <taxonomy>
6815                           <id provider="uniprot">452659</id>
6816                           <code>RICRO</code>
6817                           <scientific_name>Rickettsia rickettsii (strain Iowa)</scientific_name>
6818                           <rank>strain</rank>
6819                         </taxonomy>
6820                       </clade>
6821                     </clade>
6822                   </clade>
6823                 </clade>
6824                 <clade>
6825                   <taxonomy>
6826                     <id provider="uniprot">263</id>
6827                     <code>FRATU</code>
6828                     <scientific_name>Francisella tularensis</scientific_name>
6829                     <rank>species</rank>
6830                   </taxonomy>
6831                 </clade>
6832               </clade>
6833               <clade>
6834                 <name>b_262</name>
6835                 <clade>
6836                   <name>b_260</name>
6837                   <clade>
6838                     <name>b_258</name>
6839                     <taxonomy>
6840                       <id provider="uniprot">186826</id>
6841                       <scientific_name>Lactobacillales</scientific_name>
6842                       <rank>order</rank>
6843                     </taxonomy>
6844                     <clade>
6845                       <name>b_256</name>
6846                       <taxonomy>
6847                         <id provider="uniprot">1300</id>
6848                         <scientific_name>Streptococcaceae</scientific_name>
6849                         <rank>family</rank>
6850                       </taxonomy>
6851                       <clade>
6852                         <name>b_254</name>
6853                         <taxonomy>
6854                           <id provider="uniprot">1301</id>
6855                           <scientific_name>Streptococcus</scientific_name>
6856                           <rank>genus</rank>
6857                         </taxonomy>
6858                         <clade>
6859                           <taxonomy>
6860                             <id provider="uniprot">1313</id>
6861                             <code>STRPN</code>
6862                             <scientific_name>Streptococcus pneumoniae</scientific_name>
6863                             <rank>species</rank>
6864                           </taxonomy>
6865                         </clade>
6866                         <clade>
6867                           <taxonomy>
6868                             <id provider="uniprot">1314</id>
6869                             <code>STRPY</code>
6870                             <scientific_name>Streptococcus pyogenes</scientific_name>
6871                             <rank>species</rank>
6872                           </taxonomy>
6873                         </clade>
6874                       </clade>
6875                       <clade>
6876                         <taxonomy>
6877                           <id provider="uniprot">1360</id>
6878                           <code>LACLA</code>
6879                           <scientific_name>Lactococcus lactis subsp. lactis</scientific_name>
6880                           <synonym>Streptococcus lactis</synonym>
6881                           <rank>subspecies</rank>
6882                         </taxonomy>
6883                       </clade>
6884                     </clade>
6885                     <clade>
6886                       <taxonomy>
6887                         <id provider="uniprot">1579</id>
6888                         <code>LACAC</code>
6889                         <scientific_name>Lactobacillus acidophilus</scientific_name>
6890                         <rank>species</rank>
6891                       </taxonomy>
6892                     </clade>
6893                   </clade>
6894                   <clade>
6895                     <taxonomy>
6896                       <id provider="uniprot">216816</id>
6897                       <code>BIFLO</code>
6898                       <scientific_name>Bifidobacterium longum</scientific_name>
6899                       <rank>species</rank>
6900                     </taxonomy>
6901                   </clade>
6902                 </clade>
6903                 <clade>
6904                   <taxonomy>
6905                     <id provider="uniprot">851</id>
6906                     <code>FUSNU</code>
6907                     <scientific_name>Fusobacterium nucleatum</scientific_name>
6908                     <rank>species</rank>
6909                   </taxonomy>
6910                 </clade>
6911               </clade>
6912             </clade>
6913             <clade>
6914               <name>b_266</name>
6915               <taxonomy>
6916                 <id provider="uniprot">61434</id>
6917                 <scientific_name>Dehalococcoides</scientific_name>
6918                 <rank>genus</rank>
6919               </taxonomy>
6920               <clade>
6921                 <taxonomy>
6922                   <id provider="uniprot">243164</id>
6923                   <code>DEHE1</code>
6924                   <scientific_name>Dehalococcoides ethenogenes (strain 195)</scientific_name>
6925                 </taxonomy>
6926               </clade>
6927               <clade>
6928                 <taxonomy>
6929                   <id provider="uniprot">216389</id>
6930                   <code>DEHSB</code>
6931                   <scientific_name>Dehalococcoides sp. (strain BAV1)</scientific_name>
6932                   <rank>species</rank>
6933                 </taxonomy>
6934               </clade>
6935             </clade>
6936           </clade>
6937         </clade>
6938         <clade>
6939           <name>b_277</name>
6940           <taxonomy>
6941             <id provider="uniprot">29547</id>
6942             <scientific_name>Epsilonproteobacteria</scientific_name>
6943             <rank>class</rank>
6944           </taxonomy>
6945           <clade>
6946             <name>b_273</name>
6947             <clade>
6948               <taxonomy>
6949                 <id provider="uniprot">387092</id>
6950                 <code>NITSB</code>
6951                 <scientific_name>Nitratiruptor sp. (strain SB155-2)</scientific_name>
6952                 <rank>species</rank>
6953               </taxonomy>
6954             </clade>
6955             <clade>
6956               <taxonomy>
6957                 <id provider="uniprot">387093</id>
6958                 <code>SULNB</code>
6959                 <scientific_name>Sulfurovum sp. (strain NBC37-1)</scientific_name>
6960                 <rank>species</rank>
6961               </taxonomy>
6962             </clade>
6963           </clade>
6964           <clade>
6965             <name>b_276</name>
6966             <taxonomy>
6967               <id provider="uniprot">213849</id>
6968               <scientific_name>Campylobacterales</scientific_name>
6969               <rank>order</rank>
6970             </taxonomy>
6971             <clade>
6972               <taxonomy>
6973                 <id provider="uniprot">197</id>
6974                 <code>CAMJE</code>
6975                 <scientific_name>Campylobacter jejuni</scientific_name>
6976                 <rank>species</rank>
6977               </taxonomy>
6978             </clade>
6979             <clade>
6980               <taxonomy>
6981                 <id provider="uniprot">357544</id>
6982                 <code>HELPH</code>
6983                 <scientific_name>Helicobacter pylori (strain HPAG1)</scientific_name>
6984               </taxonomy>
6985             </clade>
6986           </clade>
6987         </clade>
6988       </clade>
6989       <clade>
6990         <taxonomy>
6991           <id provider="uniprot">63363</id>
6992           <code>AQUAE</code>
6993           <scientific_name>Aquifex aeolicus</scientific_name>
6994           <rank>species</rank>
6995         </taxonomy>
6996       </clade>
6997     </clade>
6998   </clade>
6999 </phylogeny>
7000 </phyloxml>